Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: OM066885
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 15495
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Found at i:13806 original size:19 final size:19
Alignment explanation
Indices: 13778--13814 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
13768 AAATGCCCGT
13778 AGAGAACGATTCAATCAAG
1 AGAGAACGATTCAATCAAG
* *
13797 AGAGAGCGATTCACTCAA
1 AGAGAACGATTCAATCAA
13815 CACAGCTAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.19, G:0.22, T:0.16
Consensus pattern (19 bp):
AGAGAACGATTCAATCAAG
Left flanking sequence: Indices 13278 -- 13777
ACTCCTGACATAATATTTAAAGCTGTCAGTGTTACCAATTAGGTAATGTCGCATCTTATGTGCTG
CGAACATGAGAGCAAGGCATTCCTTTTGAACTGGTTATACCCAGCGGCAGTAAGTGAAGGGAGTC
GGTAGCCCATAGATGATCGAAGCCCAGCGATGTAATCGTCCGATGATGCTTTCTTCCTTCTCGAG
GAGAGTAGTGTCTTTCAGGGAATTACTCCTTGGATTTCAGAAAGACGCGTTTGTAGATTTAGATT
CCGTGACCATCTAGAAGTCGCCGGAAGAATGGTTTGGATCGTAGAGAAAGCGGCAGGCCTCTTTG
AGGAAGAGAAGTGGACCCTTTCCCGTTACCAAAAGACCAATTATGAGAGTTGCTTAGACCGTTTG
CGACAGAGAGCTGCTAATGGCTTTTGATTGCTCCCCTATACCTATAGAAGTTGGGAATGCCTTTT
GACTAAACTCAAATGCCCGTATAGCCGATACAGACAAATGCCCGT
Right flanking sequence: Indices 13815 -- 14314
CACAGCTAGAGGACGAGTTCGTTACCATCAGACAGAAGACCGATGAGCGTTACCAGAAGAGCGGG
AAATAGCATATCTTGAATAAAAAACTATTGTACAAAAGCACTTTATCCCCCCGGAAGGATTCCTC
CCTTACTAGAAAGGGACAACCAAGCTCCTTCAAGAAACTCTTGAGCCAGACCAACTCACACGTAG
TATGAGCCATAGCCCTATACCCCTACTTCTTTAGGTTCTGCACTCGATCTCGCCACACCTTAAAG
TACTAAAGGCTCTTTTTTGCTTTGTAACGTGACTAGGTTACCTCCAACAAGAGTACAGTACCCAG
TAGTGGAGCGCCTATCACAATGTGAGCCAGCCCAGTCCGCATCGGAATAAGCAGATAGTTACAAG
TGACCATGGTTACCATATAGGATCCCTTTACCAGGAGATGCATTGAGATACCAAAGAATCCGATG
AACTGCTTCTAAATGAGGAACTGACGGTGTATGCATGAATTGGCT
Done.