Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt1/NC_068745.1/NC_068745/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           324124
Total number of identified SSRs:                 50
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	39
2	10
3	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	total
A	-	-	-	-	-	12	6	1				1	20
C	-	-	-	-	-		1						1
G	-	-	-	-	-			1					1
T	-	-	-	-	-	9	2	3	2			1	17
AG	-	1											1
AT	-	2				1							3
TA	-	2	3	1									6
AAT	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	total
A/T	-	-	-	-	-	21	8	4	2			2	37
C/G	-	-	-	-	-		1	1					2
AG/CT	-	1											1
AT/AT	-	4	3	1		1							9
AAT/ATT	1												1