Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_035345
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 191481
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.28
Warning! 31 characters in sequence are not A, C, G, or T
Found at i:37 original size:30 final size:30
Alignment explanation
Indices: 1--185 Score: 302
Period size: 30 Copynumber: 6.2 Consensus size: 30
1 AAGTAGGTGAGACGTTAGTCGAAGGATACG
1 AAGTAGGTGAGACGTTAGTCGAAGGATACG
31 AAGTAGGTGAGACGTTAGTCGAAGGATACG
1 AAGTAGGTGAGACGTTAGTCGAAGGATACG
***
61 AAGTAGGTTTTA-GTTAGTCGAAGGATACG
1 AAGTAGGTGAGACGTTAGTCGAAGGATACG
90 AAGTAGGTGAGACGTTAGTCGAAGGATACG
1 AAGTAGGTGAGACGTTAGTCGAAGGATACG
120 AAGTAGGTGAGACGTTAGTCGAAGGATACG
1 AAGTAGGTGAGACGTTAGTCGAAGGATACG
***
150 AAGTAGGTTTTA-GTTAGTCGAAGGATACG
1 AAGTAGGTGAGACGTTAGTCGAAGGATACG
179 AAGTAGG
1 AAGTAGG
186 CTCGACTGAT
Statistics
Matches: 145, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
29 50 0.34
30 95 0.66
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.23
Consensus pattern (30 bp):
AAGTAGGTGAGACGTTAGTCGAAGGATACG
Left flanking sequence: None
Right flanking sequence: Indices 186 -- 685
CTCGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGTTAGTCGAGT
AGTAAAGGTAGAGGGCTTTTGTAAAAGTTGCATTTCATATAACTGTAAAAGTTATGATTTTGAAA
GTGAGTGGTTAGTCCAGCTGAATTACGCCCATGAAGAGCCGGGTTTTACCGTGCCCAGAACAGTA
GAGTAGAATGCAAGATTTGCTTGGTTACGGTTTCTAACCGACGAAGGCTTCGTTCTCACATCACC
TATCACATTATTGTTTAGTGAATCGGCTTGAATAAGGATGTGGTTTACACCCGCCTCCCTTTTCC
CTTCATTAACATGAGATTAGCCGCCCGGCCGGAAGAGCTTCCTTCTCTTGAACACGCTAGCTCAG
ATGGAGAACAGTGGCTGGTGGAACAGCCGGGAGAGAACTGACTCACACACAACGGCGAGCGGAGG
TCTTTCGTCAGCGACTTATATAATAGAAAAATAATATTAACTTAT
Found at i:94 original size:59 final size:60
Alignment explanation
Indices: 1--185 Score: 302
Period size: 59 Copynumber: 3.1 Consensus size: 60
1 AAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACG
1 AAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACG
***
61 AAGTAGGTTTTA-GTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACG
1 AAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACG
***
120 AAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTA-GTTAGTCGAAGGATACG
1 AAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACG
179 AAGTAGG
1 AAGTAGG
186 CTCGACTGAT
Statistics
Matches: 115, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
59 80 0.70
60 35 0.30
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.23
Consensus pattern (60 bp):
AAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACG
Left flanking sequence: None
Right flanking sequence: Indices 186 -- 685
CTCGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGTTAGTCGAGT
AGTAAAGGTAGAGGGCTTTTGTAAAAGTTGCATTTCATATAACTGTAAAAGTTATGATTTTGAAA
GTGAGTGGTTAGTCCAGCTGAATTACGCCCATGAAGAGCCGGGTTTTACCGTGCCCAGAACAGTA
GAGTAGAATGCAAGATTTGCTTGGTTACGGTTTCTAACCGACGAAGGCTTCGTTCTCACATCACC
TATCACATTATTGTTTAGTGAATCGGCTTGAATAAGGATGTGGTTTACACCCGCCTCCCTTTTCC
CTTCATTAACATGAGATTAGCCGCCCGGCCGGAAGAGCTTCCTTCTCTTGAACACGCTAGCTCAG
ATGGAGAACAGTGGCTGGTGGAACAGCCGGGAGAGAACTGACTCACACACAACGGCGAGCGGAGG
TCTTTCGTCAGCGACTTATATAATAGAAAAATAATATTAACTTAT
Found at i:152 original size:89 final size:89
Alignment explanation
Indices: 1--185 Score: 370
Period size: 89 Copynumber: 2.1 Consensus size: 89
1 AAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTA
1 AAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTA
66 GGTTTTAGTTAGTCGAAGGATACG
66 GGTTTTAGTTAGTCGAAGGATACG
90 AAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTA
1 AAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTA
155 GGTTTTAGTTAGTCGAAGGATACG
66 GGTTTTAGTTAGTCGAAGGATACG
179 AAGTAGG
1 AAGTAGG
186 CTCGACTGAT
Statistics
Matches: 96, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 96 1.00
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.23
Consensus pattern (89 bp):
AAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTA
GGTTTTAGTTAGTCGAAGGATACG
Left flanking sequence: None
Right flanking sequence: Indices 186 -- 685
CTCGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGTTAGTCGAGT
AGTAAAGGTAGAGGGCTTTTGTAAAAGTTGCATTTCATATAACTGTAAAAGTTATGATTTTGAAA
GTGAGTGGTTAGTCCAGCTGAATTACGCCCATGAAGAGCCGGGTTTTACCGTGCCCAGAACAGTA
GAGTAGAATGCAAGATTTGCTTGGTTACGGTTTCTAACCGACGAAGGCTTCGTTCTCACATCACC
TATCACATTATTGTTTAGTGAATCGGCTTGAATAAGGATGTGGTTTACACCCGCCTCCCTTTTCC
CTTCATTAACATGAGATTAGCCGCCCGGCCGGAAGAGCTTCCTTCTCTTGAACACGCTAGCTCAG
ATGGAGAACAGTGGCTGGTGGAACAGCCGGGAGAGAACTGACTCACACACAACGGCGAGCGGAGG
TCTTTCGTCAGCGACTTATATAATAGAAAAATAATATTAACTTAT
Found at i:234 original size:30 final size:30
Alignment explanation
Indices: 200--263 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
190 ACTGATATGG
200 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
1 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
230 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
1 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
260 AGAG
1 AGAG
264 GGCTTTTGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.34, C:0.06, G:0.38, T:0.22
Consensus pattern (30 bp):
AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
Left flanking sequence: Indices 1 -- 199
AAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTA
GGTTTTAGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAG
ACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCGAAGGATACGAAGTAGGCTCGACTGAT
ATGG
Right flanking sequence: Indices 264 -- 763
GGCTTTTGTAAAAGTTGCATTTCATATAACTGTAAAAGTTATGATTTTGAAAGTGAGTGGTTAGT
CCAGCTGAATTACGCCCATGAAGAGCCGGGTTTTACCGTGCCCAGAACAGTAGAGTAGAATGCAA
GATTTGCTTGGTTACGGTTTCTAACCGACGAAGGCTTCGTTCTCACATCACCTATCACATTATTG
TTTAGTGAATCGGCTTGAATAAGGATGTGGTTTACACCCGCCTCCCTTTTCCCTTCATTAACATG
AGATTAGCCGCCCGGCCGGAAGAGCTTCCTTCTCTTGAACACGCTAGCTCAGATGGAGAACAGTG
GCTGGTGGAACAGCCGGGAGAGAACTGACTCACACACAACGGCGAGCGGAGGTCTTTCGTCAGCG
ACTTATATAATAGAAAAATAATATTAACTTATGATTAAGTTTCCATTCCATTTCTTCCACTCTGA
TTAGATAAGATCAAGATATTTATATTTACTGATAATGGTGAGGTT
Found at i:5761 original size:30 final size:30
Alignment explanation
Indices: 5725--5792 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
5715 CAGTTATCAC
5725 CTCACTCTACCTTTACTACTCGACTAACGT
1 CTCACTCTACCTTTACTACTCGACTAACGT
5755 CTCACTCTACCTTTACTACTCGACTAACGT
1 CTCACTCTACCTTTACTACTCGACTAACGT
5785 CTCACTCT
1 CTCACTCT
5793 CCATATCAGT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.22, C:0.38, G:0.06, T:0.34
Consensus pattern (30 bp):
CTCACTCTACCTTTACTACTCGACTAACGT
Left flanking sequence: Indices 5225 -- 5724
TTTGTAGGAACCAAACAACAACCGGCTGACTTACTTACCAAAGCTATTAGTGAAAGTGACATGAC
TCATTTCCTCTTCAAGCTTGGAGTAAGTGATCCTTACTCTCCAGAGGGGGAGTGTTAAACTTAGT
TAAGTTAATTATAGTTTATCCATATATACATCTCAATTATATCAAAGCAGGTACAAGGAGATACA
AACATCAGGGCCCATGGACCTCCAGAAGTCGCCTACGTCTCTATAACATCTGGGCCAAGAGAGGA
CGATCCGTGCCAGGCTTTAGATAGAATATGGGCCAATGTAACGGCCCAGATCCACTAAGGATCTA
AATCCTTGTATAAATACTTATTTGGGAGAAACCCAAAATTGCTGCCGCTATTCTCTCTTAATCTA
TCTAAAACCCTAACTCTCGACACTCCCTTCTTCTCATCTATCTCTCCAACCAGTCAAGATCGATC
CTCCAATCTCTACCGCTCCGAACGACGCCGACTTACAGTTATCAC
Right flanking sequence: Indices 5793 -- 6292
CCATATCAGTCGAGCCTACTTCGTATCCTTCGACTAACTAAAACCTACCTCACTCACGCCTACCT
AACGGTTCGGTTATCACCTCACTCTACCTTTACTACTCGACTAACTTCAACCTACTTCGTAGCCT
ACTTCGTAGCCTTACAGTCGAGCCTACTTCGATTACGTCTCCGATGCGGAGTTCTCCCTCTGTCG
GTACTGGTGTGTTCATCAACCTCCAGATTGCATTCCCGGTGGCTTCACTGATGGCGCTCCATATG
GAGTTGCTGTAAGCGCAGTTCATGAAGAGGTGCTGATAAGAGGAGGAAGAAACCCGGGACCTGAG
CATGTCGTGAAAGAAGCACACTGGGTGGGCGTGCTTCGATGGGGCACAGTTGAATGTAGATATCA
TGAACGCGAGGGATACCAGGACGGCCGCCGGGCAACCACTCCCCGGAGGATCGCTAGCGCAATTT
TGATGGTGAATGTTCTCTCATGGGGCCTTGTCTAAGGCCTCTTTT
Found at i:5925 original size:12 final size:12
Alignment explanation
Indices: 5908--5953 Score: 58
Period size: 12 Copynumber: 3.8 Consensus size: 12
5898 CTAACTTCAA
5908 CCTACTTCGTAG
1 CCTACTTCGTAG
5920 CCTACTTCGTAG
1 CCTACTTCGTAG
*
5932 CCTTACAGTCG-AG
1 CC-TAC-TTCGTAG
5945 CCTACTTCG
1 CCTACTTCG
5954 ATTACGTCTC
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
11 3 0.10
12 17 0.57
13 7 0.23
14 3 0.10
ACGTcount: A:0.17, C:0.35, G:0.17, T:0.30
Consensus pattern (12 bp):
CCTACTTCGTAG
Left flanking sequence: Indices 5408 -- 5907
CAAGGAGATACAAACATCAGGGCCCATGGACCTCCAGAAGTCGCCTACGTCTCTATAACATCTGG
GCCAAGAGAGGACGATCCGTGCCAGGCTTTAGATAGAATATGGGCCAATGTAACGGCCCAGATCC
ACTAAGGATCTAAATCCTTGTATAAATACTTATTTGGGAGAAACCCAAAATTGCTGCCGCTATTC
TCTCTTAATCTATCTAAAACCCTAACTCTCGACACTCCCTTCTTCTCATCTATCTCTCCAACCAG
TCAAGATCGATCCTCCAATCTCTACCGCTCCGAACGACGCCGACTTACAGTTATCACCTCACTCT
ACCTTTACTACTCGACTAACGTCTCACTCTACCTTTACTACTCGACTAACGTCTCACTCTCCATA
TCAGTCGAGCCTACTTCGTATCCTTCGACTAACTAAAACCTACCTCACTCACGCCTACCTAACGG
TTCGGTTATCACCTCACTCTACCTTTACTACTCGACTAACTTCAA
Right flanking sequence: Indices 5954 -- 6453
ATTACGTCTCCGATGCGGAGTTCTCCCTCTGTCGGTACTGGTGTGTTCATCAACCTCCAGATTGC
ATTCCCGGTGGCTTCACTGATGGCGCTCCATATGGAGTTGCTGTAAGCGCAGTTCATGAAGAGGT
GCTGATAAGAGGAGGAAGAAACCCGGGACCTGAGCATGTCGTGAAAGAAGCACACTGGGTGGGCG
TGCTTCGATGGGGCACAGTTGAATGTAGATATCATGAACGCGAGGGATACCAGGACGGCCGCCGG
GCAACCACTCCCCGGAGGATCGCTAGCGCAATTTTGATGGTGAATGTTCTCTCATGGGGCCTTGT
CTAAGGCCTCTTTTGCACTTTTCGGAATTCGGGGCTGATCTGAGTGATGGAATATATGTTGGGAC
CGTATGAACCCAATGATTGTGATAGTTCTATGAACAATGAGAGTTCTAGGATGGCTATTCCTACC
CCAGTCGAGCCCACCGGGACCCTCTCCTATGCAGATGCAGTCGAG
Found at i:7511 original size:15 final size:15
Alignment explanation
Indices: 7491--7521 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7481 TAAGGAGAGT
*
7491 GAGACGTTAGTCGAA
1 GAGACGATAGTCGAA
7506 GAGACGATAGTCGAA
1 GAGACGATAGTCGAA
7521 G
1 G
7522 GTGAAGCGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.35, C:0.13, G:0.35, T:0.16
Consensus pattern (15 bp):
GAGACGATAGTCGAA
Left flanking sequence: Indices 6991 -- 7490
TAAGTTCCTTAAAAAACTACTCACTATCAAAATGAAAAACGATCGATTATCTACCCAAGAAGATA
GAGAGTCCCACATACGAGAAAAGGTCACAAATGGAGTTGAACCAAGTAACATTGCAAAGGCATAA
TGATAGTAGGGTCGGGATATCCCCGCCCTCCGAACCGGACGTGAGGGTCTCCCCTCATCCGGCTC
TCCGCAGGGGAATCTCCACTCACCGCTTCCCCTAATATCCTCCCTTTACCACATCATGGGGGTTT
ACAGGAGATCCCAGAGTCTCGCTCGGAAAGTCTCCCATACCTCTCTTTTTAAACAATCAATAAAT
ATCAGACTTGGGGAGTCCGTCCGGCTGCTCTTGCTGAAATCATTACTCTTTATTCTCCCGTGCTC
TAGCAATTGCGCTCCCTAGACCACTACCATGTAGTTAGGTAGGTGAGGCTCGACTGTAAGGTCCG
ACCAGCTAACGGGTACCTTAGGTAGGCTCGACTGATAAGGAGAGT
Right flanking sequence: Indices 7522 -- 8021
GTGAAGCGTTAGTCGAAAGTGAGGTGATAACCGAAGGTGAGACGCGAAGGAGAAAGGTAGATGAG
ACGCGAAGGATACGAAGTAGAGGTAATAGGAAGAATAGTGAAGGTAGAGGATACGATAGCCGAAG
GAAGGAGCTATCAATATCAAAATGAAGCTCGCTCCTCGATTCTTCATCTTATGTTATGCCGGTTC
GGTAGTAATATTCCAATACGAGACGATGGAATGCAATGGGATGGATGGTAGAGGGTTGCCTGCGC
CCAAAAACTATGATGAACTTGTCCCCTTGTCCATAGGGACCTCGTGGCATACAACCGCAACGACT
CCAGCTTCCTAGCCGCCCCTTTCTCTCTTTCTTTTGACTGCCTCGTGGATGGACTAAGGTATACT
GTAGAAGGGAATTCCCAGAACAGGGCCCGGTCCCCAGTCATTATAGAAGTAGGCTCGCGAAGTAG
ACAGCAAGCCCCCATGGTTCCTCTGTAGAACTGGAGAAGGAGGGG
Found at i:9849 original size:15 final size:15
Alignment explanation
Indices: 9825--9854 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9815 AAGGTAGGTA
*
9825 AGACGTTAGTCGAAG
1 AGACGATAGTCGAAG
9840 AGACGATAGTCGAAG
1 AGACGATAGTCGAAG
9855 GCTCGACTGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.13, G:0.33, T:0.17
Consensus pattern (15 bp):
AGACGATAGTCGAAG
Left flanking sequence: Indices 9325 -- 9824
GTCGAACCGTCATTCCAGGATTTGCAGTCCAATACATTTCCATTATGTTACCTAGCCAAACCTGC
CACCTCACGTGCCATGCCAAACCAAAGTAAGACAGACGGGTTGTTCTTCCGGATCAAGTTTTATA
CATATGATATGCGGTGGCGGGTTACCATAGAGGGGGGGAGCAAAAAGAAGTTGTACAATCCGTAC
TATACTATAACTATAGATTCCGGGACTCCGCATGTGTGAATTCTTCCTAACAAAAAAAAGCTCGA
CCGGGCCTCCCCGGGACGTCTTTCTCGAGTCAAGATGGAAAAAATAGGCCTGTTTTATATCCTGT
CTGGACAGTACATACAATACAGCCGGGGCGCAAGCGGTAGGTCATTCAATGCGCTCTTAGCAGGA
GAGGGCCCGGCAGGGAGATCGACTGATAAGGCGTTAGTCAGGTAGGTTTTAGTTAGGAGAAGGAT
ACGAAGTAGAGGAGACGATAGTCGACGGGTACCGAAAGGTAGGTA
Right flanking sequence: Indices 9855 -- 10354
GCTCGACTGATAAGGCGGTAGGTAGGCTCGACTGTACGGAGAGGAAGACGGACGACCAAAGCTCC
TCTGATTCAAACCTCACCAGAAAAACCCCATCCTCCTTGCTGTATAGACTGAACCCTGGTGCTGG
CTGAAATACCCTTTCGATATATCTTTTGAGATATGGGAAAAATGGCTTCTTTCCCATTGAGTATA
TTAGCACTGCGCTCTTCCAGTAAACCTTGTTTTTTGCTACTTCCTCTTTATCTGCCACCGCATAG
CTCACGCCCTCAGCCAAATGGAGCCTCATATTCTCCCAACCTCAGGTCCTCCTTGGCCAGGCTGT
ACCCTCCGTTAATACTGCAAATTCCCGCCCAATTTGGCTGTTGTGATGTACCCTGTTCCAGAATG
GAATTTTTTTCCAGCTGAGTAACCTTCTGTGGTGCAGGCGGGAGCTTCACCATAGCTCTATTTCT
TCTCACCTGAGGTGAGCCCACTACAGGTCCTCTTCCAGGACGGTT
Found at i:12411 original size:15 final size:15
Alignment explanation
Indices: 12387--12416 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
12377 AAGGTAGGTA
*
12387 AGACGTTAGTCGAAG
1 AGACGATAGTCGAAG
12402 AGACGATAGTCGAAG
1 AGACGATAGTCGAAG
12417 GTGAAGCGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.13, G:0.33, T:0.17
Consensus pattern (15 bp):
AGACGATAGTCGAAG
Left flanking sequence: Indices 11887 -- 12386
CACAATAGCCCAGGTGAAAACAGGGTTCCCATTACATGTGTCTGAGTTAGGGTTTGGAAGAATGA
CATCATTTCCATATGGAACACGGGCTCAACAGTAGGCCACCTTAGTGTTCTTCAATTTGGTATGA
TAACCATCTAACCAAGCCAGGACAGACTCAAAAGTCTTAGGTTTGCGGCAGTGGTCACCGCTTGC
CTCATCCTGTTTACAATATCTTCCATATATGTAAACAGTACAGTCCTGACATCACTTAGAATTAG
GTGTAGATTTAGAGGAACAAATTCCTTGCTTTAACGGAATTGAGGACAGCCGGGCCGGTGCAAAA
CAGAGGTTAGTGAACTTTTTACAGTACTAACAGTGTCTTGCATACGAGGCTGATCTACAGCCGAG
CCGGATCTAGCATAGTTGAGTAAGTAGAGGGTACCGGACGGTAGGTAAGACGTTAGGAGAAGGAT
ACGAAGTAGAGGAGACGATAGTCGACGGGTACCGAAAGGTAGGTA
Right flanking sequence: Indices 12417 -- 12916
GTGAAGCGTTAGTCGAAAGTGAGGTGATAACCGAACCGTTAGGTAGGCTACCGCTAGGTAGGCTT
AGGCTACCGCTAGGTAGGCTTAGGCTACCGCTAGGTAGGCGTGAGTGAGGTAGAGAAGACGATAG
TCGACGGGAAGACGATAGTCGTAGGGAAGATGATAGTCGTAGGGAGCTGCGATTGAAACCTTCCT
GCATCCAGTTTGCATTTGCCTTGGTCACTGTTTACTATAGATGTAGATCAATCTGTCCGGAGAGT
AAACTAGGTCTTTATTCCGCATCGTCAATGATCGTTACAGATATGAACTGAGTGCCATTTGATGA
GTCAGATCGAACAAAGGAGAGGGGTATGGAAAGGATGAAATAATGAAAGAGGAAGTCATTGCTAG
TAGGGAAGACTTGTCGCGATCCATTGGTTCATATAGAATCCATGTCCTAGGTCTATCAAAAAACA
TTCTTTTCGCTAAGCGTATATAATAAAATAGAGTGAAAGGGTCCA
Found at i:12484 original size:21 final size:21
Alignment explanation
Indices: 12460--12521 Score: 124
Period size: 21 Copynumber: 3.0 Consensus size: 21
12450 AACCGTTAGG
12460 TAGGCTACCGCTAGGTAGGCT
1 TAGGCTACCGCTAGGTAGGCT
12481 TAGGCTACCGCTAGGTAGGCT
1 TAGGCTACCGCTAGGTAGGCT
12502 TAGGCTACCGCTAGGTAGGC
1 TAGGCTACCGCTAGGTAGGC
12522 GTGAGTGAGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.19, C:0.24, G:0.34, T:0.23
Consensus pattern (21 bp):
TAGGCTACCGCTAGGTAGGCT
Left flanking sequence: Indices 11960 -- 12459
CCATATGGAACACGGGCTCAACAGTAGGCCACCTTAGTGTTCTTCAATTTGGTATGATAACCATC
TAACCAAGCCAGGACAGACTCAAAAGTCTTAGGTTTGCGGCAGTGGTCACCGCTTGCCTCATCCT
GTTTACAATATCTTCCATATATGTAAACAGTACAGTCCTGACATCACTTAGAATTAGGTGTAGAT
TTAGAGGAACAAATTCCTTGCTTTAACGGAATTGAGGACAGCCGGGCCGGTGCAAAACAGAGGTT
AGTGAACTTTTTACAGTACTAACAGTGTCTTGCATACGAGGCTGATCTACAGCCGAGCCGGATCT
AGCATAGTTGAGTAAGTAGAGGGTACCGGACGGTAGGTAAGACGTTAGGAGAAGGATACGAAGTA
GAGGAGACGATAGTCGACGGGTACCGAAAGGTAGGTAAGACGTTAGTCGAAGAGACGATAGTCGA
AGGTGAAGCGTTAGTCGAAAGTGAGGTGATAACCGAACCGTTAGG
Right flanking sequence: Indices 12522 -- 13021
GTGAGTGAGGTAGAGAAGACGATAGTCGACGGGAAGACGATAGTCGTAGGGAAGATGATAGTCGT
AGGGAGCTGCGATTGAAACCTTCCTGCATCCAGTTTGCATTTGCCTTGGTCACTGTTTACTATAG
ATGTAGATCAATCTGTCCGGAGAGTAAACTAGGTCTTTATTCCGCATCGTCAATGATCGTTACAG
ATATGAACTGAGTGCCATTTGATGAGTCAGATCGAACAAAGGAGAGGGGTATGGAAAGGATGAAA
TAATGAAAGAGGAAGTCATTGCTAGTAGGGAAGACTTGTCGCGATCCATTGGTTCATATAGAATC
CATGTCCTAGGTCTATCAAAAAACATTCTTTTCGCTAAGCGTATATAATAAAATAGAGTGAAAGG
GTCCACCTCCCAAGGGAGTACTAAACATGCGGACAGCTGAGTCCTCTCCGAACCGAAGGAGATAG
TTGCCCATCATACGGCTCACCAACTGAACTTGCCTCTAAGGGGGG
Found at i:12500 original size:15 final size:15
Alignment explanation
Indices: 12451--12480 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
12441 TGATAACCGA
*
12451 ACCGTTAGGTAGGCT
1 ACCGCTAGGTAGGCT
12466 ACCGCTAGGTAGGCT
1 ACCGCTAGGTAGGCT
12481 TAGGCTACCG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.23, G:0.33, T:0.23
Consensus pattern (15 bp):
ACCGCTAGGTAGGCT
Left flanking sequence: Indices 11951 -- 12450
ACATCATTTCCATATGGAACACGGGCTCAACAGTAGGCCACCTTAGTGTTCTTCAATTTGGTATG
ATAACCATCTAACCAAGCCAGGACAGACTCAAAAGTCTTAGGTTTGCGGCAGTGGTCACCGCTTG
CCTCATCCTGTTTACAATATCTTCCATATATGTAAACAGTACAGTCCTGACATCACTTAGAATTA
GGTGTAGATTTAGAGGAACAAATTCCTTGCTTTAACGGAATTGAGGACAGCCGGGCCGGTGCAAA
ACAGAGGTTAGTGAACTTTTTACAGTACTAACAGTGTCTTGCATACGAGGCTGATCTACAGCCGA
GCCGGATCTAGCATAGTTGAGTAAGTAGAGGGTACCGGACGGTAGGTAAGACGTTAGGAGAAGGA
TACGAAGTAGAGGAGACGATAGTCGACGGGTACCGAAAGGTAGGTAAGACGTTAGTCGAAGAGAC
GATAGTCGAAGGTGAAGCGTTAGTCGAAAGTGAGGTGATAACCGA
Right flanking sequence: Indices 12481 -- 12980
TAGGCTACCGCTAGGTAGGCTTAGGCTACCGCTAGGTAGGCGTGAGTGAGGTAGAGAAGACGATA
GTCGACGGGAAGACGATAGTCGTAGGGAAGATGATAGTCGTAGGGAGCTGCGATTGAAACCTTCC
TGCATCCAGTTTGCATTTGCCTTGGTCACTGTTTACTATAGATGTAGATCAATCTGTCCGGAGAG
TAAACTAGGTCTTTATTCCGCATCGTCAATGATCGTTACAGATATGAACTGAGTGCCATTTGATG
AGTCAGATCGAACAAAGGAGAGGGGTATGGAAAGGATGAAATAATGAAAGAGGAAGTCATTGCTA
GTAGGGAAGACTTGTCGCGATCCATTGGTTCATATAGAATCCATGTCCTAGGTCTATCAAAAAAC
ATTCTTTTCGCTAAGCGTATATAATAAAATAGAGTGAAAGGGTCCACCTCCCAAGGGAGTACTAA
ACATGCGGACAGCTGAGTCCTCTCCGAACCGAAGGAGATAGTTGC
Found at i:12559 original size:18 final size:18
Alignment explanation
Indices: 12531--12591 Score: 88
Period size: 18 Copynumber: 3.4 Consensus size: 18
12521 CGTGAGTGAG
*
12531 GTAGAGAAGACGATAGTC
1 GTAGGGAAGACGATAGTC
12549 G-ACGGGAAGACGATAGTC
1 GTA-GGGAAGACGATAGTC
*
12567 GTAGGGAAGATGATAGTC
1 GTAGGGAAGACGATAGTC
12585 GTAGGGA
1 GTAGGGA
12592 GCTGCGATTG
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
17 1 0.03
18 37 0.95
19 1 0.03
ACGTcount: A:0.34, C:0.10, G:0.39, T:0.16
Consensus pattern (18 bp):
GTAGGGAAGACGATAGTC
Left flanking sequence: Indices 12031 -- 12530
AGCCAGGACAGACTCAAAAGTCTTAGGTTTGCGGCAGTGGTCACCGCTTGCCTCATCCTGTTTAC
AATATCTTCCATATATGTAAACAGTACAGTCCTGACATCACTTAGAATTAGGTGTAGATTTAGAG
GAACAAATTCCTTGCTTTAACGGAATTGAGGACAGCCGGGCCGGTGCAAAACAGAGGTTAGTGAA
CTTTTTACAGTACTAACAGTGTCTTGCATACGAGGCTGATCTACAGCCGAGCCGGATCTAGCATA
GTTGAGTAAGTAGAGGGTACCGGACGGTAGGTAAGACGTTAGGAGAAGGATACGAAGTAGAGGAG
ACGATAGTCGACGGGTACCGAAAGGTAGGTAAGACGTTAGTCGAAGAGACGATAGTCGAAGGTGA
AGCGTTAGTCGAAAGTGAGGTGATAACCGAACCGTTAGGTAGGCTACCGCTAGGTAGGCTTAGGC
TACCGCTAGGTAGGCTTAGGCTACCGCTAGGTAGGCGTGAGTGAG
Right flanking sequence: Indices 12592 -- 13091
GCTGCGATTGAAACCTTCCTGCATCCAGTTTGCATTTGCCTTGGTCACTGTTTACTATAGATGTA
GATCAATCTGTCCGGAGAGTAAACTAGGTCTTTATTCCGCATCGTCAATGATCGTTACAGATATG
AACTGAGTGCCATTTGATGAGTCAGATCGAACAAAGGAGAGGGGTATGGAAAGGATGAAATAATG
AAAGAGGAAGTCATTGCTAGTAGGGAAGACTTGTCGCGATCCATTGGTTCATATAGAATCCATGT
CCTAGGTCTATCAAAAAACATTCTTTTCGCTAAGCGTATATAATAAAATAGAGTGAAAGGGTCCA
CCTCCCAAGGGAGTACTAAACATGCGGACAGCTGAGTCCTCTCCGAACCGAAGGAGATAGTTGCC
CATCATACGGCTCACCAACTGAACTTGCCTCTAAGGGGGGCTCGCTCCGGGCAGGTTCGGATCAC
TTACAATACATGGCTCGTGGTAGCATTTGGAAAAAAACCTTTCTC
Found at i:13257 original size:29 final size:29
Alignment explanation
Indices: 13217--13447 Score: 354
Period size: 29 Copynumber: 7.9 Consensus size: 29
13207 TAGGTGAGAC
13217 GTTAGTCGAAGGATACGAAGTAGGTTTTA
1 GTTAGTCGAAGGATACGAAGTAGGTTTTA
***
13246 GTTAGTCGAAGGATACGAAGTAGGTGAGA
1 GTTAGTCGAAGGATACGAAGTAGGTTTTA
13275 CGTTAGTCGAAGGATACGAAGTAGGTTTTA
1 -GTTAGTCGAAGGATACGAAGTAGGTTTTA
13305 GTTAGTCGAAGGATACGAAGTAGGTTTTA
1 GTTAGTCGAAGGATACGAAGTAGGTTTTA
***
13334 GTTAGTCGAAGGATACGAAGTAGGTGAGA
1 GTTAGTCGAAGGATACGAAGTAGGTTTTA
***
13363 CGTTAGTCGAAGGATACGAAGTAGGTGAGA
1 -GTTAGTCGAAGGATACGAAGTAGGTTTTA
13393 CGTTAGTCGAAGGATACGAAGTAGGTTTTA
1 -GTTAGTCGAAGGATACGAAGTAGGTTTTA
13423 GTTAGTCGAAGGATACGAAGTAGGT
1 GTTAGTCGAAGGATACGAAGTAGGT
13448 GAGACTGATA
Statistics
Matches: 188, Mismatches: 12, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
29 106 0.56
30 82 0.44
ACGTcount: A:0.32, C:0.08, G:0.34, T:0.26
Consensus pattern (29 bp):
GTTAGTCGAAGGATACGAAGTAGGTTTTA
Left flanking sequence: Indices 12717 -- 13216
ATATGAACTGAGTGCCATTTGATGAGTCAGATCGAACAAAGGAGAGGGGTATGGAAAGGATGAAA
TAATGAAAGAGGAAGTCATTGCTAGTAGGGAAGACTTGTCGCGATCCATTGGTTCATATAGAATC
CATGTCCTAGGTCTATCAAAAAACATTCTTTTCGCTAAGCGTATATAATAAAATAGAGTGAAAGG
GTCCACCTCCCAAGGGAGTACTAAACATGCGGACAGCTGAGTCCTCTCCGAACCGAAGGAGATAG
TTGCCCATCATACGGCTCACCAACTGAACTTGCCTCTAAGGGGGGCTCGCTCCGGGCAGGTTCGG
ATCACTTACAATACATGGCTCGTGGTAGCATTTGGAAAAAAACCTTTCTCCGCCATGGGGAACTA
CTGCCTTGATGTCTGAGGCGGGCCCTTGCGCCTATTTTCCTCTCAAGAGTGCGTGCTTCTCGAGG
CTCCACTCTCCCGACTCGACTGTAAGGCTACGAAGTAGGTGAGAC
Right flanking sequence: Indices 13448 -- 13947
GAGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGTTAGTCGAGTA
GTAAAGGTAGAGGAGATAGTCGCACGAGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATA
GTCGAGGGATAGGAAGTAGTGGAGACGCGACGGGGAGACGTTAGTCGAATAGTGAAGGTAGAGGA
AGTATGATCATTGTGGGAGGGGATAAGGAGTCAGGATTGAAGCCCCCCGAACCATACTTTAGATT
CCGGCCGGACAAGCAGACACTGGACAGGGGTGGGATCTGTAAATGTGTAAAGCCAAGTGTAGTGT
GGTGTAGTAGGCACCGTCCCGGCCCCTTCCCGTCCCCTGTATCACTCCATTCGGGTACTACGGAC
CCTCTGCCATCCACTGCAGCAGAGCAGGGGGGCTCCGGGGGGGCTAAGCGCAGTCCTTTGAATCA
AAGGGGTTGAATGAAATCTCTTCTTTTTTAGATATTAGATATCCG
Found at i:13292 original size:59 final size:59
Alignment explanation
Indices: 13195--13452 Score: 437
Period size: 59 Copynumber: 4.4 Consensus size: 59
13185 ACTCGACTGT
*
13195 AAGGCTACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCG
13254 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCG
*** ***
13313 AAGGATACGAAGTAGGTTTTA-GTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTA-GTTAGTCG
13372 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCG
13431 AAGGATACGAAGTAGGTGAGAC
1 AAGGATACGAAGTAGGTGAGAC
13453 TGATATGGAG
Statistics
Matches: 184, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
58 26 0.14
59 132 0.72
60 26 0.14
ACGTcount: A:0.33, C:0.09, G:0.34, T:0.24
Consensus pattern (59 bp):
AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCG
Left flanking sequence: Indices 12695 -- 13194
GCATCGTCAATGATCGTTACAGATATGAACTGAGTGCCATTTGATGAGTCAGATCGAACAAAGGA
GAGGGGTATGGAAAGGATGAAATAATGAAAGAGGAAGTCATTGCTAGTAGGGAAGACTTGTCGCG
ATCCATTGGTTCATATAGAATCCATGTCCTAGGTCTATCAAAAAACATTCTTTTCGCTAAGCGTA
TATAATAAAATAGAGTGAAAGGGTCCACCTCCCAAGGGAGTACTAAACATGCGGACAGCTGAGTC
CTCTCCGAACCGAAGGAGATAGTTGCCCATCATACGGCTCACCAACTGAACTTGCCTCTAAGGGG
GGCTCGCTCCGGGCAGGTTCGGATCACTTACAATACATGGCTCGTGGTAGCATTTGGAAAAAAAC
CTTTCTCCGCCATGGGGAACTACTGCCTTGATGTCTGAGGCGGGCCCTTGCGCCTATTTTCCTCT
CAAGAGTGCGTGCTTCTCGAGGCTCCACTCTCCCGACTCGACTGT
Right flanking sequence: Indices 13453 -- 13952
TGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGTTAGTCGAGTAGTAAA
GGTAGAGGAGATAGTCGCACGAGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCGA
GGGATAGGAAGTAGTGGAGACGCGACGGGGAGACGTTAGTCGAATAGTGAAGGTAGAGGAAGTAT
GATCATTGTGGGAGGGGATAAGGAGTCAGGATTGAAGCCCCCCGAACCATACTTTAGATTCCGGC
CGGACAAGCAGACACTGGACAGGGGTGGGATCTGTAAATGTGTAAAGCCAAGTGTAGTGTGGTGT
AGTAGGCACCGTCCCGGCCCCTTCCCGTCCCCTGTATCACTCCATTCGGGTACTACGGACCCTCT
GCCATCCACTGCAGCAGAGCAGGGGGGCTCCGGGGGGGCTAAGCGCAGTCCTTTGAATCAAAGGG
GTTGAATGAAATCTCTTCTTTTTTAGATATTAGATATCCGTACCG
Found at i:13497 original size:30 final size:30
Alignment explanation
Indices: 13461--13528 Score: 129
Period size: 30 Copynumber: 2.3 Consensus size: 30
13451 ACTGATATGG
13461 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
1 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
13491 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
1 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
13521 AGAG-GAGA
1 AGAGTGAGA
13529 TAGTCGCACG
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
29 4 0.11
30 34 0.89
ACGTcount: A:0.35, C:0.06, G:0.38, T:0.21
Consensus pattern (30 bp):
AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
Left flanking sequence: Indices 12961 -- 13460
GAACCGAAGGAGATAGTTGCCCATCATACGGCTCACCAACTGAACTTGCCTCTAAGGGGGGCTCG
CTCCGGGCAGGTTCGGATCACTTACAATACATGGCTCGTGGTAGCATTTGGAAAAAAACCTTTCT
CCGCCATGGGGAACTACTGCCTTGATGTCTGAGGCGGGCCCTTGCGCCTATTTTCCTCTCAAGAG
TGCGTGCTTCTCGAGGCTCCACTCTCCCGACTCGACTGTAAGGCTACGAAGTAGGTGAGACGTTA
GTCGAAGGATACGAAGTAGGTTTTAGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAA
GGATACGAAGTAGGTTTTAGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCGAAGGATACG
AAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTA
GGTTTTAGTTAGTCGAAGGATACGAAGTAGGTGAGACTGATATGG
Right flanking sequence: Indices 13529 -- 14028
TAGTCGCACGAGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCGAGGGATAGGAAG
TAGTGGAGACGCGACGGGGAGACGTTAGTCGAATAGTGAAGGTAGAGGAAGTATGATCATTGTGG
GAGGGGATAAGGAGTCAGGATTGAAGCCCCCCGAACCATACTTTAGATTCCGGCCGGACAAGCAG
ACACTGGACAGGGGTGGGATCTGTAAATGTGTAAAGCCAAGTGTAGTGTGGTGTAGTAGGCACCG
TCCCGGCCCCTTCCCGTCCCCTGTATCACTCCATTCGGGTACTACGGACCCTCTGCCATCCACTG
CAGCAGAGCAGGGGGGCTCCGGGGGGGCTAAGCGCAGTCCTTTGAATCAAAGGGGTTGAATGAAA
TCTCTTCTTTTTTAGATATTAGATATCCGTACCGTCTATTATAAATCTTACTATTACCAACTCAG
CCCCAAATCCTTGATTTGGCCGAGAAAGACTGCACGGCTTTGGGC
Found at i:13585 original size:19 final size:19
Alignment explanation
Indices: 13537--13586 Score: 55
Period size: 24 Copynumber: 2.4 Consensus size: 19
13527 GATAGTCGCA
13537 CGAGGGACGAGACGATAGT
1 CGAGGGACGAGACGATAGT
13556 CGACTTTAGGGACGAGACGATAGT
1 CG-----AGGGACGAGACGATAGT
13580 CGAGGGA
1 CGAGGGA
13587 TAGGAAGTAG
Statistics
Matches: 26, Mismatches: 0, Indels: 10
0.72 0.00 0.28
Matches are distributed among these distances:
19 7 0.27
24 19 0.73
ACGTcount: A:0.30, C:0.16, G:0.40, T:0.14
Consensus pattern (19 bp):
CGAGGGACGAGACGATAGT
Left flanking sequence: Indices 13037 -- 13536
TTCGGATCACTTACAATACATGGCTCGTGGTAGCATTTGGAAAAAAACCTTTCTCCGCCATGGGG
AACTACTGCCTTGATGTCTGAGGCGGGCCCTTGCGCCTATTTTCCTCTCAAGAGTGCGTGCTTCT
CGAGGCTCCACTCTCCCGACTCGACTGTAAGGCTACGAAGTAGGTGAGACGTTAGTCGAAGGATA
CGAAGTAGGTTTTAGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGT
AGGTTTTAGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCGAAGGATACGAAGTAGGTGAG
ACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTA
GTCGAAGGATACGAAGTAGGTGAGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTA
GAGTGAGACGTTAGTCGAGTAGTAAAGGTAGAGGAGATAGTCGCA
Right flanking sequence: Indices 13587 -- 14086
TAGGAAGTAGTGGAGACGCGACGGGGAGACGTTAGTCGAATAGTGAAGGTAGAGGAAGTATGATC
ATTGTGGGAGGGGATAAGGAGTCAGGATTGAAGCCCCCCGAACCATACTTTAGATTCCGGCCGGA
CAAGCAGACACTGGACAGGGGTGGGATCTGTAAATGTGTAAAGCCAAGTGTAGTGTGGTGTAGTA
GGCACCGTCCCGGCCCCTTCCCGTCCCCTGTATCACTCCATTCGGGTACTACGGACCCTCTGCCA
TCCACTGCAGCAGAGCAGGGGGGCTCCGGGGGGGCTAAGCGCAGTCCTTTGAATCAAAGGGGTTG
AATGAAATCTCTTCTTTTTTAGATATTAGATATCCGTACCGTCTATTATAAATCTTACTATTACC
AACTCAGCCCCAAATCCTTGATTTGGCCGAGAAAGACTGCACGGCTTTGGGCCCAGGAAGCAAAG
GGAATGAGCTCGGCAGCTTCTCCTCTACTACTAATTTCATTCCGG
Found at i:14267 original size:12 final size:12
Alignment explanation
Indices: 14250--14276 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
14240 CTAACTTCAA
14250 CCTACTTCGTAG
1 CCTACTTCGTAG
14262 CCTACTTCGTAG
1 CCTACTTCGTAG
14274 CCT
1 CCT
14277 TACAGTCGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.37, G:0.15, T:0.33
Consensus pattern (12 bp):
CCTACTTCGTAG
Left flanking sequence: Indices 13750 -- 14249
ATGTGTAAAGCCAAGTGTAGTGTGGTGTAGTAGGCACCGTCCCGGCCCCTTCCCGTCCCCTGTAT
CACTCCATTCGGGTACTACGGACCCTCTGCCATCCACTGCAGCAGAGCAGGGGGGCTCCGGGGGG
GCTAAGCGCAGTCCTTTGAATCAAAGGGGTTGAATGAAATCTCTTCTTTTTTAGATATTAGATAT
CCGTACCGTCTATTATAAATCTTACTATTACCAACTCAGCCCCAAATCCTTGATTTGGCCGAGAA
AGACTGCACGGCTTTGGGCCCAGGAAGCAAAGGGAATGAGCTCGGCAGCTTCTCCTCTACTACTA
ATTTCATTCCGGAGATTCCGGTCCTCTTCTTCGACTAGCGTCTCATTCGTGCGACTATCTCCTCT
ACCTTTACTACTCTTCCTATACCTCTACTTCGTATCCTTCGCGTCTCACCTACCTAACGGTACGC
TTCGGTTATCACCTCACTCTACCTTTACTACTCGACTAACTTCAA
Right flanking sequence: Indices 14277 -- 14776
TACAGTCGAGCCTTCTCCTAACTAAAACCTACCGTCCGGTAGCTTACCGTTAGCTGGTCTACTTC
GTAGCCTTGCACCTCAATCTCCGTGCCCGTTCCGCATGCGCGCGAAGCGCGCCATTGGCGCTTTG
CTCTCCTCTTATTTCAGAATTGGACGGTTCGGATGGACTTCGCCGTTCTTTCCCAAAAAGAAAAT
GGAAAGGGCTGTATCACATCGAGATGTCGATTCGTTTTCCGCCCCAAATGAGATGGGGAATTTCC
TCTGTCCCGGACTCTTTCTTCATCGAGGCCTGGCTCGCGTCGTTCCAACAACCGACGGGGAGCAC
CTCAGTATACGATCGCGCGCAGTAACTGGGAGTCCTCTCCCACTGGAGGCCAACTTCAATTCACC
AAACCCAGGTTCATCTCGTGTAGTGATTGTGGACTTGTACAAGGATATTGAGTAGACGGTTGATG
TATCAGACTCGACCCTGTTTTTCGTAGCATGCATTCCCATCCGTG
Found at i:16256 original size:18 final size:18
Alignment explanation
Indices: 16233--16273 Score: 82
Period size: 18 Copynumber: 2.3 Consensus size: 18
16223 TAAAGGTAGA
16233 GTGAGGTGATAACCGAAG
1 GTGAGGTGATAACCGAAG
16251 GTGAGGTGATAACCGAAG
1 GTGAGGTGATAACCGAAG
16269 GTGAG
1 GTGAG
16274 ACGATAGTCG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.32, C:0.10, G:0.41, T:0.17
Consensus pattern (18 bp):
GTGAGGTGATAACCGAAG
Left flanking sequence: Indices 15733 -- 16232
GAAGAGGCGTGGTTATCTTCAGTGGATTCTCTCTTTTGTAGTAGATGCCGAACCTGCTGCTCAGT
GGGCGGGCGCAGCAGCTACATGGACCCCTTCCTTTCTGTTGTTGCCAGCGCTTTCCCGGGCCGAG
CATGACTTATATATAATTATTTTTCTCAGAAAAAAGGACCTAAGGCTATATAATCCAACGGTGCC
GGGGGCCCTAGCCGACCTACTTTATATTCTTTAGATTACGGTAATTCCGCAGAGTCCAAGGGGAA
GCCCTTGATCCAAAGACAGAGGGAGGGGCCGGGGGGCTCGAACAGGTATGGGGTGGAGGTGGAGG
CCAGCCTTTCTTCTTCCCAAGGGTAGGTTCAAGGCGACCGGATGTCACGGAGTGGGCTCGACTGG
GCCCGGTGACCGAGGATAGGATACCTGAGGTAGGTTTTAGTTAGGAGAAGGATACGAAGTAGGCT
CGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGA
Right flanking sequence: Indices 16274 -- 16773
ACGATAGTCGAAGAGGGACGGAGGAATCAAATGGGGAATTAGTAGGACGGAGGAATCTATAGTTA
TAGTAGGTGAGACGTAGTCGAATAGGTCATCCATAAACCCGTCCGTTCCCTTTCGTCAAGAGGAA
TGCCGGCATACGAACGGATATCTGACCGATATTGCCTCCATTGGAACAAAGCAGACGAAGTAAGC
TGAATGGAAACCGATATTGGGACAAGGGCGGTCGTCGCTTGGCGCGAAGGCTGCGGGTTCGGGGG
TAGGGTACGGTACTAAAGGTCCTCGGACTTCCAGGCGGTTTTTCTTTTGGGGGATGTGAACCCTT
GGATCTCGCCAATACAGCCTCCTATAGTTTTCGTTACCGAGATATCTTTTTTTTTCCCAGGGATT
TCTTGGGTAATCAGCTCCCATGCTGCAAACATACCCCGCTTCGTGCTTTTCTTTCTTTCCTCGTG
GGCAGGAAGCACACCACAGCGTGCGTTGCGTGATTCCACAGTGTT
Found at i:16279 original size:18 final size:18
Alignment explanation
Indices: 16240--16279 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
16230 AGAGTGAGGT
**
16240 GATAACCGAAGGTGAGGT
1 GATAACCGAAGGTGAGAC
16258 GATAACCGAAGGTGAGAC
1 GATAACCGAAGGTGAGAC
16276 GATA
1 GATA
16280 GTCGAAGAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.38, C:0.12, G:0.35, T:0.15
Consensus pattern (18 bp):
GATAACCGAAGGTGAGAC
Left flanking sequence: Indices 15740 -- 16239
CGTGGTTATCTTCAGTGGATTCTCTCTTTTGTAGTAGATGCCGAACCTGCTGCTCAGTGGGCGGG
CGCAGCAGCTACATGGACCCCTTCCTTTCTGTTGTTGCCAGCGCTTTCCCGGGCCGAGCATGACT
TATATATAATTATTTTTCTCAGAAAAAAGGACCTAAGGCTATATAATCCAACGGTGCCGGGGGCC
CTAGCCGACCTACTTTATATTCTTTAGATTACGGTAATTCCGCAGAGTCCAAGGGGAAGCCCTTG
ATCCAAAGACAGAGGGAGGGGCCGGGGGGCTCGAACAGGTATGGGGTGGAGGTGGAGGCCAGCCT
TTCTTCTTCCCAAGGGTAGGTTCAAGGCGACCGGATGTCACGGAGTGGGCTCGACTGGGCCCGGT
GACCGAGGATAGGATACCTGAGGTAGGTTTTAGTTAGGAGAAGGATACGAAGTAGGCTCGACTGA
TATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGGT
Right flanking sequence: Indices 16280 -- 16779
GTCGAAGAGGGACGGAGGAATCAAATGGGGAATTAGTAGGACGGAGGAATCTATAGTTATAGTAG
GTGAGACGTAGTCGAATAGGTCATCCATAAACCCGTCCGTTCCCTTTCGTCAAGAGGAATGCCGG
CATACGAACGGATATCTGACCGATATTGCCTCCATTGGAACAAAGCAGACGAAGTAAGCTGAATG
GAAACCGATATTGGGACAAGGGCGGTCGTCGCTTGGCGCGAAGGCTGCGGGTTCGGGGGTAGGGT
ACGGTACTAAAGGTCCTCGGACTTCCAGGCGGTTTTTCTTTTGGGGGATGTGAACCCTTGGATCT
CGCCAATACAGCCTCCTATAGTTTTCGTTACCGAGATATCTTTTTTTTTCCCAGGGATTTCTTGG
GTAATCAGCTCCCATGCTGCAAACATACCCCGCTTCGTGCTTTTCTTTCTTTCCTCGTGGGCAGG
AAGCACACCACAGCGTGCGTTGCGTGATTCCACAGTGTTTTTTGC
Found at i:20883 original size:15 final size:15
Alignment explanation
Indices: 20863--20891 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
20853 TTCCTATCCC
20863 TCGACTATCGTCTCT
1 TCGACTATCGTCTCT
20878 TCGACTATCGTCTC
1 TCGACTATCGTCTC
20892 ACTCACGCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.34, G:0.14, T:0.38
Consensus pattern (15 bp):
TCGACTATCGTCTCT
Left flanking sequence: Indices 20363 -- 20862
GCCAGCGGCGAGCAGAAGCAAAGTTATTAGATACCGCCTGTTTTATATTTTGCCCGGCCAGAACC
ACACGTGCAAGTTTCCCTGCATGTGGCTCGTCCGTGATAACTTCTTCAGATTTGCTTTTTTTCCA
GGTAGCCGAGGGTAGGTGCAAGGGTCTGGTCGAGCCATCCCCTACGGGTCACCTCTCCCTTCCCC
GGATATACTATAGATACTTAAGTCCTCGCACTACCGTGCTCACTACTTTGTAACCTCGGTCGTTC
GATTTAACCTACTAATTCCGGCCGGCTGGACTGGCCCACTCGGGATATTCTGATTCTATAATGAC
CGTTCCGAGGCACCTTTCGCTCATCCCGCCCATCCCGACGCTAGGCGCCCTTTCTCATTATCATC
TACCGCCCTTTTTTGCCTCCCTGGCTATCGAATATCGAAGAACCCTCTCCGTCTCTACCTTTACT
ATTTTACTAACGTCTCCCCGTCGCGTCTCCACTACTTCCTATCCC
Right flanking sequence: Indices 20892 -- 21391
ACTCACGCCTGTTAGCTGGTCGTCCGTCTTCCCGTCTTCCTATACCTCGACTATCGTCTCGTCCC
TCGTGCTTCCTATACCTCGACGGGAGTCTCGTCCCTCGTGCGACTATCTCCTCTCCTATCAGTCG
AGCCTTTGGTCGTCCGTCTTCCTCTCCGTACAGTCGAGCCTTTGGTCGTCCGTCTTCGTGCGACT
ATCGTCTTCCTCTACCTTTACTACTCTTCCTATACCTCTACTTCGTATCCTGAGACTAACTAAAA
TCTACCGTCACGGCTTCGGTTATCACCTCACTCTCCTTATCAGTCGAGCCTACCTTCCGGTATCG
TTCGACTATCGTCTCTTCGACTAACGTCTTACCTACCTTTCGGTACCCGTCGACTATCGTCTCCT
CTACTTCGTATCCTTCTCCTAACTAAAACCTACCTGACTAACGCCTTACAGTCGAGCCTCTACCT
ACCGCCTTACAGTCGAACCTCAACTACGGTTATCGACTATCATCT
Found at i:20967 original size:35 final size:35
Alignment explanation
Indices: 20927--20997 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
20917 GTCTTCCCGT
* **
20927 CTTCCTATACCTCGACTATCGTCTCGTCCCTCGTG
1 CTTCCTATACCTCGACGAGAGTCTCGTCCCTCGTG
*
20962 CTTCCTATACCTCGACGGGAGTCTCGTCCCTCGTG
1 CTTCCTATACCTCGACGAGAGTCTCGTCCCTCGTG
20997 C
1 C
20998 GACTATCTCC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.11, C:0.39, G:0.18, T:0.31
Consensus pattern (35 bp):
CTTCCTATACCTCGACGAGAGTCTCGTCCCTCGTG
Left flanking sequence: Indices 20427 -- 20926
CACACGTGCAAGTTTCCCTGCATGTGGCTCGTCCGTGATAACTTCTTCAGATTTGCTTTTTTTCC
AGGTAGCCGAGGGTAGGTGCAAGGGTCTGGTCGAGCCATCCCCTACGGGTCACCTCTCCCTTCCC
CGGATATACTATAGATACTTAAGTCCTCGCACTACCGTGCTCACTACTTTGTAACCTCGGTCGTT
CGATTTAACCTACTAATTCCGGCCGGCTGGACTGGCCCACTCGGGATATTCTGATTCTATAATGA
CCGTTCCGAGGCACCTTTCGCTCATCCCGCCCATCCCGACGCTAGGCGCCCTTTCTCATTATCAT
CTACCGCCCTTTTTTGCCTCCCTGGCTATCGAATATCGAAGAACCCTCTCCGTCTCTACCTTTAC
TATTTTACTAACGTCTCCCCGTCGCGTCTCCACTACTTCCTATCCCTCGACTATCGTCTCTTCGA
CTATCGTCTCACTCACGCCTGTTAGCTGGTCGTCCGTCTTCCCGT
Right flanking sequence: Indices 20998 -- 21497
GACTATCTCCTCTCCTATCAGTCGAGCCTTTGGTCGTCCGTCTTCCTCTCCGTACAGTCGAGCCT
TTGGTCGTCCGTCTTCGTGCGACTATCGTCTTCCTCTACCTTTACTACTCTTCCTATACCTCTAC
TTCGTATCCTGAGACTAACTAAAATCTACCGTCACGGCTTCGGTTATCACCTCACTCTCCTTATC
AGTCGAGCCTACCTTCCGGTATCGTTCGACTATCGTCTCTTCGACTAACGTCTTACCTACCTTTC
GGTACCCGTCGACTATCGTCTCCTCTACTTCGTATCCTTCTCCTAACTAAAACCTACCTGACTAA
CGCCTTACAGTCGAGCCTCTACCTACCGCCTTACAGTCGAACCTCAACTACGGTTATCGACTATC
ATCTTACCTTTTACGCATGAAGATCGTCGCTGGACTTTATTAAATTGCTCGACTTCGGTTGCCGG
TGCAATAGGTAGGAGTACATTATGGCAGGATCAGTCACCCGGGCA
Found at i:21056 original size:36 final size:36
Alignment explanation
Indices: 21005--21078 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
20995 TGCGACTATC
21005 TCCTCTCCTATCAGTCGAGCCTTTGGTCGTCCGTCT
1 TCCTCTCCTATCAGTCGAGCCTTTGGTCGTCCGTCT
21041 TCCTCTCCGTA-CAGTCGAGCCTTTGGTCGTCCGTCT
1 TCCTCTCC-TATCAGTCGAGCCTTTGGTCGTCCGTCT
21077 TC
1 TC
21079 GTGCGACTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 35 0.95
37 2 0.05
ACGTcount: A:0.08, C:0.36, G:0.20, T:0.35
Consensus pattern (36 bp):
TCCTCTCCTATCAGTCGAGCCTTTGGTCGTCCGTCT
Left flanking sequence: Indices 20505 -- 21004
TAGGTGCAAGGGTCTGGTCGAGCCATCCCCTACGGGTCACCTCTCCCTTCCCCGGATATACTATA
GATACTTAAGTCCTCGCACTACCGTGCTCACTACTTTGTAACCTCGGTCGTTCGATTTAACCTAC
TAATTCCGGCCGGCTGGACTGGCCCACTCGGGATATTCTGATTCTATAATGACCGTTCCGAGGCA
CCTTTCGCTCATCCCGCCCATCCCGACGCTAGGCGCCCTTTCTCATTATCATCTACCGCCCTTTT
TTGCCTCCCTGGCTATCGAATATCGAAGAACCCTCTCCGTCTCTACCTTTACTATTTTACTAACG
TCTCCCCGTCGCGTCTCCACTACTTCCTATCCCTCGACTATCGTCTCTTCGACTATCGTCTCACT
CACGCCTGTTAGCTGGTCGTCCGTCTTCCCGTCTTCCTATACCTCGACTATCGTCTCGTCCCTCG
TGCTTCCTATACCTCGACGGGAGTCTCGTCCCTCGTGCGACTATC
Right flanking sequence: Indices 21079 -- 21578
GTGCGACTATCGTCTTCCTCTACCTTTACTACTCTTCCTATACCTCTACTTCGTATCCTGAGACT
AACTAAAATCTACCGTCACGGCTTCGGTTATCACCTCACTCTCCTTATCAGTCGAGCCTACCTTC
CGGTATCGTTCGACTATCGTCTCTTCGACTAACGTCTTACCTACCTTTCGGTACCCGTCGACTAT
CGTCTCCTCTACTTCGTATCCTTCTCCTAACTAAAACCTACCTGACTAACGCCTTACAGTCGAGC
CTCTACCTACCGCCTTACAGTCGAACCTCAACTACGGTTATCGACTATCATCTTACCTTTTACGC
ATGAAGATCGTCGCTGGACTTTATTAAATTGCTCGACTTCGGTTGCCGGTGCAATAGGTAGGAGT
ACATTATGGCAGGATCAGTCACCCGGGCAAACCAACCCTCCTCCAAGAAGAATTGTGCTATGCCC
CCCCCTGTGACCCCCAGTGGTTGGTATGGAAGAACTGCCTGGTGA
Found at i:21116 original size:20 final size:20
Alignment explanation
Indices: 21091--21128 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
21081 GCGACTATCG
* *
21091 TCTTCCTCTACCTTTACTAC
1 TCTTCCTATACCTCTACTAC
21111 TCTTCCTATACCTCTACT
1 TCTTCCTATACCTCTACT
21129 TCGTATCCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.16, C:0.39, G:0.00, T:0.45
Consensus pattern (20 bp):
TCTTCCTATACCTCTACTAC
Left flanking sequence: Indices 20591 -- 21090
CCGTGCTCACTACTTTGTAACCTCGGTCGTTCGATTTAACCTACTAATTCCGGCCGGCTGGACTG
GCCCACTCGGGATATTCTGATTCTATAATGACCGTTCCGAGGCACCTTTCGCTCATCCCGCCCAT
CCCGACGCTAGGCGCCCTTTCTCATTATCATCTACCGCCCTTTTTTGCCTCCCTGGCTATCGAAT
ATCGAAGAACCCTCTCCGTCTCTACCTTTACTATTTTACTAACGTCTCCCCGTCGCGTCTCCACT
ACTTCCTATCCCTCGACTATCGTCTCTTCGACTATCGTCTCACTCACGCCTGTTAGCTGGTCGTC
CGTCTTCCCGTCTTCCTATACCTCGACTATCGTCTCGTCCCTCGTGCTTCCTATACCTCGACGGG
AGTCTCGTCCCTCGTGCGACTATCTCCTCTCCTATCAGTCGAGCCTTTGGTCGTCCGTCTTCCTC
TCCGTACAGTCGAGCCTTTGGTCGTCCGTCTTCGTGCGACTATCG
Right flanking sequence: Indices 21129 -- 21628
TCGTATCCTGAGACTAACTAAAATCTACCGTCACGGCTTCGGTTATCACCTCACTCTCCTTATCA
GTCGAGCCTACCTTCCGGTATCGTTCGACTATCGTCTCTTCGACTAACGTCTTACCTACCTTTCG
GTACCCGTCGACTATCGTCTCCTCTACTTCGTATCCTTCTCCTAACTAAAACCTACCTGACTAAC
GCCTTACAGTCGAGCCTCTACCTACCGCCTTACAGTCGAACCTCAACTACGGTTATCGACTATCA
TCTTACCTTTTACGCATGAAGATCGTCGCTGGACTTTATTAAATTGCTCGACTTCGGTTGCCGGT
GCAATAGGTAGGAGTACATTATGGCAGGATCAGTCACCCGGGCAAACCAACCCTCCTCCAAGAAG
AATTGTGCTATGCCCCCCCCTGTGACCCCCAGTGGTTGGTATGGAAGAACTGCCTGGTGATCCCT
AGGTTGCAGCACGTCCGGTCTCATCTCCTGCGACTGGCGTCTTGT
Found at i:22464 original size:17 final size:17
Alignment explanation
Indices: 22442--22476 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
22432 CTACATCTTC
22442 TCTATCTCTTACCGAGT
1 TCTATCTCTTACCGAGT
22459 TCTATCTCTTACCGAGT
1 TCTATCTCTTACCGAGT
22476 T
1 T
22477 GCTGTGTCCG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.29, G:0.11, T:0.43
Consensus pattern (17 bp):
TCTATCTCTTACCGAGT
Left flanking sequence: Indices 21942 -- 22441
AAGCCAACCCACATTACTGACTAACGGTGGATAATCATCTTTCTTAGAGGTACTAAATACAACTC
CATTCATGAGCAAAATGAAGGTTGCGTTAATGAGAAAGATCTCTGGGGAAACCGCTAAAAAAAGA
TTGAACATGTGGGTGGGAGGGAGGAGAGAAAACGAATTCTGCTTTCATTTCCGGCTAATAATTCC
GGAGCACTGAGTTACTTATGGCCGGAATCTTATGCTTTCTATAGTTTAGTAGTGCCGGAATGGGC
TGTTGACGGAATCTATAGTTGGGGAATTAGTAGTACGCGTTAGCACGCTCAATTGTCGGGATCCG
TGGTGCCTTTTTCTTTAGAGAACTTATGGGTGGGGTAAAGATGAGATGCTTTAGGCGCAGTGGAT
TGGATAAAGAAAGAGTTCCACCCACTTATATATTATATACATAAGTTTAGTATCTCTTATACCCG
CCGCGCTGCTGTGTCTATATCTTCTCTATCTCTTACTACATCTTC
Right flanking sequence: Indices 22477 -- 22976
GCTGTGTCCGTGTTGCTGCTGTGTCCGCGTTGCTGCGTCAGAGGAGAGTTCGCGTTGCTGTGTGT
CTTGGCTGTGTCGGGGAGTTAGAGAGTTTGTTGATCCAAACTTGCAAAGTCCTGTCTCATATATG
TGCAAACCTAGCAAACACTATTTCCCTAGTTGACTGTAAAACCTTGTGAAGCAAGGAAACTAACT
CACATCTATATACGCTTCTTCCCCGTCCGTAGTTCCACTATGGGTGTAGAAAAGGGTGGTAATCG
TTCCGTCTCTGGTTCCATCTTTCTTTCTGATGTTAAGCCACCTTTTGATGCAAGTTCGTTGAGTA
ATTGCGGATCAATGGTACTTGGAATGGCTCTCTCATATTGATCAATTCTTTCTAGTGGCATTCGA
TCACAGAAGCCGTTGACAGCTGCATAAATTACTATAATTTGTTTTTCAATGGGCAGTGGTTCATA
TTGTGGTTGTTTTGGAACTTCTGTTAGCCTTGCACCTCTATTTAG
Found at i:22498 original size:17 final size:17
Alignment explanation
Indices: 22476--22512 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
22466 CTTACCGAGT
*
22476 TGCTGTGTCCGTGTTGC
1 TGCTGTGTCCGCGTTGC
22493 TGCTGTGTCCGCGTTGC
1 TGCTGTGTCCGCGTTGC
22510 TGC
1 TGC
22513 GTCAGAGGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.00, C:0.27, G:0.35, T:0.38
Consensus pattern (17 bp):
TGCTGTGTCCGCGTTGC
Left flanking sequence: Indices 21976 -- 22475
TCATCTTTCTTAGAGGTACTAAATACAACTCCATTCATGAGCAAAATGAAGGTTGCGTTAATGAG
AAAGATCTCTGGGGAAACCGCTAAAAAAAGATTGAACATGTGGGTGGGAGGGAGGAGAGAAAACG
AATTCTGCTTTCATTTCCGGCTAATAATTCCGGAGCACTGAGTTACTTATGGCCGGAATCTTATG
CTTTCTATAGTTTAGTAGTGCCGGAATGGGCTGTTGACGGAATCTATAGTTGGGGAATTAGTAGT
ACGCGTTAGCACGCTCAATTGTCGGGATCCGTGGTGCCTTTTTCTTTAGAGAACTTATGGGTGGG
GTAAAGATGAGATGCTTTAGGCGCAGTGGATTGGATAAAGAAAGAGTTCCACCCACTTATATATT
ATATACATAAGTTTAGTATCTCTTATACCCGCCGCGCTGCTGTGTCTATATCTTCTCTATCTCTT
ACTACATCTTCTCTATCTCTTACCGAGTTCTATCTCTTACCGAGT
Right flanking sequence: Indices 22513 -- 23012
GTCAGAGGAGAGTTCGCGTTGCTGTGTGTCTTGGCTGTGTCGGGGAGTTAGAGAGTTTGTTGATC
CAAACTTGCAAAGTCCTGTCTCATATATGTGCAAACCTAGCAAACACTATTTCCCTAGTTGACTG
TAAAACCTTGTGAAGCAAGGAAACTAACTCACATCTATATACGCTTCTTCCCCGTCCGTAGTTCC
ACTATGGGTGTAGAAAAGGGTGGTAATCGTTCCGTCTCTGGTTCCATCTTTCTTTCTGATGTTAA
GCCACCTTTTGATGCAAGTTCGTTGAGTAATTGCGGATCAATGGTACTTGGAATGGCTCTCTCAT
ATTGATCAATTCTTTCTAGTGGCATTCGATCACAGAAGCCGTTGACAGCTGCATAAATTACTATA
ATTTGTTTTTCAATGGGCAGTGGTTCATATTGTGGTTGTTTTGGAACTTCTGTTAGCCTTGCACC
TCTATTTAGTAATGCTTGAGTGGCAGCATCAAGGTCTGAGCCAAA
Found at i:32988 original size:18 final size:18
Alignment explanation
Indices: 32965--33002 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
32955 AGCGGGTACG
32965 TCCGCGAGAGGACTGTGA
1 TCCGCGAGAGGACTGTGA
32983 TCCGCGAGAGGACTGTGA
1 TCCGCGAGAGGACTGTGA
33001 TC
1 TC
33003 TGCGTGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.24, G:0.37, T:0.18
Consensus pattern (18 bp):
TCCGCGAGAGGACTGTGA
Left flanking sequence: Indices 32465 -- 32964
AAAGCGTCAGTAAGACCAAACAGAGAGTTAGCAGCATAGACAAGGATGGATTTGTGAATGAGAAA
TAGATATTTTCCACCTTCATCCCAATGAATGGGTTAATACCAAATTGATCAAGTGGGCTTCCGCT
ACCCGGACCCATCCAGGGGTTATCATCGTAACTACCTTCACCAGTACTATCCCAGGCTGGACGAG
TACTACCAGCATCCGTCCCGCTCCCAGCATCCCCTTTGCCCTGATTGGATGAACCCACTCCATCC
TGGCCCGGCTGCGCTTCAGCCTCGACTCCCCCTGTCCTCTCTTCGCTGGATCTAATACTGTGTGA
AGCGGGTACGTCCGCGAGAGGACTGTGATCTACGTGGCCTATTGGAGCATTTGCCACTCCTTCCT
GTGGAAAGCCCGGCAGCGCTTCAGCCTCGACTCCCCCTATAACGACATCCCAGGAATTGTAATAA
CTGGCGACCCATTTCCCCGGTTCGGAAATGTGTGAAGCGGGTACG
Right flanking sequence: Indices 33003 -- 33502
TGCGTGGCCGGGACTGGACGAGGAAGAGCCCTCATCGGGATCGTGGGAAGTGTCACTGTCAGGCG
TTTCACCATCATTCGATGTAATTCCAGTTCCAACCATTGCCAGTTTTGCGTCTAAGTTGTTGTTA
TTATTTGTCCCCCGCCCCGGAGCTCCACCAACAGACACCCCGTCTTCCATTAACCCATTTCGGGC
TCTGAAACTCCTGATGACAAATATGGATGGTACGAAAACGAAAATCAGAATGAGGAAGAAAAAGA
TATCGTGATGTAAGTCATTTATTCCTTGCAGGAGAAGTGTTGCTGCGTCTCTTAATCCTAATTGC
CATGCATCACAAGGAGCGATTATGAGGTGGATGAATGAAATAGACAATGAAAAGATCAATTTTCC
GAACACTAATACAATAAGTAGATACATTTAGATAGAGTGTATTCAAATAAAGCCACAAATCAGAC
AATAGTTATACGTTCGGAAGAAAGGTCTCTGGTTATGCTTCTTCC
Found at i:33606 original size:62 final size:62
Alignment explanation
Indices: 33509--33628 Score: 240
Period size: 62 Copynumber: 1.9 Consensus size: 62
33499 TTCCTATACC
33509 TCGACTATCGTCTCGTCCCGGTCGTCCTAAACTCTCCTGAGACTATCGTCTCGTCCCTAAAG
1 TCGACTATCGTCTCGTCCCGGTCGTCCTAAACTCTCCTGAGACTATCGTCTCGTCCCTAAAG
33571 TCGACTATCGTCTCGTCCCGGTCGTCCTAAACTCTCCTGAGACTATCGTCTCGTCCCT
1 TCGACTATCGTCTCGTCCCGGTCGTCCTAAACTCTCCTGAGACTATCGTCTCGTCCCT
33629 CGTGCGACTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.16, C:0.37, G:0.17, T:0.30
Consensus pattern (62 bp):
TCGACTATCGTCTCGTCCCGGTCGTCCTAAACTCTCCTGAGACTATCGTCTCGTCCCTAAAG
Left flanking sequence: Indices 33009 -- 33508
GCCGGGACTGGACGAGGAAGAGCCCTCATCGGGATCGTGGGAAGTGTCACTGTCAGGCGTTTCAC
CATCATTCGATGTAATTCCAGTTCCAACCATTGCCAGTTTTGCGTCTAAGTTGTTGTTATTATTT
GTCCCCCGCCCCGGAGCTCCACCAACAGACACCCCGTCTTCCATTAACCCATTTCGGGCTCTGAA
ACTCCTGATGACAAATATGGATGGTACGAAAACGAAAATCAGAATGAGGAAGAAAAAGATATCGT
GATGTAAGTCATTTATTCCTTGCAGGAGAAGTGTTGCTGCGTCTCTTAATCCTAATTGCCATGCA
TCACAAGGAGCGATTATGAGGTGGATGAATGAAATAGACAATGAAAAGATCAATTTTCCGAACAC
TAATACAATAAGTAGATACATTTAGATAGAGTGTATTCAAATAAAGCCACAAATCAGACAATAGT
TATACGTTCGGAAGAAAGGTCTCTGGTTATGCTTCTTCCTATACC
Right flanking sequence: Indices 33629 -- 34128
CGTGCGACTATCTCCTCTCCTATCAGTCGAGCCTTTGGTCGTCCGTCTTCCTCTCCCTATCGGTC
GAGCCTTTGGTCGTCCGTCTTCCTATCCCTTACGGGAATCGAACCCGTGTCTTCGACATGAAAAG
ACGATGTCCTAACCACTGGACGAAAGGGACCAAAAAGAAATTCGAGTCTTATGGTTCACTTTTCA
CAAAGGGGCAAAGCACGATAGGTTTCTCACAGTGGCTAACAAGTTTCCTTGTCCGCGTTGCTGGG
TTAAATCTAGTACACTCAGACTTTCACTTACTATACGTAAGTCCATGGAATCTGAAACACAGGTC
TAAATCGCAATTGTCTCTACAATAAACAACAATCTCATAAACTTGGTTGTCGCGAATGAGAGGTT
TCACCGTATAACCCAATATGTGCGTAAAACTTCAAAAGAATGATACCATCGAAACTCACAGCTTT
TAGAAAAAGAAGAGGGCAAGAACGGAAGAGTTTAACGGAGATAGG
Found at i:33695 original size:37 final size:37
Alignment explanation
Indices: 33641--33723 Score: 141
Period size: 37 Copynumber: 2.3 Consensus size: 37
33631 TGCGACTATC
33641 TCCTCT-CCTATCAGTCGAGCCTTTGGTCGTCCGTCT
1 TCCTCTCCCTATCAGTCGAGCCTTTGGTCGTCCGTCT
*
33677 TCCTCTCCCTATCGGTCGAGCCTTTGGTCGTCCGTCT
1 TCCTCTCCCTATCAGTCGAGCCTTTGGTCGTCCGTCT
*
33714 TCCTATCCCT
1 TCCTCTCCCT
33724 TACGGGAATC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
36 6 0.14
37 38 0.86
ACGTcount: A:0.07, C:0.39, G:0.18, T:0.36
Consensus pattern (37 bp):
TCCTCTCCCTATCAGTCGAGCCTTTGGTCGTCCGTCT
Left flanking sequence: Indices 33141 -- 33640
CCCCCGCCCCGGAGCTCCACCAACAGACACCCCGTCTTCCATTAACCCATTTCGGGCTCTGAAAC
TCCTGATGACAAATATGGATGGTACGAAAACGAAAATCAGAATGAGGAAGAAAAAGATATCGTGA
TGTAAGTCATTTATTCCTTGCAGGAGAAGTGTTGCTGCGTCTCTTAATCCTAATTGCCATGCATC
ACAAGGAGCGATTATGAGGTGGATGAATGAAATAGACAATGAAAAGATCAATTTTCCGAACACTA
ATACAATAAGTAGATACATTTAGATAGAGTGTATTCAAATAAAGCCACAAATCAGACAATAGTTA
TACGTTCGGAAGAAAGGTCTCTGGTTATGCTTCTTCCTATACCTCGACTATCGTCTCGTCCCGGT
CGTCCTAAACTCTCCTGAGACTATCGTCTCGTCCCTAAAGTCGACTATCGTCTCGTCCCGGTCGT
CCTAAACTCTCCTGAGACTATCGTCTCGTCCCTCGTGCGACTATC
Right flanking sequence: Indices 33724 -- 34223
TACGGGAATCGAACCCGTGTCTTCGACATGAAAAGACGATGTCCTAACCACTGGACGAAAGGGAC
CAAAAAGAAATTCGAGTCTTATGGTTCACTTTTCACAAAGGGGCAAAGCACGATAGGTTTCTCAC
AGTGGCTAACAAGTTTCCTTGTCCGCGTTGCTGGGTTAAATCTAGTACACTCAGACTTTCACTTA
CTATACGTAAGTCCATGGAATCTGAAACACAGGTCTAAATCGCAATTGTCTCTACAATAAACAAC
AATCTCATAAACTTGGTTGTCGCGAATGAGAGGTTTCACCGTATAACCCAATATGTGCGTAAAAC
TTCAAAAGAATGATACCATCGAAACTCACAGCTTTTAGAAAAAGAAGAGGGCAAGAACGGAAGAG
TTTAACGGAGATAGGAAACTCAATATGAAAGTGGAGAAGGATACGAAGTAGAGGAGACGATAGTC
GAAGGAAAACATCGACGAAAGACTTGGGACTGGAATCAGAATATC
Found at i:41098 original size:27 final size:27
Alignment explanation
Indices: 41058--41111 Score: 90
Period size: 27 Copynumber: 2.0 Consensus size: 27
41048 GGTTCACTGG
* *
41058 TCTGTCGTCTTCCTCATTATAGTCCTC
1 TCTGTCGTCCTCCTCACTATAGTCCTC
41085 TCTGTCGTCCTCCTCACTATAGTCCTC
1 TCTGTCGTCCTCCTCACTATAGTCCTC
41112 CTAGAATCCA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.11, C:0.37, G:0.11, T:0.41
Consensus pattern (27 bp):
TCTGTCGTCCTCCTCACTATAGTCCTC
Left flanking sequence: Indices 40558 -- 41057
TTAGAAGAGAGATCGCGCCGCGATGGCGGCCACAGACGAATATCTATCGAGCATGGCAAATGCTG
CTAGAGAAAAGGACAACTACACCAACGGAGTCGCTTGCACTGCACTTTTCTACGGCCACGCGAGA
CTGGTGTCCGGTGGCAGGTCGGTGGAAGGCTGGCTAAGCGGGCATGGGCAGCAGAGCTCTCGTGA
CTAAGCAACAACCCCTAGCATACTTTCGTCGATGAAGCAGAACGGCCGGCCGGGAATAGAAGAGG
TTTTGAGTGAAGTGAACTCGCCTCTCCGGGGCTGTAGCTAGCGACGTAGTTCCAACCACTTTCGT
AGTTGTAGTTCCTGAACTGACTTGACTAAGCCCTGCGCGCCAGAGAGCAAGCGTAGTGAGTACAA
TGGACTAGTAGGTCCGGAATTACCGGAATTTGTGGAAGAAAGGTCATTCAATGCGCTCAGGTTCA
AGGGTGAACCTAACCCTCGGGCCCTATATAGTGCGGGTTCACTGG
Right flanking sequence: Indices 41112 -- 41611
CTAGAATCCAACGCATTTCGTCTCCATACATCCTGCCTTTTCACCTTTGTAGTCCTATGCATAGT
TAGTACTATAGCCCCAATCATGGCTACTAATAAAATCAGACTAGGAAGCAAAAACCAGACGGAAT
AGTAGGTATAAAGTAAATTGCCCAATGTTTCCAAATTTGTCCAACTTCGTACCTTTCCGGCATGA
ACCGTATATCTCAGAGAGGTCGTATTTATGTGGGTTGGTAGTAATGGAATGGTTTCATTATCTAA
AATGAAGAACATTTCCCACCAAAGGATCAGTCCAATAATACCACTCACTGGTAAATAGCGCAAGA
CTGATTCGTGAATCTCCTCCCTTTGAATATTGAACATCATAACCACGAATAGGAATGAAACGGCA
ATAGCTCCTATATGAACTACTGGGAAGATCATAGCGGAGAAGTCGAGACCTAATAAAATAAGTAA
CCCAGAAGTGTCGCGAAAGACGGGGATGGGAAACGAAACGGAATG
Found at i:41947 original size:30 final size:33
Alignment explanation
Indices: 41911--41975 Score: 91
Period size: 30 Copynumber: 2.1 Consensus size: 33
41901 CGCCCGTCGA
* *
41911 CTATCGTCTCCTCTA-C-TTC-GTATCCTTCTC
1 CTATCGTCTCATCTACCTTTCGGTACCCTTCTC
41941 CTATCGTCTCATCTACCTTTCGGTACCCTTCTC
1 CTATCGTCTCATCTACCTTTCGGTACCCTTCTC
41974 CT
1 CT
41976 GAGACGTAGA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
30 14 0.47
31 1 0.03
32 3 0.10
33 12 0.40
ACGTcount: A:0.11, C:0.40, G:0.08, T:0.42
Consensus pattern (33 bp):
CTATCGTCTCATCTACCTTTCGGTACCCTTCTC
Left flanking sequence: Indices 41411 -- 41910
ACCACTCACTGGTAAATAGCGCAAGACTGATTCGTGAATCTCCTCCCTTTGAATATTGAACATCA
TAACCACGAATAGGAATGAAACGGCAATAGCTCCTATATGAACTACTGGGAAGATCATAGCGGAG
AAGTCGAGACCTAATAAAATAAGTAACCCAGAAGTGTCGCGAAAGACGGGGATGGGAAACGAAAC
GGAATGTACCGGATTTTTAGCACGTACAACCATCAAACCAGAGACCAAAGCAGGACTCGACAAAA
CAGAAAGTATCATGGTACGTCGTCCTTCCGGAACTTGAATGAGTCTTCTTGCTCCAGCATTCAAG
TCGATCTATTACGACCAGCGCGGTTGTTCGTATTTCATTTTATTCTTCCAATCCAAGCGGTGCTA
ACGCTTCGCTACAGTTACGGCTGGAGGTTCCGGGTGCGCTCTCAACTACTTCCTATGCTTCGACT
ATCGTCTCTTCTTCCTAATACCTCGACTATCGTCTCGCCCGTCGA
Right flanking sequence: Indices 41976 -- 42475
GAGACGTAGACTGAAGGAGGCTCTATGGAGCCGGGGGAAGATCGTCGCAGACTATCTATCTACCT
CTCCAGACACAATATCTTGAGTACCTATGATGGTGACTACATCTGCTGGCATGTGATGTTTGGAC
ATAGAATCGAGTCCTTGTAAATGGGCAGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATT
GCTTCCATTACTGACCAGAAAGACACCAAACTCTCCTTTAGGTGCTTCAACTGCGGTATAGGTAG
AAGGAGCTGGTACGGAAAAACCCTCTGTATAAGGTTCGAAATGGTGAATTGAGGTAGAGTAGACT
TGGCCGGCAGTGGAAAGAAAAAGCGTCACGTCACATCTGCTCCCAACCCTTATGTTGTATGTCCC
CGCCGGTCCCATCTCTCTCCAGACCTAACGTGGTAGTTTCCCATCATAGGGCTTTCGGTATATAG
ATTGAGCCATTACCAAGGATCCCATTCGTTCAGAACTCAGTTGAC
Found at i:44040 original size:15 final size:15
Alignment explanation
Indices: 44020--44048 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
44010 TTCCTATCCC
44020 TCGACTATCGTCTCT
1 TCGACTATCGTCTCT
44035 TCGACTATCGTCTC
1 TCGACTATCGTCTC
44049 ACTCACGCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.34, G:0.14, T:0.38
Consensus pattern (15 bp):
TCGACTATCGTCTCT
Left flanking sequence: Indices 43520 -- 44019
GGCCCACCACTGGACTTGCACTGGGGCCCGGGCCGAGTCAGTGGGGGGACCCTGTCGGGCTCCTT
CCCCCCCCAAAACAAACTGTACGTGGGAGTTTCCCTTCATACGGCTCAAATCATTCTCAGATGCC
CCGAGAGACATCCTTTCCTTTGGAGAGTCATCCCCCACCCAACAAGACCCCCGGGTTGGTTCACG
CGCGCGCAAACGAGCACTGACCGCGCGGGGAACTATGACCAATAGAGTCAGACACAGAATTCCGA
GCGTCTTTTGTTTATCCGTTCGGGCTTTGCAATGGTCTTGACAGTACAGCAGCTCCAACTTTTGT
TCAAAAAATTGTAACTAATAACATGCTCCAACTTTTGTTCCCTCCTAGCCTCGGTCACCTTCGTC
TACCACAACTATCACAACTACCGCTTCTTGATCAACCACAACTCTTACGACTATCGTCTCACCTA
CGACTATCCTACCGGCTCGGTAGTACCTACACTTCTTCCTATCCC
Right flanking sequence: Indices 44049 -- 44548
ACTCACGCCTGTTAGCTGGTCGTCCGTCTCAACTACGACTATCACCTTCCCTACGACTATCGTCT
CACTGGAGCCTCACCTACGACTATCGTCTTCTTCGGTTATCACCTCACCTACCTGACTACCGCCT
TATCAGTCGAGCCTCCCGTTGGTCGTCCTAAAACCTACTTCGTAGCCTACCTCACGGTATCCTAC
CTCACGGTATCCTACTTCGTAGCCTTCCCTATCAGCCTGCCTCGGTCTCCTTTTAGTAGTAGAAT
AACGCAACTGCTGCCAGGCCGCCGGTCCTATATAGAAGTATGTCCTGGTCACCGGAATCCCTGGT
CATTTGCACCGGAATTAGTAGTACGCGTTAGCACGCCTCTTGCTGGGCTGGCTTCTCAATACCAT
CTCTGGGGGCGCGGGACGCTCGCTCTGTCCGTGCCTGCCAAAAAAATATTCTATTAAGCTAAGCC
GGTGGGGACAGGTCGTTCTTGGGCAGATCCCGCTCCCGGCCGGCT
Found at i:44244 original size:15 final size:15
Alignment explanation
Indices: 44224--44258 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
44214 TACTTCGTAG
44224 CCTACCTCACGGTAT
1 CCTACCTCACGGTAT
44239 CCTACCTCACGGTAT
1 CCTACCTCACGGTAT
44254 CCTAC
1 CCTAC
44259 TTCGTAGCCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.20, C:0.43, G:0.11, T:0.26
Consensus pattern (15 bp):
CCTACCTCACGGTAT
Left flanking sequence: Indices 43724 -- 44223
ACGAGCACTGACCGCGCGGGGAACTATGACCAATAGAGTCAGACACAGAATTCCGAGCGTCTTTT
GTTTATCCGTTCGGGCTTTGCAATGGTCTTGACAGTACAGCAGCTCCAACTTTTGTTCAAAAAAT
TGTAACTAATAACATGCTCCAACTTTTGTTCCCTCCTAGCCTCGGTCACCTTCGTCTACCACAAC
TATCACAACTACCGCTTCTTGATCAACCACAACTCTTACGACTATCGTCTCACCTACGACTATCC
TACCGGCTCGGTAGTACCTACACTTCTTCCTATCCCTCGACTATCGTCTCTTCGACTATCGTCTC
ACTCACGCCTGTTAGCTGGTCGTCCGTCTCAACTACGACTATCACCTTCCCTACGACTATCGTCT
CACTGGAGCCTCACCTACGACTATCGTCTTCTTCGGTTATCACCTCACCTACCTGACTACCGCCT
TATCAGTCGAGCCTCCCGTTGGTCGTCCTAAAACCTACTTCGTAG
Right flanking sequence: Indices 44259 -- 44758
TTCGTAGCCTTCCCTATCAGCCTGCCTCGGTCTCCTTTTAGTAGTAGAATAACGCAACTGCTGCC
AGGCCGCCGGTCCTATATAGAAGTATGTCCTGGTCACCGGAATCCCTGGTCATTTGCACCGGAAT
TAGTAGTACGCGTTAGCACGCCTCTTGCTGGGCTGGCTTCTCAATACCATCTCTGGGGGCGCGGG
ACGCTCGCTCTGTCCGTGCCTGCCAAAAAAATATTCTATTAAGCTAAGCCGGTGGGGACAGGTCG
TTCTTGGGCAGATCCCGCTCCCGGCCGGCTTAGTGGAGGAGTCCCCGGAGTATCCGGTACCTCCC
GCCCGAGAGTCGGTCGAAATAATCCTCCAGGCGACCACGGCAAGGGATGATTGGCGAGCTGATCT
GCTTTGATCCAGGAGAAAGCCCAGTCAGCCACCTGGGTCACGTGACCTGCAGCTCGTCGCTTTTT
GAGGCTTCCTCTACCCACATCTCTATGTGCTCGCAGCACTTCCAT
Found at i:49221 original size:18 final size:18
Alignment explanation
Indices: 49169--49223 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
49159 TACCTAACGG
*
49169 TTCGGTTATCACCTCACT
1 TTCGGTTATCACCTCACC
** * * *
49187 TTCGACTAACGCTTCACC
1 TTCGGTTATCACCTCACC
49205 TTCGGTTATCACCTCACC
1 TTCGGTTATCACCTCACC
49223 T
1 T
49224 ACCTAGCTCG
Statistics
Matches: 26, Mismatches: 11, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.18, C:0.36, G:0.11, T:0.35
Consensus pattern (18 bp):
TTCGGTTATCACCTCACC
Left flanking sequence: Indices 48669 -- 49168
TTTTTGCCTTGCATGCAAGCGACCCTGGTGGCCCTCGAATAGAAAGACTGAGCGATGATTGATGC
AGGCCTACCCGGCAGGACTCGATTGTTCCAGAGAGAAGGATCATGGCGCCCCGGAACCATGACAT
CCAGCAGCATCATCTCCTTGCGTGCAAGAGACTTCTATTAAACCGGGCCGACTACATCTCCTATC
GACCCGGTTCTGTGTTGAAAAAAGGCCCTGCAGTTATATTAATTCTTGCTTCTTCTTTTTTTTTG
CCAAGCAATCAAACGCTTCGCTACAGTTACGAAATCCGGTTCCGGGAAAAGTCATCCTGACTCTC
TGCCTTGCTTCCTATCTCCAAAGCAAATCATCCTTCAAGTATGATCCTCCTTTACTACTACATAC
TCCTTCTACTATCGTCTCACCCTCTACCTTCACTATTCTTCCTATTACCTCTACTTCGTATCCTT
CGCGTCTCATCTACCTTTCTCCTTCGCGTCTCAACTACCTAACGG
Right flanking sequence: Indices 49224 -- 49723
ACCTAGCTCGCACCTCACTTTCGACTAACTAAAACCTCACTTTCGACTAACGTCTCAACTACCTA
GCTCGCACCTCACTTTCTTACCTTCGGTTATCACCTCACTCTCCATATCAGTCGAGCCTTCGACT
AACTAAAACCTACCTTGCGGTACCCGTCGACTATCGTCTCCTCTACTTCGTATCCTTCTCCTAAC
TAAAACCTAGCCTCGGTCACCTACTTCATACCCTTTGGTCACCTCCTTTTATGCAATTATGAACG
ATCTTTGCGACGTATCTTTTTTCCGGCCTTTCTCGATTCCAATGCAATTGGTACTTTTTGAGCTG
ACGTAACAAACTACGCGAGCCTCCCGATGAAGCCAACAGAAATCCTATCCGAATACTAAAAATCA
AAGGCAGTTTAATTATAGTAGTATACCAGCCACCAGTTCTGGAACTTCCTGTTCCAATCGGAGCA
TATAGATCCGTAAATGGATTTGTATGTATAGCCACTTCAGTCGTG
Found at i:50904 original size:15 final size:15
Alignment explanation
Indices: 50884--50912 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
50874 TTCCTATCCC
50884 TCGACTATCGTCTCT
1 TCGACTATCGTCTCT
50899 TCGACTATCGTCTC
1 TCGACTATCGTCTC
50913 ACTCACGCCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.34, G:0.14, T:0.38
Consensus pattern (15 bp):
TCGACTATCGTCTCT
Left flanking sequence: Indices 50384 -- 50883
GCAACACACACGCCAACAAATCAAATTTGGCCAGCAATAAAACAAACGGATGCGCGTTAGCTCTT
GCTGGGCGTGCTAACGCACTACGGCCTTTCCGCATTACTTGTTTCGGGTCCGGGCGGAGGATTGG
AATAAGGAGTTCCATGTTCATACTGATGCATCACTCTATGCCATTGGATGTATGTTGGTGCATAG
AGGCCTCACGGGTGGGCATGTCAGTGCAGATGCTACTGCGCGGTAATTTATGGACCCCAGTTTCT
GCGCTTCGCTGCCGCACCATGATATTGGACATGGACAGGTGGACAGGCCCAGTCCATTCGCGCGC
GCCCCGTGCAGTAGTCGTCGTCTGACTCGGACACCAGACCGCGTCCACACTATATAGGGCCCTCT
TACAGCATCTACCACAACTACCGCTTCTTGATCAACCACAACTCTTACGACTATCGTCTCACCTA
CGACTATCCTACCGGCTCGGTAGTACCTACACTTCTTCCTATCCC
Right flanking sequence: Indices 50913 -- 51412
ACTCACGCCTGTTAGCTGGTCGTCCGTCTCAACTACGACTAGCGTCTCTTCGGTTATCACCTCAC
CTACCTAGCCCTTCGACTATCGTCTCTTCGACTAACGTCTTACCTACCTTTCGGTACCCGTCGAC
TATCGTCTCCTCTACTTCGTATCCTTCTCCTAACTAAAACCTACCTTTCGGTACCCGTCGACTAT
CGTCTCCTCTACTTCGTATCCTTCTCCTAACGTCTCAACTACTTCCTATGCTTCTTCCTATCCCT
CGACTATCGTCTCGCCTCGCACTATCGTGCTCAACTACAAGTAGCCGCGCGCAGTCGAGCGTGTT
TCATTCCTCGCTTACTTCTCGCCCGATGACCTTAGATGAAAGATGAACCGGTCCCGGTCCCCGGT
CATTATAATTATAGAAGTAGGCTCTCTTAGTTACGCTGCGCCCTGACCCGAGTCCCCACGTCCGC
TTTTATCAGCCCGAAACCCGCGGGGGGCCATCCCCTTATTAACCT
Found at i:51008 original size:15 final size:15
Alignment explanation
Indices: 50988--51017 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
50978 CTACCTAGCC
*
50988 CTTCGACTATCGTCT
1 CTTCGACTAACGTCT
51003 CTTCGACTAACGTCT
1 CTTCGACTAACGTCT
51018 TACCTACCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.33, G:0.13, T:0.37
Consensus pattern (15 bp):
CTTCGACTAACGTCT
Left flanking sequence: Indices 50488 -- 50987
TGTTTCGGGTCCGGGCGGAGGATTGGAATAAGGAGTTCCATGTTCATACTGATGCATCACTCTAT
GCCATTGGATGTATGTTGGTGCATAGAGGCCTCACGGGTGGGCATGTCAGTGCAGATGCTACTGC
GCGGTAATTTATGGACCCCAGTTTCTGCGCTTCGCTGCCGCACCATGATATTGGACATGGACAGG
TGGACAGGCCCAGTCCATTCGCGCGCGCCCCGTGCAGTAGTCGTCGTCTGACTCGGACACCAGAC
CGCGTCCACACTATATAGGGCCCTCTTACAGCATCTACCACAACTACCGCTTCTTGATCAACCAC
AACTCTTACGACTATCGTCTCACCTACGACTATCCTACCGGCTCGGTAGTACCTACACTTCTTCC
TATCCCTCGACTATCGTCTCTTCGACTATCGTCTCACTCACGCCTGTTAGCTGGTCGTCCGTCTC
AACTACGACTAGCGTCTCTTCGGTTATCACCTCACCTACCTAGCC
Right flanking sequence: Indices 51018 -- 51517
TACCTACCTTTCGGTACCCGTCGACTATCGTCTCCTCTACTTCGTATCCTTCTCCTAACTAAAAC
CTACCTTTCGGTACCCGTCGACTATCGTCTCCTCTACTTCGTATCCTTCTCCTAACGTCTCAACT
ACTTCCTATGCTTCTTCCTATCCCTCGACTATCGTCTCGCCTCGCACTATCGTGCTCAACTACAA
GTAGCCGCGCGCAGTCGAGCGTGTTTCATTCCTCGCTTACTTCTCGCCCGATGACCTTAGATGAA
AGATGAACCGGTCCCGGTCCCCGGTCATTATAATTATAGAAGTAGGCTCTCTTAGTTACGCTGCG
CCCTGACCCGAGTCCCCACGTCCGCTTTTATCAGCCCGAAACCCGCGGGGGGCCATCCCCTTATT
AACCTGCTATGCTGACCCCGGCCCGGCTGGCTTTTTGGGAAGCCCGTTCCCACCGCGCTCACGGC
CTGGCTGGCCTGCCTGCGGTAGTGGGAATTCTCCCGTTCCCTGGT
Found at i:51086 original size:62 final size:62
Alignment explanation
Indices: 51019--51138 Score: 240
Period size: 62 Copynumber: 1.9 Consensus size: 62
51009 CTAACGTCTT
51019 ACCTACCTTTCGGTACCCGTCGACTATCGTCTCCTCTACTTCGTATCCTTCTCCTAACTAAA
1 ACCTACCTTTCGGTACCCGTCGACTATCGTCTCCTCTACTTCGTATCCTTCTCCTAACTAAA
51081 ACCTACCTTTCGGTACCCGTCGACTATCGTCTCCTCTACTTCGTATCCTTCTCCTAAC
1 ACCTACCTTTCGGTACCCGTCGACTATCGTCTCCTCTACTTCGTATCCTTCTCCTAAC
51139 GTCTCAACTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.17, C:0.38, G:0.10, T:0.34
Consensus pattern (62 bp):
ACCTACCTTTCGGTACCCGTCGACTATCGTCTCCTCTACTTCGTATCCTTCTCCTAACTAAA
Left flanking sequence: Indices 50519 -- 51018
GGAGTTCCATGTTCATACTGATGCATCACTCTATGCCATTGGATGTATGTTGGTGCATAGAGGCC
TCACGGGTGGGCATGTCAGTGCAGATGCTACTGCGCGGTAATTTATGGACCCCAGTTTCTGCGCT
TCGCTGCCGCACCATGATATTGGACATGGACAGGTGGACAGGCCCAGTCCATTCGCGCGCGCCCC
GTGCAGTAGTCGTCGTCTGACTCGGACACCAGACCGCGTCCACACTATATAGGGCCCTCTTACAG
CATCTACCACAACTACCGCTTCTTGATCAACCACAACTCTTACGACTATCGTCTCACCTACGACT
ATCCTACCGGCTCGGTAGTACCTACACTTCTTCCTATCCCTCGACTATCGTCTCTTCGACTATCG
TCTCACTCACGCCTGTTAGCTGGTCGTCCGTCTCAACTACGACTAGCGTCTCTTCGGTTATCACC
TCACCTACCTAGCCCTTCGACTATCGTCTCTTCGACTAACGTCTT
Right flanking sequence: Indices 51139 -- 51638
GTCTCAACTACTTCCTATGCTTCTTCCTATCCCTCGACTATCGTCTCGCCTCGCACTATCGTGCT
CAACTACAAGTAGCCGCGCGCAGTCGAGCGTGTTTCATTCCTCGCTTACTTCTCGCCCGATGACC
TTAGATGAAAGATGAACCGGTCCCGGTCCCCGGTCATTATAATTATAGAAGTAGGCTCTCTTAGT
TACGCTGCGCCCTGACCCGAGTCCCCACGTCCGCTTTTATCAGCCCGAAACCCGCGGGGGGCCAT
CCCCTTATTAACCTGCTATGCTGACCCCGGCCCGGCTGGCTTTTTGGGAAGCCCGTTCCCACCGC
GCTCACGGCCTGGCTGGCCTGCCTGCGGTAGTGGGAATTCTCCCGTTCCCTGGTCAAAAATCTTG
TTGGATGCGGGATCTACTCCACGAGGAGCGGTACGGACGTAGATGATATCATCACGACCTCTCTT
TGCGTACCTCCCGGGATGCTTAACGCCACTTCGCCAACTGGCATT
Found at i:52931 original size:15 final size:15
Alignment explanation
Indices: 52907--52936 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
52897 AAGGTAGGTA
*
52907 AGACGTTAGTCGAAG
1 AGACGATAGTCGAAG
52922 AGACGATAGTCGAAG
1 AGACGATAGTCGAAG
52937 GATACCGGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.13, G:0.33, T:0.17
Consensus pattern (15 bp):
AGACGATAGTCGAAG
Left flanking sequence: Indices 52407 -- 52906
CCCCTCCTGTCTGGTAATAGCACCGGGCGGCTTGCTCTGACCAACACTCCACTTTTTGCTCCGTC
CATGGAGCGTATGAATTTCCTGGAATGTATACCGACCAAAAATGGGAATGCAGGGATAAGAATAG
GAATTAGAGTACCATTGGAAGAAGGGGCACCTGTGGGAACATCTCTACTGACGAACCATTGAAAT
AGTACGGGCGCTGCCGTGCCACGAGGCACGACCATGAAAGTAATGAAAAAGAAAAAGTTCTGTAG
TTGGACCATCTGCTCGGAATAATAATGGCGATTTGGGATTCTCCAGAGCCCAGTCGATTCCAATG
CTGTTAAGGCTACGAAGTAGACCAGCTAACGGTACTACCTTAGGTAGGTGAGACGGACGACCGGG
GCGAGACGATAGTCGAGGGATAGGAAGAAGCATACCGTTAGGTAGGTTTTAGTTAGGAGAAGGAT
ACGAAGTAGAGGAGACGATAGTCGACGGGTACCGAAAGGTAGGTA
Right flanking sequence: Indices 52937 -- 53436
GATACCGGAAGGTAGGCTCGACTGATAAGGAGAGTGAGGTGATAACCGAAGCCGTGACGGTAGAT
TTTAGTTAGTCTCAGGATACGAAGTAGAGGTATAGGAAGAGTAGTAAAGGTAGAGGAAGACGATA
GTCGCACGAAGACGGACGACCAAAGGCTCGACTGTACGGAGAGGAAGACGGACGACCAAAGGCTC
GACTGATAGGAGAGGAGATAGTCGCACGAGGGACGAGACTCCCGTCGAGGTATAGGAAGCACTGA
GACGTTAGTCGAAGGAATTGACGCTCAAAATCCGTGTTCGCAACGCATACCGAAAAAGGCAATGT
TGCCGACCATTAATGACGGGGTCCCAATTCGGTCAAATCGTCCGCAGCTTCTCCCAGACTCCTCT
TCCTCTCTTCGTTTTCAATAAACTTCTCAAGGAGCCGTAACTTATGGGTCTGCTCAAACTGCAAC
ATAAGTTTGTCTTCCTTTTCAATGAGTTTATCAACGAGGAATAAA
Found at i:53047 original size:20 final size:20
Alignment explanation
Indices: 53024--53061 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
53014 CAGGATACGA
* *
53024 AGTAGAGGTATAGGAAGAGT
1 AGTAAAGGTAGAGGAAGAGT
53044 AGTAAAGGTAGAGGAAGA
1 AGTAAAGGTAGAGGAAGA
53062 CGATAGTCGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.00, G:0.39, T:0.16
Consensus pattern (20 bp):
AGTAAAGGTAGAGGAAGAGT
Left flanking sequence: Indices 52524 -- 53023
GGGATAAGAATAGGAATTAGAGTACCATTGGAAGAAGGGGCACCTGTGGGAACATCTCTACTGAC
GAACCATTGAAATAGTACGGGCGCTGCCGTGCCACGAGGCACGACCATGAAAGTAATGAAAAAGA
AAAAGTTCTGTAGTTGGACCATCTGCTCGGAATAATAATGGCGATTTGGGATTCTCCAGAGCCCA
GTCGATTCCAATGCTGTTAAGGCTACGAAGTAGACCAGCTAACGGTACTACCTTAGGTAGGTGAG
ACGGACGACCGGGGCGAGACGATAGTCGAGGGATAGGAAGAAGCATACCGTTAGGTAGGTTTTAG
TTAGGAGAAGGATACGAAGTAGAGGAGACGATAGTCGACGGGTACCGAAAGGTAGGTAAGACGTT
AGTCGAAGAGACGATAGTCGAAGGATACCGGAAGGTAGGCTCGACTGATAAGGAGAGTGAGGTGA
TAACCGAAGCCGTGACGGTAGATTTTAGTTAGTCTCAGGATACGA
Right flanking sequence: Indices 53062 -- 53561
CGATAGTCGCACGAAGACGGACGACCAAAGGCTCGACTGTACGGAGAGGAAGACGGACGACCAAA
GGCTCGACTGATAGGAGAGGAGATAGTCGCACGAGGGACGAGACTCCCGTCGAGGTATAGGAAGC
ACTGAGACGTTAGTCGAAGGAATTGACGCTCAAAATCCGTGTTCGCAACGCATACCGAAAAAGGC
AATGTTGCCGACCATTAATGACGGGGTCCCAATTCGGTCAAATCGTCCGCAGCTTCTCCCAGACT
CCTCTTCCTCTCTTCGTTTTCAATAAACTTCTCAAGGAGCCGTAACTTATGGGTCTGCTCAAACT
GCAACATAAGTTTGTCTTCCTTTTCAATGAGTTTATCAACGAGGAATAAATGATGATGGTGCTCT
AGGTAGTCCAAAATGTGCTTCGGCCTTGTACCTTTCCAAATGCCCTTCTCATCGTACACGTTATC
CCGTTTTTGGTTGATCGGGGTCCCCAGGGTCATTATCATATTCTT
Found at i:53114 original size:36 final size:36
Alignment explanation
Indices: 53074--53147 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
53064 ATAGTCGCAC
53074 GAAGACGGACGACCAAAGGCTCGACTG-TACGGAGAG
1 GAAGACGGACGACCAAAGGCTCGACTGATA-GGAGAG
53110 GAAGACGGACGACCAAAGGCTCGACTGATAGGAGAG
1 GAAGACGGACGACCAAAGGCTCGACTGATAGGAGAG
53146 GA
1 GA
53148 GATAGTCGCA
Statistics
Matches: 37, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 35 0.95
37 2 0.05
ACGTcount: A:0.35, C:0.20, G:0.36, T:0.08
Consensus pattern (36 bp):
GAAGACGGACGACCAAAGGCTCGACTGATAGGAGAG
Left flanking sequence: Indices 52574 -- 53073
AACATCTCTACTGACGAACCATTGAAATAGTACGGGCGCTGCCGTGCCACGAGGCACGACCATGA
AAGTAATGAAAAAGAAAAAGTTCTGTAGTTGGACCATCTGCTCGGAATAATAATGGCGATTTGGG
ATTCTCCAGAGCCCAGTCGATTCCAATGCTGTTAAGGCTACGAAGTAGACCAGCTAACGGTACTA
CCTTAGGTAGGTGAGACGGACGACCGGGGCGAGACGATAGTCGAGGGATAGGAAGAAGCATACCG
TTAGGTAGGTTTTAGTTAGGAGAAGGATACGAAGTAGAGGAGACGATAGTCGACGGGTACCGAAA
GGTAGGTAAGACGTTAGTCGAAGAGACGATAGTCGAAGGATACCGGAAGGTAGGCTCGACTGATA
AGGAGAGTGAGGTGATAACCGAAGCCGTGACGGTAGATTTTAGTTAGTCTCAGGATACGAAGTAG
AGGTATAGGAAGAGTAGTAAAGGTAGAGGAAGACGATAGTCGCAC
Right flanking sequence: Indices 53148 -- 53647
GATAGTCGCACGAGGGACGAGACTCCCGTCGAGGTATAGGAAGCACTGAGACGTTAGTCGAAGGA
ATTGACGCTCAAAATCCGTGTTCGCAACGCATACCGAAAAAGGCAATGTTGCCGACCATTAATGA
CGGGGTCCCAATTCGGTCAAATCGTCCGCAGCTTCTCCCAGACTCCTCTTCCTCTCTTCGTTTTC
AATAAACTTCTCAAGGAGCCGTAACTTATGGGTCTGCTCAAACTGCAACATAAGTTTGTCTTCCT
TTTCAATGAGTTTATCAACGAGGAATAAATGATGATGGTGCTCTAGGTAGTCCAAAATGTGCTTC
GGCCTTGTACCTTTCCAAATGCCCTTCTCATCGTACACGTTATCCCGTTTTTGGTTGATCGGGGT
CCCCAGGGTCATTATCATATTCTTCTTAGCAATAAGGAGGTTCTTCCAGTCAATTCGAAAGTAGG
CCTCAATCTCAATAGTATCCTTTTTGTTAATACTGTTGTATTGAC
Found at i:56492 original size:33 final size:33
Alignment explanation
Indices: 56452--56517 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
56442 CTTGCATCAA
*
56452 CTACCTAACGGTACCCTTCGGTTATCACCTCAC
1 CTACCTAACAGTACCCTTCGGTTATCACCTCAC
*
56485 CTACCTAACAGTACTCTTCGGTTATCACCTCAC
1 CTACCTAACAGTACCCTTCGGTTATCACCTCAC
56518 TTTCGACTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.23, C:0.38, G:0.11, T:0.29
Consensus pattern (33 bp):
CTACCTAACAGTACCCTTCGGTTATCACCTCAC
Left flanking sequence: Indices 55952 -- 56451
CTGGCTGGAGAGACTGGTGTTCGCTTTTGTCAACTTCTGTCGCGTAGCGCCAACAGAGAGCTGAT
AGAGCGCGGAGCCCCGAAGCGAGCAGAGCCCTTTGTTTCTACTGTCGTACTCCACAGCAGCTCCA
ACTAAAGTTGCCTTTTGTATATTTATTTTCTTTTTCTACCGTGAGGTAGGTAAGACGTTAGGAGA
AGGATACGAAGTAGAGGAGACGATAGTCGACGGGTACCGAAAGGTAGGTAAGACGTTAGTCGACG
GGGGAAATAGCTCAGTTGGTTAGAGTGCTGGTCTGTCACGCCAGAAGTCGCGGGTTCGAACCCCG
TTTTCCCCGCTCCTCCTGCCCTTCCTTAGATTCCGGCTTTTACCTGCTCTGCTGATCCCGGTGCA
GCATTCAATACAAATCAATCAGTCACCAACCTTTCGACTTGTCAACTATTACATCTATGAACAAG
ATATGTACATCTTAGGGTTTACCACAAACCTTTGACTTGCATCAA
Right flanking sequence: Indices 56518 -- 57017
TTTCGACTAACGCTTCACCTTCTACTATCGTCTCACTCTACCTTTACTACTCGACTAACTTCAAC
CTACTTCGTAGCCTACTTCGTAGCCTTACGGTCGAGCCTACCTAGCGGTAGCCTACCCCCCCCCT
CTCTTAACGTCCCATCTACCTACTACCTATTGTCTACAGACCTAACTAGATACCACCATGAGTCT
CTTCAGTCAGCCGGAAAAGTTCTGTTAGGTTCGCCCAACGAATATCAGACGCCGCAGTCGCGTTT
CAGATTCTCTTTTATTGAACAGGTCGTTTACCCCCTCACCTTCTTCCTATACCTCGACTATCGTC
TCGTCCCGGTCCGTTGGTCGTCCTAAAACCTACTTCGTAGCCTTCACAAAGCTCAGTGCCAGCGA
CACACTCATTACTGAGGTGTCACACTCGACTACTGGAAAGGAGCGGTGCTCAACTATCCGGCGTG
GGGCAGAGACGGTTACAGTCTCGAAGTATGTCATATCTAGATAGT
Found at i:56599 original size:12 final size:12
Alignment explanation
Indices: 56582--56608 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
56572 CTAACTTCAA
56582 CCTACTTCGTAG
1 CCTACTTCGTAG
56594 CCTACTTCGTAG
1 CCTACTTCGTAG
56606 CCT
1 CCT
56609 TACGGTCGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.37, G:0.15, T:0.33
Consensus pattern (12 bp):
CCTACTTCGTAG
Left flanking sequence: Indices 56082 -- 56581
ACTAAAGTTGCCTTTTGTATATTTATTTTCTTTTTCTACCGTGAGGTAGGTAAGACGTTAGGAGA
AGGATACGAAGTAGAGGAGACGATAGTCGACGGGTACCGAAAGGTAGGTAAGACGTTAGTCGACG
GGGGAAATAGCTCAGTTGGTTAGAGTGCTGGTCTGTCACGCCAGAAGTCGCGGGTTCGAACCCCG
TTTTCCCCGCTCCTCCTGCCCTTCCTTAGATTCCGGCTTTTACCTGCTCTGCTGATCCCGGTGCA
GCATTCAATACAAATCAATCAGTCACCAACCTTTCGACTTGTCAACTATTACATCTATGAACAAG
ATATGTACATCTTAGGGTTTACCACAAACCTTTGACTTGCATCAACTACCTAACGGTACCCTTCG
GTTATCACCTCACCTACCTAACAGTACTCTTCGGTTATCACCTCACTTTCGACTAACGCTTCACC
TTCTACTATCGTCTCACTCTACCTTTACTACTCGACTAACTTCAA
Right flanking sequence: Indices 56609 -- 57108
TACGGTCGAGCCTACCTAGCGGTAGCCTACCCCCCCCCTCTCTTAACGTCCCATCTACCTACTAC
CTATTGTCTACAGACCTAACTAGATACCACCATGAGTCTCTTCAGTCAGCCGGAAAAGTTCTGTT
AGGTTCGCCCAACGAATATCAGACGCCGCAGTCGCGTTTCAGATTCTCTTTTATTGAACAGGTCG
TTTACCCCCTCACCTTCTTCCTATACCTCGACTATCGTCTCGTCCCGGTCCGTTGGTCGTCCTAA
AACCTACTTCGTAGCCTTCACAAAGCTCAGTGCCAGCGACACACTCATTACTGAGGTGTCACACT
CGACTACTGGAAAGGAGCGGTGCTCAACTATCCGGCGTGGGGCAGAGACGGTTACAGTCTCGAAG
TATGTCATATCTAGATAGTTCCTTACTTGTCAGAACTAAAATGGAAATAACACCCCACGGGTGGT
CTGCAGAATATCAAATTAATGACCTCTACAGATGCCCACTAGAAA
Found at i:57451 original size:18 final size:18
Alignment explanation
Indices: 57398--57453 Score: 58
Period size: 18 Copynumber: 3.1 Consensus size: 18
57388 ACCGTCACGG
57398 CTTCGGTTATCACCTCAC
1 CTTCGGTTATCACCTCAC
* ** * * *
57416 TTTCGACTAACGCTTCAC
1 CTTCGGTTATCACCTCAC
57434 CTTCGGTTATCACCTCAC
1 CTTCGGTTATCACCTCAC
57452 CT
1 CT
57454 ACCTAGCTCG
Statistics
Matches: 26, Mismatches: 12, Indels: 0
0.68 0.32 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.18, C:0.38, G:0.11, T:0.34
Consensus pattern (18 bp):
CTTCGGTTATCACCTCAC
Left flanking sequence: Indices 56898 -- 57397
GTGCCAGCGACACACTCATTACTGAGGTGTCACACTCGACTACTGGAAAGGAGCGGTGCTCAACT
ATCCGGCGTGGGGCAGAGACGGTTACAGTCTCGAAGTATGTCATATCTAGATAGTTCCTTACTTG
TCAGAACTAAAATGGAAATAACACCCCACGGGTGGTCTGCAGAATATCAAATTAATGACCTCTAC
AGATGCCCACTAGAAATCGGCTCATACTGAGCGGACGAGAGAGAATTATGAATTCAATCAAAGCT
TAGCGGCTCACAAGTATGCAGCAGTGTGTTCTTAATACACTGTGAACAAATCCTTTGCAGGATTT
GCGCCTGTCACTCCAATACTTAGATAACATGAGTGGTTAATTAAACTAAGTAGTATACAAAAAGA
CGTCCTAAATTATAGGATAGTCAAATTGTTCAATTTTACGAAGGTGAGACGATATGAGAAGGTCC
GAGCTGCTGCTCCCCCGTCGACTATCGTCTCCTCTACCGTCACGG
Right flanking sequence: Indices 57454 -- 57953
ACCTAGCTCGCACCTCACTTTCGACTAACTAAAACCTCACTTTCGACTAACGTCTCAACTACCTA
GCTCGCACCTCACTTTCTTACCTTCGGTTATCACCTCACTCTCCATATCAGTCGAGCCTACTTCG
TATCCTTGATAGCTGGAAGTTCTCCAAAAGTATGAAAGGCTGGAGGACTTTGTACCATCCATTCC
GGTGTGGTTGGATTCTGTTCAATAGCCCAAGGACTTGGAGCACATCTTTTGTTCTTTCCACTGCT
TGAAGTGATTGTGACGACCACGAAGAAACGACGAATTCCAACTACGGATATATAAGAGCCGAAAC
TGCTCAGAGCATTCCATCCGGCGTAAGCATCTGGATAATCTGGAATGCGACGTGGCATACCCGAA
AGCCCTAAGAAATGCATGGGAAAGAGGGTCAGATTAACCCCGAAAGAAGTGATCCAAAAATGGAT
TTGACCTAAAGTTTCCGGGTATGTCCGACCAAAGATTTTACCCAC
Found at i:59594 original size:16 final size:16
Alignment explanation
Indices: 59543--59595 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
59533 ATCACCTCAC
59543 TCTCCGTCGACTATCG
1 TCTCCGTCGACTATCG
*
59559 TCTCC-TCTACT-TCG
1 TCTCCGTCGACTATCG
*
59573 TATCCGTCGACTATCG
1 TCTCCGTCGACTATCG
59589 TCTCCGT
1 TCTCCGT
59596 GCTTCCTATA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 7 0.23
15 10 0.32
16 14 0.45
ACGTcount: A:0.11, C:0.38, G:0.15, T:0.36
Consensus pattern (16 bp):
TCTCCGTCGACTATCG
Left flanking sequence: Indices 59043 -- 59542
TGAGAAGCATGTGCCCATCACTCCAGCAATGGCACCGAAGATGAAATATAGAGTACCTATATCCT
TGTGGTTAGTGGAGAAGAGCCATCGGACCAGATTTTTCATTAGACCTTTGAATTGACTTTCTTTA
TCAGAGAGGGGCCCGGGGGCTGAAAAAGTACAAAGCGGCGGGGGAAATGAAAAAGGGATACTTAG
GATATATAATCCAAGACCAAAGGGAGCAAGAAGACCTGCGCCTAAAGTCTTATATAACTTCTTTA
ACCCATGTCTAAACTTGGTATATGATTGGATTAAATCTTTTAATTATCCAATCTCTATATCAAGC
CGACATCGGATTCTCTTTGATATTTGATATCCGGGTTATCGCGGAGAAACCGAACTTGATCCACT
AATCGTTGATAATCTTCATTATTACGAAGACTATCAACAATAGGTGATTCAAGCCCTAATCCACC
TTCGGTTATCACCTCAACTACCTAACGGTTCGGTTATCACCTCAC
Right flanking sequence: Indices 59596 -- 60095
GCTTCCTATACCTCGACTATCGTCTCGTCCCTAAAGTCGACTATCGTCTCGTCACTCTAGTAGGT
CTTCAATTGTAATGTTAGAGTCTATAATAACACGTGAGTACCACAAGAGATATTTAAGATACTTT
TTCATTCGTGCTCTAGTAAACATGATTTCGGAGAGATACTCAACATCGTCTTTTGTTTTGAACAT
GGCTAAGCCCTGACTAGGTCTTGGTATAGGTAGCCCACGGCGGGGGGAAGGGGATAATCTCTTTA
GGGATTAATAACGTTCTCAACTTGTCTATTATCTTACCATAACTATACGGGTCTAAGGGGACACC
CCCTCCAAGCCAGAATGACAAGTTAACACAGTTTTTCTTTTGTAAATAAAGATAAATAAATTGAA
ATTCTTTTCTTTCGGACACGGGTTTACACCTTTGTTTGAACCGCGCACCTTGAATACGAGAGAGG
ATATTAAGGTCAGTCACACCTGCTTTCTCATGTAAAGCTAATAGA
Found at i:59612 original size:29 final size:30
Alignment explanation
Indices: 59545--59621 Score: 104
Period size: 29 Copynumber: 2.6 Consensus size: 30
59535 CACCTCACTC
*
59545 TCCGTCGACTATCGTCTCCTCTACTTCGTA
1 TCCGTCGACTATCGTCTCCTCTACTTCCTA
* *
59575 TCCGTCGACTATCGTCTCC-GTGCTTCCTA
1 TCCGTCGACTATCGTCTCCTCTACTTCCTA
59604 TACC-TCGACTATCGTCTC
1 T-CCGTCGACTATCGTCTC
59622 GTCCCTAAAG
Statistics
Matches: 43, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
29 22 0.51
30 21 0.49
ACGTcount: A:0.13, C:0.38, G:0.14, T:0.35
Consensus pattern (30 bp):
TCCGTCGACTATCGTCTCCTCTACTTCCTA
Left flanking sequence: Indices 59045 -- 59544
AGAAGCATGTGCCCATCACTCCAGCAATGGCACCGAAGATGAAATATAGAGTACCTATATCCTTG
TGGTTAGTGGAGAAGAGCCATCGGACCAGATTTTTCATTAGACCTTTGAATTGACTTTCTTTATC
AGAGAGGGGCCCGGGGGCTGAAAAAGTACAAAGCGGCGGGGGAAATGAAAAAGGGATACTTAGGA
TATATAATCCAAGACCAAAGGGAGCAAGAAGACCTGCGCCTAAAGTCTTATATAACTTCTTTAAC
CCATGTCTAAACTTGGTATATGATTGGATTAAATCTTTTAATTATCCAATCTCTATATCAAGCCG
ACATCGGATTCTCTTTGATATTTGATATCCGGGTTATCGCGGAGAAACCGAACTTGATCCACTAA
TCGTTGATAATCTTCATTATTACGAAGACTATCAACAATAGGTGATTCAAGCCCTAATCCACCTT
CGGTTATCACCTCAACTACCTAACGGTTCGGTTATCACCTCACTC
Right flanking sequence: Indices 59622 -- 60121
GTCCCTAAAGTCGACTATCGTCTCGTCACTCTAGTAGGTCTTCAATTGTAATGTTAGAGTCTATA
ATAACACGTGAGTACCACAAGAGATATTTAAGATACTTTTTCATTCGTGCTCTAGTAAACATGAT
TTCGGAGAGATACTCAACATCGTCTTTTGTTTTGAACATGGCTAAGCCCTGACTAGGTCTTGGTA
TAGGTAGCCCACGGCGGGGGGAAGGGGATAATCTCTTTAGGGATTAATAACGTTCTCAACTTGTC
TATTATCTTACCATAACTATACGGGTCTAAGGGGACACCCCCTCCAAGCCAGAATGACAAGTTAA
CACAGTTTTTCTTTTGTAAATAAAGATAAATAAATTGAAATTCTTTTCTTTCGGACACGGGTTTA
CACCTTTGTTTGAACCGCGCACCTTGAATACGAGAGAGGATATTAAGGTCAGTCACACCTGCTTT
CTCATGTAAAGCTAATAGAGAGTAAGGGTGATGAGAACGAATCAG
Found at i:71844 original size:16 final size:16
Alignment explanation
Indices: 71819--71871 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
71809 TATAGGAAGC
71819 ACGGAGACGATAGTCG
1 ACGGAGACGATAGTCG
* *
71835 ACGGATACGA-AGTAG
1 ACGGAGACGATAGTCG
71850 A-GGAGACGATAGTCG
1 ACGGAGACGATAGTCG
71865 ACGGAGA
1 ACGGAGA
71872 GTGAGGTGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 7 0.23
15 10 0.32
16 14 0.45
ACGTcount: A:0.36, C:0.15, G:0.38, T:0.11
Consensus pattern (16 bp):
ACGGAGACGATAGTCG
Left flanking sequence: Indices 71319 -- 71818
TGGTTAGCAAGAATAAGCAAGATTGATCTTAATCCCCACACACTGTCTTTTCGTGTGTGCGTGCT
TGATTGTTTTTTCTTAGCGGGGGCAGGATTCGAACCTGCCGTCAAGAGGTCATGAGCCCGATGAG
TCGACCAATTATAAAACCCCGCTTGGGATCAAGTACCTATTTCACTTCTGATTTCTGATGCGGGC
TTGGTACCATGTCTCCCGAACAATTTCAGTACATATGGCGCAAGACGATTCCACATATCGAGTTC
GGAATGGGATCGGGTGTTTGTTTTCACGTCGAACCCTAGTGCCCGCTTTGTCTTGATTGGAGATT
GATGAACAAGAAGGTTTTAGTTAGTCGAAAGTGAGGTGATAACCGAACCGTTAGGTAGGTGAGAC
GATAGTCGAGTAGTAAAGGTAGAGACGGGAAGACGGACGACCAAAGGCTCGACTGATAGGAGAGG
AGATAGTCGCACGAGGGACGAGACTCCCGTCGAGGTATAGGAAGC
Right flanking sequence: Indices 71872 -- 72371
GTGAGGTGATAACCGAAGAGTACCGTCTAGGTAGGTTGAAGTTAGTCTCAGGATACCGGCTCTCT
TCCACAGGTCCGGCCCGGATAAATCAGACATAGGACATGGGAGTACGTGTAGGTCGCGAAGGATT
CAATCCAGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGCAGACCCCACC
GTGGTATGCGCCAATAAGACGACCAAAAGCCTTTGTGGCCCCCGTGGTACACATAAGTCATGGTT
GCTCCTTGGTCCGATGCTTCGGGTGAAACCTATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGC
CCGGGTACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTCCAACTTCATGTTCCCG
AGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCCTTACAGCCTTGCTT
CCCATTGTCATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAA
Found at i:74322 original size:15 final size:15
Alignment explanation
Indices: 74302--74330 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
74292 AGGCGTGAGT
74302 GAGACGATAGTCGAA
1 GAGACGATAGTCGAA
74317 GAGACGATAGTCGA
1 GAGACGATAGTCGA
74331 GGGATAGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.14, G:0.34, T:0.14
Consensus pattern (15 bp):
GAGACGATAGTCGAA
Left flanking sequence: Indices 73802 -- 74301
GGGCGTTCCTTCTGAGCCAGGATCAAACTCAGATTTTGACCATTGGGCCCTGAGAAGTGGTAGAA
CCAAGCAACGGTAATTAATAGGGGCCGTTGCGGAGGCTAGGTACAAGGGCCCCTCTCCCATCCGG
TCGAGTCCATAAATGGCGTGGGTCGAGCGCACTCCGTGACCTTTTTCATCCTGGTGAACCGAAAA
AAATACAAAACCAAGCATAGAATAGAGAGAGGGAAGCATGAGAAAGACCACCATAATATTCTTAA
GCATATAGAAACACAGGGAAAAGAAAAGTCTGTCTGTACAAACGATGATGGCCTGTATTCGGAGC
AGACCGGCTCACTCACTCCACTCGTGCCTACAGAAACGGGCGAGGGGGAATTAGGAGCGGGGACG
AGAACTCACTCTTTCTGCACATCAGTAGCACTGGAACTTCAGGTGCAAGGTGACCGAGGCTAGGA
GGGAATATGCGTTGGTTTTAGGACGACCAGCTAACAGGCGTGAGT
Right flanking sequence: Indices 74331 -- 74830
GGGATAGGAAGACGGGGAGATTGTTGGGAGACAATTTTATCCTGGCTTCAGAGTTCCTTAAGGGC
TTTAACATCAAGAGTGGGACTAGGAAGGCTTGCTTGAAGGTGGATATAGCTAAGGCATTTGATAG
TGTAGACTGGTATGGATTGGACCTCACCATGGTGGCTATGGGCTTTGATCAGACCTTTATCAACT
GGGTGATGGAGTGTGTAACTACTGCATCTTATTCTGTTTTAGTTAATGGTTCACCCTCAAGGGTG
TTTCATGGCTCTAGAGGGTTGAGGCAAGCCTCTCTCTCCCTTTCTCTTCACTTTAGTAATGGAGC
ACTTGACACAAAGTCTGAATGAGAAGACAGAGATGGGGGAATTACAGTTGTTCAACCTGAAAGGA
GTGCCTGTGTTATCTCATCTGATGTATGCAGATGATGTGGTGATTTTTTCTAAGGCCACAGAAAG
AAGTATGGCTGCAGTCAAGGATGCACTTGGAGAGTTATACTCCCA
Found at i:76275 original size:12 final size:12
Alignment explanation
Indices: 76258--76284 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
76248 CTCGACTGTA
76258 AGGCTACGAAGT
1 AGGCTACGAAGT
76270 AGGCTACGAAGT
1 AGGCTACGAAGT
76282 AGG
1 AGG
76285 TTGAAGTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.15, G:0.37, T:0.15
Consensus pattern (12 bp):
AGGCTACGAAGT
Left flanking sequence: Indices 75758 -- 76257
TTCTTCTACCTTTTCTAGGGAGTCGATGACTATTCATAGCTATTACCTTGACACCAAAGAAGAGT
TCGACCCAATGCTTTATTTCTGTCCTAGTTGATCCTGATTCGACATTAGAAGTATATTGATTGTT
CTCCAATAACCGAATACTTTTTTCTGTAAATACTGCATATTTGATTCCATCCATAAATCCATTTT
CTTCCCTCGGTTATCACCTCAAGTACCTAACGGTACCCTATGAGTTCCAGTATCGATAATAATTA
TAGTTCTTATTGTTCGTATGTTATGTATGAATATACCATACCAATTCGTTATGTATGGATGATGA
GATTCTATATATACAATATACAGAGCCAATTCCAATGGACTTATTGAACGTTCCCATTGGCGTGC
ATCCAGCAGGAATTGAACCTACGAATTTGCCAATGCCAACACCAGCGGGGTCAAAGTCAAAGGAA
TCGCTTTGAATCTTGAAAATGAGAATAATGACAGGCTCGACTGTA
Right flanking sequence: Indices 76285 -- 76784
TTGAAGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGATAGTAGAAGGTGAAGCGTTAGTCGAAAG
TGAGGTGATAACCGTAGTTGAGACGGACGACCAACGGACCGGGACGAGACGATAGTCGAGGTATA
GGAAGCACGAGGGACGAGACGATAGTCGAGGTATAGGAAGCACGAGGCTCGACTGTAAGGCTACG
AAGTAGGCTACGAAGTAGGTTGAAGTTAGTCGAGTAGTAAAGGTAGAGTGAGGTGATAACCGAAG
CGTACCGTCCAATCCGGAAGACGGAGAGTGAGGTGATAACCGAAGGGCGAGACTCCCGTCGAGGT
ATAGGAAGCACGGAGACGATAGTCGACGGATACGAAGTAGAGGAGACGATAGTCGACGGAGAGTG
AGGTGATAACCGAAGAGTACCGTCTAGGTAGTTGAGACGGACGACCAACTGGGAGGCTCGACTGT
AAGGCTACGAAGTAGGCTACGAAGTAGGTTGAAGTTAGTCGAGTA
Found at i:76436 original size:35 final size:35
Alignment explanation
Indices: 76390--76461 Score: 144
Period size: 35 Copynumber: 2.1 Consensus size: 35
76380 CCAACGGACC
76390 GGGACGAGACGATAGTCGAGGTATAGGAAGCACGA
1 GGGACGAGACGATAGTCGAGGTATAGGAAGCACGA
76425 GGGACGAGACGATAGTCGAGGTATAGGAAGCACGA
1 GGGACGAGACGATAGTCGAGGTATAGGAAGCACGA
76460 GG
1 GG
76462 CTCGACTGTA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 37 1.00
ACGTcount: A:0.33, C:0.14, G:0.42, T:0.11
Consensus pattern (35 bp):
GGGACGAGACGATAGTCGAGGTATAGGAAGCACGA
Left flanking sequence: Indices 75890 -- 76389
CCAATAACCGAATACTTTTTTCTGTAAATACTGCATATTTGATTCCATCCATAAATCCATTTTCT
TCCCTCGGTTATCACCTCAAGTACCTAACGGTACCCTATGAGTTCCAGTATCGATAATAATTATA
GTTCTTATTGTTCGTATGTTATGTATGAATATACCATACCAATTCGTTATGTATGGATGATGAGA
TTCTATATATACAATATACAGAGCCAATTCCAATGGACTTATTGAACGTTCCCATTGGCGTGCAT
CCAGCAGGAATTGAACCTACGAATTTGCCAATGCCAACACCAGCGGGGTCAAAGTCAAAGGAATC
GCTTTGAATCTTGAAAATGAGAATAATGACAGGCTCGACTGTAAGGCTACGAAGTAGGCTACGAA
GTAGGTTGAAGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGATAGTAGAAGGTGAAGCGTTAGTC
GAAAGTGAGGTGATAACCGTAGTTGAGACGGACGACCAACGGACC
Right flanking sequence: Indices 76462 -- 76961
CTCGACTGTAAGGCTACGAAGTAGGCTACGAAGTAGGTTGAAGTTAGTCGAGTAGTAAAGGTAGA
GTGAGGTGATAACCGAAGCGTACCGTCCAATCCGGAAGACGGAGAGTGAGGTGATAACCGAAGGG
CGAGACTCCCGTCGAGGTATAGGAAGCACGGAGACGATAGTCGACGGATACGAAGTAGAGGAGAC
GATAGTCGACGGAGAGTGAGGTGATAACCGAAGAGTACCGTCTAGGTAGTTGAGACGGACGACCA
ACTGGGAGGCTCGACTGTAAGGCTACGAAGTAGGCTACGAAGTAGGTTGAAGTTAGTCGAGTAGT
AAAGGTAGAGTGAGGTGATAACCGAACCGTTAGGTAGTTGAGACGCGAAGGAGAAAGGTAGATGA
GACGCGAAGGATACGAAGTAGAGGTATTAGGAAGAAGGATAGGAAGTAGGTGCACAAGAGTAATA
GTACTTCTTCCATCTCTTTTTTATGGGTTCTACGGACCGATGCCT
Found at i:76489 original size:12 final size:12
Alignment explanation
Indices: 76472--76498 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
76462 CTCGACTGTA
76472 AGGCTACGAAGT
1 AGGCTACGAAGT
76484 AGGCTACGAAGT
1 AGGCTACGAAGT
76496 AGG
1 AGG
76499 TTGAAGTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.15, G:0.37, T:0.15
Consensus pattern (12 bp):
AGGCTACGAAGT
Left flanking sequence: Indices 75972 -- 76471
CAAGTACCTAACGGTACCCTATGAGTTCCAGTATCGATAATAATTATAGTTCTTATTGTTCGTAT
GTTATGTATGAATATACCATACCAATTCGTTATGTATGGATGATGAGATTCTATATATACAATAT
ACAGAGCCAATTCCAATGGACTTATTGAACGTTCCCATTGGCGTGCATCCAGCAGGAATTGAACC
TACGAATTTGCCAATGCCAACACCAGCGGGGTCAAAGTCAAAGGAATCGCTTTGAATCTTGAAAA
TGAGAATAATGACAGGCTCGACTGTAAGGCTACGAAGTAGGCTACGAAGTAGGTTGAAGTTAGTC
GAGTAGTAAAGGTAGAGTGAGACGATAGTAGAAGGTGAAGCGTTAGTCGAAAGTGAGGTGATAAC
CGTAGTTGAGACGGACGACCAACGGACCGGGACGAGACGATAGTCGAGGTATAGGAAGCACGAGG
GACGAGACGATAGTCGAGGTATAGGAAGCACGAGGCTCGACTGTA
Right flanking sequence: Indices 76499 -- 76998
TTGAAGTTAGTCGAGTAGTAAAGGTAGAGTGAGGTGATAACCGAAGCGTACCGTCCAATCCGGAA
GACGGAGAGTGAGGTGATAACCGAAGGGCGAGACTCCCGTCGAGGTATAGGAAGCACGGAGACGA
TAGTCGACGGATACGAAGTAGAGGAGACGATAGTCGACGGAGAGTGAGGTGATAACCGAAGAGTA
CCGTCTAGGTAGTTGAGACGGACGACCAACTGGGAGGCTCGACTGTAAGGCTACGAAGTAGGCTA
CGAAGTAGGTTGAAGTTAGTCGAGTAGTAAAGGTAGAGTGAGGTGATAACCGAACCGTTAGGTAG
TTGAGACGCGAAGGAGAAAGGTAGATGAGACGCGAAGGATACGAAGTAGAGGTATTAGGAAGAAG
GATAGGAAGTAGGTGCACAAGAGTAATAGTACTTCTTCCATCTCTTTTTTATGGGTTCTACGGAC
CGATGCCTGCTGCTTCATCTGGGGGAAAAGAATCATAGATATGCC
Found at i:76644 original size:16 final size:16
Alignment explanation
Indices: 76619--76671 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
76609 TATAGGAAGC
76619 ACGGAGACGATAGTCG
1 ACGGAGACGATAGTCG
* *
76635 ACGGATACGA-AGTAG
1 ACGGAGACGATAGTCG
76650 A-GGAGACGATAGTCG
1 ACGGAGACGATAGTCG
76665 ACGGAGA
1 ACGGAGA
76672 GTGAGGTGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 7 0.23
15 10 0.32
16 14 0.45
ACGTcount: A:0.36, C:0.15, G:0.38, T:0.11
Consensus pattern (16 bp):
ACGGAGACGATAGTCG
Left flanking sequence: Indices 76119 -- 76618
GGACTTATTGAACGTTCCCATTGGCGTGCATCCAGCAGGAATTGAACCTACGAATTTGCCAATGC
CAACACCAGCGGGGTCAAAGTCAAAGGAATCGCTTTGAATCTTGAAAATGAGAATAATGACAGGC
TCGACTGTAAGGCTACGAAGTAGGCTACGAAGTAGGTTGAAGTTAGTCGAGTAGTAAAGGTAGAG
TGAGACGATAGTAGAAGGTGAAGCGTTAGTCGAAAGTGAGGTGATAACCGTAGTTGAGACGGACG
ACCAACGGACCGGGACGAGACGATAGTCGAGGTATAGGAAGCACGAGGGACGAGACGATAGTCGA
GGTATAGGAAGCACGAGGCTCGACTGTAAGGCTACGAAGTAGGCTACGAAGTAGGTTGAAGTTAG
TCGAGTAGTAAAGGTAGAGTGAGGTGATAACCGAAGCGTACCGTCCAATCCGGAAGACGGAGAGT
GAGGTGATAACCGAAGGGCGAGACTCCCGTCGAGGTATAGGAAGC
Right flanking sequence: Indices 76672 -- 77171
GTGAGGTGATAACCGAAGAGTACCGTCTAGGTAGTTGAGACGGACGACCAACTGGGAGGCTCGAC
TGTAAGGCTACGAAGTAGGCTACGAAGTAGGTTGAAGTTAGTCGAGTAGTAAAGGTAGAGTGAGG
TGATAACCGAACCGTTAGGTAGTTGAGACGCGAAGGAGAAAGGTAGATGAGACGCGAAGGATACG
AAGTAGAGGTATTAGGAAGAAGGATAGGAAGTAGGTGCACAAGAGTAATAGTACTTCTTCCATCT
CTTTTTTATGGGTTCTACGGACCGATGCCTGCTGCTTCATCTGGGGGAAAAGAATCATAGATATG
CCGGTAATTAGAAGGAAGAACCACCATAAAAATCTTCCTCGTGTATCATCTGTAGCAGAACTATG
AACGGGAGCTAGCAATCCGGACCGTATTGAAAAGGTTCCTAAGACACAGCATGGAAGAGTCACAA
TATTAAGAAGCGAGGTCCAAGAATGAAGAAGGGGTAGAATTACTG
Found at i:76758 original size:12 final size:12
Alignment explanation
Indices: 76741--76767 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
76731 CTCGACTGTA
76741 AGGCTACGAAGT
1 AGGCTACGAAGT
76753 AGGCTACGAAGT
1 AGGCTACGAAGT
76765 AGG
1 AGG
76768 TTGAAGTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.15, G:0.37, T:0.15
Consensus pattern (12 bp):
AGGCTACGAAGT
Left flanking sequence: Indices 76241 -- 76740
TGACAGGCTCGACTGTAAGGCTACGAAGTAGGCTACGAAGTAGGTTGAAGTTAGTCGAGTAGTAA
AGGTAGAGTGAGACGATAGTAGAAGGTGAAGCGTTAGTCGAAAGTGAGGTGATAACCGTAGTTGA
GACGGACGACCAACGGACCGGGACGAGACGATAGTCGAGGTATAGGAAGCACGAGGGACGAGACG
ATAGTCGAGGTATAGGAAGCACGAGGCTCGACTGTAAGGCTACGAAGTAGGCTACGAAGTAGGTT
GAAGTTAGTCGAGTAGTAAAGGTAGAGTGAGGTGATAACCGAAGCGTACCGTCCAATCCGGAAGA
CGGAGAGTGAGGTGATAACCGAAGGGCGAGACTCCCGTCGAGGTATAGGAAGCACGGAGACGATA
GTCGACGGATACGAAGTAGAGGAGACGATAGTCGACGGAGAGTGAGGTGATAACCGAAGAGTACC
GTCTAGGTAGTTGAGACGGACGACCAACTGGGAGGCTCGACTGTA
Right flanking sequence: Indices 76768 -- 77267
TTGAAGTTAGTCGAGTAGTAAAGGTAGAGTGAGGTGATAACCGAACCGTTAGGTAGTTGAGACGC
GAAGGAGAAAGGTAGATGAGACGCGAAGGATACGAAGTAGAGGTATTAGGAAGAAGGATAGGAAG
TAGGTGCACAAGAGTAATAGTACTTCTTCCATCTCTTTTTTATGGGTTCTACGGACCGATGCCTG
CTGCTTCATCTGGGGGAAAAGAATCATAGATATGCCGGTAATTAGAAGGAAGAACCACCATAAAA
ATCTTCCTCGTGTATCATCTGTAGCAGAACTATGAACGGGAGCTAGCAATCCGGACCGTATTGAA
AAGGTTCCTAAGACACAGCATGGAAGAGTCACAATATTAAGAAGCGAGGTCCAAGAATGAAGAAG
GGGTAGAATTACTGAATGAATACAAGCTGTGGCGGAGACCCGAGGCATAAAAGAAGCATTTTCTA
CGGGATCCCGAAACCACCAGCCACCCCGACCTAATTCATGATGAG
Found at i:77750 original size:15 final size:15
Alignment explanation
Indices: 77730--77760 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
77720 GACGGTAGTT
77730 GAGACGATAGTCGAA
1 GAGACGATAGTCGAA
77745 GAGACGATAGTCGAA
1 GAGACGATAGTCGAA
77760 G
1 G
77761 GCTCGACTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.39, C:0.13, G:0.35, T:0.13
Consensus pattern (15 bp):
GAGACGATAGTCGAA
Left flanking sequence: Indices 77230 -- 77729
CCGAAACCACCAGCCACCCCGACCTAATTCATGATGAGCCCACCAACTTCCTGGCGAGATGCCTA
CGGTTAAAAACAACCGACATGTCAAGATCCAAATTCGAATTGGTTCCTGGTCCTGGTCAGAGACC
ACTGTGTTCGCGCCGGCGGTCCAACAAAGAGGCGAAGTGGACGCTTTATCCGTACCATTGCTTGT
GCTTGGGAGAACGACACGCTTCGCCTGCTCCCTCCACTTGTCCCTCTGTGCTCCTGTCCAGCCAG
TCTCTAAAGAAGAGAAGGATACCGTCAGGTAGGCTACCGAAAGGTAGGCGGACCTAGGTAGGTGA
GGTGATAACCGAAGGTGAGACGTTAGTCGAAAGTGAGACGGACGACCAACTGGGAGGGGCGAGAC
GATAGTCGAGGTATTAGGAAGAAAAGACGATAGTCGTAGTTGAGACGTTAGTCGAAGGCTCGACT
GATATGGAGAGTGAGGGATAACCGAAGCATACCGGGACGGTAGTT
Right flanking sequence: Indices 77761 -- 78260
GCTCGACTGATAAGGAGAGTGAGGTGATAACCGAAGGTGAGACGATAGGAGAAGGCTCGACTGAT
ATGGAGAGTGAGGTGATAACCGAAGCATACCGGGACGGTAGGTGAGACGATAGTCGAAGGCGAAA
AAGCGCCGCCGAAGCAGCATGAGCAGGCTTCGGTGGAAAGGCAACCACCGAGCAGGTGCACATTT
TTCGCCCACTTCTATAATGACCGGGTGGGTAAAGAGCGAGCTTCTACCACAACTCCTACTTCGTA
TCCTCTGGGATCCGACGCATCCAGCAGAGCGAAGCTGCCTTCCATTCTTTTCGGTGGCATCCTTA
TATAAAACAGGCGAGTGAAGTGCCACAATCCCATTCAGAATTTTTGATCTACATAAGCCAAAGCC
CATAGCACTGGCTACCTCTCCGGCATAAATGCAAGGAGGATGTATGGATAATATGGGATCTTGTA
GAACAGGATTTGATTCTGCAAGCGGTTCGGTACGAACGAAGAAAT
Found at i:77804 original size:54 final size:54
Alignment explanation
Indices: 77745--77850 Score: 185
Period size: 54 Copynumber: 2.0 Consensus size: 54
77735 GATAGTCGAA
**
77745 GAGACGATAGTCGAAGGCTCGACTGATAAGGAGAGTGAGGTGATAACCGAAGGT
1 GAGACGATAGGAGAAGGCTCGACTGATAAGGAGAGTGAGGTGATAACCGAAGGT
*
77799 GAGACGATAGGAGAAGGCTCGACTGATATGGAGAGTGAGGTGATAACCGAAG
1 GAGACGATAGGAGAAGGCTCGACTGATAAGGAGAGTGAGGTGATAACCGAAG
77851 CATACCGGGA
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.34, C:0.12, G:0.38, T:0.16
Consensus pattern (54 bp):
GAGACGATAGGAGAAGGCTCGACTGATAAGGAGAGTGAGGTGATAACCGAAGGT
Left flanking sequence: Indices 77245 -- 77744
ACCCCGACCTAATTCATGATGAGCCCACCAACTTCCTGGCGAGATGCCTACGGTTAAAAACAACC
GACATGTCAAGATCCAAATTCGAATTGGTTCCTGGTCCTGGTCAGAGACCACTGTGTTCGCGCCG
GCGGTCCAACAAAGAGGCGAAGTGGACGCTTTATCCGTACCATTGCTTGTGCTTGGGAGAACGAC
ACGCTTCGCCTGCTCCCTCCACTTGTCCCTCTGTGCTCCTGTCCAGCCAGTCTCTAAAGAAGAGA
AGGATACCGTCAGGTAGGCTACCGAAAGGTAGGCGGACCTAGGTAGGTGAGGTGATAACCGAAGG
TGAGACGTTAGTCGAAAGTGAGACGGACGACCAACTGGGAGGGGCGAGACGATAGTCGAGGTATT
AGGAAGAAAAGACGATAGTCGTAGTTGAGACGTTAGTCGAAGGCTCGACTGATATGGAGAGTGAG
GGATAACCGAAGCATACCGGGACGGTAGTTGAGACGATAGTCGAA
Right flanking sequence: Indices 77851 -- 78350
CATACCGGGACGGTAGGTGAGACGATAGTCGAAGGCGAAAAAGCGCCGCCGAAGCAGCATGAGCA
GGCTTCGGTGGAAAGGCAACCACCGAGCAGGTGCACATTTTTCGCCCACTTCTATAATGACCGGG
TGGGTAAAGAGCGAGCTTCTACCACAACTCCTACTTCGTATCCTCTGGGATCCGACGCATCCAGC
AGAGCGAAGCTGCCTTCCATTCTTTTCGGTGGCATCCTTATATAAAACAGGCGAGTGAAGTGCCA
CAATCCCATTCAGAATTTTTGATCTACATAAGCCAAAGCCCATAGCACTGGCTACCTCTCCGGCA
TAAATGCAAGGAGGATGTATGGATAATATGGGATCTTGTAGAACAGGATTTGATTCTGCAAGCGG
TTCGGTACGAACGAAGAAATTTCGAACAAAAGGATCGGAACTCGCTGATAGGAAAAGAGAGAAAA
ACAAAGCAATGCCAAGAGCTCCGTCAATCCGCTGCTCATTGATCG
Found at i:78991 original size:18 final size:19
Alignment explanation
Indices: 78957--78992 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
78947 GGAAGAAGAA
*
78957 TGCACCAAAATGCAGGTGC
1 TGCACCAAAACGCAGGTGC
78976 TGCACC-AAACGCAGGTG
1 TGCACCAAAACGCAGGTG
78993 GTTCTTTCTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.31, C:0.28, G:0.28, T:0.14
Consensus pattern (19 bp):
TGCACCAAAACGCAGGTGC
Left flanking sequence: Indices 78457 -- 78956
GATTTGAGCGCCCAAAGGAGCAAAGCTCATTTTCCTTCTTAGACTCTGATCAAGCGGCGCATAAA
AAAGGATACCGTTAGGTAGTTGAGGCGATAGCCGAAGGGCTGGCCCATCAAAAGTCTGGTTCCTT
CGTGAACCCGGAATTAGTGGATCGGAATCTACAAGAGTTCTACGAACGAAGGGAGTGTACAACTG
GTTTTTTCCACTTTTTTGTTGGAGATACCGAATGGAGTTCTTCAAGAAGTTCGAGACAAAGGAAC
AATCAATTCTTTCTCTATGGCCTCTTCGTTTTGAGACATTATGGCTTTGGGGTCGACCCCGATAA
CAAAGAAGGAATCCATAAAAACTTGGGATCCGACACCATGATAAAATACTACCCTCATGATTAGA
CCATGTCCCTGAGATTTGATAAAAGAAAGGTGCCTCCGCGGTGGAGACGTTGGGAGGGGATAAGT
TCTCCGTAATATGACGGAACGAAAGACCAAGGAAAGGAAGAAGAA
Right flanking sequence: Indices 78993 -- 79492
GTTCTTTCTTGTTGTAAGTGAATGCAACGAAAAGACCCGGAAATAACGAATAATGAGACAATTCC
AAAAATGTCATTTCGCACTTCGTGACCTTCCCATCATCCGGTAACCACAGGATGATCCACAAGAA
AGGTGGCAGGATTCGAACCGGCCCGGGTGGCCGTTTCCGCACCCCTCGTCGCCTCTGTACCCGAA
ACAGATGCGCTGCGCTACGAAGCACGCGAAGTTAGGTAGTTGAGGCGATAGCCGTAGGATGATTG
AACAACGAAATACGCCCTACAGAATATTTCGAAGTGCTGATCCACATCACTCATCTGGATGGTGT
GGACGGTGCGACGGGATGGCTACACTTACCGTGTCAATTCCTAGTTGGCAAGTTGGTAGATCCTG
AAAAGGGTATTATCTTCTCAACCAGCTAACGGGGCGAGACGATAGTCGAGGTATAGGAAGTAGGA
GTTGAGACGTAGTCGAATAGTGAAGGTAGAGACGGTGAGGGTGAG
Found at i:79671 original size:18 final size:18
Alignment explanation
Indices: 79648--79682 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
79638 ATCAAGTAGG
79648 ACTGTGTCCATTAGATTC
1 ACTGTGTCCATTAGATTC
79666 ACTGTGTCCATTAGATT
1 ACTGTGTCCATTAGATT
79683 GCTAACAATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.23, C:0.20, G:0.17, T:0.40
Consensus pattern (18 bp):
ACTGTGTCCATTAGATTC
Left flanking sequence: Indices 79148 -- 79647
GGTGGCCGTTTCCGCACCCCTCGTCGCCTCTGTACCCGAAACAGATGCGCTGCGCTACGAAGCAC
GCGAAGTTAGGTAGTTGAGGCGATAGCCGTAGGATGATTGAACAACGAAATACGCCCTACAGAAT
ATTTCGAAGTGCTGATCCACATCACTCATCTGGATGGTGTGGACGGTGCGACGGGATGGCTACAC
TTACCGTGTCAATTCCTAGTTGGCAAGTTGGTAGATCCTGAAAAGGGTATTATCTTCTCAACCAG
CTAACGGGGCGAGACGATAGTCGAGGTATAGGAAGTAGGAGTTGAGACGTAGTCGAATAGTGAAG
GTAGAGACGGTGAGGGTGAGACGATAGTCGAATGGGATGAATGTCCAATCCCAAAGTCAGTATAT
GATGAATCGAGTGGGGTAACAATAATAACAATAAATATTATTTACCCTACCGGTGTGTAAGGGTT
GTGCGGGTGTGCCATTCGTGACAGGGCAGGCTCCCATCAAGTAGG
Right flanking sequence: Indices 79683 -- 80182
GCTAACAATGATTTCCACCATAGCTGCTGTCTCTATTTGTACTTTGACTTCCACGAATCTCACTG
CACTGACCATAGTAAACTCCTTATACAAGACCTAGGTGGCCTGCCGTCTGAAATGCACAAACCTT
CGCTTTACTGAAGCTAGTCTATGCAGATTATGCCTTTTCATACGTGAAATTCCCTTCTGTCGGTA
AGCATCTACTATCTCCTCAAATGAAGATTTCTCTAAGCTGGTACTTTTGCTTATACGCCCTTCCT
CAGCTCCTTCCAGGATCCAACGAATAGCTAAGCTTTGTTGACGATCCCTGCCAACAAAAGAGGGG
ACATCATAAGTCGTACCTGCTATTTTGACTTTTTCGACTTCGCATATTGGCTTGAGATTTTCTAC
AGCCTTCACCAGAAGTTCGATTACATCGCCTGAACTTCGAGCTGAGCGATGAAAAGTTTGATCAA
AAATGGCACGAACTCTCCTTCTTTTACCGGAGATCATGCGAAAGT
Found at i:80813 original size:15 final size:15
Alignment explanation
Indices: 80793--80821 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
80783 TTCCTATCCC
80793 TCGACTATCGTCTCT
1 TCGACTATCGTCTCT
80808 TCGACTATCGTCTC
1 TCGACTATCGTCTC
80822 ACCTACTTCG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.34, G:0.14, T:0.38
Consensus pattern (15 bp):
TCGACTATCGTCTCT
Left flanking sequence: Indices 80293 -- 80792
AAGAGCCATCACGAATTTGCTTTTTGATTTCCAGCTCTGTTAATTCAAACTCATTTGGATATCTC
TTATAGACACAATCAAGTTGAATAAGAAGTTGTTCCATTCGCGTCTCACCAACTTCGTTCCCTTT
ACGCGAGATACAAGACCTAGGGCGGCTTCACTTCGCCTCTGGTTGGAAGAGCTCGGGTCGCGAGA
TAATGGGTTTACTATTTACTAACAGAACAGATACGGCGTGTGGTTCGCTCGATAAGAGCTCGGAC
AACACGGAGAGAGAGCCAGAGACCCTACGCATTCCCTATGCGTTAGATGGTCGGACCTATGACGC
TGAGAGCATGGCCACCCTTCCCGTCGGGCGATCGGACGGGGCACGTACTCGTCTCTTTATAAGAC
CAATACTTCCTTCCGCCCTGTAACTACAGTACCCCTCTACCACAACTATTCGACTATCGTCTCAA
CTACGACTAACGTCTCCCCGTCGCGTCTCCACTACTTCCTATCCC
Right flanking sequence: Indices 80822 -- 81321
ACCTACTTCGTAGCCATTATAGTAATTGCAGCTTCCCAGCATAGGATAGACCCTTTGTTTTCCAC
CTAGAGGTCATCATTTTCAGACTATTGACTAGTGTAGTGCAGTCAGTAGTTGAGGTTGTATCCCA
CCTAGCCGAGCCATTGAGGTTGAGACTAGCGTCGAAGGGAGTGATGGGCAAACTGAAGCCCAAGT
GCTACTCCCCCGTCGACTATCGTCTCCTCTACTTCGTATCCTACTGTAAAAGTTAGCAATATGAC
CATTTACACTAAATCAAATTCATCATATGGGCAAACCATTGGTAATAATCCGGTCAAGGGTTGAC
AGAGATTTCAGGTATCCTCCCCTTCCCGGTAAAATTACTTCCTATTAAACACCTTGGTCTACCTC
TTGCAGGTCGCAAACTAAGGCACTCGGACTGCACGGACTTGATTGGAATGTTGGACTCTTACTTG
GCAAAATGGCGCACAAAGGCATTATCCTACTACGGCAGGCTGCAG
Found at i:83371 original size:30 final size:30
Alignment explanation
Indices: 83335--83625 Score: 480
Period size: 30 Copynumber: 9.8 Consensus size: 30
83325 GTAGGTTTTA
83335 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
1 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
83365 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
1 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
83395 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
1 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
*** *
83425 GTTAGTCGAAGGATACGAAGTAGGTKWKAN
1 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
***
83455 GTTAGTCGAAGGATACGAAGTAGGTTTTA-
1 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
83484 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
1 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
83514 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
1 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
**
83544 GTTAGTCGAAGGATACGAAGTAGGT-TTA-
1 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
83572 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
1 GTTAGTCGAAGGATACGAAGTAGGTGAGAC
83602 GTTAGTCGAAGGATACGAAGTAGG
1 GTTAGTCGAAGGATACGAAGTAGG
83626 CTCGACTGAT
Statistics
Matches: 244, Mismatches: 14, Indels: 6
0.92 0.05 0.02
Matches are distributed among these distances:
28 25 0.10
29 28 0.11
30 191 0.78
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.22
Consensus pattern (30 bp):
GTTAGTCGAAGGATACGAAGTAGGTGAGAC
Left flanking sequence: Indices 82835 -- 83334
AGTTACAACCTAAGATCTATGACCATATTATGTTAACTCTTCGTATTTCGTTCATCCCATCGGTA
TGCTCCCAGGTACCTGTCATTGTGATCTGTTTGCCAAAACCCAGGGGTCTTTCTGTGGAAACCCT
CACGAACAATCGTCGTTTTTTGATGGTTTTTCCGCTTCTCACAGCAGCTCTTTCCGCACCTCCGG
ATATCTGGTGCCAAATCGTCGCCTCTTTCCTTCTTTCTTCGATAATAGAGTTGGCGTTATATGTG
GCATCGATTGTACAAGTTCGCGAAGAGGGCACGTTTTCTATAGAGTAATTAGACATGTTGAAGTT
CGATATCGAAAGTAATTAAAACGGACGTCTGGCTTCCACCCCGTGTTTTTCAAAGCAATAGATAC
ATGGCCAAGAATGAAATTAATTGTTTCATCTCCCCATAGGCAAAAGTTAATTCACCGTTTTATAG
AGGCTACGAAGTAGGCTCGACTGTAAGGCTACGAAGTAGGTTTTA
Right flanking sequence: Indices 83626 -- 84125
CTCGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGTTAGTCGAGT
AGTAAAGGTAGAGTGAGGTGATAACCGAAGGCTCGACTGTACGGAGAGGAAGACGGACGACCAAA
GGCTCGACTGTACGGAGAGGAAGACGGACGACCAAAGGCTCGACTGATAGGAGAGGAGATAGTCG
CACGAGGGACTAGACGGTACTCTTCGGAGAGTTTAACCGGGACGAGACGATAGTCGACTTTAGGG
ACGAGACGATAGTCTCAGGAGAGTTTAGGACGACCGGGACGAGACGATAGTCGAGGTATAGGAAG
CACAGAGGAGACGGAGATAAAACAAACACGGTTTGTATAGGCAAAACCTATCAAAGCATGCACTT
TTATCAGTTTTCTGCTTTGAATCTTTCGATTCATTTGGCTCTCACGCTCACTTAATTAATGACAT
TTATGGGAATTCCCATATTTTTAATGGAATGAACCTGCCCTTTCT
Found at i:83674 original size:30 final size:30
Alignment explanation
Indices: 83640--83707 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
83630 ACTGATATGG
83640 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
1 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
83670 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
1 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
83700 AGAGTGAG
1 AGAGTGAG
83708 GTGATAACCG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.34, C:0.06, G:0.38, T:0.22
Consensus pattern (30 bp):
AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
Left flanking sequence: Indices 83140 -- 83639
TAATTAGACATGTTGAAGTTCGATATCGAAAGTAATTAAAACGGACGTCTGGCTTCCACCCCGTG
TTTTTCAAAGCAATAGATACATGGCCAAGAATGAAATTAATTGTTTCATCTCCCCATAGGCAAAA
GTTAATTCACCGTTTTATAGAGGCTACGAAGTAGGCTCGACTGTAAGGCTACGAAGTAGGTTTTA
GTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAG
TCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTKWKANGTTAGTCGAA
GGATACGAAGTAGGTTTTAGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATAC
GAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTAGTTAGTCGAAGGATACGAAGTAG
GTGAGACGTTAGTCGAAGGATACGAAGTAGGCTCGACTGATATGG
Right flanking sequence: Indices 83708 -- 84207
GTGATAACCGAAGGCTCGACTGTACGGAGAGGAAGACGGACGACCAAAGGCTCGACTGTACGGAG
AGGAAGACGGACGACCAAAGGCTCGACTGATAGGAGAGGAGATAGTCGCACGAGGGACTAGACGG
TACTCTTCGGAGAGTTTAACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCA
GGAGAGTTTAGGACGACCGGGACGAGACGATAGTCGAGGTATAGGAAGCACAGAGGAGACGGAGA
TAAAACAAACACGGTTTGTATAGGCAAAACCTATCAAAGCATGCACTTTTATCAGTTTTCTGCTT
TGAATCTTTCGATTCATTTGGCTCTCACGCTCACTTAATTAATGACATTTATGGGAATTCCCATA
TTTTTAATGGAATGAACCTGCCCTTTCTTTTCTGTTCGTAAAAGTATATAAATTGATACAAGAAT
ATTTATAGGACTCTTCTGATCAGACAAAAAATCTGTAATTGTCAG
Found at i:83765 original size:36 final size:36
Alignment explanation
Indices: 83718--83812 Score: 174
Period size: 36 Copynumber: 2.6 Consensus size: 36
83708 GTGATAACCG
83718 AAGGCTCGACTGTACGGAGAGGAAGACGGACGACCA
1 AAGGCTCGACTGTACGGAGAGGAAGACGGACGACCA
83754 AAGGCTCGACTGTACGGAGAGGAAGACGGACGACCA
1 AAGGCTCGACTGTACGGAGAGGAAGACGGACGACCA
83790 AAGGCTCGACTGATA-GGAGAGGA
1 AAGGCTCGACTG-TACGGAGAGGA
83813 GATAGTCGCA
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
36 56 0.97
37 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.37, T:0.09
Consensus pattern (36 bp):
AAGGCTCGACTGTACGGAGAGGAAGACGGACGACCA
Left flanking sequence: Indices 83218 -- 83717
TAGATACATGGCCAAGAATGAAATTAATTGTTTCATCTCCCCATAGGCAAAAGTTAATTCACCGT
TTTATAGAGGCTACGAAGTAGGCTCGACTGTAAGGCTACGAAGTAGGTTTTAGTTAGTCGAAGGA
TACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGA
AGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTKWKANGTTAGTCGAAGGATACGAAGTAG
GTTTTAGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGA
CGTTAGTCGAAGGATACGAAGTAGGTTTAGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGT
CGAAGGATACGAAGTAGGCTCGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGA
GTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGGTGATAACCG
Right flanking sequence: Indices 83813 -- 84312
GATAGTCGCACGAGGGACTAGACGGTACTCTTCGGAGAGTTTAACCGGGACGAGACGATAGTCGA
CTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACGACCGGGACGAGACGATAGTCGAGGT
ATAGGAAGCACAGAGGAGACGGAGATAAAACAAACACGGTTTGTATAGGCAAAACCTATCAAAGC
ATGCACTTTTATCAGTTTTCTGCTTTGAATCTTTCGATTCATTTGGCTCTCACGCTCACTTAATT
AATGACATTTATGGGAATTCCCATATTTTTAATGGAATGAACCTGCCCTTTCTTTTCTGTTCGTA
AAAGTATATAAATTGATACAAGAATATTTATAGGACTCTTCTGATCAGACAAAAAATCTGTAATT
GTCAGTAAAGTTGTTTCTTTAGTTTTATTTGTTTTGTTATTTGTTCGTTATATATTCTTAATCTG
ATTTTATTAATTATTACTTAATGAAACTAATTCTCTTAATTTAAA
Found at i:92425 original size:33 final size:33
Alignment explanation
Indices: 92388--92470 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 33
92378 TCGCCCTTCG
92388 CGTCTCATCTACCTAACGGTACCCGTCGACTAT
1 CGTCTCATCTACCTAACGGTACCCGTCGACTAT
* * * * **
92421 CGTCTCCTCTA-CT-TC-GTATCCTTCTCCTAT
1 CGTCTCATCTACCTAACGGTACCCGTCGACTAT
*
92451 CGTCTCAACTACCTAACGGT
1 CGTCTCATCTACCTAACGGT
92471 TCGGTTATCA
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
30 20 0.53
31 3 0.08
32 3 0.08
33 12 0.32
ACGTcount: A:0.18, C:0.37, G:0.12, T:0.33
Consensus pattern (33 bp):
CGTCTCATCTACCTAACGGTACCCGTCGACTAT
Left flanking sequence: Indices 91888 -- 92387
GGAAGGAAGAAGAGAGAGAGTGTCGCCGGGGAGTTGAGAGCGGATCGTCGTCTTTGTAGAATAAC
AAAGAGTACGATCGTCGGACTGGCCCCCTTCACATGACCTAAAAAGAGAAAGAGGTCCATGCGTG
CTACTATAAGGCCTCTAAACTCCTCCCTCAGGACACTGTTGCGTTGCCATGGGGACGGGGGGGAC
CCGACTTCCATAGGTCCTTGGTTCGACCTCCGGAGGAGAATTGAGGTCCTTGCGCGGGCGTCTCA
TCCCTGGCAACGTCGCTTGCTCTGTATGGAGTGCCCCGTGGTTCCTCAAGTGCCAGCCACAGAGA
GGAATGCCATCCCCCGGGGCGCTATTTCCCACTAACCACTCGCTCGCCGGCCGCTCGGGCTCCGC
GTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCTACCGGGAGCCTGGCCCCTTCGACTATCG
TCTCAACTCCTACTTCCTATACCTCGACTATCGTCTCGCCCTTCG
Right flanking sequence: Indices 92471 -- 92970
TCGGTTATCACCTCACTCTCCGTCGACTATCGTCTCCTCTACTTCGTATCCGTCGACTATCGTCT
CCTCTACCTACCGCCTTATCAGTCGAGCCTCGTGCTTCCTATACCTCGACTATCGTCTCGTCCCG
GTCCGTTGGTCGTCCGGCTCTTCGACTAACTAAAACCTTCTTCCTGATGGGACGGTATGCTTCTT
CCTATACCTCGACGGGAGTCTCGTCCCGTGCCGTTGGTCATCCTAAAACCTACTTCGTAGCCTAC
TTGTAGCCTTCTCCTATCGTCTCACCCCGTTAGCTGGTCGTCCTAAAACCTACTTCGTAGCCTTA
CAGTCGAGCCTACTTCGTAGCCTCTATAAACGGGGTTAGTCACTTTTGCAGTTATATGAAACGCA
ACTTTTACAAAATTACCTAACGGTACCATTCTACTATCGTCTCACCTACTTCGTACCCAGTACCA
TTCTACTAGCGTCTCACCTACTTCGTACCCAGTACCATTCTACTA
Found at i:92933 original size:37 final size:37
Alignment explanation
Indices: 92883--92992 Score: 202
Period size: 37 Copynumber: 3.0 Consensus size: 37
92873 TTACCTAACG
92883 GTACCATTCTACTATCGTCTCACCTACTTCGTACCCA
1 GTACCATTCTACTATCGTCTCACCTACTTCGTACCCA
*
92920 GTACCATTCTACTAGCGTCTCACCTACTTCGTACCCA
1 GTACCATTCTACTATCGTCTCACCTACTTCGTACCCA
*
92957 GTACCATTCTACTATCGTCTCGCCTACTTCGTACCC
1 GTACCATTCTACTATCGTCTCACCTACTTCGTACCC
92993 TTCGGTTATC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.20, C:0.38, G:0.10, T:0.32
Consensus pattern (37 bp):
GTACCATTCTACTATCGTCTCACCTACTTCGTACCCA
Left flanking sequence: Indices 92383 -- 92882
CTTCGCGTCTCATCTACCTAACGGTACCCGTCGACTATCGTCTCCTCTACTTCGTATCCTTCTCC
TATCGTCTCAACTACCTAACGGTTCGGTTATCACCTCACTCTCCGTCGACTATCGTCTCCTCTAC
TTCGTATCCGTCGACTATCGTCTCCTCTACCTACCGCCTTATCAGTCGAGCCTCGTGCTTCCTAT
ACCTCGACTATCGTCTCGTCCCGGTCCGTTGGTCGTCCGGCTCTTCGACTAACTAAAACCTTCTT
CCTGATGGGACGGTATGCTTCTTCCTATACCTCGACGGGAGTCTCGTCCCGTGCCGTTGGTCATC
CTAAAACCTACTTCGTAGCCTACTTGTAGCCTTCTCCTATCGTCTCACCCCGTTAGCTGGTCGTC
CTAAAACCTACTTCGTAGCCTTACAGTCGAGCCTACTTCGTAGCCTCTATAAACGGGGTTAGTCA
CTTTTGCAGTTATATGAAACGCAACTTTTACAAAATTACCTAACG
Right flanking sequence: Indices 92993 -- 93492
TTCGGTTATCACCTCACTCTCCGTCGACTATCGTCTCCTCTACCTACCGCCTTATCAGTCGAGCC
TTCTCCTATCGTCTCACCTACCTAAGGTAGTACCGTTAGCTGGTCGGACCTTCTTCTATCTTATT
TTCTGCTTTACTCCTCGGCTCCCTACTGCTCCAGCCGCTCGCTGTAATAGCTTGTTGCTTATCGG
GGGGATCGCACCCCGGGTGGTGTGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTATCCGG
GCGCACGCGTAGAGGCATGATTAGTTCCACGAATCTCACTGCACTGACCATAGTAAACTCCTTCT
CGTTGTACCAAAATGGAGGTCTGATTTGAACGACCAGGTACAGCATCACATTTGACACCTGAGGA
AGGTACAGCCCAACTATGAGGTACATCAGCGGGTGTTACAATCATACGTAGATGACTTTTGGCTG
GTACAACCACTCTATTGTCCACTTCTAATAAACGTGATTGACCCA
Found at i:97354 original size:30 final size:30
Alignment explanation
Indices: 97318--97508 Score: 314
Period size: 30 Copynumber: 6.4 Consensus size: 30
97308 YRRWSGANAS
97318 GATACGAAGTAGGTGAGACGTTAGTCGAAG
1 GATACGAAGTAGGTGAGACGTTAGTCGAAG
97348 GATACGAAGTAGGTGAGACGTTAGTCGAAG
1 GATACGAAGTAGGTGAGACGTTAGTCGAAG
***
97378 GATACGAAGTAGGTTTTA-GTTAGTCGAAG
1 GATACGAAGTAGGTGAGACGTTAGTCGAAG
97407 GATACGAAGTAGGTGAGACGTTAGTCGAAG
1 GATACGAAGTAGGTGAGACGTTAGTCGAAG
97437 GATACGAAGTAGGTGAGACGTTAGTCGAAG
1 GATACGAAGTAGGTGAGACGTTAGTCGAAG
***
97467 GATACGAAGTAGGTTTTA-GTTAGTCGAAG
1 GATACGAAGTAGGTGAGACGTTAGTCGAAG
97496 GATACGAAGTAGG
1 GATACGAAGTAGG
97509 CTCGACTGAT
Statistics
Matches: 151, Mismatches: 9, Indels: 3
0.93 0.06 0.02
Matches are distributed among these distances:
29 50 0.33
30 101 0.67
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.23
Consensus pattern (30 bp):
GATACGAAGTAGGTGAGACGTTAGTCGAAG
Left flanking sequence: Indices 96818 -- 97317
CTATGACCATATTATGTTAACTCTTCGTATTTCGTTCATCCCATCGGTATGCTCCCAGGTACCTG
TCATTGTGATCTGTTTGCCAAAACCCAGGGGTCTTTCTGTGGAAACCCTCACGAACAATCGTCGT
TTTTTGATGGTTTTTCCGCTTCTCACAGCAGCTCTTTCCGCACCTCCGGATATCTGGTGCCAAAT
CGTCGCCTCTTTCCTTCTTTCTTCGATAATAGAGTTGGCGTTATATGTGGCATCGATTGTACAAG
TTCGCGAAGAGGGCACGTTTTCTATAGAGTAATTAGACATGTTGAAGTTCGATATCGAAAGTAAT
TAAAACGGACGTCTGGCTTCCACCCCGTGTTTTTCAAAGCAATAGATACATGGCCAAGAATGAAA
TTAATTGTTTCATCTCCCCATAGGCAAAAGTTAATTCACCGTTTTATAGAGGCTACGAAGTAGGC
TCGACTGTAAGGCTACGAAGTAGGTTTTAKTTAGTYRRWSGANAS
Right flanking sequence: Indices 97509 -- 98008
CTCGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGTTAGTCGAGT
AGTAAAGGTAGAGGGCTTTTGTAAAAGTTGCATTTCATATAACTGTAAAAGTTATGATTTTGAAA
GTGAGTGGTTAGTCCAGCTGAATTACGCCCATGAAGAGCCGGGTTTTACCGTGCCCAGAACAGTA
GAGTAGAATGCAAGATTTGCTTGGTTACGGTTTCTAACCGACGAAGGCTTCGTTCTCACATCACC
TATCACATTATTGTTTAGTGAATCGGCTTGAATAAGGATGTGGTTTACACCCGCCTCCCTTTTCC
CTTCATTAACATGAGATTAGCCGCCCGGCCGGAAGAGCTTCCTTCTCTTGAACACGCTAGCTCAG
ATGGAGAACAGTGGCTGGTGGAACAGCCGGGAGAGAACTGACTCACACACAACGGCGAGCGGAGG
TCTTTCGTCAGCGACTTATATAATAGAAAAATAATATTAACTTAT
Found at i:97409 original size:59 final size:60
Alignment explanation
Indices: 97318--97508 Score: 314
Period size: 59 Copynumber: 3.2 Consensus size: 60
97308 YRRWSGANAS
97318 GATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAG
1 GATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAG
***
97378 GATACGAAGTAGGTTTTA-GTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAG
1 GATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAG
***
97437 GATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTA-GTTAGTCGAAG
1 GATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAG
97496 GATACGAAGTAGG
1 GATACGAAGTAGG
97509 CTCGACTGAT
Statistics
Matches: 121, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
59 80 0.66
60 41 0.34
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.23
Consensus pattern (60 bp):
GATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAG
Left flanking sequence: Indices 96818 -- 97317
CTATGACCATATTATGTTAACTCTTCGTATTTCGTTCATCCCATCGGTATGCTCCCAGGTACCTG
TCATTGTGATCTGTTTGCCAAAACCCAGGGGTCTTTCTGTGGAAACCCTCACGAACAATCGTCGT
TTTTTGATGGTTTTTCCGCTTCTCACAGCAGCTCTTTCCGCACCTCCGGATATCTGGTGCCAAAT
CGTCGCCTCTTTCCTTCTTTCTTCGATAATAGAGTTGGCGTTATATGTGGCATCGATTGTACAAG
TTCGCGAAGAGGGCACGTTTTCTATAGAGTAATTAGACATGTTGAAGTTCGATATCGAAAGTAAT
TAAAACGGACGTCTGGCTTCCACCCCGTGTTTTTCAAAGCAATAGATACATGGCCAAGAATGAAA
TTAATTGTTTCATCTCCCCATAGGCAAAAGTTAATTCACCGTTTTATAGAGGCTACGAAGTAGGC
TCGACTGTAAGGCTACGAAGTAGGTTTTAKTTAGTYRRWSGANAS
Right flanking sequence: Indices 97509 -- 98008
CTCGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGTTAGTCGAGT
AGTAAAGGTAGAGGGCTTTTGTAAAAGTTGCATTTCATATAACTGTAAAAGTTATGATTTTGAAA
GTGAGTGGTTAGTCCAGCTGAATTACGCCCATGAAGAGCCGGGTTTTACCGTGCCCAGAACAGTA
GAGTAGAATGCAAGATTTGCTTGGTTACGGTTTCTAACCGACGAAGGCTTCGTTCTCACATCACC
TATCACATTATTGTTTAGTGAATCGGCTTGAATAAGGATGTGGTTTACACCCGCCTCCCTTTTCC
CTTCATTAACATGAGATTAGCCGCCCGGCCGGAAGAGCTTCCTTCTCTTGAACACGCTAGCTCAG
ATGGAGAACAGTGGCTGGTGGAACAGCCGGGAGAGAACTGACTCACACACAACGGCGAGCGGAGG
TCTTTCGTCAGCGACTTATATAATAGAAAAATAATATTAACTTAT
Found at i:97416 original size:89 final size:89
Alignment explanation
Indices: 97318--97508 Score: 382
Period size: 89 Copynumber: 2.1 Consensus size: 89
97308 YRRWSGANAS
97318 GATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATAC
1 GATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATAC
97383 GAAGTAGGTTTTAGTTAGTCGAAG
66 GAAGTAGGTTTTAGTTAGTCGAAG
97407 GATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATAC
1 GATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATAC
97472 GAAGTAGGTTTTAGTTAGTCGAAG
66 GAAGTAGGTTTTAGTTAGTCGAAG
97496 GATACGAAGTAGG
1 GATACGAAGTAGG
97509 CTCGACTGAT
Statistics
Matches: 102, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
89 102 1.00
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.23
Consensus pattern (89 bp):
GATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATAC
GAAGTAGGTTTTAGTTAGTCGAAG
Left flanking sequence: Indices 96818 -- 97317
CTATGACCATATTATGTTAACTCTTCGTATTTCGTTCATCCCATCGGTATGCTCCCAGGTACCTG
TCATTGTGATCTGTTTGCCAAAACCCAGGGGTCTTTCTGTGGAAACCCTCACGAACAATCGTCGT
TTTTTGATGGTTTTTCCGCTTCTCACAGCAGCTCTTTCCGCACCTCCGGATATCTGGTGCCAAAT
CGTCGCCTCTTTCCTTCTTTCTTCGATAATAGAGTTGGCGTTATATGTGGCATCGATTGTACAAG
TTCGCGAAGAGGGCACGTTTTCTATAGAGTAATTAGACATGTTGAAGTTCGATATCGAAAGTAAT
TAAAACGGACGTCTGGCTTCCACCCCGTGTTTTTCAAAGCAATAGATACATGGCCAAGAATGAAA
TTAATTGTTTCATCTCCCCATAGGCAAAAGTTAATTCACCGTTTTATAGAGGCTACGAAGTAGGC
TCGACTGTAAGGCTACGAAGTAGGTTTTAKTTAGTYRRWSGANAS
Right flanking sequence: Indices 97509 -- 98008
CTCGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGTTAGTCGAGT
AGTAAAGGTAGAGGGCTTTTGTAAAAGTTGCATTTCATATAACTGTAAAAGTTATGATTTTGAAA
GTGAGTGGTTAGTCCAGCTGAATTACGCCCATGAAGAGCCGGGTTTTACCGTGCCCAGAACAGTA
GAGTAGAATGCAAGATTTGCTTGGTTACGGTTTCTAACCGACGAAGGCTTCGTTCTCACATCACC
TATCACATTATTGTTTAGTGAATCGGCTTGAATAAGGATGTGGTTTACACCCGCCTCCCTTTTCC
CTTCATTAACATGAGATTAGCCGCCCGGCCGGAAGAGCTTCCTTCTCTTGAACACGCTAGCTCAG
ATGGAGAACAGTGGCTGGTGGAACAGCCGGGAGAGAACTGACTCACACACAACGGCGAGCGGAGG
TCTTTCGTCAGCGACTTATATAATAGAAAAATAATATTAACTTAT
Found at i:97557 original size:30 final size:30
Alignment explanation
Indices: 97523--97586 Score: 128
Period size: 30 Copynumber: 2.1 Consensus size: 30
97513 ACTGATATGG
97523 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
1 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
97553 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
1 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
97583 AGAG
1 AGAG
97587 GGCTTTTGTA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 34 1.00
ACGTcount: A:0.34, C:0.06, G:0.38, T:0.22
Consensus pattern (30 bp):
AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
Left flanking sequence: Indices 97023 -- 97522
TTCCTTCTTTCTTCGATAATAGAGTTGGCGTTATATGTGGCATCGATTGTACAAGTTCGCGAAGA
GGGCACGTTTTCTATAGAGTAATTAGACATGTTGAAGTTCGATATCGAAAGTAATTAAAACGGAC
GTCTGGCTTCCACCCCGTGTTTTTCAAAGCAATAGATACATGGCCAAGAATGAAATTAATTGTTT
CATCTCCCCATAGGCAAAAGTTAATTCACCGTTTTATAGAGGCTACGAAGTAGGCTCGACTGTAA
GGCTACGAAGTAGGTTTTAKTTAGTYRRWSGANASGATACGAAGTAGGTGAGACGTTAGTCGAAG
GATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCGAAGGATACG
AAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTA
GGTTTTAGTTAGTCGAAGGATACGAAGTAGGCTCGACTGATATGG
Right flanking sequence: Indices 97587 -- 98086
GGCTTTTGTAAAAGTTGCATTTCATATAACTGTAAAAGTTATGATTTTGAAAGTGAGTGGTTAGT
CCAGCTGAATTACGCCCATGAAGAGCCGGGTTTTACCGTGCCCAGAACAGTAGAGTAGAATGCAA
GATTTGCTTGGTTACGGTTTCTAACCGACGAAGGCTTCGTTCTCACATCACCTATCACATTATTG
TTTAGTGAATCGGCTTGAATAAGGATGTGGTTTACACCCGCCTCCCTTTTCCCTTCATTAACATG
AGATTAGCCGCCCGGCCGGAAGAGCTTCCTTCTCTTGAACACGCTAGCTCAGATGGAGAACAGTG
GCTGGTGGAACAGCCGGGAGAGAACTGACTCACACACAACGGCGAGCGGAGGTCTTTCGTCAGCG
ACTTATATAATAGAAAAATAATATTAACTTATGATTAAGTTTCCATTCCATTTCTTCCACTCTGA
TTAGATAAGATCAAGATATTTATATTTACTGATAATGGTGAGGTT
Found at i:103051 original size:12 final size:12
Alignment explanation
Indices: 103034--103060 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
103024 CTCGACTGTA
103034 AGGCTACGAAGT
1 AGGCTACGAAGT
103046 AGGCTACGAAGT
1 AGGCTACGAAGT
103058 AGG
1 AGG
103061 TTGAAGTTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.15, G:0.37, T:0.15
Consensus pattern (12 bp):
AGGCTACGAAGT
Left flanking sequence: Indices 102534 -- 103033
CCTATGACATAAGCGCTCTTGGGTGGGGTGGGGCCAACCACCACAAACGCCAGCCAGGTCTTTGC
CGTCGTAGCACGTGGTTGGTGCACTAGGCTGATCGAGACTCTACTACTTGTTCGGGAGGATCTGG
CACCTTCTCCTGACGGAGAGTAAGCAACACTACTAATTCCGTTCCGGCCGAGCCGGACCGTCGAG
TCGAATTGATCGTGTCATGTACAACATCCATCAATGATGGTTCCTCCATGTCCATTGATTTAGTA
GACTCCTTCCCCCAACGGATGAAAAGTAATAAGAGCTAATAGCGCGCTACTTTATTACTTTGAAT
CGAGGGGCCCGAACCAAACCGACGAACGGAACCGGAATCTATAGTTTCGACTCACTCTCGAAAGC
AAAGCCGGTGGCCCGAGGGTAGGTTCAAGGCTCGACTGATAAGGAGAGGAAGTGGGCTCGACTGG
GCCCGGTGACCGAGGATAGGATACCGGACGGTAGGCTCGACTGTA
Right flanking sequence: Indices 103061 -- 103560
TTGAAGTTAGTCGAGTAGTAAAGGTAGAGTGAGGTGATAACCGAAGGTGAAGCGTTAGTCGAAAG
TGAGGTGATAACCGAAGGAGAAAGGTAGATTTTAGTTAGGAGAAGGTTTTAGTTAGTCGAAAGTG
AGGTGATAACCGAAGCCGTGACGGTAGATTTTAGTTAGGAGAAGGATACGAAGTAGAGGAGACGA
TAGTCGACGGGCGAGACGATAGTCGAGATATTAGGAAGAAGAGTACCGTCCAATCCTCCAGTACG
GTGAGACGATAGTAGAATAGGGAACGAGACGCTAGCTACTTATCTCCGAAGACCCTTGAACCTAC
CCTCGGGATAAAGAACTATCACGCATTTCATTGTCCCACCTCGCTTTCGAGCTTTACGGAGAAAA
GCGGGTCGGCCCCGGTCCCCAGTCCTACTAATTCCCCAACTATAGATTCCGGGGATTCCTCCGTC
CTACTAAACTATAGAGACTAGGGATTCCGGCGACGTGCCGGGGAT
Found at i:103141 original size:18 final size:18
Alignment explanation
Indices: 103088--103141 Score: 54
Period size: 18 Copynumber: 3.0 Consensus size: 18
103078 GTAAAGGTAG
103088 AGTGAGGTGATAACCGAA
1 AGTGAGGTGATAACCGAA
* * * * **
103106 GGTGAAGCGTTAGTCGAA
1 AGTGAGGTGATAACCGAA
103124 AGTGAGGTGATAACCGAA
1 AGTGAGGTGATAACCGAA
103142 GGAGAAAGGT
Statistics
Matches: 24, Mismatches: 12, Indels: 0
0.67 0.33 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.35, C:0.11, G:0.35, T:0.19
Consensus pattern (18 bp):
AGTGAGGTGATAACCGAA
Left flanking sequence: Indices 102588 -- 103087
CAGGTCTTTGCCGTCGTAGCACGTGGTTGGTGCACTAGGCTGATCGAGACTCTACTACTTGTTCG
GGAGGATCTGGCACCTTCTCCTGACGGAGAGTAAGCAACACTACTAATTCCGTTCCGGCCGAGCC
GGACCGTCGAGTCGAATTGATCGTGTCATGTACAACATCCATCAATGATGGTTCCTCCATGTCCA
TTGATTTAGTAGACTCCTTCCCCCAACGGATGAAAAGTAATAAGAGCTAATAGCGCGCTACTTTA
TTACTTTGAATCGAGGGGCCCGAACCAAACCGACGAACGGAACCGGAATCTATAGTTTCGACTCA
CTCTCGAAAGCAAAGCCGGTGGCCCGAGGGTAGGTTCAAGGCTCGACTGATAAGGAGAGGAAGTG
GGCTCGACTGGGCCCGGTGACCGAGGATAGGATACCGGACGGTAGGCTCGACTGTAAGGCTACGA
AGTAGGCTACGAAGTAGGTTGAAGTTAGTCGAGTAGTAAAGGTAG
Right flanking sequence: Indices 103142 -- 103641
GGAGAAAGGTAGATTTTAGTTAGGAGAAGGTTTTAGTTAGTCGAAAGTGAGGTGATAACCGAAGC
CGTGACGGTAGATTTTAGTTAGGAGAAGGATACGAAGTAGAGGAGACGATAGTCGACGGGCGAGA
CGATAGTCGAGATATTAGGAAGAAGAGTACCGTCCAATCCTCCAGTACGGTGAGACGATAGTAGA
ATAGGGAACGAGACGCTAGCTACTTATCTCCGAAGACCCTTGAACCTACCCTCGGGATAAAGAAC
TATCACGCATTTCATTGTCCCACCTCGCTTTCGAGCTTTACGGAGAAAAGCGGGTCGGCCCCGGT
CCCCAGTCCTACTAATTCCCCAACTATAGATTCCGGGGATTCCTCCGTCCTACTAAACTATAGAG
ACTAGGGATTCCGGCGACGTGCCGGGGATCTTTCGCTTTTGCCATCTCTATAGAGATACTATGAG
TCCTCCGTCCCAGATTCCCTCGCCGCGGCCATCTGGTTCACCGGT
Found at i:103227 original size:64 final size:63
Alignment explanation
Indices: 103114--103235 Score: 201
Period size: 63 Copynumber: 1.9 Consensus size: 63
103104 AAGGTGAAGC
103114 GTTAGTCGAAAGTGAGGTGATAACCGAAGGAGAAAGGTAGATTTTAGTTAGGAGAAGGTTTTA
1 GTTAGTCGAAAGTGAGGTGATAACCGAAGGAGAAAGGTAGATTTTAGTTAGGAGAAGGTTTTA
* *
103177 GTTAGTCGAAAGTGAGGTGATAACCGAAGCCGTG-ACGGTAGATTTTAGTTAGGAGAAGG
1 GTTAGTCGAAAGTGAGGTGATAACCGAAG--GAGAAAGGTAGATTTTAGTTAGGAGAAGG
103236 ATACGAAGTA
Statistics
Matches: 55, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
63 29 0.53
64 24 0.44
65 2 0.04
ACGTcount: A:0.33, C:0.07, G:0.34, T:0.25
Consensus pattern (63 bp):
GTTAGTCGAAAGTGAGGTGATAACCGAAGGAGAAAGGTAGATTTTAGTTAGGAGAAGGTTTTA
Left flanking sequence: Indices 102614 -- 103113
TTGGTGCACTAGGCTGATCGAGACTCTACTACTTGTTCGGGAGGATCTGGCACCTTCTCCTGACG
GAGAGTAAGCAACACTACTAATTCCGTTCCGGCCGAGCCGGACCGTCGAGTCGAATTGATCGTGT
CATGTACAACATCCATCAATGATGGTTCCTCCATGTCCATTGATTTAGTAGACTCCTTCCCCCAA
CGGATGAAAAGTAATAAGAGCTAATAGCGCGCTACTTTATTACTTTGAATCGAGGGGCCCGAACC
AAACCGACGAACGGAACCGGAATCTATAGTTTCGACTCACTCTCGAAAGCAAAGCCGGTGGCCCG
AGGGTAGGTTCAAGGCTCGACTGATAAGGAGAGGAAGTGGGCTCGACTGGGCCCGGTGACCGAGG
ATAGGATACCGGACGGTAGGCTCGACTGTAAGGCTACGAAGTAGGCTACGAAGTAGGTTGAAGTT
AGTCGAGTAGTAAAGGTAGAGTGAGGTGATAACCGAAGGTGAAGC
Right flanking sequence: Indices 103236 -- 103735
ATACGAAGTAGAGGAGACGATAGTCGACGGGCGAGACGATAGTCGAGATATTAGGAAGAAGAGTA
CCGTCCAATCCTCCAGTACGGTGAGACGATAGTAGAATAGGGAACGAGACGCTAGCTACTTATCT
CCGAAGACCCTTGAACCTACCCTCGGGATAAAGAACTATCACGCATTTCATTGTCCCACCTCGCT
TTCGAGCTTTACGGAGAAAAGCGGGTCGGCCCCGGTCCCCAGTCCTACTAATTCCCCAACTATAG
ATTCCGGGGATTCCTCCGTCCTACTAAACTATAGAGACTAGGGATTCCGGCGACGTGCCGGGGAT
CTTTCGCTTTTGCCATCTCTATAGAGATACTATGAGTCCTCCGTCCCAGATTCCCTCGCCGCGGC
CATCTGGTTCACCGGTACTACCAAAAAGTCTCATGCTTACTTCCCTCTTTCTGATATATAAGTCT
CGATCTCAGACCACGAGGGCCCCCCGGTCGTGCTTCTGGTTTCCA
Found at i:106063 original size:15 final size:15
Alignment explanation
Indices: 106043--106071 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
106033 NGGNGNGNNT
106043 GAGACGATAGTCGAA
1 GAGACGATAGTCGAA
106058 GAGACGATAGTCGA
1 GAGACGATAGTCGA
106072 GGGATAGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.14, G:0.34, T:0.14
Consensus pattern (15 bp):
GAGACGATAGTCGAA
Left flanking sequence: Indices 105543 -- 106042
GGGGGATGAGGGCTTAGGAGCATTAGATGAGGAACAAGAACAACTGCTGCCAGGCCGCCGGTCCT
ATATAGAAGTATGTCCTGGTCACCGGAATCAAATGGGGAATTAGTAGGTCATTCAATGCGTGATA
CCGGATGTCACGAAGTGCGCTCGACCGTATGGGAGACCCTTGTACCTAACCCTCGGCCACCTAGC
CCTCCGGAATGGACGGAGGAATCAGAATTCTAGTAGGATACGAAGTAGTTTACTGTTTACTATAG
ATTACTCAAGCAACACCGGAATTAGTAGTTCCTCCGGTAAGACCGGGAGACAAAGGGGACTCGAC
TGATAAAGAGAGGATAGCGCGAATGGAAAAAATGGACACTGATCTCCTTTGGCCGAATTCCCCGC
AGCTACCATTACTATTGGACGTTGGACAGGGGGGGGCGACCGTCCGTTGAACTACCAAAAAAGGG
AACTTTATGCATTGGTTTTAGGACGACCAGCTAACNGGNGNGNNT
Right flanking sequence: Indices 106072 -- 106571
GGGATAGGAAGAAGCATAGGAAGAAGGTGAGACGATATGAGAAGGTCCGACCAGCTAACGGTACT
ACCGGCGAATGGTATAAACCGGTAATCTTTTTTCCCGTTCCGCCGCTTTCCCGCCAGAAATCCGA
CGGTTCCACATGAGCTCCCGTTCTGCGGCGTGGTGGCAGGACCACTAGGGGATTGGCTCCGGGTG
TAGGTAGGGTCAAATTCGCAGGGGTCATGCAAATACATAGGCCCCTTCCCTTCTGCCGAGTTGTT
TAGAAGGCGCTTTCCGTTCGACGGTCCCCCAAACGAAGGGTACGGCAGGTAGTACGGGCCCTCTG
ACTTCCAGCTATGTGCTGTGCGGCTCGCGCGAAGCGAATGAAGGGAAGCTCTTCGAGCTTTCTCC
GCCAGCGGTTTATGTAGTGGTCGGTCACCCCAAGCTCGCTAAGCTTTGCTTCCCCCCCTCCCTAG
TCGAGTTTACGAAGCTTCGCTTCTTGTAGTTGGCCCTCCATGCCT
Found at i:106764 original size:15 final size:15
Alignment explanation
Indices: 106744--106772 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
106734 AGGCGTGAGT
106744 GAGACGATAGTCGAA
1 GAGACGATAGTCGAA
106759 GAGACGATAGTCGA
1 GAGACGATAGTCGA
106773 GGGATAGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.14, G:0.34, T:0.14
Consensus pattern (15 bp):
GAGACGATAGTCGAA
Left flanking sequence: Indices 106244 -- 106743
CACTAGGGGATTGGCTCCGGGTGTAGGTAGGGTCAAATTCGCAGGGGTCATGCAAATACATAGGC
CCCTTCCCTTCTGCCGAGTTGTTTAGAAGGCGCTTTCCGTTCGACGGTCCCCCAAACGAAGGGTA
CGGCAGGTAGTACGGGCCCTCTGACTTCCAGCTATGTGCTGTGCGGCTCGCGCGAAGCGAATGAA
GGGAAGCTCTTCGAGCTTTCTCCGCCAGCGGTTTATGTAGTGGTCGGTCACCCCAAGCTCGCTAA
GCTTTGCTTCCCCCCCTCCCTAGTCGAGTTTACGAAGCTTCGCTTCTTGTAGTTGGCCCTCCATG
CCTCCCATACATATGACCAGTGCTTACCTCCTTCCAGCCCATCTTGTTGGGCCTGGCCTCCTGCG
CCAATTTAGGCTTCGTCTCGGAAGCGAAGCTTCGTAGACGAGTCGCTGAGGGCTAGGTACAAGGG
AACTTTATGCGTTGGTTTTAGGACGACCAGCTAACAGGCGTGAGT
Right flanking sequence: Indices 106773 -- 107272
GGGATAGGAAGAATGGTATAATCTATTATATTCTAGAATTTCCTCTCTTTATCAGTCTTTAGTGC
CGCTGGTCGTCCGGCTAACTTCGTAGCCTACCTCACGGTATCCTAGCCTCGGTCACCTACTTCAT
ACCCTCCGGTCACCTTGCCGTAAGACGACCTGGGCAATTGGAGATAAGGCTTCGGAACTTTGGTC
AAATCCTACTATAACTATAGAGAAGATACTGTATTTGATTCCGTGGCCGGAGATTCCGGTAATTA
ATTCCGGGGATTCCGGAAAGGCTGGCCATTCGCGCGCGAGAAGGCTCTGTCCATTCAGTTCAAGA
GACCGCAGCGGAGTGGAGCAGCCGCGACACTTCCTTACCATCAGCTGGATCTCGCTGGTGCCACC
TAAACAGTAGGCGGCGGATGTGTGACGTTTGGAGTTGTCGTTCGTGCACCTGTCCCCAATAGAAG
AATGAGTGATCCCTTCCCCTGTGGATCATGGCCTTACCACTCGGT
Found at i:115471 original size:18 final size:18
Alignment explanation
Indices: 115448--115485 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
115438 AGCGGGTACG
115448 TCCGCGAGAGGACTGTGA
1 TCCGCGAGAGGACTGTGA
115466 TCCGCGAGAGGACTGTGA
1 TCCGCGAGAGGACTGTGA
115484 TC
1 TC
115486 TGCGTGGCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.24, G:0.37, T:0.18
Consensus pattern (18 bp):
TCCGCGAGAGGACTGTGA
Left flanking sequence: Indices 114948 -- 115447
AAAGCGTCAGTAAGACCAAACAGAGAGTTAGCAGCATAGACAAGGATGGATTTGTGAATGAGAAA
TAGATATTTTCCACCTTCATCCCAATGAATGGGTTAATACCAAATTGATCAAGTGGGCTTCCGCT
ACCCGGACCCATCCAGGGGTTATCATCGTAACTACCTTCACCAGTACTATCCCAGGCTGGACGAG
TACTACCAGCATCCGTCCCGCTCCCAGCATCCCCTTTGCCCTGATTGGATGAACCCACTCCATCC
TGGCCCGGCTGCGCTTCAGCCTCGACTCCCCCTGTCCTCTCTTCGCTGGATCTAATACTGTGTGA
AGCGGGTACGTCCGCGAGAGGACTGTGATCTACGTGGCCTATTGGAGCATTTGCCACTCCTTCCT
GTGGAAAGCCCGGCAGCGCTTCAGCCTCGACTCCCCCTATAACGACATCCCAGGAATTGTAATAA
CTGGCGACCCATTTCCCCGGTTCGGAAATGTGTGAAGCGGGTACG
Right flanking sequence: Indices 115486 -- 115985
TGCGTGGCCGGGACTGGACGAGGAAGAGCCCTCATCGGGATCGTGGGAAGTGTCACTGTCAGGCG
TTTCACCATCATTCGATGTAATTCCAGTTCCAACCATTGCCAGTTTTGCGTCTAAGTTGTTGTTA
TTATTTGTCCCCCGCCCCGGAGCTCCACCAACAGACACCCCGTCTTCCATTAACCCATTTCGGGC
TCTGAAACTCCTGATGACAAATATGGATGGTACGAAAACGAAAATCAGAATGAGGAAGAAAAAGA
TATCGTGATGTAAGTCATTTATTCCTTGCAGGAGAAGTGTTGCTGCGTCTCTTAATCCTAATTGC
CATGCATCACAAGGAGCGATTATGAGGTGGATGAATGAAATAGACAATGAAAAGATCAATTTTCC
GAACACTAATACAATAAGTAGATACATTTAGATAGAGTGTATTCAAATAAAGCCACAAATCAGAC
AATAGTTATACGTTCGGAAGAAAGGTCTCTGGTTATGCTTCTTCC
Found at i:116089 original size:62 final size:62
Alignment explanation
Indices: 115992--116111 Score: 240
Period size: 62 Copynumber: 1.9 Consensus size: 62
115982 TTCCTATACC
115992 TCGACTATCGTCTCGTCCCGGTCGTCCTAAACTCTCCTGAGACTATCGTCTCGTCCCTAAAG
1 TCGACTATCGTCTCGTCCCGGTCGTCCTAAACTCTCCTGAGACTATCGTCTCGTCCCTAAAG
116054 TCGACTATCGTCTCGTCCCGGTCGTCCTAAACTCTCCTGAGACTATCGTCTCGTCCCT
1 TCGACTATCGTCTCGTCCCGGTCGTCCTAAACTCTCCTGAGACTATCGTCTCGTCCCT
116112 CGTGCGACTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.16, C:0.37, G:0.17, T:0.30
Consensus pattern (62 bp):
TCGACTATCGTCTCGTCCCGGTCGTCCTAAACTCTCCTGAGACTATCGTCTCGTCCCTAAAG
Left flanking sequence: Indices 115492 -- 115991
GCCGGGACTGGACGAGGAAGAGCCCTCATCGGGATCGTGGGAAGTGTCACTGTCAGGCGTTTCAC
CATCATTCGATGTAATTCCAGTTCCAACCATTGCCAGTTTTGCGTCTAAGTTGTTGTTATTATTT
GTCCCCCGCCCCGGAGCTCCACCAACAGACACCCCGTCTTCCATTAACCCATTTCGGGCTCTGAA
ACTCCTGATGACAAATATGGATGGTACGAAAACGAAAATCAGAATGAGGAAGAAAAAGATATCGT
GATGTAAGTCATTTATTCCTTGCAGGAGAAGTGTTGCTGCGTCTCTTAATCCTAATTGCCATGCA
TCACAAGGAGCGATTATGAGGTGGATGAATGAAATAGACAATGAAAAGATCAATTTTCCGAACAC
TAATACAATAAGTAGATACATTTAGATAGAGTGTATTCAAATAAAGCCACAAATCAGACAATAGT
TATACGTTCGGAAGAAAGGTCTCTGGTTATGCTTCTTCCTATACC
Right flanking sequence: Indices 116112 -- 116611
CGTGCGACTATCTCCTCTCCTATCAGTCGAGCCTTTGGTCGTCCGTCTTCCTCTCCCTATCGGTC
GAGCCTTTGGTCGTCCGTCTTCCTATCCCTTACGGGAATCGAACCCGTGTCTTCGACATGAAAAG
ACGATGTCCTAACCACTGGACGAAAGGGACCAAAAAGAAATTCGAGTCTTATGGTTCACTTTTCA
CAAAGGGGCAAAGCACGATAGGTTTCTCACAGTGGCTAACAAGTTTCCTTGTCCGCGTTGCTGGG
TTAAATCTAGTACACTCAGACTTTCACTTACTATACGTAAGTCCATGGAATCTGAAACACAGGTC
TAAATCGCAATTGTCTCTACAATAAACAACAATCTCATAAACTTGGTTGTCGCGAATGAGAGGTT
TCACCGTATAACCCAATATGTGCGTAAAACTTCAAAAGAATGATACCATCGAAACTCACAGCTTT
TAGAAAAAGAAGAGGGCAAGAACGGAAGAGTTTAACGGAGATAGG
Found at i:116178 original size:37 final size:37
Alignment explanation
Indices: 116124--116206 Score: 141
Period size: 37 Copynumber: 2.3 Consensus size: 37
116114 TGCGACTATC
116124 TCCTCT-CCTATCAGTCGAGCCTTTGGTCGTCCGTCT
1 TCCTCTCCCTATCAGTCGAGCCTTTGGTCGTCCGTCT
*
116160 TCCTCTCCCTATCGGTCGAGCCTTTGGTCGTCCGTCT
1 TCCTCTCCCTATCAGTCGAGCCTTTGGTCGTCCGTCT
*
116197 TCCTATCCCT
1 TCCTCTCCCT
116207 TACGGGAATC
Statistics
Matches: 44, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
36 6 0.14
37 38 0.86
ACGTcount: A:0.07, C:0.39, G:0.18, T:0.36
Consensus pattern (37 bp):
TCCTCTCCCTATCAGTCGAGCCTTTGGTCGTCCGTCT
Left flanking sequence: Indices 115624 -- 116123
CCCCCGCCCCGGAGCTCCACCAACAGACACCCCGTCTTCCATTAACCCATTTCGGGCTCTGAAAC
TCCTGATGACAAATATGGATGGTACGAAAACGAAAATCAGAATGAGGAAGAAAAAGATATCGTGA
TGTAAGTCATTTATTCCTTGCAGGAGAAGTGTTGCTGCGTCTCTTAATCCTAATTGCCATGCATC
ACAAGGAGCGATTATGAGGTGGATGAATGAAATAGACAATGAAAAGATCAATTTTCCGAACACTA
ATACAATAAGTAGATACATTTAGATAGAGTGTATTCAAATAAAGCCACAAATCAGACAATAGTTA
TACGTTCGGAAGAAAGGTCTCTGGTTATGCTTCTTCCTATACCTCGACTATCGTCTCGTCCCGGT
CGTCCTAAACTCTCCTGAGACTATCGTCTCGTCCCTAAAGTCGACTATCGTCTCGTCCCGGTCGT
CCTAAACTCTCCTGAGACTATCGTCTCGTCCCTCGTGCGACTATC
Right flanking sequence: Indices 116207 -- 116706
TACGGGAATCGAACCCGTGTCTTCGACATGAAAAGACGATGTCCTAACCACTGGACGAAAGGGAC
CAAAAAGAAATTCGAGTCTTATGGTTCACTTTTCACAAAGGGGCAAAGCACGATAGGTTTCTCAC
AGTGGCTAACAAGTTTCCTTGTCCGCGTTGCTGGGTTAAATCTAGTACACTCAGACTTTCACTTA
CTATACGTAAGTCCATGGAATCTGAAACACAGGTCTAAATCGCAATTGTCTCTACAATAAACAAC
AATCTCATAAACTTGGTTGTCGCGAATGAGAGGTTTCACCGTATAACCCAATATGTGCGTAAAAC
TTCAAAAGAATGATACCATCGAAACTCACAGCTTTTAGAAAAAGAAGAGGGCAAGAACGGAAGAG
TTTAACGGAGATAGGAAACTCAATATGAAAGTGGAGAAGGATACGAAGTAGAGGAGACGATAGTC
GAAGGAAAACATCGACGAAAGACTTGGGACTGGAATCAGAATATC
Found at i:118604 original size:16 final size:16
Alignment explanation
Indices: 118583--118634 Score: 95
Period size: 16 Copynumber: 3.2 Consensus size: 16
118573 CACGATACGC
118583 AGTAGGTGTTGTGGTA
1 AGTAGGTGTTGTGGTA
*
118599 AGTAGGTGTTGTGGTC
1 AGTAGGTGTTGTGGTA
118615 AGTAGGTGTTGTGGTA
1 AGTAGGTGTTGTGGTA
118631 AGTA
1 AGTA
118635 TTGTAGCTCA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.19, C:0.02, G:0.42, T:0.37
Consensus pattern (16 bp):
AGTAGGTGTTGTGGTA
Left flanking sequence: Indices 118083 -- 118582
TATGAGTCAAGCTCTTTTACCCATAACCTCATTAAGTTCTGGTGTCCTTGTCAAACTAGCACGGA
AGCAGAGTGGTTCGATGGCTTGGTTAAGAAACAATGACTCTCCCAATCGCAGGTCTTCTCTAGCC
GCGCAGCAGATGCTAGACTATTAGTATGCATAGTCGTATAAATGGAGCTAGCGAGTTGTCTTTTT
CAGAAGTAATGATATTACCAATACCACACTTATCATGAGCATGACAACCTACAGGCTGCCGATGG
TTCTATATTCAATATGATAGGGTTAGACATAACTGTTTTGATTCGCGCTACCAGTTCGTAATGAC
TTCGTAATGGAGTAAAAGGATTCGAACCTTTGCATGCCGGTACCAAAAACCGATGCCTTACCACT
TGGCTATACTCCATATGGATTTTCAGTCCCTTCCAAGCCTATTTGTTTGTTTGGTCTTCCTTCGT
CAGCGTAAGACGACCTGTCACGATACGATTGTGGTCACGATACGC
Right flanking sequence: Indices 118635 -- 119134
TTGTAGCTCATTACATTGTAGCTCTTCAAGCCAATGGCCTTTCAGTCGTCAATAGTGTTCCTGTT
CCTTTCAGTCGTCAATAGCAGCTGCTGTTACTGCTTCTGACCTTTCATTCTTCTCCCGCAGCTTC
CTCCGGGCCGGTCACCTCCTAGCCTCGGTCACCTTCTTCTTACACCACCACTTTGGAGACCTGCA
CCGGTCGGAGATGTGGTAGACCGACAGGTCGGTGAGACGGACGACCAACGGACCGGGACGAGACG
ATAGTCGAGGTATAGGAAGACGGGAAGACGGACGACCAGCGGGAGGGCGTGAGTGAGACGATAGT
CGAAGAGACGATAGTCGAGGGATAGGAAGTAGTGGAGACGCGACGGGGAGACGTTAGTCGAATAG
TAAAGGTAGGTACTACCGAGCCGGTAGGGTACGTAGTAGACTTTAAGCCTGGGTCATAGAATGGA
TCTCGATCCGCTCTTCCGGCCAGGCCCCGGTTCCCAGGGTTAGGA
Found at i:118969 original size:15 final size:15
Alignment explanation
Indices: 118949--118977 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
118939 GGGCGTGAGT
118949 GAGACGATAGTCGAA
1 GAGACGATAGTCGAA
118964 GAGACGATAGTCGA
1 GAGACGATAGTCGA
118978 GGGATAGGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.38, C:0.14, G:0.34, T:0.14
Consensus pattern (15 bp):
GAGACGATAGTCGAA
Left flanking sequence: Indices 118449 -- 118948
ACCAAAAACCGATGCCTTACCACTTGGCTATACTCCATATGGATTTTCAGTCCCTTCCAAGCCTA
TTTGTTTGTTTGGTCTTCCTTCGTCAGCGTAAGACGACCTGTCACGATACGATTGTGGTCACGAT
ACGCAGTAGGTGTTGTGGTAAGTAGGTGTTGTGGTCAGTAGGTGTTGTGGTAAGTATTGTAGCTC
ATTACATTGTAGCTCTTCAAGCCAATGGCCTTTCAGTCGTCAATAGTGTTCCTGTTCCTTTCAGT
CGTCAATAGCAGCTGCTGTTACTGCTTCTGACCTTTCATTCTTCTCCCGCAGCTTCCTCCGGGCC
GGTCACCTCCTAGCCTCGGTCACCTTCTTCTTACACCACCACTTTGGAGACCTGCACCGGTCGGA
GATGTGGTAGACCGACAGGTCGGTGAGACGGACGACCAACGGACCGGGACGAGACGATAGTCGAG
GTATAGGAAGACGGGAAGACGGACGACCAGCGGGAGGGCGTGAGT
Right flanking sequence: Indices 118978 -- 119477
GGGATAGGAAGTAGTGGAGACGCGACGGGGAGACGTTAGTCGAATAGTAAAGGTAGGTACTACCG
AGCCGGTAGGGTACGTAGTAGACTTTAAGCCTGGGTCATAGAATGGATCTCGATCCGCTCTTCCG
GCCAGGCCCCGGTTCCCAGGGTTAGGAGGGTATTCCCTATATTGAGCCTACTCAGATCAGCCCCC
AAGTCGTTGATTCTCTTTTGGAAATCGGCCGGTGATGATTCTAATAATTCCGGCGGACCCGACGC
ATTTCGAGATCCCAAGTCTCCAAGTGGGCCCTCTTGGCCAACCACGACCGTCGGCTTTTTAGAGA
ATCCCGCTCCTGTGTCGTAGGACTTGTAGCTCGGCAGTCCACCGGGTAGGTTTGTTGGTACTTCC
AGTTTCGAGTGTCTTCTTGGATAGTTAGGGAGGCCCATAGGCGCGAGATGTACCTTGTGGGGGGG
CGGCGGTCCCCTGGACATAGTCCTTTTTTCAGGCAGTGGCCGTTT
Found at i:129015 original size:23 final size:23
Alignment explanation
Indices: 128952--129002 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
128942 TTCTATATAT
128952 GTTAAGAAAGCATCATATGTAAA
1 GTTAAGAAAGCATCATATGTAAA
128975 GTTAAGAAAGCATCATATGTAAA
1 GTTAAGAAAGCATCATATGTAAA
128998 GTTAA
1 GTTAA
129003 TAAATCATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.47, C:0.08, G:0.18, T:0.27
Consensus pattern (23 bp):
GTTAAGAAAGCATCATATGTAAA
Left flanking sequence: Indices 128452 -- 128951
CAGGGCTATTTACAAGGGATTATCCCGGATCTACGCCAGGTATTGACGGTGATTCTCAAATATCG
CATAACGTAATGTGGTACGACGGGATAGAATGCAATAGAAACAAAGACAGGGAAGGAGTTACCTA
CTCCTAACAGCCAAAGCTAGCCCTTTCATTCAATTCTTAATTCAAAAATTCAGAATTAATCAAAT
CTCGGATTCGAACCTACGACCAATCAGTTAACAGCCGACCGCTCTACCACTGAGCTACTGAGGAA
CAACGAGAGATTCGATCTCATCGAGTTCAACCCCCGTTCTCAACCCATGAACAATATGGGTCAGA
AGCCTCCTTCGTAACTCCCGTAACTTCTTCCTAATGGCTCCGTTCCATGCCTCATTTCATAGCTC
AAAGCGGCTCTATTTTCATTATATTCCATCTATATCCCAATTCCATTCATTTAATATCCCTTTGG
TATCGATAAGAGATGTCATTTCTCACTTCGTGACCTTCTATATAT
Right flanking sequence: Indices 129003 -- 129502
TAAATCATTATATAATAATCGAGAAATTGCAATAGAAAAGAAAAAGGGGAGGTTTGTTATGATGA
AGATAATAACAGCATGGTCGTTGTGGTCGGACTCTATTATGGATTTCTAACCACATTCTCAATGG
GGCCCTCTTATTTATTCCTTGGGTTATGAAAGAAGGAACCGGGAAGAAGATAGCAGCAACAACAG
GTTTTATTACGGGACAACTCATGATGTTTATATCAATCTATTATGCGCCTCTGCATCTAGCATTG
GGTAGACCTAATACAATAACTGTGCTAGTTCTACCCTATCTTTTGATTCTTTTTAATCTTAGAAG
TTTTCGTGGATGTTCTGCGTTTAAAAAGGTATTTATGTACGCATCTGGTATAATATCACAATTTG
ACATTTTCACGATACCGGACTGATCACATGTCCCTTTCGTTATTACAACCTTCTGTATTTATGTC
AAAGACCAGAATCCCCGCGCAAATGATTATTGGATCTCGGTTCTT
Found at i:133080 original size:13 final size:13
Alignment explanation
Indices: 133071--133120 Score: 50
Period size: 13 Copynumber: 3.8 Consensus size: 13
133061 GATATATTTT
*
133071 TGATATATATAAG
1 TGATATATATTAG
133084 TGATATATATT-G
1 TGATATATATTAG
133096 AT-ATATATATATAAG
1 -TGATATATAT-T-AG
133111 TGATATATAT
1 TGATATATAT
133121 ATAAGGTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
12 9 0.29
13 12 0.39
14 1 0.03
15 9 0.29
ACGTcount: A:0.44, C:0.00, G:0.12, T:0.44
Consensus pattern (13 bp):
TGATATATATTAG
Left flanking sequence: Indices 132571 -- 133070
TTATCGAATATCGAATTAAGTATGACTGTATGTGTGATAGCATCTACTATACCAGGAATATCAAT
GAACCCAATTCTTGCAATTGCTCAGGATACGCTTTTTTAGCTTCTAGGTCTATTTCTTAGTTCAA
GATCCCTCTTACTAACTGGAATAAAAGAATTAGGAGATCTGTTCCGCCCAAAATGGGAATGGGCT
GGGGTTATGAACTTATAATCATGGAATCGACTCGATCATCAGATTATAAGTGAATTTCATACCGG
ACCAGACCGGAATAGGGTTATGTACATTCTCATTATGAGAGGGTTCGAGCATATGTAAATGGATA
ATATGTTTACATATAGATCCCTACGTCGTGGCATTCTATTTAATTTAGGATTAGTAATCAGACCT
GCTTTTGACATATCTATCGTTATTTTTTTGGGGTACCATATTAACTTCTTTGGACTTCTATTGAA
TCGATAAATAGGTTTGATTGTACATCTCTTTGATTGATATATTTT
Right flanking sequence: Indices 133121 -- 133620
ATAAGGTATATATATATATCAAATCGAAGCAATTTGATGTCTGACTCGGGCCTATATGACCGATC
GATAGAAATATCCATCTTTTTCATATATTCCATATATTACACTATATAGATATCATATTCATGGA
TTCACTTTCAAGATGCCTTGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAG
AGCGTGGAGGTTCGAGTCCTCTTCAAGGCATAATATGGAGAATGCTCATTGAATGAGTAATTCAA
TAACAGATCTCGGATCTAATCGATATTGATATACCGAGTATCTGTTGATACGAAGTATTCCGTCG
ATCCCCACGATCCGAGTATGAGCTGTTGGAATTGGAATAACAGCGCTAAATCTTAGCGATCTTCT
CTATCTAATGAATGAGGAGTCCGTTTTGAAATCGTGCGCCCTGCACCCACCCCCCGAGTATATGA
TTCCTGTTGAATCATACAAGGGTAGATTGATAGAAACCTCTGATA
Found at i:133100 original size:23 final size:24
Alignment explanation
Indices: 133060--133104 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
133050 TCTCTTTGAT
*
133060 TGATATATTTTTGATATATATAAG
1 TGATATATTATTGATATATATAAG
133084 TGATATA-TATTGATATATATA
1 TGATATATTATTGATATATATA
133105 TATAAGTGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 13 0.65
24 7 0.35
ACGTcount: A:0.40, C:0.00, G:0.11, T:0.49
Consensus pattern (24 bp):
TGATATATTATTGATATATATAAG
Left flanking sequence: Indices 132560 -- 133059
AGAAGATCCACTTATCGAATATCGAATTAAGTATGACTGTATGTGTGATAGCATCTACTATACCA
GGAATATCAATGAACCCAATTCTTGCAATTGCTCAGGATACGCTTTTTTAGCTTCTAGGTCTATT
TCTTAGTTCAAGATCCCTCTTACTAACTGGAATAAAAGAATTAGGAGATCTGTTCCGCCCAAAAT
GGGAATGGGCTGGGGTTATGAACTTATAATCATGGAATCGACTCGATCATCAGATTATAAGTGAA
TTTCATACCGGACCAGACCGGAATAGGGTTATGTACATTCTCATTATGAGAGGGTTCGAGCATAT
GTAAATGGATAATATGTTTACATATAGATCCCTACGTCGTGGCATTCTATTTAATTTAGGATTAG
TAATCAGACCTGCTTTTGACATATCTATCGTTATTTTTTTGGGGTACCATATTAACTTCTTTGGA
CTTCTATTGAATCGATAAATAGGTTTGATTGTACATCTCTTTGAT
Right flanking sequence: Indices 133105 -- 133604
TATAAGTGATATATATATAAGGTATATATATATATCAAATCGAAGCAATTTGATGTCTGACTCGG
GCCTATATGACCGATCGATAGAAATATCCATCTTTTTCATATATTCCATATATTACACTATATAG
ATATCATATTCATGGATTCACTTTCAAGATGCCTTGATGGTGAAATGGTAGACACGCGAGACTCA
AAATCTCGTGCTAAAGAGCGTGGAGGTTCGAGTCCTCTTCAAGGCATAATATGGAGAATGCTCAT
TGAATGAGTAATTCAATAACAGATCTCGGATCTAATCGATATTGATATACCGAGTATCTGTTGAT
ACGAAGTATTCCGTCGATCCCCACGATCCGAGTATGAGCTGTTGGAATTGGAATAACAGCGCTAA
ATCTTAGCGATCTTCTCTATCTAATGAATGAGGAGTCCGTTTTGAAATCGTGCGCCCTGCACCCA
CCCCCCGAGTATATGATTCCTGTTGAATCATACAAGGGTAGATTG
Found at i:133116 original size:17 final size:17
Alignment explanation
Indices: 133094--133139 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
133084 TGATATATAT
133094 TGATATATATATATAAG
1 TGATATATATATATAAG
*
133111 TGATATATATATA-AGG
1 TGATATATATATATAAG
133127 T-ATATATATATAT
1 TGATATATATATAT
133140 CAAATCGAAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
15 11 0.41
16 3 0.11
17 13 0.48
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (17 bp):
TGATATATATATATAAG
Left flanking sequence: Indices 132594 -- 133093
GACTGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCAATTCTTGCAATTGCTC
AGGATACGCTTTTTTAGCTTCTAGGTCTATTTCTTAGTTCAAGATCCCTCTTACTAACTGGAATA
AAAGAATTAGGAGATCTGTTCCGCCCAAAATGGGAATGGGCTGGGGTTATGAACTTATAATCATG
GAATCGACTCGATCATCAGATTATAAGTGAATTTCATACCGGACCAGACCGGAATAGGGTTATGT
ACATTCTCATTATGAGAGGGTTCGAGCATATGTAAATGGATAATATGTTTACATATAGATCCCTA
CGTCGTGGCATTCTATTTAATTTAGGATTAGTAATCAGACCTGCTTTTGACATATCTATCGTTAT
TTTTTTGGGGTACCATATTAACTTCTTTGGACTTCTATTGAATCGATAAATAGGTTTGATTGTAC
ATCTCTTTGATTGATATATTTTTGATATATATAAGTGATATATAT
Right flanking sequence: Indices 133140 -- 133639
CAAATCGAAGCAATTTGATGTCTGACTCGGGCCTATATGACCGATCGATAGAAATATCCATCTTT
TTCATATATTCCATATATTACACTATATAGATATCATATTCATGGATTCACTTTCAAGATGCCTT
GATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAGAGCGTGGAGGTTCGAGTCC
TCTTCAAGGCATAATATGGAGAATGCTCATTGAATGAGTAATTCAATAACAGATCTCGGATCTAA
TCGATATTGATATACCGAGTATCTGTTGATACGAAGTATTCCGTCGATCCCCACGATCCGAGTAT
GAGCTGTTGGAATTGGAATAACAGCGCTAAATCTTAGCGATCTTCTCTATCTAATGAATGAGGAG
TCCGTTTTGAAATCGTGCGCCCTGCACCCACCCCCCGAGTATATGATTCCTGTTGAATCATACAA
GGGTAGATTGATAGAAACCTCTGATAAAATGCCCACCAGCGGATA
Found at i:133130 original size:13 final size:15
Alignment explanation
Indices: 133073--133138 Score: 86
Period size: 15 Copynumber: 4.6 Consensus size: 15
133063 TATATTTTTG
133073 ATATATATAAGTGAT
1 ATATATATAAGTGAT
*
133088 ATATAT-TGA-T-AT
1 ATATATATAAGTGAT
133100 ATATATATAAGTGAT
1 ATATATATAAGTGAT
133115 ATATATATAAG-GTAT
1 ATATATATAAGTG-AT
133130 ATATATATA
1 ATATATATA
133139 TCAAATCGAA
Statistics
Matches: 45, Mismatches: 2, Indels: 8
0.82 0.04 0.15
Matches are distributed among these distances:
12 8 0.18
13 3 0.07
14 4 0.09
15 30 0.67
ACGTcount: A:0.47, C:0.00, G:0.11, T:0.42
Consensus pattern (15 bp):
ATATATATAAGTGAT
Left flanking sequence: Indices 132573 -- 133072
ATCGAATATCGAATTAAGTATGACTGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGA
ACCCAATTCTTGCAATTGCTCAGGATACGCTTTTTTAGCTTCTAGGTCTATTTCTTAGTTCAAGA
TCCCTCTTACTAACTGGAATAAAAGAATTAGGAGATCTGTTCCGCCCAAAATGGGAATGGGCTGG
GGTTATGAACTTATAATCATGGAATCGACTCGATCATCAGATTATAAGTGAATTTCATACCGGAC
CAGACCGGAATAGGGTTATGTACATTCTCATTATGAGAGGGTTCGAGCATATGTAAATGGATAAT
ATGTTTACATATAGATCCCTACGTCGTGGCATTCTATTTAATTTAGGATTAGTAATCAGACCTGC
TTTTGACATATCTATCGTTATTTTTTTGGGGTACCATATTAACTTCTTTGGACTTCTATTGAATC
GATAAATAGGTTTGATTGTACATCTCTTTGATTGATATATTTTTG
Right flanking sequence: Indices 133139 -- 133638
TCAAATCGAAGCAATTTGATGTCTGACTCGGGCCTATATGACCGATCGATAGAAATATCCATCTT
TTTCATATATTCCATATATTACACTATATAGATATCATATTCATGGATTCACTTTCAAGATGCCT
TGATGGTGAAATGGTAGACACGCGAGACTCAAAATCTCGTGCTAAAGAGCGTGGAGGTTCGAGTC
CTCTTCAAGGCATAATATGGAGAATGCTCATTGAATGAGTAATTCAATAACAGATCTCGGATCTA
ATCGATATTGATATACCGAGTATCTGTTGATACGAAGTATTCCGTCGATCCCCACGATCCGAGTA
TGAGCTGTTGGAATTGGAATAACAGCGCTAAATCTTAGCGATCTTCTCTATCTAATGAATGAGGA
GTCCGTTTTGAAATCGTGCGCCCTGCACCCACCCCCCGAGTATATGATTCCTGTTGAATCATACA
AGGGTAGATTGATAGAAACCTCTGATAAAATGCCCACCAGCGGAT
Found at i:136928 original size:15 final size:15
Alignment explanation
Indices: 136908--136937 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
136898 AACGCTTCAC
*
136908 CTTCGACTATCGTCT
1 CTTCGACTAACGTCT
136923 CTTCGACTAACGTCT
1 CTTCGACTAACGTCT
136938 TACCTACCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.33, G:0.13, T:0.37
Consensus pattern (15 bp):
CTTCGACTAACGTCT
Left flanking sequence: Indices 136408 -- 136907
GGTATGGTATTGTCAGATCCGAACATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGT
TTATGGAATTATTATAGCAGGTCGGTCTAGTAATTAGGGGGGCGGCCGTTCGGTCGCCTATGATC
CCCGGACCTCTCAGTCAAAAATGGGTTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTG
TGGGCTTACAGGTCCCGGGCTCATAAACCAACCCTTTCTTTCATTCCTCCAGAGGTGATCGCTTC
ACGCGGTGGATCGAGAAGTGGAAGTCATAGAGATCTTTCCAGAGGTTTGGGGTCAGATCAGCTCA
GCTGGCCTATACATATATATAGCTGTCTTTGGAACGTTCTTCTTTGTCAACTCCCCGGTATGCTT
CTTCCTATACCTCGACGGGAGTCTCGTCCCGTGCCGTTGGTCGTCCTAAAACCTACTTCGTAGCC
TACCTAACGGTTCGGTTATCACCTCACTTTCGACTAACGCTTCAC
Right flanking sequence: Indices 136938 -- 137437
TACCTACCTTTCGGTACCCGTCGACTATCGTCTCCTCTACTTCGTATCCTTCTCCTAACGTCTTA
CCTACCGTCCGGTATCCTGAGACTAACTAAAATCTACCTAACGGTATCCTTCGACTAACTAAAAC
CTACTTCGTATCCTGAGACTAACTAAAATCTACCTAACGGTATCCTTCGACTATCGTCTCACCTA
CTTCGTAGCCTACTTGTAGCCTACTTTACTTATGAAAGAACATGAGAATGGGTTATGAAAAAAGG
AAAAGGGGACGAACCTGACCGGTCATTCATTATAGTATAGTATCAGTCGAAGTCAGCGGCGGCCA
GTCTATATAGAACTACATTCGTAGCCTTTATTTTTAGTATATATAGTAAGTAGGCGAGCGAAGAT
ATGGCAAACAAAGAGCTTAGGCGGAGAGATAAGAGAGTGCCGGTGCGGGGAATTTCTTATGCAAT
GCACGGGCCTATATGTGAAAACTTCCCTTCGCACTAAGGTCACCT
Found at i:137120 original size:32 final size:32
Alignment explanation
Indices: 137012--137113 Score: 147
Period size: 32 Copynumber: 3.3 Consensus size: 32
137002 ACCTACCGTC
137012 CGGTATCCTGAGACTAACTAAAATCTACCTAA
1 CGGTATCCTGAGACTAACTAAAATCTACCTAA
** * *
137044 CGGTATCCTTCGACTAACTAAAACCTA-CT-T
1 CGGTATCCTGAGACTAACTAAAATCTACCTAA
137074 C-GTATCCTGAGACTAACTAAAATCTACCTAA
1 CGGTATCCTGAGACTAACTAAAATCTACCTAA
137105 CGGTATCCT
1 CGGTATCCT
137114 TCGACTATCG
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
29 22 0.37
30 3 0.05
31 3 0.05
32 31 0.53
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.27
Consensus pattern (32 bp):
CGGTATCCTGAGACTAACTAAAATCTACCTAA
Left flanking sequence: Indices 136512 -- 137011
GGGCGGCCGTTCGGTCGCCTATGATCCCCGGACCTCTCAGTCAAAAATGGGTTTGTGCCGCAGGT
GTTGAACGATCTACTCTACACAGGTGTGGGCTTACAGGTCCCGGGCTCATAAACCAACCCTTTCT
TTCATTCCTCCAGAGGTGATCGCTTCACGCGGTGGATCGAGAAGTGGAAGTCATAGAGATCTTTC
CAGAGGTTTGGGGTCAGATCAGCTCAGCTGGCCTATACATATATATAGCTGTCTTTGGAACGTTC
TTCTTTGTCAACTCCCCGGTATGCTTCTTCCTATACCTCGACGGGAGTCTCGTCCCGTGCCGTTG
GTCGTCCTAAAACCTACTTCGTAGCCTACCTAACGGTTCGGTTATCACCTCACTTTCGACTAACG
CTTCACCTTCGACTATCGTCTCTTCGACTAACGTCTTACCTACCTTTCGGTACCCGTCGACTATC
GTCTCCTCTACTTCGTATCCTTCTCCTAACGTCTTACCTACCGTC
Right flanking sequence: Indices 137114 -- 137613
TCGACTATCGTCTCACCTACTTCGTAGCCTACTTGTAGCCTACTTTACTTATGAAAGAACATGAG
AATGGGTTATGAAAAAAGGAAAAGGGGACGAACCTGACCGGTCATTCATTATAGTATAGTATCAG
TCGAAGTCAGCGGCGGCCAGTCTATATAGAACTACATTCGTAGCCTTTATTTTTAGTATATATAG
TAAGTAGGCGAGCGAAGATATGGCAAACAAAGAGCTTAGGCGGAGAGATAAGAGAGTGCCGGTGC
GGGGAATTTCTTATGCAATGCACGGGCCTATATGTGAAAACTTCCCTTCGCACTAAGGTCACCTC
CGCTCGACGTTAGGAGAGTCAAGGTTTTTCAGCTGTTCGCTTACCCTATCATTATTCCATTCTTT
GGATTCCGGTCCCCACCGCTTCGCACCCTACCAAGATTCAAAACTGCTGGGTCTCGGGTCTATAG
AACAAGCGCGCCCAGCAATAAAACAAACGGATGCACGTGCTAACG
Found at i:137153 original size:11 final size:12
Alignment explanation
Indices: 137129--137158 Score: 53
Period size: 11 Copynumber: 2.6 Consensus size: 12
137119 TATCGTCTCA
137129 CCTACTTCGTAG
1 CCTACTTCGTAG
137141 CCTACTT-GTAG
1 CCTACTTCGTAG
137152 CCTACTT
1 CCTACTT
137159 TACTTATGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 11 0.61
12 7 0.39
ACGTcount: A:0.17, C:0.33, G:0.13, T:0.37
Consensus pattern (12 bp):
CCTACTTCGTAG
Left flanking sequence: Indices 136629 -- 137128
ACCAACCCTTTCTTTCATTCCTCCAGAGGTGATCGCTTCACGCGGTGGATCGAGAAGTGGAAGTC
ATAGAGATCTTTCCAGAGGTTTGGGGTCAGATCAGCTCAGCTGGCCTATACATATATATAGCTGT
CTTTGGAACGTTCTTCTTTGTCAACTCCCCGGTATGCTTCTTCCTATACCTCGACGGGAGTCTCG
TCCCGTGCCGTTGGTCGTCCTAAAACCTACTTCGTAGCCTACCTAACGGTTCGGTTATCACCTCA
CTTTCGACTAACGCTTCACCTTCGACTATCGTCTCTTCGACTAACGTCTTACCTACCTTTCGGTA
CCCGTCGACTATCGTCTCCTCTACTTCGTATCCTTCTCCTAACGTCTTACCTACCGTCCGGTATC
CTGAGACTAACTAAAATCTACCTAACGGTATCCTTCGACTAACTAAAACCTACTTCGTATCCTGA
GACTAACTAAAATCTACCTAACGGTATCCTTCGACTATCGTCTCA
Right flanking sequence: Indices 137159 -- 137658
TACTTATGAAAGAACATGAGAATGGGTTATGAAAAAAGGAAAAGGGGACGAACCTGACCGGTCAT
TCATTATAGTATAGTATCAGTCGAAGTCAGCGGCGGCCAGTCTATATAGAACTACATTCGTAGCC
TTTATTTTTAGTATATATAGTAAGTAGGCGAGCGAAGATATGGCAAACAAAGAGCTTAGGCGGAG
AGATAAGAGAGTGCCGGTGCGGGGAATTTCTTATGCAATGCACGGGCCTATATGTGAAAACTTCC
CTTCGCACTAAGGTCACCTCCGCTCGACGTTAGGAGAGTCAAGGTTTTTCAGCTGTTCGCTTACC
CTATCATTATTCCATTCTTTGGATTCCGGTCCCCACCGCTTCGCACCCTACCAAGATTCAAAACT
GCTGGGTCTCGGGTCTATAGAACAAGCGCGCCCAGCAATAAAACAAACGGATGCACGTGCTAACG
CGCAAGCGCTAGAAAGCAATCAAACTAAGTGCTAACGCATAACTT
Found at i:138683 original size:36 final size:36
Alignment explanation
Indices: 138636--138708 Score: 130
Period size: 36 Copynumber: 2.0 Consensus size: 36
138626 GTTCGACTGT
138636 AAGACGGACGACCAAAGGCTCGACTG-TACGGAGAGG
1 AAGACGGACGACCAAAGGCTCGACTGATA-GGAGAGG
138672 AAGACGGACGACCAAAGGCTCGACTGATAGGAGAGG
1 AAGACGGACGACCAAAGGCTCGACTGATAGGAGAGG
138708 A
1 A
138709 GATAGTCGCA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
36 34 0.94
37 2 0.06
ACGTcount: A:0.36, C:0.21, G:0.36, T:0.08
Consensus pattern (36 bp):
AAGACGGACGACCAAAGGCTCGACTGATAGGAGAGG
Left flanking sequence: Indices 138136 -- 138635
GGGGCGGAACGACCTCTTGATCTACTTACTGCAGCCCAGGACGGGCGTCGTCGTCTAGGCGTTCC
CTGTTGCTCTGATCTCCCCTACGCCTAGGACGTTGTCTGGGCCAAGAGCCATAGTTTGTTGTTGT
TGGTGGTTTTTTATCATTGTTGATACCGGCAAGACCCAGCCAGATGATGTCTGATGGTTGGTAGT
GAGAGGACTCTTAGTACCCAAAAGGGCGCTGGTGAAAAAAACAATCATTTGATTTAGTTTCTTGC
TCTCCCTTAGCAGCGGGAAAGGAGTCTATCTATCTGCCGGGATTTGGTAGATTTCCCCCAACGCA
ATCCACAAACGGAAATTCCACGAATCCCGTCGGTGGATAAGTCCGACGACTCAGCAGCTGTGCGG
AATTGACTTTCTCGTCCGGTGGATCTGATCTATATTCCGGGGGCAATACATACCAAAAGGTTCGA
AGAAGGAACGCGTAGGATACCGTGAGGTAGGTGAGGTTCGACTGT
Right flanking sequence: Indices 138709 -- 139208
GATAGTCGCACGAGGGACTAGACGGTACTCTTCGGAGAGTTTAACCGGGACGAGACGATAGTCGA
CTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACGACCGGGACGAGACGATAGTCGACTT
TAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACGACCGGGACGAGACGATAGTCGACTTTAG
GGACGAGACGATAGTCTCAGGAGAGTTTAGGACGACCGGGACGAGACGATAGTCGAGGTATAGGA
AGAAGGATAGGAAGAAGGAGGTACTGGCCGAGAAAAAAGCGGTTTGTTCATATCGAACTTTAAGT
GCCATGCTATTATTACTTATTATTTTGATATGGCGAATAAAGTAAAGCGTTTAACTGATATTAAA
ATTCCGGAGATCGGTTCGGATCGTCGACCGGGTCCGAGCTTCCCAAGCTCTATGCTGTTTGGGAA
CTCCGCAAGGATCTTACCACCTTCTTGATTGACTATATTTGAGTC
Found at i:138978 original size:12 final size:12
Alignment explanation
Indices: 138963--138987 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
138953 TAGTCGAGGT
138963 ATAGGAAGAAGG
1 ATAGGAAGAAGG
138975 ATAGGAAGAAGG
1 ATAGGAAGAAGG
138987 A
1 A
138988 GGTACTGGCC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.52, C:0.00, G:0.40, T:0.08
Consensus pattern (12 bp):
ATAGGAAGAAGG
Left flanking sequence: Indices 138463 -- 138962
CCACAAACGGAAATTCCACGAATCCCGTCGGTGGATAAGTCCGACGACTCAGCAGCTGTGCGGAA
TTGACTTTCTCGTCCGGTGGATCTGATCTATATTCCGGGGGCAATACATACCAAAAGGTTCGAAG
AAGGAACGCGTAGGATACCGTGAGGTAGGTGAGGTTCGACTGTAAGACGGACGACCAAAGGCTCG
ACTGTACGGAGAGGAAGACGGACGACCAAAGGCTCGACTGATAGGAGAGGAGATAGTCGCACGAG
GGACTAGACGGTACTCTTCGGAGAGTTTAACCGGGACGAGACGATAGTCGACTTTAGGGACGAGA
CGATAGTCTCAGGAGAGTTTAGGACGACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGA
TAGTCTCAGGAGAGTTTAGGACGACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAG
TCTCAGGAGAGTTTAGGACGACCGGGACGAGACGATAGTCGAGGT
Right flanking sequence: Indices 138988 -- 139487
GGTACTGGCCGAGAAAAAAGCGGTTTGTTCATATCGAACTTTAAGTGCCATGCTATTATTACTTA
TTATTTTGATATGGCGAATAAAGTAAAGCGTTTAACTGATATTAAAATTCCGGAGATCGGTTCGG
ATCGTCGACCGGGTCCGAGCTTCCCAAGCTCTATGCTGTTTGGGAACTCCGCAAGGATCTTACCA
CCTTCTTGATTGACTATATTTGAGTCTTTAGAGTACTTTGGGATTATATTCCGCGCCGAGGATTT
GTGCTTGTGGGCTAGGGTGAAGAGGGCAGACCAGCGGATCTGGTGGTCAACAATCGTTCGGACTT
GGTAAAGGTTGTCGCAGCACCTGTAGTAGGACAGAGGACTGATAGCGATGCCCGCGGACCAATTT
ACGATGTCTCCGTCGCTGACGTTCGTCAAGCAGGCCACGTGAATTGGCCAGGGTCTTCTTCGGCT
AATGATACCTCGATCTCGGAGCCTTCGGAGTATCTTTTTCACTGG
Found at i:138988 original size:62 final size:62
Alignment explanation
Indices: 138752--138959 Score: 416
Period size: 62 Copynumber: 3.4 Consensus size: 62
138742 GGAGAGTTTA
138752 ACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACG
1 ACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACG
138814 ACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACG
1 ACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACG
138876 ACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACG
1 ACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACG
138938 ACCGGGACGAGACGATAGTCGA
1 ACCGGGACGAGACGATAGTCGA
138960 GGTATAGGAA
Statistics
Matches: 146, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 146 1.00
ACGTcount: A:0.29, C:0.18, G:0.36, T:0.17
Consensus pattern (62 bp):
ACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACG
Left flanking sequence: Indices 138252 -- 138751
TAGTTTGTTGTTGTTGGTGGTTTTTTATCATTGTTGATACCGGCAAGACCCAGCCAGATGATGTC
TGATGGTTGGTAGTGAGAGGACTCTTAGTACCCAAAAGGGCGCTGGTGAAAAAAACAATCATTTG
ATTTAGTTTCTTGCTCTCCCTTAGCAGCGGGAAAGGAGTCTATCTATCTGCCGGGATTTGGTAGA
TTTCCCCCAACGCAATCCACAAACGGAAATTCCACGAATCCCGTCGGTGGATAAGTCCGACGACT
CAGCAGCTGTGCGGAATTGACTTTCTCGTCCGGTGGATCTGATCTATATTCCGGGGGCAATACAT
ACCAAAAGGTTCGAAGAAGGAACGCGTAGGATACCGTGAGGTAGGTGAGGTTCGACTGTAAGACG
GACGACCAAAGGCTCGACTGTACGGAGAGGAAGACGGACGACCAAAGGCTCGACTGATAGGAGAG
GAGATAGTCGCACGAGGGACTAGACGGTACTCTTCGGAGAGTTTA
Right flanking sequence: Indices 138960 -- 139459
GGTATAGGAAGAAGGATAGGAAGAAGGAGGTACTGGCCGAGAAAAAAGCGGTTTGTTCATATCGA
ACTTTAAGTGCCATGCTATTATTACTTATTATTTTGATATGGCGAATAAAGTAAAGCGTTTAACT
GATATTAAAATTCCGGAGATCGGTTCGGATCGTCGACCGGGTCCGAGCTTCCCAAGCTCTATGCT
GTTTGGGAACTCCGCAAGGATCTTACCACCTTCTTGATTGACTATATTTGAGTCTTTAGAGTACT
TTGGGATTATATTCCGCGCCGAGGATTTGTGCTTGTGGGCTAGGGTGAAGAGGGCAGACCAGCGG
ATCTGGTGGTCAACAATCGTTCGGACTTGGTAAAGGTTGTCGCAGCACCTGTAGTAGGACAGAGG
ACTGATAGCGATGCCCGCGGACCAATTTACGATGTCTCCGTCGCTGACGTTCGTCAAGCAGGCCA
CGTGAATTGGCCAGGGTCTTCTTCGGCTAATGATACCTCGATCTC
Found at i:138988 original size:124 final size:124
Alignment explanation
Indices: 138752--138988 Score: 370
Period size: 124 Copynumber: 1.9 Consensus size: 124
138742 GGAGAGTTTA
138752 ACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACGACC
1 ACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACGACC
* * ****
138817 GGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACG
66 GGGACGAGACGATAGTCGACTATAGGGAAGAGACGATAGAAGAAGGAGAGTTTAGGACG
138876 ACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACGACC
1 ACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACGACC
* *
138941 GGGACGAGACGATAGTCGAGGTATA-GGAAGA-AGGATAGGAAGAAGGAG
66 GGGACGAGACGATAGTCGA-CTATAGGGAAGAGACGATA-GAAGAAGGAG
138989 GTACTGGCCG
Statistics
Matches: 103, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
123 5 0.05
124 95 0.92
125 3 0.03
ACGTcount: A:0.31, C:0.16, G:0.37, T:0.16
Consensus pattern (124 bp):
ACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACGACC
GGGACGAGACGATAGTCGACTATAGGGAAGAGACGATAGAAGAAGGAGAGTTTAGGACG
Left flanking sequence: Indices 138252 -- 138751
TAGTTTGTTGTTGTTGGTGGTTTTTTATCATTGTTGATACCGGCAAGACCCAGCCAGATGATGTC
TGATGGTTGGTAGTGAGAGGACTCTTAGTACCCAAAAGGGCGCTGGTGAAAAAAACAATCATTTG
ATTTAGTTTCTTGCTCTCCCTTAGCAGCGGGAAAGGAGTCTATCTATCTGCCGGGATTTGGTAGA
TTTCCCCCAACGCAATCCACAAACGGAAATTCCACGAATCCCGTCGGTGGATAAGTCCGACGACT
CAGCAGCTGTGCGGAATTGACTTTCTCGTCCGGTGGATCTGATCTATATTCCGGGGGCAATACAT
ACCAAAAGGTTCGAAGAAGGAACGCGTAGGATACCGTGAGGTAGGTGAGGTTCGACTGTAAGACG
GACGACCAAAGGCTCGACTGTACGGAGAGGAAGACGGACGACCAAAGGCTCGACTGATAGGAGAG
GAGATAGTCGCACGAGGGACTAGACGGTACTCTTCGGAGAGTTTA
Right flanking sequence: Indices 138989 -- 139488
GTACTGGCCGAGAAAAAAGCGGTTTGTTCATATCGAACTTTAAGTGCCATGCTATTATTACTTAT
TATTTTGATATGGCGAATAAAGTAAAGCGTTTAACTGATATTAAAATTCCGGAGATCGGTTCGGA
TCGTCGACCGGGTCCGAGCTTCCCAAGCTCTATGCTGTTTGGGAACTCCGCAAGGATCTTACCAC
CTTCTTGATTGACTATATTTGAGTCTTTAGAGTACTTTGGGATTATATTCCGCGCCGAGGATTTG
TGCTTGTGGGCTAGGGTGAAGAGGGCAGACCAGCGGATCTGGTGGTCAACAATCGTTCGGACTTG
GTAAAGGTTGTCGCAGCACCTGTAGTAGGACAGAGGACTGATAGCGATGCCCGCGGACCAATTTA
CGATGTCTCCGTCGCTGACGTTCGTCAAGCAGGCCACGTGAATTGGCCAGGGTCTTCTTCGGCTA
ATGATACCTCGATCTCGGAGCCTTCGGAGTATCTTTTTCACTGGT
Found at i:139867 original size:33 final size:33
Alignment explanation
Indices: 139830--139938 Score: 209
Period size: 33 Copynumber: 3.3 Consensus size: 33
139820 GATAGTCGAA
139830 GAGACGATAGTCGTTCCGGGGATAGCCGACGGT
1 GAGACGATAGTCGTTCCGGGGATAGCCGACGGT
*
139863 GAGACGATAGTCGTTCCGGGGATAGCCAACGGT
1 GAGACGATAGTCGTTCCGGGGATAGCCGACGGT
139896 GAGACGATAGTCGTTCCGGGGATAGCCGACGGT
1 GAGACGATAGTCGTTCCGGGGATAGCCGACGGT
139929 GAGACGATAG
1 GAGACGATAG
139939 GAGAAGGCTA
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 74 1.00
ACGTcount: A:0.24, C:0.20, G:0.39, T:0.17
Consensus pattern (33 bp):
GAGACGATAGTCGTTCCGGGGATAGCCGACGGT
Left flanking sequence: Indices 139330 -- 139829
CACCTGTAGTAGGACAGAGGACTGATAGCGATGCCCGCGGACCAATTTACGATGTCTCCGTCGCT
GACGTTCGTCAAGCAGGCCACGTGAATTGGCCAGGGTCTTCTTCGGCTAATGATACCTCGATCTC
GGAGCCTTCGGAGTATCTTTTTCACTGGTGCCTCTATCTGTATGGGGAATTCGCTGCTGAAAGAT
CCCGCCCAGTGTCTACAGTTACTAAATCCGGTTCCGGCCCCCGCCGCCCGACCAGACATAAACAA
GCCCGCGGGAGTATACTCGGACTCGCCAGTCTCTGTAGAAGAAAACTTCCGGACACTCCGTGAGA
CTGCCTGATCCTCTGCTCCGACCTGAGGCACGTTTCCCTGCAAGAACTCGATCTCCCTTGGACTA
CTACGACTACTAAGGATGTGGGTGTTCATCCCCCAGGATACCGATAGGTAGGTGAGGCTCGACTG
TAAGGCTACGAAGTAGGAATTGTGGTAGAGGAGACGATAGTCGAA
Right flanking sequence: Indices 139939 -- 140438
GAGAAGGCTACCGTTAGGTAGGCTACGAAGTAGGTGAGACGATAGTCGAAGGATACCGGACGGTA
GGTGAGGTGATAACCGAAGGAGTTGTGGTGACGATAGTCGTAAGAGTTGTGGTAGTTGTGGTAGT
TGCGGTAGTTGTGGTAGACCTTTAGGTCGGTGAGCACGTTAGGAGAAGGATACGAAGTAGAGGAG
ACGATAGTCGACGGGTACCGAAAGGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGAGTTGT
GGTAGACGACCAGCTAACGGGATACCGTGAGGTAGTTGAGACGATAGTCGAAGGGCGAGACGATA
GTCGAAGGTGACCGAGGCTAGGAGGGAACGAGACGCTAGTCGAAGAACTAGGTACCTTTGGAGGT
GAGACGCTAGTCGAATGAGACGAAAACTTGGGGATTGTTCCAAGAGTCTCTGAAAGTCGAACCGC
GTCTAGTGGACTCCCTGTTCTATAGAGACTGGAGAGACTGGTCAT
Found at i:140062 original size:9 final size:9
Alignment explanation
Indices: 140048--140085 Score: 67
Period size: 9 Copynumber: 4.2 Consensus size: 9
140038 TAGTCGTAAG
140048 AGTTGTGGT
1 AGTTGTGGT
140057 AGTTGTGGT
1 AGTTGTGGT
*
140066 AGTTGCGGT
1 AGTTGTGGT
140075 AGTTGTGGT
1 AGTTGTGGT
140084 AG
1 AG
140086 ACCTTTAGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 27 1.00
ACGTcount: A:0.13, C:0.03, G:0.45, T:0.39
Consensus pattern (9 bp):
AGTTGTGGT
Left flanking sequence: Indices 139548 -- 140047
AAATCCGGTTCCGGCCCCCGCCGCCCGACCAGACATAAACAAGCCCGCGGGAGTATACTCGGACT
CGCCAGTCTCTGTAGAAGAAAACTTCCGGACACTCCGTGAGACTGCCTGATCCTCTGCTCCGACC
TGAGGCACGTTTCCCTGCAAGAACTCGATCTCCCTTGGACTACTACGACTACTAAGGATGTGGGT
GTTCATCCCCCAGGATACCGATAGGTAGGTGAGGCTCGACTGTAAGGCTACGAAGTAGGAATTGT
GGTAGAGGAGACGATAGTCGAAGAGACGATAGTCGTTCCGGGGATAGCCGACGGTGAGACGATAG
TCGTTCCGGGGATAGCCAACGGTGAGACGATAGTCGTTCCGGGGATAGCCGACGGTGAGACGATA
GGAGAAGGCTACCGTTAGGTAGGCTACGAAGTAGGTGAGACGATAGTCGAAGGATACCGGACGGT
AGGTGAGGTGATAACCGAAGGAGTTGTGGTGACGATAGTCGTAAG
Right flanking sequence: Indices 140086 -- 140585
ACCTTTAGGTCGGTGAGCACGTTAGGAGAAGGATACGAAGTAGAGGAGACGATAGTCGACGGGTA
CCGAAAGGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGAGTTGTGGTAGACGACCAGCTAA
CGGGATACCGTGAGGTAGTTGAGACGATAGTCGAAGGGCGAGACGATAGTCGAAGGTGACCGAGG
CTAGGAGGGAACGAGACGCTAGTCGAAGAACTAGGTACCTTTGGAGGTGAGACGCTAGTCGAATG
AGACGAAAACTTGGGGATTGTTCCAAGAGTCTCTGAAAGTCGAACCGCGTCTAGTGGACTCCCTG
TTCTATAGAGACTGGAGAGACTGGTCATCCCCTTCGTCAGCTCTTTGATCGGGATACCCTCACCT
AGGTACCCCCACTTTCCATGAATAGCGGAGCGCAGGTGGCAAGCTGTTATATGTACCCGGTGCTT
TACCCGTAGACGCTTCTCCAGCTCTCGCAAGAAGGGGATGGGAGT
Found at i:144312 original size:14 final size:14
Alignment explanation
Indices: 144293--144321 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
144283 AAGTCATTTA
144293 TGGATATGTGCCAG
1 TGGATATGTGCCAG
144307 TGGATATGTGCCAG
1 TGGATATGTGCCAG
144321 T
1 T
144322 ATAGTGTCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.21, C:0.14, G:0.34, T:0.31
Consensus pattern (14 bp):
TGGATATGTGCCAG
Left flanking sequence: Indices 143793 -- 144292
ATGTTATGGTAGGAGTGCCACCCATGGTGATCTGGTTGAATTGGGGGAAGCCGTAGGTATTATTG
CAGGTCAATCAATTGGAGAACCGGGAACTCAACTAACATTAATAACTTTTCATACTGGTGGAGTA
TTCACGGGCGGTACTGCCGAACATGTACGAGCTCCTTCTAATGGCAAAATAACATTCAATGAAGA
TTTGGTTCATCCCACGCGTACTCGTCATGGACATCCTGCTTTTCTATGTTCTATAGATCTGCACG
TAACTATTCAAAGTCAGGATATTTTACATAATGTAAATACCAAAAAGTTGGATTTTAATTCAAAA
TGATCAATATGTAGAATCAGAACAAGTGATTGCTGAGATTCGTGCCGGAGCATCCACTTTGTGGG
TTCGAAAACATATTTATTCTGAATCAGAAGGAACTGGGAGTATTGATGTTTATCACGCGCCTGAA
TATACCTATGGTAATGTTCATCTATTACCAAAAACAAGTCATTTA
Right flanking sequence: Indices 144322 -- 144821
ATAGTGTCTTTTTCCCGGAACAAGGATCAAGATCAAATCAATGTTCATTCTTTTTCTGTTGAAGG
GAAATATAGTATAGCTCTGATTTCTCAACGAGGGCAAAAATTGTTTAGTTCGTTGGTAAAAAATA
AAAGAATTACAAATTTAGAGTCTCCACCTATAAACATAAATGCAATTTCATTTAAGAATTTAAGA
CGAAAACACAAAATTACCGGATTTCTTATACAGAAAATCTATTATTTTATATGAAATAAAGTAAG
GAATATGATAGAATTTACCATAAATAAGTATAGATTCTTTCTATTAAATTCAAATTTTAGAAATA
CGTATTGGACATTGAATTAGATAATAATTCTAAATATTATAATTAGAATAAAGATTTCGCTTTTT
TGATTTTTATATTGAAAATAGCATGGTTATAAATCATTATTATAGTATAATTATTCAAACTATTA
TAATAAGAAGAATAAAAACAAAATTTTTAATGGGTTTGTTTTATT
Found at i:148847 original size:62 final size:62
Alignment explanation
Indices: 148750--148890 Score: 282
Period size: 62 Copynumber: 2.3 Consensus size: 62
148740 TATCCTGAGA
148750 CTAACTAAAATCTACCTAACGGTTCGGTTATCACCTCACTTTCGACTAACTAAAACCTTCTC
1 CTAACTAAAATCTACCTAACGGTTCGGTTATCACCTCACTTTCGACTAACTAAAACCTTCTC
148812 CTAACTAAAATCTACCTAACGGTTCGGTTATCACCTCACTTTCGACTAACTAAAACCTTCTC
1 CTAACTAAAATCTACCTAACGGTTCGGTTATCACCTCACTTTCGACTAACTAAAACCTTCTC
148874 CTAACTAAAATCTACCT
1 CTAACTAAAATCTACCT
148891 TTCTCCTTCG
Statistics
Matches: 79, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 79 1.00
ACGTcount: A:0.32, C:0.30, G:0.07, T:0.30
Consensus pattern (62 bp):
CTAACTAAAATCTACCTAACGGTTCGGTTATCACCTCACTTTCGACTAACTAAAACCTTCTC
Left flanking sequence: Indices 148250 -- 148749
TTTCTTCCCACAGTGGGTAACAATATCTTTAATCCATCCCATACGATCAACACCCCATATACAGC
CTATAATTAACACACATTTACCTGCCCCTAATTAATCACCCATACCCCCACCCGACATTTTCCCA
ACTTTTGACTAATCAGAAAAAAAACCAGAATTCTAACTTGAAATGAGGGTATTAACCTATAATCT
AACTACCCTTTTACTCAATCTACTATATCTATTGTCATCACCCATAGTCGGGGGATGTTAGATTC
TTGACCATGTAGCTATAGAAATATGAAACACAAAATAGGATAATCAAAATATAGAACACACATAG
GGCAATAGTACTACAAACCATCATCTTCCTCATCGTCCTCATCCGTATAAACGTCCTCACTTTCA
CCCTCCTTCCCCAAATTAATTATACCTTCGCTATCGGAGAACTCTTCGTGCGACTATCGTCTTCC
TCTATCTTTACTACTCTTCCTATACCTCTACTTCGTATCCTGAGA
Right flanking sequence: Indices 148891 -- 149390
TTCTCCTTCGCGTCTCACCTTCGGTTATCACCTCACCTATGAAGACTCGCTTTCGCTACGGCGGA
GGTGGGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGT
CAGAAATCACACTTTCTCCTCCCACTGCTTGGGAGCTCACGGTTTCATGTTCTATTTCACTCCCC
GATGGGGGTTCTTTTCACCTCGGTACTACTTCGCTATCGGTCACCCAGGTTCGGGTCCATGTACA
GCACTCCACTGTTTCGCCTAGCAGCACGACCAGCTAACGGGGTTTGTTTTAGGACGACCAACGGC
ACGGGACGAGACTCCCGTCGAGGTATAGGAAGCACGGGGTAATTGAACCTACGAATTTGCCAATT
ATGAGTTGGTTTAACCATTCAGCCATGGATGCTTAATGGGTATCCTCGTGTATTGTATCGTGATT
CAATTTACATTGAAATGGAATCTTTAGCAGGAAGCAACGAAACGA
Found at i:155537 original size:16 final size:15
Alignment explanation
Indices: 155507--155543 Score: 56
Period size: 16 Copynumber: 2.4 Consensus size: 15
155497 TAATGAGGTA
*
155507 TAATTATATATTCAT
1 TAATTATAAATTCAT
155522 TAATTATAAAATTCAT
1 TAATTAT-AAATTCAT
155538 TAATTA
1 TAATTA
155544 GAAAGTTACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (15 bp):
TAATTATAAATTCAT
Left flanking sequence: Indices 155007 -- 155506
AACATTATTATTTGGTAAGACGACTCCATTTCTTGGGGGTGGGCACAGTATAAAAGGTCTTTTAG
AAGTACATACTCCCCTGGTCTTTCTCTTACTGCCACTATACATTACTAACATTAACGCGAGTCTC
GAGTAACTGGCCAAGCTGCTAAAGTGGCCAAAGTGGGTGAAAGCCTGTCATTTTTAAACAAACTC
TAGGCTCGACTCAATAATGGAAAATCACTAATTTCTTAATTGAATAAAGCAGGCCCTTTTAACTC
AGTGGTAGAGTAACGCCATGGTAAGGCGTAAGTCATCGGTTCAAATCCGATAAGGGGCTTTTTCC
ATGAAACTCCAGTCTTAGCCCGTATTTTTCCCTTTTCGGGAGAGTTTTGTTTATTGCTATTTTTT
ATCTATTTATTTATAACCGCTTTGTCTATTTATTTGTAATAAAAAACAGTTAAAAAAAGAAAAGG
GTAAACGTTAACGTTATTGTAATATGTATATATTCTAATGAGGTA
Right flanking sequence: Indices 155544 -- 156043
GAAAGTTACAAATTGATTAATGAATAACCAGACTTATTATGAGTGGTCTACCCTATAATATAACG
GTTATGCTCGATTTCTCTTTATAAGACCAATACTTCCTTCCGCCCTGTAACTACAGTACCCCTCT
CCTTATCAGTCGATCTCCCTGCCGGGCCCTCTCCTTATCAGTCGATCTCCCTGCCGGGCCCTCTC
CTTATCAGTCGATCTCCCTGCCGGGCCCTCTCCTTATCAGTCGATCTCCCTGCCGGGCCCTCTCC
TTATCAGTCGATCTCCCTGCCGGGCCCTCTCCTGCTAAGAGCGCATTGAATGACCTTGTGGAACG
TGAAATGCCTGTCTTGGTGTCGACCGAAACATGCCACTGAAAGACTCTTCTGTCCGGCGGTTACT
TGAGCTCCCCGAGTGCAGACTTCTACAATAGCTTTCGGCTCTTAACAACCCGTGACAGCAACCAT
TTCAACATCAAGAGCCCGGAGGATTGCACTGTGCTCGGTCTTGAA
Found at i:155704 original size:32 final size:32
Alignment explanation
Indices: 155668--155836 Score: 338
Period size: 32 Copynumber: 5.3 Consensus size: 32
155658 ACTACAGTAC
155668 CCCTCTCCTTATCAGTCGATCTCCCTGCCGGG
1 CCCTCTCCTTATCAGTCGATCTCCCTGCCGGG
155700 CCCTCTCCTTATCAGTCGATCTCCCTGCCGGG
1 CCCTCTCCTTATCAGTCGATCTCCCTGCCGGG
155732 CCCTCTCCTTATCAGTCGATCTCCCTGCCGGG
1 CCCTCTCCTTATCAGTCGATCTCCCTGCCGGG
155764 CCCTCTCCTTATCAGTCGATCTCCCTGCCGGG
1 CCCTCTCCTTATCAGTCGATCTCCCTGCCGGG
155796 CCCTCTCCTTATCAGTCGATCTCCCTGCCGGG
1 CCCTCTCCTTATCAGTCGATCTCCCTGCCGGG
155828 CCCTCTCCT
1 CCCTCTCCT
155837 GCTAAGAGCG
Statistics
Matches: 137, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 137 1.00
ACGTcount: A:0.09, C:0.45, G:0.18, T:0.28
Consensus pattern (32 bp):
CCCTCTCCTTATCAGTCGATCTCCCTGCCGGG
Left flanking sequence: Indices 155168 -- 155667
AGTGGGTGAAAGCCTGTCATTTTTAAACAAACTCTAGGCTCGACTCAATAATGGAAAATCACTAA
TTTCTTAATTGAATAAAGCAGGCCCTTTTAACTCAGTGGTAGAGTAACGCCATGGTAAGGCGTAA
GTCATCGGTTCAAATCCGATAAGGGGCTTTTTCCATGAAACTCCAGTCTTAGCCCGTATTTTTCC
CTTTTCGGGAGAGTTTTGTTTATTGCTATTTTTTATCTATTTATTTATAACCGCTTTGTCTATTT
ATTTGTAATAAAAAACAGTTAAAAAAAGAAAAGGGTAAACGTTAACGTTATTGTAATATGTATAT
ATTCTAATGAGGTATAATTATATATTCATTAATTATAAAATTCATTAATTAGAAAGTTACAAATT
GATTAATGAATAACCAGACTTATTATGAGTGGTCTACCCTATAATATAACGGTTATGCTCGATTT
CTCTTTATAAGACCAATACTTCCTTCCGCCCTGTAACTACAGTAC
Right flanking sequence: Indices 155837 -- 156336
GCTAAGAGCGCATTGAATGACCTTGTGGAACGTGAAATGCCTGTCTTGGTGTCGACCGAAACATG
CCACTGAAAGACTCTTCTGTCCGGCGGTTACTTGAGCTCCCCGAGTGCAGACTTCTACAATAGCT
TTCGGCTCTTAACAACCCGTGACAGCAACCATTTCAACATCAAGAGCCCGGAGGATTGCACTGTG
CTCGGTCTTGAATGGGCTTCAGGCTCAAGCGAGATCAACAAGCAGGAGATACCAATGGCTTCGGA
ACAGCGCAGCGTGCGTCGAATGCCACAACAGAAGCAACGGTATAACACCTCCAGCGCCACAACTT
CTCGTGTGGCCCGCGAAAGTGTAATGAGTATGAAAGGTTTGACAGAAAGAGCCTATGTTTATCCT
TGTTCAAAAGCTCAGAGCTGTCAGAGAAGACACATCGCTACGCTGGCTCATTCGCCCCGTTAGTA
GGGGCTCATCCGCAACTCTTATGATATATCGCTACGCTCTACTCA
Found at i:156634 original size:30 final size:30
Alignment explanation
Indices: 156598--156674 Score: 154
Period size: 30 Copynumber: 2.6 Consensus size: 30
156588 ATCGTCTCGC
156598 CCGTCGACTATCGTCTCCTCTACTTCGTAT
1 CCGTCGACTATCGTCTCCTCTACTTCGTAT
156628 CCGTCGACTATCGTCTCCTCTACTTCGTAT
1 CCGTCGACTATCGTCTCCTCTACTTCGTAT
156658 CCGTCGACTATCGTCTC
1 CCGTCGACTATCGTCTC
156675 TTCGACTAAC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.13, C:0.38, G:0.14, T:0.35
Consensus pattern (30 bp):
CCGTCGACTATCGTCTCCTCTACTTCGTAT
Left flanking sequence: Indices 156098 -- 156597
CAGCGCAGCGTGCGTCGAATGCCACAACAGAAGCAACGGTATAACACCTCCAGCGCCACAACTTC
TCGTGTGGCCCGCGAAAGTGTAATGAGTATGAAAGGTTTGACAGAAAGAGCCTATGTTTATCCTT
GTTCAAAAGCTCAGAGCTGTCAGAGAAGACACATCGCTACGCTGGCTCATTCGCCCCGTTAGTAG
GGGCTCATCCGCAACTCTTATGATATATCGCTACGCTCTACTCATAGTATACTTTGTCAGCTATA
TTCAATAAGTAGCTATGTCATCATATCGCTATCGACTCTTTCATTCATTGGCTCATTGATTCATT
TTTGGCTAGGCTGTTATACCTGCACTCGTGCTAAAATAGTTAGCGTCCCCGCCACTAATTCCCCC
TCGCCCGTTTCTGTAGGCACGAGTGAGTGAGCCGGTCTGCCATAGTCTAAGGATGCAATTCCCTC
CTAGCCTCGGTCACCTTCTTCCTATTACCTCGACTATCGTCTCGC
Right flanking sequence: Indices 156675 -- 157174
TTCGACTAACTAAAACCTTTTATCCCGTCTATTACCGGATAGCCGTAACTGTAGCGAAGCGTTAG
CACGCGCGTGGGCCGCCGAGGCCACAATTACTTTATTACTTGTTTCGAGGGCAACGGTACTGGCA
GGCCAGTCTCATTATTCGCCTTGATCCGGCGGGGCGTCGCATACTATTCATCTCATTGGGCTTGC
CGTTGTCAAACCCCTCAGGGGGCCCCGGTTTTAGGAGTTGGGGAGCTTGCTCTTTGAACATGATC
GAGATTGGGTTGGTGTGAACTGTCGGCAGCATTGGTATGCGCTATCGAAAATCATGCATTGGATG
GATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATCCTGTATC
TGTGATCCATGGATCTCCGATCGATCGGGAAACCGTATCCAAGCTCCGTGTCCCGTCTGCGCTCT
TTGGACTTTTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAA
Found at i:156681 original size:15 final size:15
Alignment explanation
Indices: 156580--156682 Score: 93
Period size: 15 Copynumber: 6.6 Consensus size: 15
156570 CTTCCTATTA
156580 CCTCGACTATCGTCT
1 CCTCGACTATCGTCT
156595 CGCCCGTCGACTATCGTCT
1 ---CC-TCGACTATCGTCT
* *
156614 CCTCTACT-TCGTAT
1 CCTCGACTATCGTCT
156628 CCGTCGACTATCGTCT
1 CC-TCGACTATCGTCT
* *
156644 CCTCTACT-TCGTAT
1 CCTCGACTATCGTCT
156658 CCGTCGACTATCGTCT
1 CC-TCGACTATCGTCT
*
156674 CTTCGACTA
1 CCTCGACTA
156683 ACTAAAACCT
Statistics
Matches: 71, Mismatches: 9, Indels: 13
0.76 0.10 0.14
Matches are distributed among these distances:
14 14 0.20
15 27 0.38
16 15 0.21
18 2 0.03
19 13 0.18
ACGTcount: A:0.14, C:0.38, G:0.15, T:0.34
Consensus pattern (15 bp):
CCTCGACTATCGTCT
Left flanking sequence: Indices 156080 -- 156579
ATACCAATGGCTTCGGAACAGCGCAGCGTGCGTCGAATGCCACAACAGAAGCAACGGTATAACAC
CTCCAGCGCCACAACTTCTCGTGTGGCCCGCGAAAGTGTAATGAGTATGAAAGGTTTGACAGAAA
GAGCCTATGTTTATCCTTGTTCAAAAGCTCAGAGCTGTCAGAGAAGACACATCGCTACGCTGGCT
CATTCGCCCCGTTAGTAGGGGCTCATCCGCAACTCTTATGATATATCGCTACGCTCTACTCATAG
TATACTTTGTCAGCTATATTCAATAAGTAGCTATGTCATCATATCGCTATCGACTCTTTCATTCA
TTGGCTCATTGATTCATTTTTGGCTAGGCTGTTATACCTGCACTCGTGCTAAAATAGTTAGCGTC
CCCGCCACTAATTCCCCCTCGCCCGTTTCTGTAGGCACGAGTGAGTGAGCCGGTCTGCCATAGTC
TAAGGATGCAATTCCCTCCTAGCCTCGGTCACCTTCTTCCTATTA
Right flanking sequence: Indices 156683 -- 157182
ACTAAAACCTTTTATCCCGTCTATTACCGGATAGCCGTAACTGTAGCGAAGCGTTAGCACGCGCG
TGGGCCGCCGAGGCCACAATTACTTTATTACTTGTTTCGAGGGCAACGGTACTGGCAGGCCAGTC
TCATTATTCGCCTTGATCCGGCGGGGCGTCGCATACTATTCATCTCATTGGGCTTGCCGTTGTCA
AACCCCTCAGGGGGCCCCGGTTTTAGGAGTTGGGGAGCTTGCTCTTTGAACATGATCGAGATTGG
GTTGGTGTGAACTGTCGGCAGCATTGGTATGCGCTATCGAAAATCATGCATTGGATGGATGCCCG
GGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATCCTGTATCTGTGATCC
ATGGATCTCCGATCGATCGGGAAACCGTATCCAAGCTCCGTGTCCCGTCTGCGCTCTTTGGACTT
TTCAAACTTAGCGAACTGAAACATCTGAGTAGCTAAAGGAAGGGA
Found at i:161460 original size:17 final size:17
Alignment explanation
Indices: 161438--161470 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
161428 TTGTAGGGGT
*
161438 CTGAGGTCACTTCAGAC
1 CTGAGGTAACTTCAGAC
161455 CTGAGGTAACTTCAGA
1 CTGAGGTAACTTCAGA
161471 ATCTAAAGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.24
Consensus pattern (17 bp):
CTGAGGTAACTTCAGAC
Left flanking sequence: Indices 160938 -- 161437
TTAGTTATACCAGTCCTCTAGCGCGGAGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTG
AGGTCACAGGTTCAAATCCTGTCTCCGCTTGTTTTTTCAAAAGCTAGTTGTGTAATTATGTGACC
TAGTCAATTTTTATTTTGGGGTGGGAAAGAGGAAAGCAAAATTACGATAATCTCTTATTCAACTA
TACCACCTCTTTTTCTTATATTATACTAGTAGGCGGATAGCGGGAATCGAACCCACCTTGGCAAA
GATCAATTTTACCACTCGACCATATCCGCATTTTCTTCGTTCCTCATATGTATGCATATGTCCAC
ACATATATGACATATATTCTATATCATATATGCGTCTGGATCATATTTGTACAGGGCGGCTAGGA
ACTCTTTTTAGTTTACGAGGGATTCCACACTTTCAAAATAAACGCTGTAGCAGATTTGTTACAGG
AGAAATTTGGGGACCTCCCTTGATCTAACATTGGATTGTAGGGGT
Right flanking sequence: Indices 161471 -- 161970
ATCTAAAGCAGTGACGGCGTGGTTAAGGAAAGGATTTTGCGTCACTTGCATCATGGCTGGAGTGG
CTCTAGTCTTTATTTTCATTAGTAGGCTCGACTGTAAGGCGGTAGGTAGAGGAGACGCGACGGGA
AGAGAATATAACCTCAATCCACTTCTTCCTTCTTTCATATACCTCCCCACCAATATACCGAGACA
AATGGGAATAACCGAACCACGTCTACAAAATGCCAGTACCATGCAGCTGCTTCAAAGCCAACGTG
ATGCTCCTTGGTCAGATGACCAAGATATTGGCGAATACCACATATGATCAAGAAAAGAGTACCTA
TAATCACATGAAAACCATGAAAGCCAGTTGCTGAAAAAAAGGTAGAACCATAAATACTATCCGAA
ATAGTGGAGGGTGCTTGGTAATATTCCATTCCTTGAAAGCCCGTGAATACTAGTGCCAGTAAAAC
GGTAGCTACTAAAGCGTAAACAGCCCGTTTTTCCTTCCCCGCGAG
Found at i:163024 original size:18 final size:18
Alignment explanation
Indices: 163001--163055 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 18
162991 CGAGCTAGGT
163001 AGGTGAGGTGATAACCGA
1 AGGTGAGGTGATAACCGA
* * * **
163019 AGGTGAAGCGTTAGTCGA
1 AGGTGAGGTGATAACCGA
*
163037 AAGTGAGGTGATAACCGA
1 AGGTGAGGTGATAACCGA
163055 A
1 A
163056 CCTTTAGGTA
Statistics
Matches: 26, Mismatches: 11, Indels: 0
0.70 0.30 0.00
Matches are distributed among these distances:
18 26 1.00
ACGTcount: A:0.35, C:0.11, G:0.36, T:0.18
Consensus pattern (18 bp):
AGGTGAGGTGATAACCGA
Left flanking sequence: Indices 162501 -- 163000
GTTGTGGTCCGGGTCTATAGAAATATAACTCTATATAGAAATATAGAAGGCTACGAAGTAGGTTT
TAGTTAGTCGAGTAGTAAAGGTAGAGGGCTTTTGTAAAAGTTGCATTTCATATAACTGTAAAAAA
ACGTGACTAACCCGTTTTCTAGAGGCTCGACCGATAGGGAGAGGAAGACGGACGACCAAAGGCTC
GACTGATAGGAGAGGAGATAGTCGCACGAGGAACGAGACTCCCGTCGAGGTATAGGAAGCACGAG
GCTCGACTGATAAGGCGGTAGGTAGAGGAGACGATAGTCGACGGATACGAAGTAGAGGAGACGAT
AGTCGACGGAGAGTGAGGTGATAACCGAAGAGACGCTAGGAGAAGGCTACGAAGTAGCGAAAGGT
AGGCTCGACTGTAAGGCTACGAAGTAGGTTGAAGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGA
TAGTAGAAGGTGAAGCGTTAGTCGAAAGTGAGGTGCGAGCTAGGT
Right flanking sequence: Indices 163056 -- 163555
CCTTTAGGTAGATTTTAGTTAGTCTCAGGATACGAAGTAGAGGTATAGGAAGAGTAGTAAAGGTA
GACGATAGCCGAAGGTTGGTCTCATTTTCTTTCGGTATGACAGGGCAAACAAACAAATAGGCTCG
GAAGGGCTGGTTCTTTCATTGCATTTATATAATTTATTTTGACTATAAAAAGAAAGAAAGACTCT
CTCTAACTATATATTCATATTCCGGGAGAAGAGAATCGTTGGTTTGTTTGACCGACGAACTATGT
GTATGTGGGAAAATCGAAGAGAGGAGCAACCATAGGTAGAGAGCGGCTCACGTTCCTATGACTAT
AGTAGCAGGTGAAAAACAAGCAGCTAGTAACCGTTAAATATAGAATCCAGCCAACTTCCTACCAA
ATGCGCCTACCGAATCAGAAGAGCCTACCAAGTCAGATGCGTCTACCGAGCCAGATGAGTCCACT
TCAGACCTTGCCCTTGTGGTCGAGATTACTTTATTACCCCGTGCC
Found at i:164731 original size:32 final size:32
Alignment explanation
Indices: 164695--164803 Score: 143
Period size: 32 Copynumber: 3.5 Consensus size: 32
164685 GGTGAGACGA
164695 TAGTCGAAGGATACCGTTAGGTAGATTTTAGT
1 TAGTCGAAGGATACCGTTAGGTAGATTTTAGT
** * *
164727 TAGTCTCAGGATA-CG--AAGTAGGTTTTAGT
1 TAGTCGAAGGATACCGTTAGGTAGATTTTAGT
164756 TAGTCGAAGGATACCGTTAGGTAGATTTTAGT
1 TAGTCGAAGGATACCGTTAGGTAGATTTTAGT
**
164788 TAGTCTCAGGATACCG
1 TAGTCGAAGGATACCG
164804 GACGGTAGGT
Statistics
Matches: 64, Mismatches: 10, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
29 23 0.36
30 2 0.03
31 2 0.03
32 37 0.58
ACGTcount: A:0.28, C:0.12, G:0.28, T:0.33
Consensus pattern (32 bp):
TAGTCGAAGGATACCGTTAGGTAGATTTTAGT
Left flanking sequence: Indices 164195 -- 164694
TCCCCATGGTCAGATAGTCCCCCTCGTGCTTACTCCCGATCCGAAGCACCCCTTTTCCATTCATA
GAGAGATCCTATCGTCAAAATCAATAAAAAGGCCATCATGGACCAAAATCCAAACAGATCAATCT
TGTTGGGAGGTACTGCCCAAGGAAAAGAAAAGGTGACTTCCGGATCAGGGATAATAAATAAAATG
GAAACCGGATAAAATCGTATATCGAAACGACTTCTGGCATCACCGGAGGGATCGGAACCACATTC
GTGGGCCGACAATTTTTCTGGATAGGTCGAACTATTGGAAGAAAATGGAAAAGGAAGACCGAGTG
GGATCAAAGAAACTAGCAGACTGATCAATAAAAAGATACAAATAGGTGCAAATTCCGACATCACC
ACGGCCCACTTCGTTCTCTCGCTCTGCTCGCGGAGCGGCATACCGAAAATACCTCAGGATACGAA
GTAGGGAAGAGGCTCGACTGTAAGGCTACGAAGTAGGTGAGACGA
Right flanking sequence: Indices 164804 -- 165303
GACGGTAGGTAGCAAACTTTTTCTTGCCATAATGTTCAGTTCATCAATGATACCGTTCAGATCCT
AGATGTAGAAATATAAGAAGACGAATACACCTGATTCATCGAAATAAACGAGATTGTTGCTGATA
TAGCACATAAAAAAATAACTAACTAAATTAACCAAATTTTCCCGATTCATCAGGAAAGCTGCATA
AGTGAATATATAACCTACAGAAAAGTGGGCTAATCCAACCAATCTTGCTTGTACAATGGAAAGCC
GGTTTATCTTTCCATCGAATTAAATTAGCTAAAGGTGTGCGTTCATGAGCCCATGCTAAAGTTTC
AATCAATTCCTATATCCACGCCAAGAAATTAAAAACATAAATCCAGTAGCCCAAACAAGATGTCC
AAATAAGAACATCCATGCCCAAACCGATAAGCTATTCATACCAAAAGGATTATACCCATTGATAA
GTTGTGAAGAGTTTAACCATAGATAATCTCTTAACCACCCCATCA
Found at i:178448 original size:30 final size:30
Alignment explanation
Indices: 178407--178688 Score: 455
Period size: 30 Copynumber: 9.5 Consensus size: 30
178397 GCTCGACTGT
*
178407 AAGGCTACGAAGTAGGTGAGACGTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCG
***
178437 AAGGATACGAAGTAGGTTTTA-GTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCG
178466 AAGGATACGAAGTAGGTGAGACGTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCG
178496 AAGGATACGAAGTAGGTGAGACGTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCG
***
178526 AAGGATACGAAGTAGGTTTTA-GTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCG
178555 AAGGATACGAAGTAGGTGAGACGTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCG
178585 AAGGATACGAAGTAGGTGAGACGTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCG
**
178615 AAGGATACGAAGTAGGT-TTA-GTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCG
178643 AAGGATACGAAGTAGGTGAGACGTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCG
178673 AAGGATACGAAGTAGG
1 AAGGATACGAAGTAGG
178689 CTCGACTGAT
Statistics
Matches: 231, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
28 25 0.11
29 54 0.23
30 152 0.66
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.23
Consensus pattern (30 bp):
AAGGATACGAAGTAGGTGAGACGTTAGTCG
Left flanking sequence: Indices 177907 -- 178406
CGTATCCCCTCTACCCCTTTAGTCCTCCAGGAGGGAATATCCTTGACTATGTTACTCAAAATGGA
ACGAAATGATCTTCTTTTGTTCCTCGGTTGAAAAGAGATGTCTTGAGCAATCGGAGAAGCACTTT
GATAAACAGATTGGATCTTTACCGACTCAATGGAGGTCTCCGTCTTTGTTCTCTCCGTCAAAAAA
GATCTAATTTTTTGCACTTCGTTCAAATAAGAGTTGTACGGATGTCTCCCCGCCTCCTTGGCCGT
GTGGAACATGGATGAGCATTATGCCATTCCCATTTAACATATTTCCTGTATGGCAGAGCTAGTTG
TGAGATCCGGCATAATTTCATTTCCTCATTACACAAGTTGCGCAAGGTTTTGACGGACCAGTAGC
GTTCCGCAATGACCAATGGGTCTCTTCAGCGGGTCACGCTTGACAGTGGTGTGGTCCGGTCCCCG
GTCCGCTGTGCTGAAGGCTCGACTGATAAAGAGAGGCTCGACTGT
Right flanking sequence: Indices 178689 -- 179188
CTCGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGTTAGTCGAGT
AGTAAAGGTAGAGTGAGGTGATAACCGAAGGCTCGACTGTACGGAGAGGAAGACGGACGACCAAA
GGCTCGACTGTACGGAGAGGAAGACGGACGACCAAAGGCTCGACTGATAGGAGAGGAGATAGTCG
CACGAGGGACTAGACGGTACTCTTCGGAGAGTTTAACCGGGACGAGACGATAGTCGACTTTAGGG
ACGAGACGATAGTCTCAGGAGAGTTTAGGACGACCGGGACGAGACGATAGTCGAGGTATAGGAAG
CACAGAGGAGACGGAGATAAAACAAACACGGTTTGTATAGGCAAAACCTATCAAAGCATGCACTT
TTATCAGTTTTCTGCTTTGAATCTTTCGATTCATTTGGCTCTCACGCTCACTTAATTAATGACAT
TTATGGGAATTCCCATATTTTTAATGGAATGAACCTGCCCTTTCT
Found at i:178484 original size:59 final size:60
Alignment explanation
Indices: 178407--178688 Score: 455
Period size: 59 Copynumber: 4.8 Consensus size: 60
178397 GCTCGACTGT
* ***
178407 AAGGCTACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTA-GTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCG
178466 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCG
***
178526 AAGGATACGAAGTAGGTTTTA-GTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCG
**
178585 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGT-TTA-GTTAGTCG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCG
178643 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGG
1 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGG
178689 CTCGACTGAT
Statistics
Matches: 209, Mismatches: 12, Indels: 5
0.92 0.05 0.02
Matches are distributed among these distances:
58 54 0.26
59 104 0.50
60 51 0.24
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.23
Consensus pattern (60 bp):
AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCG
Left flanking sequence: Indices 177907 -- 178406
CGTATCCCCTCTACCCCTTTAGTCCTCCAGGAGGGAATATCCTTGACTATGTTACTCAAAATGGA
ACGAAATGATCTTCTTTTGTTCCTCGGTTGAAAAGAGATGTCTTGAGCAATCGGAGAAGCACTTT
GATAAACAGATTGGATCTTTACCGACTCAATGGAGGTCTCCGTCTTTGTTCTCTCCGTCAAAAAA
GATCTAATTTTTTGCACTTCGTTCAAATAAGAGTTGTACGGATGTCTCCCCGCCTCCTTGGCCGT
GTGGAACATGGATGAGCATTATGCCATTCCCATTTAACATATTTCCTGTATGGCAGAGCTAGTTG
TGAGATCCGGCATAATTTCATTTCCTCATTACACAAGTTGCGCAAGGTTTTGACGGACCAGTAGC
GTTCCGCAATGACCAATGGGTCTCTTCAGCGGGTCACGCTTGACAGTGGTGTGGTCCGGTCCCCG
GTCCGCTGTGCTGAAGGCTCGACTGATAAAGAGAGGCTCGACTGT
Right flanking sequence: Indices 178689 -- 179188
CTCGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGTTAGTCGAGT
AGTAAAGGTAGAGTGAGGTGATAACCGAAGGCTCGACTGTACGGAGAGGAAGACGGACGACCAAA
GGCTCGACTGTACGGAGAGGAAGACGGACGACCAAAGGCTCGACTGATAGGAGAGGAGATAGTCG
CACGAGGGACTAGACGGTACTCTTCGGAGAGTTTAACCGGGACGAGACGATAGTCGACTTTAGGG
ACGAGACGATAGTCTCAGGAGAGTTTAGGACGACCGGGACGAGACGATAGTCGAGGTATAGGAAG
CACAGAGGAGACGGAGATAAAACAAACACGGTTTGTATAGGCAAAACCTATCAAAGCATGCACTT
TTATCAGTTTTCTGCTTTGAATCTTTCGATTCATTTGGCTCTCACGCTCACTTAATTAATGACAT
TTATGGGAATTCCCATATTTTTAATGGAATGAACCTGCCCTTTCT
Found at i:178563 original size:89 final size:89
Alignment explanation
Indices: 178407--178688 Score: 548
Period size: 89 Copynumber: 3.2 Consensus size: 89
178397 GCTCGACTGT
*
178407 AAGGCTACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCGAAGGAT
1 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCGAAGGAT
178472 ACGAAGTAGGTGAGACGTTAGTCG
66 ACGAAGTAGGTGAGACGTTAGTCG
178496 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCGAAGGAT
1 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCGAAGGAT
178561 ACGAAGTAGGTGAGACGTTAGTCG
66 ACGAAGTAGGTGAGACGTTAGTCG
178585 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGG-TTTAGTTAGTCGAAGGAT
1 AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCGAAGGAT
178649 ACGAAGTAGGTGAGACGTTAGTCG
66 ACGAAGTAGGTGAGACGTTAGTCG
178673 AAGGATACGAAGTAGG
1 AAGGATACGAAGTAGG
178689 CTCGACTGAT
Statistics
Matches: 192, Mismatches: 1, Indels: 1
0.99 0.01 0.01
Matches are distributed among these distances:
88 58 0.30
89 134 0.70
ACGTcount: A:0.33, C:0.09, G:0.35, T:0.23
Consensus pattern (89 bp):
AAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCGAAGGAT
ACGAAGTAGGTGAGACGTTAGTCG
Left flanking sequence: Indices 177907 -- 178406
CGTATCCCCTCTACCCCTTTAGTCCTCCAGGAGGGAATATCCTTGACTATGTTACTCAAAATGGA
ACGAAATGATCTTCTTTTGTTCCTCGGTTGAAAAGAGATGTCTTGAGCAATCGGAGAAGCACTTT
GATAAACAGATTGGATCTTTACCGACTCAATGGAGGTCTCCGTCTTTGTTCTCTCCGTCAAAAAA
GATCTAATTTTTTGCACTTCGTTCAAATAAGAGTTGTACGGATGTCTCCCCGCCTCCTTGGCCGT
GTGGAACATGGATGAGCATTATGCCATTCCCATTTAACATATTTCCTGTATGGCAGAGCTAGTTG
TGAGATCCGGCATAATTTCATTTCCTCATTACACAAGTTGCGCAAGGTTTTGACGGACCAGTAGC
GTTCCGCAATGACCAATGGGTCTCTTCAGCGGGTCACGCTTGACAGTGGTGTGGTCCGGTCCCCG
GTCCGCTGTGCTGAAGGCTCGACTGATAAAGAGAGGCTCGACTGT
Right flanking sequence: Indices 178689 -- 179188
CTCGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGACGTTAGTCGAGT
AGTAAAGGTAGAGTGAGGTGATAACCGAAGGCTCGACTGTACGGAGAGGAAGACGGACGACCAAA
GGCTCGACTGTACGGAGAGGAAGACGGACGACCAAAGGCTCGACTGATAGGAGAGGAGATAGTCG
CACGAGGGACTAGACGGTACTCTTCGGAGAGTTTAACCGGGACGAGACGATAGTCGACTTTAGGG
ACGAGACGATAGTCTCAGGAGAGTTTAGGACGACCGGGACGAGACGATAGTCGAGGTATAGGAAG
CACAGAGGAGACGGAGATAAAACAAACACGGTTTGTATAGGCAAAACCTATCAAAGCATGCACTT
TTATCAGTTTTCTGCTTTGAATCTTTCGATTCATTTGGCTCTCACGCTCACTTAATTAATGACAT
TTATGGGAATTCCCATATTTTTAATGGAATGAACCTGCCCTTTCT
Found at i:178737 original size:30 final size:30
Alignment explanation
Indices: 178703--178770 Score: 136
Period size: 30 Copynumber: 2.3 Consensus size: 30
178693 ACTGATATGG
178703 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
1 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
178733 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
1 AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
178763 AGAGTGAG
1 AGAGTGAG
178771 GTGATAACCG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 38 1.00
ACGTcount: A:0.34, C:0.06, G:0.38, T:0.22
Consensus pattern (30 bp):
AGAGTGAGACGTTAGTCGAGTAGTAAAGGT
Left flanking sequence: Indices 178203 -- 178702
ACATATTTCCTGTATGGCAGAGCTAGTTGTGAGATCCGGCATAATTTCATTTCCTCATTACACAA
GTTGCGCAAGGTTTTGACGGACCAGTAGCGTTCCGCAATGACCAATGGGTCTCTTCAGCGGGTCA
CGCTTGACAGTGGTGTGGTCCGGTCCCCGGTCCGCTGTGCTGAAGGCTCGACTGATAAAGAGAGG
CTCGACTGTAAGGCTACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAG
TCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAA
GGATACGAAGTAGGTTTTAGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATAC
GAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTAGTTAGTCGAAGGATACGAAGTAG
GTGAGACGTTAGTCGAAGGATACGAAGTAGGCTCGACTGATATGG
Right flanking sequence: Indices 178771 -- 179270
GTGATAACCGAAGGCTCGACTGTACGGAGAGGAAGACGGACGACCAAAGGCTCGACTGTACGGAG
AGGAAGACGGACGACCAAAGGCTCGACTGATAGGAGAGGAGATAGTCGCACGAGGGACTAGACGG
TACTCTTCGGAGAGTTTAACCGGGACGAGACGATAGTCGACTTTAGGGACGAGACGATAGTCTCA
GGAGAGTTTAGGACGACCGGGACGAGACGATAGTCGAGGTATAGGAAGCACAGAGGAGACGGAGA
TAAAACAAACACGGTTTGTATAGGCAAAACCTATCAAAGCATGCACTTTTATCAGTTTTCTGCTT
TGAATCTTTCGATTCATTTGGCTCTCACGCTCACTTAATTAATGACATTTATGGGAATTCCCATA
TTTTTAATGGAATGAACCTGCCCTTTCTTTTCTGTTCGTAAAAGTATATAAATTGATACAAGAAT
ATTTATAGGACTCTTCTGATCAGACAAAAAATCTGTAATTGTCAG
Found at i:178828 original size:36 final size:36
Alignment explanation
Indices: 178781--178875 Score: 174
Period size: 36 Copynumber: 2.6 Consensus size: 36
178771 GTGATAACCG
178781 AAGGCTCGACTGTACGGAGAGGAAGACGGACGACCA
1 AAGGCTCGACTGTACGGAGAGGAAGACGGACGACCA
178817 AAGGCTCGACTGTACGGAGAGGAAGACGGACGACCA
1 AAGGCTCGACTGTACGGAGAGGAAGACGGACGACCA
178853 AAGGCTCGACTGATA-GGAGAGGA
1 AAGGCTCGACTG-TACGGAGAGGA
178876 GATAGTCGCA
Statistics
Matches: 58, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
36 56 0.97
37 2 0.03
ACGTcount: A:0.34, C:0.20, G:0.37, T:0.09
Consensus pattern (36 bp):
AAGGCTCGACTGTACGGAGAGGAAGACGGACGACCA
Left flanking sequence: Indices 178281 -- 178780
TTGACGGACCAGTAGCGTTCCGCAATGACCAATGGGTCTCTTCAGCGGGTCACGCTTGACAGTGG
TGTGGTCCGGTCCCCGGTCCGCTGTGCTGAAGGCTCGACTGATAAAGAGAGGCTCGACTGTAAGG
CTACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTTTTAGTTAGTCGAAGGATACGA
AGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAG
GTTTTAGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGTCGAAGGATACGAAGTAGGTGAGA
CGTTAGTCGAAGGATACGAAGTAGGTTTAGTTAGTCGAAGGATACGAAGTAGGTGAGACGTTAGT
CGAAGGATACGAAGTAGGCTCGACTGATATGGAGAGTGAGACGTTAGTCGAGTAGTAAAGGTAGA
GTGAGACGTTAGTCGAGTAGTAAAGGTAGAGTGAGGTGATAACCG
Right flanking sequence: Indices 178876 -- 179375
GATAGTCGCACGAGGGACTAGACGGTACTCTTCGGAGAGTTTAACCGGGACGAGACGATAGTCGA
CTTTAGGGACGAGACGATAGTCTCAGGAGAGTTTAGGACGACCGGGACGAGACGATAGTCGAGGT
ATAGGAAGCACAGAGGAGACGGAGATAAAACAAACACGGTTTGTATAGGCAAAACCTATCAAAGC
ATGCACTTTTATCAGTTTTCTGCTTTGAATCTTTCGATTCATTTGGCTCTCACGCTCACTTAATT
AATGACATTTATGGGAATTCCCATATTTTTAATGGAATGAACCTGCCCTTTCTTTTCTGTTCGTA
AAAGTATATAAATTGATACAAGAATATTTATAGGACTCTTCTGATCAGACAAAAAATCTGTAATT
GTCAGTAAAGTTGTTTCTTTAGTTTTATTTGTTTTGTTATTTGTTCGTTATATATTCTTAATCTG
ATTTTATTAATTATTACTTAATGAAACTAATTCTCTTAATTTAAA
Found at i:187488 original size:33 final size:33
Alignment explanation
Indices: 187451--187533 Score: 82
Period size: 30 Copynumber: 2.6 Consensus size: 33
187441 TCGCCCTTCG
187451 CGTCTCATCTACCTAACGGTACCCGTCGACTAT
1 CGTCTCATCTACCTAACGGTACCCGTCGACTAT
* * * * **
187484 CGTCTCCTCTA-CT-TC-GTATCCTTCTCCTAT
1 CGTCTCATCTACCTAACGGTACCCGTCGACTAT
*
187514 CGTCTCAACTACCTAACGGT
1 CGTCTCATCTACCTAACGGT
187534 TCGGTTATCA
Statistics
Matches: 38, Mismatches: 9, Indels: 6
0.72 0.17 0.11
Matches are distributed among these distances:
30 20 0.53
31 3 0.08
32 3 0.08
33 12 0.32
ACGTcount: A:0.18, C:0.37, G:0.12, T:0.33
Consensus pattern (33 bp):
CGTCTCATCTACCTAACGGTACCCGTCGACTAT
Left flanking sequence: Indices 186951 -- 187450
GGAAGGAAGAAGAGAGAGAGTGTCGCCGGGGAGTTGAGAGCGGATCGTCGTCTTTGTAGAATAAC
AAAGAGTACGATCGTCGGACTGGCCCCCTTCACATGACCTAAAAAGAGAAAGAGGTCCATGCGTG
CTACTATAAGGCCTCTAAACTCCTCCCTCAGGACACTGTTGCGTTGCCATGGGGACGGGGGGGAC
CCGACTTCCATAGGTCCTTGGTTCGACCTCCGGAGGAGAATTGAGGTCCTTGCGCGGGCGTCTCA
TCCCTGGCAACGTCGCTTGCTCTGTATGGAGTGCCCCGTGGTTCCTCAAGTGCCAGCCACAGAGA
GGAATGCCATCCCCCGGGGCGCTATTTCCCACTAACCACTCGCTCGCCGGCCGCTCGGGCTCCGC
GTTTCAAGTTCGTTATCCTAACCGTCTCCTCTGCTCTACCGGGAGCCTGGCCCCTTCGACTATCG
TCTCAACTCCTACTTCCTATACCTCGACTATCGTCTCGCCCTTCG
Right flanking sequence: Indices 187534 -- 188033
TCGGTTATCACCTCACTCTCCGTCGACTATCGTCTCCTCTACTTCGTATCCGTCGACTATCGTCT
CCTCTACCTACCGCCTTATCAGTCGAGCCTCGTGCTTCCTATACCTCGACTATCGTCTCGTCCCG
GTCCGTTGGTCGTCCGGCTCTTCGACTAACTAAAACCTTCTTCCTGATGGGACGGTATGCTTCTT
CCTATACCTCGACGGGAGTCTCGTCCCGTGCCGTTGGTCATCCTAAAACCTACTTCGTAGCCTAC
TTGTAGCCTTCTCCTATCGTCTCACCCCGTTAGCTGGTCGTCCTAAAACCTACTTCGTAGCCTTA
CAGTCGAGCCTACTTCGTAGCCTCTATAAACGGGGTTAGTCACTTTTGCAGTTATATGAAACGCA
ACTTTTACAAAATTACCTAACGGTACCATTCTACTATCGTCTCACCTACTTCGTACCCAGTACCA
TTCTACTAGCGTCTCACCTACTTCGTACCCAGTACCATTCTACTA
Found at i:187996 original size:37 final size:37
Alignment explanation
Indices: 187946--188055 Score: 202
Period size: 37 Copynumber: 3.0 Consensus size: 37
187936 TTACCTAACG
187946 GTACCATTCTACTATCGTCTCACCTACTTCGTACCCA
1 GTACCATTCTACTATCGTCTCACCTACTTCGTACCCA
*
187983 GTACCATTCTACTAGCGTCTCACCTACTTCGTACCCA
1 GTACCATTCTACTATCGTCTCACCTACTTCGTACCCA
*
188020 GTACCATTCTACTATCGTCTCGCCTACTTCGTACCC
1 GTACCATTCTACTATCGTCTCACCTACTTCGTACCC
188056 TTCGGTTATC
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 70 1.00
ACGTcount: A:0.20, C:0.38, G:0.10, T:0.32
Consensus pattern (37 bp):
GTACCATTCTACTATCGTCTCACCTACTTCGTACCCA
Left flanking sequence: Indices 187446 -- 187945
CTTCGCGTCTCATCTACCTAACGGTACCCGTCGACTATCGTCTCCTCTACTTCGTATCCTTCTCC
TATCGTCTCAACTACCTAACGGTTCGGTTATCACCTCACTCTCCGTCGACTATCGTCTCCTCTAC
TTCGTATCCGTCGACTATCGTCTCCTCTACCTACCGCCTTATCAGTCGAGCCTCGTGCTTCCTAT
ACCTCGACTATCGTCTCGTCCCGGTCCGTTGGTCGTCCGGCTCTTCGACTAACTAAAACCTTCTT
CCTGATGGGACGGTATGCTTCTTCCTATACCTCGACGGGAGTCTCGTCCCGTGCCGTTGGTCATC
CTAAAACCTACTTCGTAGCCTACTTGTAGCCTTCTCCTATCGTCTCACCCCGTTAGCTGGTCGTC
CTAAAACCTACTTCGTAGCCTTACAGTCGAGCCTACTTCGTAGCCTCTATAAACGGGGTTAGTCA
CTTTTGCAGTTATATGAAACGCAACTTTTACAAAATTACCTAACG
Right flanking sequence: Indices 188056 -- 188555
TTCGGTTATCACCTCACTCTCCGTCGACTATCGTCTCCTCTACCTACCGCCTTATCAGTCGAGCC
TTCTCCTATCGTCTCACCTACCTAAGGTAGTACCGTTAGCTGGTCGGACCTTCTTCTATCTTATT
TTCTGCTTTACTCCTCGGCTCCCTACTGCTCCAGCCGCTCGCTGTAATAGCTTGTTGCTTATCGG
GGGGATCGCACCCCGGGTGGTGTGGCTGAGCCAGAGTGGGCTCAGCAGTCGGCCTATGTATCCGG
GCGCACGCGTAGAGGCATGATTAGTTCCACGAATCTCACTGCACTGACCATAGTAAACTCCTTCT
CGTTGTACCAAAATGGAGGTCTGATTTGAACGACCAGGTACAGCATCACATTTGACACCTGAGGA
AGGTACAGCCCAACTATGAGGTACATCAGCGGGTGTTACAATCATACGTAGATGACTTTTGGCTG
GTACAACCACTCTATTGTCCACTTCTAATAAACGTGATTGACCCA
Found at i:189890 original size:12 final size:12
Alignment explanation
Indices: 189873--189899 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
189863 CTAACTTCAA
189873 CCTACTTCGTAG
1 CCTACTTCGTAG
189885 CCTACTTCGTAG
1 CCTACTTCGTAG
189897 CCT
1 CCT
189900 TACAGTCGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.37, G:0.15, T:0.33
Consensus pattern (12 bp):
CCTACTTCGTAG
Left flanking sequence: Indices 189373 -- 189872
AAGGTGGACGGAAATGGTCTTGTTGTACCTCACTCTCGTCTTCAATGGGGTCTGCTCTTTCTTTT
TTGGGCGAGTATGCCAATATGATCTTAATGAGGTGCGGGGCTTTGCATCTGATATTCGTTGGGCT
TCCCTATGCGCAGCGTCCCGGCCTTTTTGTGCAATAAACCCCTTCCGGCCGAAGACTAGTGATAG
GTGGTCCCGCGGAGCTTTCGGAGAAGGGTAGACGGGGGTGTAAGCACAGCAATGAACCGCGGCGA
ACCCTCGACCCATCTGACGATTAGGAGGGAGATCCTCAGTAGTGGTGACCCTTTGACTCTTCCAC
GGACTTATACATGTACCGAATGCTCATACGGGAAAGTGCCAGTCTCTAAAGAACTCCATACTACC
TTCGGTAGCCTACCTAACGGTTCGGTTATCACCTCACTCTCCGTCTTCCGGATTGGACGGTACGC
TTCGGTTATCACCTCACTCTACCTTTACTACTCGACTAACTTCAA
Right flanking sequence: Indices 189900 -- 190399
TACAGTCGAGCCTCGTGCGACTATCTCCTCTCCTATCAGTCGAGCCTTTGGTCGTCCGTCTTCCT
CTCCGTACAGTCGAGCCTACCTACCGCCTTATCAGTCGAGCCTTTCTTTCTCGTCCACGATCACA
ATGGGGGGGGGTGCAGACACACCTGCGCGGATTACAGGTGACGGTTACAAGAATGTCGGGGAAGT
GAATAGTACCCGACGGCATGAAGGGATGAATGTAGACCCATCGGGCAGGGATAATCATTCTGGTC
CTGGGAGAGGTTATTAAGCAGCTGTTTAACTGACCTGCCTGTCTCATTATTCGCTGCCCTACTAT
AGGACTAGAGAGACTTCCCATTCGCTTAAAAGCGTGCTCACCGTCCGTTGGGGAAAAGGAGTTGG
CCCGATCGAAAAAGGAGTACTAGTACTAATAAGAAACCAAAGATTCTCTCTTCTTAAACAACCGG
TATCTTCCACACTTAACCAGCATTTGATAGATTATCCAACTCCGA
Done.