Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_072309
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 162956
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Found at i:60 original size:22 final size:22
Alignment explanation
Indices: 32--75 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
22 CCCCATATCT
32 CGCTTAAGCGAGATATGGGGTA
1 CGCTTAAGCGAGATATGGGGTA
54 CGCTTAAGCGAGATATGGGGTA
1 CGCTTAAGCGAGATATGGGGTA
76 TTGTTATTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.36, T:0.23
Consensus pattern (22 bp):
CGCTTAAGCGAGATATGGGGTA
Left flanking sequence: Indices 1 -- 31
ACATCAAACAAAATAACAATACCCCATATCT
Right flanking sequence: Indices 76 -- 575
TTGTTATTTCAGGGTATTGCTACATTTCTTTAACAATTCAGATACACTAAGACAAAAATCTTATC
CATTTGTAGATGAAACTTCAACAGCAGCTAGGTCTAGAGGGAAATTGTGAGCATTACGTTCATGC
ATTACTTCCATACCAAGGTTTGCACGGTTGATGATATCAGCCCAAGTGTTAATAACACGACCCTG
ACTGTCAACTACAGATTGGTTAAAATTAAAACCATTTAGGTTGAAAGCCATAGTGCTAATACCTA
AAGCAGTGAACCAAATACCAATTACAGGCCAAGCAGCCAAGAAGAAATGTAAAGAACGAGAATTG
TTGAAACTAGCATATTGGAAGATCAATCGCCCAAAATAACCATGAGCAGCTACGATATTATAAGT
CTCTTCCTCTTGGCCGAATCTGTAACCTTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGATCA
AACTAGAGGTTACCAAAGAACCATGCATAGCACTAAATAGGGAGC
Found at i:3472 original size:13 final size:13
Alignment explanation
Indices: 3431--3484 Score: 67
Period size: 13 Copynumber: 4.2 Consensus size: 13
3421 TTATGTATAT
3431 TATGTATAATAAA
1 TATGTATAATAAA
* *
3444 TAT-AATAA-AGAT
1 TATGTATAATA-AA
3456 TATGTATAATAAA
1 TATGTATAATAAA
3469 TATGTATAATAAA
1 TATGTATAATAAA
3482 TAT
1 TAT
3485 AATAAAGAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
11 1 0.03
12 8 0.24
13 24 0.71
14 1 0.03
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (13 bp):
TATGTATAATAAA
Left flanking sequence: Indices 2931 -- 3430
GATTGTAAATTGTGAGATTTTGGTATTTCTTTTTCTTCAAGGGAAGATATTAACTGCAGCGAAAA
TGGAATTTCTACAATGACTGCAAAACCTTCAGATAGAATCTGAGAAAAAAAATTAAAATAAAAAT
AATTGTTATGCCCGACAAATATATTTTGATAAATATCATTAACCGAATAAATCAAATAATTTTTT
TGATACATTCGAATAATTAAACGTTTCACAAGTACTGAACTAAATTTATTGTCATAACCCAAGGA
GTTTTGGGGTTCATAAAAAATTGAACTATTTAACCCATGATCATAAGTAAATACGTAAATATATT
CTTGAAAGAGAAGTGGATATAGAAACTGTTGTTGCCGAGATCTATCTTCTTCTAAATATCCTTGT
AATTCTTCCATTTATATTTCCCCATGTGAAGCAGAGGTAGAAAGAACTTCTTGAGTTATAAAATA
ACTAATACATAGTGCAATATGGTCAAAACAGAGTATTATGTATAT
Right flanking sequence: Indices 3485 -- 3984
AATAAAGAAGATTATGTATATATACAATAATAATAATAAACCTGTAAAGGAAAGAGGAAATCCAA
TCAATAGGTTTTTTTACTACCCTTTTTCTAGAAAAAATGGTTTATCTTCATTATAATTACAAGAG
GATAATGACCCTTTATTTTTGCAACCTGATTGCTCTTTTGATTTTGGAATTAATTATCTTTATCA
GTATACTGTTTCTTTTACACATTCGTCTCTAACCCATAATAATAAATATTTAGGATTCATAAAAA
AAAAGAATCAATGGTCTCCTCACGGGAGACCCCATCCTTTCCCGTACCAGGCACTAATCCATTTT
TAACGTTTAACTAGATCGGGTAATCATTTAATTCAAATTAAGAACATAAGCTCGTTGCTTTTTGG
TTTATCAGAATTGGAATTGGAGCCATGAAGCTCTATCCATTTATTCACTAGACCAAACTATAAAT
TTGAATTTGTTTTGTCCACTTCCCTACCAAAAAAATTGTAAGAAT
Found at i:4436 original size:13 final size:13
Alignment explanation
Indices: 4415--4447 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
4405 AAAAAGCACC
*
4415 AAATTCCTAATAG
1 AAATGCCTAATAG
4428 AAATGCCTAATAG
1 AAATGCCTAATAG
4441 AAATGCC
1 AAATGCC
4448 AAAATTCCGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.45, C:0.18, G:0.12, T:0.24
Consensus pattern (13 bp):
AAATGCCTAATAG
Left flanking sequence: Indices 3915 -- 4414
TTATTCACTAGACCAAACTATAAATTTGAATTTGTTTTGTCCACTTCCCTACCAAAAAAATTGTA
AGAATTGAGTAAGGAGAAATTCTTAATTTCACTTTCATTTTAATTTGAAATTTTTTCAATATCAA
TAAAAATAAAATAATAGATTTATTATTTTATTTTTTTATTATATTACGTATTACGACATGCTGCT
TTTTCCATTCATTACCTTTGAGGATCAGTCGTGGTCTTATAGACTCTACCAAAAGTCTGGACGAA
TTTATTGCTTCATCAAAATGTGTAAAAGATCATAGTCGCACTTAAAAGCCGAGTACTCTACCGTT
GAGTTAGCAACCCAACCCTTCAAAATAAAAGTCGGATATGTAGATACGATCGAAATAAAAAACCA
ATTGAATTAGACTGTGCGACCCCATCAAAACATTGAACTAAGAACAAATCTTTCTTGTTGATTTA
TTGATCAATTAGAAAAAAAATGTATAGATCATAGTAAAAAGCACC
Right flanking sequence: Indices 4448 -- 4947
AAAATTCCGACGGACCAATCGTTTATTTATACATTTTTTTATTTAACCCGACTTAAGGAAAAAAA
AACATCTTCTATGACAGTAAACCCGGCAATAAAAACCCGTCATTTGACTGAAGTGAATTGAAAAC
CAAATCCAATAATACAATATAGGGTAGGGTCGGGATAAGGAGATTTCTTTATCTACGATCAATTA
TATTTGTTCAATATAACATTGTCAATATAAATATGACTAGAATGGTGATAAAACGAATAAAAAAC
TGAAGTAAATCAAATAAAGATTTTTGTTGGATTGGCACAAATAAAAAAAAATATAAATAAATCAG
AAATTTTTATAAAATAAGGGAGAGATAAAGACAGACAGGTTTATTCAATCAATAAAGGATAAACA
AGATTAATTCCTTGTTTGTTGCTGGATTCCTATAACAGGAAAAGGACAAATTATAGATAATCAAT
TGTAGGTAAATGTAAATAATTACACTATATATATTTATTCCTCCC
Found at i:6612 original size:16 final size:15
Alignment explanation
Indices: 6591--6620 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
6581 GTTAAATATT
6591 ATTAATATTGAAATAA
1 ATTAATATT-AAATAA
6607 ATTAATATTAAATA
1 ATTAATATTAAATA
6621 GACCGCTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.40
Consensus pattern (15 bp):
ATTAATATTAAATAA
Left flanking sequence: Indices 6091 -- 6590
TATATTTCATTTAATATGTGTAATCATGAATAGTCATTGGCTCAACAAGCAGTATATAATAGTCC
ATACTTTATACCTATGGATAGTTTCTAGCTATGGATAAAAAAGTATTCTATATACTTTTTGCGAA
TCTGGGATAAGGGTAAAGTTCAGTAAGGATAAAATTTATTTACCTCGATATTCTATCATATGAAT
AAAACATATTTATAAAAAAAAACGTTTGCTAAAGACTCATTTACATCCCCAACAGATTGTTCAGG
ATAGTCAATCACGAAGGATACATATTTATATAATATAACAAACAAAAAAAACTATAAAACTAAAA
TTTATTCATTTTAATTTAATATGTTTAGTTTAAAAAACTGGAGCAAAATCCATTATTAATCAAAT
AAACTCGTCCAACGACCCCAAAACAAAAGGTCGTAAATTTCTAGAAACTATTGATTTATCATACT
TTTTCAAGTACCAACCAAGAGTTCATAAAAAAAATGTTAAATATT
Right flanking sequence: Indices 6621 -- 7120
GACCGCTTGGCCTCCTTATATATATGAGTATAGGACTTTACCTTGTTTATTTTATATGATATGAT
CATATGGATTTTTTATGGTTATATGGTATATGGATTTTTTTGTATTTTGTTTTACTTTTTACTTC
AGGTTCGACAATTTTTCCATCAATTTCATAAAAAAGTTCAAGTACAAGTATATGAAATATACTAA
TTTCCCCCAATCCTTACTTTACATTACATGGATTTACAAACATATATTTCCAAAAATTTTTATTT
GAGGAATCTAAGATATAAGATAGAAAGAAATGGAATTCCGACAATTCTCCTATTTTGTTACCATA
CCATAACTTTAGAGGTTTTCTAAGACTGATGATGAAACTGATGAAATTAGTAACAAAAACTCGCT
ACTTTTTAGTATCATCTCCACATAGAAAAATTGGGATACCGATTTTTTACTTTAGGCGTTGTATG
GAAGGGAAGAGGGATGCCTTTGTTTCACGCTGCAATTCAGAATGC
Found at i:7335 original size:13 final size:13
Alignment explanation
Indices: 7317--7342 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7307 AGATTTTTTG
7317 TTTTATGTGGGAT
1 TTTTATGTGGGAT
7330 TTTTATGTGGGAT
1 TTTTATGTGGGAT
7343 ACAGTGTGAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.00, G:0.31, T:0.54
Consensus pattern (13 bp):
TTTTATGTGGGAT
Left flanking sequence: Indices 6817 -- 7316
TTCCCCCAATCCTTACTTTACATTACATGGATTTACAAACATATATTTCCAAAAATTTTTATTTG
AGGAATCTAAGATATAAGATAGAAAGAAATGGAATTCCGACAATTCTCCTATTTTGTTACCATAC
CATAACTTTAGAGGTTTTCTAAGACTGATGATGAAACTGATGAAATTAGTAACAAAAACTCGCTA
CTTTTTAGTATCATCTCCACATAGAAAAATTGGGATACCGATTTTTTACTTTAGGCGTTGTATGG
AAGGGAAGAGGGATGCCTTTGTTTCACGCTGCAATTCAGAATGCATTATGTGATAATTCACATTT
TATGAATATGTTATATTCAATTTAGTTAAATAGGTAACTAACTTAAAAATGAATATAACATAGTA
CGAGCATATTCTGAATGTGAATGATAAACCAAAAAATAATTTTAATTAAAAATGAAAAAAATACA
TTCTAAGAATTCAGAACAACTTTTTGTTCTCTTAAAGATTTTTTG
Right flanking sequence: Indices 7343 -- 7842
ACAGTGTGATCCTATCTTCTGTTTCTGATAGATAGGATCTGGGACGGAAGGATTCGAACCTCCGA
GTAACGGGACCAAAACCCGCTGCCTTACCGCTTGGCCACGCCCCATTTTTATCCTTTGGCACTAG
TAAAGACTACTAGTCTTATTAGTTATTGGTCAACCCCCCCCCCCCAAAAAAAAATACCCAAAAAA
GTACATTACATAATACATAATACATAATAAATACATATGAAATACATATGTAGCATATTTTTGTT
GCTAGGATTTAAGACATATAAATTATATATATAATGTAAAAAATTCATTGATCATTACGTAGAAT
TCAATTAAGATAATGTATGAAAGTAGAATTCCTTTCTTTTTCATTTTTCCCTTATAAAAAGAATT
CAATCAAAATAAAATTATCTAATACACAAGAACGAAATATTTGTTATGCTTAATATCTTTAACTT
AATCTGTATCTGTCTTAATTCTGTCCTTTATTCGAACAGTTTTTT
Found at i:8369 original size:13 final size:13
Alignment explanation
Indices: 8351--8375 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
8341 GGGTCGTGTA
8351 AAATTAAACAAAC
1 AAATTAAACAAAC
8364 AAATTAAACAAA
1 AAATTAAACAAA
8376 ATAGTAGATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.72, C:0.12, G:0.00, T:0.16
Consensus pattern (13 bp):
AAATTAAACAAAC
Left flanking sequence: Indices 7851 -- 8350
AATTGCCCGAAGCTTATGCGGTTTTCAATCCAATCGTAGATGTTATGCCTGTTATACCTCTTTTC
TTTTTTCTATTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTCGATAAAATTTTTAATACTTTGC
TAAATAGACTTATTTTACCAAATCCAAATCGATTCATGATTTATTCGATAATAAAATTCGAAAAA
TGAATAAGATCAACTAAGTATTACATTATTATTATAAACCCTCGATTCAAAAATTTCAATTATTG
TATATTAATATTAAATAACCGCAAAGATGAATTTGGATCAGCTTATTTACTCGTTCTCACCTTTC
AGTGAGCAAAGAGTTTACTAGGTCTAGGTCCCGTACAATACCTAATTGTCGATATGACAAGAAGT
TTTTTGTAAGTTGTAAGTAAGAAAGAAAAATCTTATTACATACAATACAAAGAAATTTGTAAAAA
TGACTTTCTTTTCCAAAATTGAATTTTTTTGCAGGGGGTCGTGTA
Right flanking sequence: Indices 8376 -- 8875
ATAGTAGATGTGTTGAAAAGAAAAAATAGGTAATCTATTCCCTTTTTCGAAAATAAGATTATTTT
GGAGGTTGTGCAATGCTTAGTCTTAAACTCTTTGTTTACACAGTAGTGATATTCTTTGTTTCTCT
CTTCATCTTCGGATTCTTATCTAATGATCCAGGACGTAATCCTGGACGTGAGGAATAATTTTTTT
TCTAAACTTTTCTTACTAAACTTTTCTTATTATTTTATCTATTCTATAAATTTACCTATGATAAA
TTCAAGGAATTTCAATTCCTTTTGAAAGTTCGAAATCGAAAGTATCAAGCGGGTCGAGTAATCAG
ATCGAGCGGAGAAAGAGGGATTCGAACCCTCGGTACGAATAATTCGTACAACGGATTAGCAATCC
GACGCTTTAGTCCACTCAGCCATCTCTCCAAACTCCAAATGGAAAAGAAAATCGAAATAATTTAA
ATTAAAGAAATTACGGAGAATTCAATATTTTCTTTATTTTATTTT
Found at i:8589 original size:14 final size:14
Alignment explanation
Indices: 8572--8599 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8562 AATTTTTTTT
8572 CTAAACTTTTCTTA
1 CTAAACTTTTCTTA
8586 CTAAACTTTTCTTA
1 CTAAACTTTTCTTA
8600 TTATTTTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.00, T:0.50
Consensus pattern (14 bp):
CTAAACTTTTCTTA
Left flanking sequence: Indices 8072 -- 8571
TATTATTATAAACCCTCGATTCAAAAATTTCAATTATTGTATATTAATATTAAATAACCGCAAAG
ATGAATTTGGATCAGCTTATTTACTCGTTCTCACCTTTCAGTGAGCAAAGAGTTTACTAGGTCTA
GGTCCCGTACAATACCTAATTGTCGATATGACAAGAAGTTTTTTGTAAGTTGTAAGTAAGAAAGA
AAAATCTTATTACATACAATACAAAGAAATTTGTAAAAATGACTTTCTTTTCCAAAATTGAATTT
TTTTGCAGGGGGTCGTGTAAAATTAAACAAACAAATTAAACAAAATAGTAGATGTGTTGAAAAGA
AAAAATAGGTAATCTATTCCCTTTTTCGAAAATAAGATTATTTTGGAGGTTGTGCAATGCTTAGT
CTTAAACTCTTTGTTTACACAGTAGTGATATTCTTTGTTTCTCTCTTCATCTTCGGATTCTTATC
TAATGATCCAGGACGTAATCCTGGACGTGAGGAATAATTTTTTTT
Right flanking sequence: Indices 8600 -- 9099
TTATTTTATCTATTCTATAAATTTACCTATGATAAATTCAAGGAATTTCAATTCCTTTTGAAAGT
TCGAAATCGAAAGTATCAAGCGGGTCGAGTAATCAGATCGAGCGGAGAAAGAGGGATTCGAACCC
TCGGTACGAATAATTCGTACAACGGATTAGCAATCCGACGCTTTAGTCCACTCAGCCATCTCTCC
AAACTCCAAATGGAAAAGAAAATCGAAATAATTTAAATTAAAGAAATTACGGAGAATTCAATATT
TTCTTTATTTTATTTTCATATTTCATATCATATATTATGAATTTATTTTATAATTAAATAAAAAA
TAAAATGCAATTATAAAATTTTATATTAGGAATTTCCTATTTTTCATTAATATAAAATAAGTAAG
TTCAGAGTAAATAAAGAACGAATTTGATTAGGAATTACATTTAGATAATGATTCGAAACAAGTAT
CTACAATACAATAGAAAGAATACCTTACTTCTTTGATTTTGTACG
Found at i:14780 original size:20 final size:18
Alignment explanation
Indices: 14753--14801 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 18
14743 TAAATTAAAA
14753 ATTTATTTATTAACTATTT
1 ATTTATTTATTAA-TATTT
14772 ATTTAATTTATTAATATTT
1 ATTT-ATTTATTAATATTT
* *
14791 ACTTATATATT
1 ATTTATTTATT
14802 GTATATTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
18 6 0.22
19 12 0.44
20 9 0.33
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (18 bp):
ATTTATTTATTAATATTT
Left flanking sequence: Indices 14253 -- 14752
ATACAATCAACCAATCAATTATGACTTTTTTAATTAAGATCCACAAGTTGAAATAATAATATTAA
TTACTAAATTAAAAAACGGAATCGTCAGAACTATCTCGTTTTTAGTTTTTAACTATCATAGAGTT
TTTGTAAATCCATATGCATACAGTTGTAACTATTGTATTTCTTTGTTTCGAACCATTCTTTCATT
TAATTCTTCGTTCTTTACTACACTACACTATTGTTAAGTTTATTTATTTTTTCATTCAAAAAAAA
ATTGCTAGAAGAGAAGGACTGATATTGAAATCTATCTAAATGCAGTGTGAGCTGCAATCAATATC
AATCAAATTATCAAATTAATTTAATACCAAATTAATCCAATATAAATATAAATTAATATAACAGC
TCACATATATTAATATGTAATAGTAATAAAAAAGTTAATATGTAATACATATTATGTAATAAAAA
AGTACCAATAGATATTAATTATTAATATCTTAACTTAAATTAAAA
Right flanking sequence: Indices 14802 -- 15301
GTATATTGTTCATATATAACATAACAAATATGAATAATGAGGATCCAGATTATGATTATAGGATT
GGTTGTAATTAGGAAAAATATAAATTCTAGCCTTACAATACTATAATCATAATCTAAATAAAAAT
AAATAAATAAATATAATAAACAATACTATAAAAAAAAAATAAATATTATAATAAATATTATATAG
TTATGTAATATAGCGATATTATGGATAGACTTATCTCATATAACTAAAGTCTCATATAACTAAAG
AATATTTAATGTGATTCTAATATTACATATCCATTCTTTTCTTCCATAATGTAAACCATCCTAAT
TTTTTTTTAATTGATTCTGGAATAGAATAATTCCTAGAAAAATAGACGGGGGTTTAGAGCCTATA
GACATTATTACATATATTATACTCTAACTATAACCTTCCCAGACCTTCTTTTTTTTTTTAGAATT
CTGTTGGAATATTGTCTATCTTTTCTCCTACAATTCTAGATGATG
Found at i:14987 original size:12 final size:12
Alignment explanation
Indices: 14969--14993 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
14959 ATAAAAAAAA
14969 AATAAATATTAT
1 AATAAATATTAT
14981 AATAAATATTAT
1 AATAAATATTAT
14993 A
1 A
14994 TAGTTATGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AATAAATATTAT
Left flanking sequence: Indices 14469 -- 14968
ACTACACTATTGTTAAGTTTATTTATTTTTTCATTCAAAAAAAAATTGCTAGAAGAGAAGGACTG
ATATTGAAATCTATCTAAATGCAGTGTGAGCTGCAATCAATATCAATCAAATTATCAAATTAATT
TAATACCAAATTAATCCAATATAAATATAAATTAATATAACAGCTCACATATATTAATATGTAAT
AGTAATAAAAAAGTTAATATGTAATACATATTATGTAATAAAAAAGTACCAATAGATATTAATTA
TTAATATCTTAACTTAAATTAAAAATTTATTTATTAACTATTTATTTAATTTATTAATATTTACT
TATATATTGTATATTGTTCATATATAACATAACAAATATGAATAATGAGGATCCAGATTATGATT
ATAGGATTGGTTGTAATTAGGAAAAATATAAATTCTAGCCTTACAATACTATAATCATAATCTAA
ATAAAAATAAATAAATAAATATAATAAACAATACTATAAAAAAAA
Right flanking sequence: Indices 14994 -- 15493
TAGTTATGTAATATAGCGATATTATGGATAGACTTATCTCATATAACTAAAGTCTCATATAACTA
AAGAATATTTAATGTGATTCTAATATTACATATCCATTCTTTTCTTCCATAATGTAAACCATCCT
AATTTTTTTTTAATTGATTCTGGAATAGAATAATTCCTAGAAAAATAGACGGGGGTTTAGAGCCT
ATAGACATTATTACATATATTATACTCTAACTATAACCTTCCCAGACCTTCTTTTTTTTTTTAGA
ATTCTGTTGGAATATTGTCTATCTTTTCTCCTACAATTCTAGATGATGGAATCATACACTATTAT
CTTACCCATCCAATTGGATTATCATGAATCATGTGGGATAAGCTTGCTTAATAATAGAATTAAAA
AAAAAAAAAAGACTATTTGAAAAGCTAGTTAATGATGACCTTCCATGGATTCACCTATATAAGCC
GCGGCTAAGGTTGCAAAAATAAGAGCTTGAATACCACTTGTAAAT
Found at i:15051 original size:16 final size:16
Alignment explanation
Indices: 15030--15061 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
15020 GATAGACTTA
15030 TCTCATATAACTAAAG
1 TCTCATATAACTAAAG
15046 TCTCATATAACTAAAG
1 TCTCATATAACTAAAG
15062 AATATTTAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.06, T:0.31
Consensus pattern (16 bp):
TCTCATATAACTAAAG
Left flanking sequence: Indices 14530 -- 15029
ACTGATATTGAAATCTATCTAAATGCAGTGTGAGCTGCAATCAATATCAATCAAATTATCAAATT
AATTTAATACCAAATTAATCCAATATAAATATAAATTAATATAACAGCTCACATATATTAATATG
TAATAGTAATAAAAAAGTTAATATGTAATACATATTATGTAATAAAAAAGTACCAATAGATATTA
ATTATTAATATCTTAACTTAAATTAAAAATTTATTTATTAACTATTTATTTAATTTATTAATATT
TACTTATATATTGTATATTGTTCATATATAACATAACAAATATGAATAATGAGGATCCAGATTAT
GATTATAGGATTGGTTGTAATTAGGAAAAATATAAATTCTAGCCTTACAATACTATAATCATAAT
CTAAATAAAAATAAATAAATAAATATAATAAACAATACTATAAAAAAAAAATAAATATTATAATA
AATATTATATAGTTATGTAATATAGCGATATTATGGATAGACTTA
Right flanking sequence: Indices 15062 -- 15561
AATATTTAATGTGATTCTAATATTACATATCCATTCTTTTCTTCCATAATGTAAACCATCCTAAT
TTTTTTTTAATTGATTCTGGAATAGAATAATTCCTAGAAAAATAGACGGGGGTTTAGAGCCTATA
GACATTATTACATATATTATACTCTAACTATAACCTTCCCAGACCTTCTTTTTTTTTTTAGAATT
CTGTTGGAATATTGTCTATCTTTTCTCCTACAATTCTAGATGATGGAATCATACACTATTATCTT
ACCCATCCAATTGGATTATCATGAATCATGTGGGATAAGCTTGCTTAATAATAGAATTAAAAAAA
AAAAAAAGACTATTTGAAAAGCTAGTTAATGATGACCTTCCATGGATTCACCTATATAAGCCGCG
GCTAAGGTTGCAAAAATAAGAGCTTGAATACCACTTGTAAATAATCCAAGAAACATGACAGGTAT
AGGAACTACTGAAGGGACTAAAGAAACAAGAACAACAACTACTAA
Found at i:17346 original size:14 final size:14
Alignment explanation
Indices: 17327--17353 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
17317 AAAGCCAGAC
17327 CAGATAATTAAAAA
1 CAGATAATTAAAAA
17341 CAGATAATTAAAA
1 CAGATAATTAAAA
17354 GATAGTTAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.63, C:0.07, G:0.07, T:0.22
Consensus pattern (14 bp):
CAGATAATTAAAAA
Left flanking sequence: Indices 16827 -- 17326
CATTTTTTATTAACATAATGACACCGGGCTCTTATTGCAGCCGATGCTACTGAATCTGCTGCTTT
ATTTTTGGTACCAACAATTAAGAAGGTTCTTCCCCTACTTGCCGCATCAAAAACTAAATCAGAGG
CTTCTGATAAAAAACGAGCAGTTCCAGTGAGATTTGTAATATGAATACCTTTACGCTTTGCAGAG
ATGTAAGGGGCCATTCTAGGATTCCATTTCTTAGTACCATGACCAAAATGAACTCCGGCCTCCAT
CATCTCTTCTAAATTAATGTTCCAATATCTTCTTGTCATTTTTCCCACACTTCCTTTTTGTTTTT
TTTTTACTTTAACAAAGAGACGAGGTACTTTGAAATAAGTAATTGTTCCGATGGAACCTTCTGCC
GGGAATTGACCTTTAATACACAGTACAAACCATTAATGTCTTTTAATTACTTATTTTTTTATCAA
TATTCGAACAAGAACAAGATAGTTAAGTTAAAAGAAAAGCCAGAC
Right flanking sequence: Indices 17354 -- 17853
GATAGTTAAAGATAGTTAAAGTAAAAGAATCCGCTCTTAGGAATCATGAAATCGCGTAAATGATT
GTTCTAATGTCTCATGGAAATTGTTTGGTACATAAGAACAAAATAATTCTCTATGGTGTAACAAA
AGATCTTTTATTTTCAAGTCAAATAGGTTCTTTCTTTTGATTTCCAAATAAAAGTTTTTGTCCTT
ACTTGAATGGTGCACTAATTTTTTGAATCCTGTACCAACAGGTATAATTCCACCTAGAACAACAT
TCTCTTTCAGGCCTTTCAACCAATCAATACGACCTCGTAGAGCAGCTTTTGCTAAAACTCGAGCG
GTTTCTTGAAAACTTGCTTCGGATATGAAACTTTGAGTATTCAAAGATGTCCTTGTTATTCCCAA
TAGGATTGCGCGATAAGAGATCGCTTCGTCCAAAGCGCGCCCCACTCGTTCCGCTCGCAACAATC
CAATTAATTCCCCAGGTGAAAAAACATTAGACATTCCATCTTCTG
Found at i:28302 original size:15 final size:15
Alignment explanation
Indices: 28282--28313 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
28272 TATCTTTTAC
28282 TATTTTACTACTATA
1 TATTTTACTACTATA
28297 TATTTTACTACTATA
1 TATTTTACTACTATA
28312 TA
1 TA
28314 ATATAATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.12, G:0.00, T:0.53
Consensus pattern (15 bp):
TATTTTACTACTATA
Left flanking sequence: Indices 27782 -- 28281
GAAAAATCCCATTATTAGCTCACTATTTATCGATCCATATGGTTCGATTTCGCAATGATGGAATG
TATATTCTGTTTACTGAATCACATGAAATTTTAGACAACCCCGTAAATGTACTTCATACGTATGA
GAACGGAAATGAGACAGAGGAATGAAGAGCATTTTCGACGCAAGACAAGTTCGAATTTGCGACAG
GTACAAATGGAAATGAATTTATAAAGCATTCCCAGAATAATTCCGCCACTTACACTTATGGAGTC
TTATATAGAATATAAAAATTCATCCAACTTCTACCTATTATTATGATAATACGATTAGATTGATT
GGGTACCAAAAAAATAAATGGATTCAGAATGAAATCGAATCTCTATGAATAAGATAAAGAAAGCC
AGTAGTAATATGGTTTCCCCTTTAGTTAAAGTTAATTTTTTTTCATGTTGAAAAAAAAATTTCGG
ATTTTTTGACTTTTACTATATATAAAATATAAATATATCTTTTAC
Right flanking sequence: Indices 28314 -- 28813
ATATAATATAATAATATAAATATAATTTGACTTTTACTATATATAATATATGTATTTATGGAATA
TGATTGAATTGCGTAATAGGAATAATATTTCCTAAGTAAAGTATATGCCGGTATAGCTATTCACC
TATCCACATATCTCATCTCATCTTTTTTTTTATAGCAATTTTGCTTGTGGCAACAGAAGTCAGAT
CACACTATATCATAATTTCTACTTTTTCTATTGTATTATAGAAAACGAAAAAAAAAACACGACGA
TTCCCTATAAGGATATGGGATATGTACATAAAAAAGATTCGTCCCGGTATATGTGTAACAATTTT
TGTTTTTGGGGTGTGGGTTTACATATACACATATCATATATATTGTTATATTTAAATTGATTTGT
TATGCCAGTAAGGAAAGGCAACAATTTGAGATACAAATTGAAGAACTTTTCACTAATTCAAAAAA
AATAGTTAATGGTTCCAATTTGCACTAAATTTTTCAGTCTGTGAC
Found at i:30145 original size:20 final size:20
Alignment explanation
Indices: 30120--30157 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
30110 AATTATACTG
*
30120 AAATACAGTAATGAATAAGA
1 AAATACAATAATGAATAAGA
30140 AAATACAATAATGAATAA
1 AAATACAATAATGAATAA
30158 TAACCATTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.63, C:0.05, G:0.11, T:0.21
Consensus pattern (20 bp):
AAATACAATAATGAATAAGA
Left flanking sequence: Indices 29620 -- 30119
GTCGAAAAAAAAAGGGTAACAAACAAAAGGTCTTAGTATTCCCACATGTTTCATTTCATTAGGAT
AGAAGTATTCCTTTTCTATCTAATTTTTCAAGAAAAGGTATGTGTATCATATCTGTACTTAATAA
TTATACTTCAAAATTCTACCAGAAATCTTAGAATATTGTTACAAGTAGATTCATTGGATTGGTTC
ATTAATAGCTTTAAGTCAGAATTATATTTTGACTCTGCACCATTAATTCCACTATGATTATTGAT
CAATAATTAAATAATTCCTTCATAGAGATAGGAGACATAATTCATATGGATATTGTAAGTCTCGC
TTGGGCTGCTTTAATGGTAGTCTTTACATTTTCCCTCTCACTCGTAGTATGGGGAAGGAGTGGAC
TTTAGGGAGGGGTACTACTAGTTTTTTAATTTAATTGTATGAATTGTTTAATTGAGCGTTTTGCG
AAGCTTTTTCTTTTTTAAGAATGTCTCTGTTTCAAAATTATACTG
Right flanking sequence: Indices 30158 -- 30657
TAACCATTCGATCAAACAATGAATGATTACTTTACTATAGTTCTATTTCGAAACTAAAATCTACG
CATGATAGGAAAATTTTTTCAACCGGATTCTTCCTAAACATTCTATTTTAATAAACCAGTTCTTA
CCAGAATTATGGATATTACAATGAACAAAAACCAGAAATGGGTTTTTTATTTTTTTCTTTATTTG
TTTCCCTCTTTTTTTACTTTTACTGTTCTAAGAGAACATAAAGTCATTCCGCTAATCTAATTAGA
TTATGGCAATACATACTTTCTATTGGAAGTGACTAGTTGTTGTCCAAACCAAAGAAAAGAGGTTC
TACACATAAGAAGATTAGATCCTTCTTTCGTTGCACGATTCACGTATCGTGTATTTCACCTTTCT
TTTAGACTCCTCTCCATTCCATTTTTTATGCTTTTTTGACTCATCTCATGTCTTAAGCATAAAAA
ATGGAATGGAGAGGAGTCTACTCTATTAACCTATTCCCTTTTACA
Found at i:32570 original size:15 final size:15
Alignment explanation
Indices: 32550--32596 Score: 85
Period size: 15 Copynumber: 3.1 Consensus size: 15
32540 ATGGTATACA
32550 TATTCTTAATGGTTT
1 TATTCTTAATGGTTT
*
32565 TATTCTTGATGGTTT
1 TATTCTTAATGGTTT
32580 TATTCTTAATGGTTT
1 TATTCTTAATGGTTT
32595 TA
1 TA
32597 AAAAACCATT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 30 1.00
ACGTcount: A:0.19, C:0.06, G:0.15, T:0.60
Consensus pattern (15 bp):
TATTCTTAATGGTTT
Left flanking sequence: Indices 32050 -- 32549
TCATTTACCCCGACGAATACTCTATCAAGGCACTTATGTTAAGTTCGTTGTGTCTCGTACAATAA
ACGAATACAATTTGCATATGTACTCCGGTAAAAAGGGGTACTCTTTTCTATTTTATTCATCAAGA
ATATTGAAAAACAAAAGTGGACAAGTATCTCTTAAATTAAAATAGTAAAGTAAATATAAGAATAC
TACCGATTGTACGAATCTAACTATTATGTTATGTCTCTCTCTTATCAATCGGCACTAATGAAAGA
AATGGAAATTCCCGTATTTGTATGATGATAAATACGAAATAAAAACAAAAGAAATAGGGATCCCG
CTGGGTATTAGCTCTTGCTCCCTCTTTCTTTTTTCACGTTAAATAAATTTATCCATTTATTTAAC
GGATCGGATCCTAGTTCGGGACTGACGGGGCTCGAACCCGCAGCTTCCGCCTTGACAGGGCGGTG
CTCTGACCAATTGAACTACAATCCCAGCGAGGTGTATGGTATACA
Right flanking sequence: Indices 32597 -- 33096
AAAAACCATTTTATTTTATTCGTCGTGTTGTAAGAGAGACATGAATGATATACTAACTGATATTA
TATACACATAGATATAGACTATACTGAAAGTAACACGGAGATATGGACTATAGTCAAAGTAACAC
AGATTACTAGTAACCCATGTTTTTTTAGTGCCAAAAATGGATAATCAACCTTTCAACGAGAAAAA
ACTATTTTTCTTTTCATAATCTTTGATTATGTATTACCAATCTAGAGTCTTAGAAAGATCAGAAT
GAATCAGAAAAACATGGATACATAAGAAAAAATGCTTGATCCGTAAAAGAGAAGGATTCCATTTT
TATGGAGGACAAATTTCTTATATCATTGGTTATATCATATTTATGGAGCGGCGAATTTTTGGGCC
GAGCTGGATTTGAACCAGCGTAGACATATCGCCAACGAATTTACAGTCCGTCCCCATTAACCGCT
CGGGCATCGACCCAGGAAGAATTCATTCTAGGCTTATGGATAATC
Found at i:32697 original size:29 final size:29
Alignment explanation
Indices: 32665--32729 Score: 85
Period size: 29 Copynumber: 2.2 Consensus size: 29
32655 GATATTATAT
* *
32665 ACACATAGATATAGACTATACTGAAAGTA
1 ACACAGAGATATAGACTATACTCAAAGTA
* * *
32694 ACACGGAGATATGGACTATAGTCAAAGTA
1 ACACAGAGATATAGACTATACTCAAAGTA
32723 ACACAGA
1 ACACAGA
32730 TTACTAGTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.46, C:0.15, G:0.18, T:0.20
Consensus pattern (29 bp):
ACACAGAGATATAGACTATACTCAAAGTA
Left flanking sequence: Indices 32165 -- 32664
TTTTATTCATCAAGAATATTGAAAAACAAAAGTGGACAAGTATCTCTTAAATTAAAATAGTAAAG
TAAATATAAGAATACTACCGATTGTACGAATCTAACTATTATGTTATGTCTCTCTCTTATCAATC
GGCACTAATGAAAGAAATGGAAATTCCCGTATTTGTATGATGATAAATACGAAATAAAAACAAAA
GAAATAGGGATCCCGCTGGGTATTAGCTCTTGCTCCCTCTTTCTTTTTTCACGTTAAATAAATTT
ATCCATTTATTTAACGGATCGGATCCTAGTTCGGGACTGACGGGGCTCGAACCCGCAGCTTCCGC
CTTGACAGGGCGGTGCTCTGACCAATTGAACTACAATCCCAGCGAGGTGTATGGTATACATATTC
TTAATGGTTTTATTCTTGATGGTTTTATTCTTAATGGTTTTAAAAAACCATTTTATTTTATTCGT
CGTGTTGTAAGAGAGACATGAATGATATACTAACTGATATTATAT
Right flanking sequence: Indices 32730 -- 33229
TTACTAGTAACCCATGTTTTTTTAGTGCCAAAAATGGATAATCAACCTTTCAACGAGAAAAAACT
ATTTTTCTTTTCATAATCTTTGATTATGTATTACCAATCTAGAGTCTTAGAAAGATCAGAATGAA
TCAGAAAAACATGGATACATAAGAAAAAATGCTTGATCCGTAAAAGAGAAGGATTCCATTTTTAT
GGAGGACAAATTTCTTATATCATTGGTTATATCATATTTATGGAGCGGCGAATTTTTGGGCCGAG
CTGGATTTGAACCAGCGTAGACATATCGCCAACGAATTTACAGTCCGTCCCCATTAACCGCTCGG
GCATCGACCCAGGAAGAATTCATTCTAGGCTTATGGATAATCCATAATCAACTTCCTTTCGTAGT
ACCCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGA
TAGGGGCATATCCGCCCGACTGTCATCATACTATGATGATAGTAT
Found at i:33400 original size:19 final size:19
Alignment explanation
Indices: 33362--33421 Score: 81
Period size: 19 Copynumber: 3.3 Consensus size: 19
33352 TTTTCATTTA
*
33362 TTTATTTT-TTT--TTTGC
1 TTTATTTTATTTAATTTGT
33378 TTTATTTTATTTAATTTGT
1 TTTATTTTATTTAATTTGT
33397 TTTATTTTATTTAATTTGT
1 TTTATTTTATTTAATTTGT
33416 ATTTAT
1 -TTTAT
33422 ATAAAATACT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
16 8 0.21
17 3 0.08
19 23 0.59
20 5 0.13
ACGTcount: A:0.18, C:0.02, G:0.05, T:0.75
Consensus pattern (19 bp):
TTTATTTTATTTAATTTGT
Left flanking sequence: Indices 32862 -- 33361
AGAAAAACATGGATACATAAGAAAAAATGCTTGATCCGTAAAAGAGAAGGATTCCATTTTTATGG
AGGACAAATTTCTTATATCATTGGTTATATCATATTTATGGAGCGGCGAATTTTTGGGCCGAGCT
GGATTTGAACCAGCGTAGACATATCGCCAACGAATTTACAGTCCGTCCCCATTAACCGCTCGGGC
ATCGACCCAGGAAGAATTCATTCTAGGCTTATGGATAATCCATAATCAACTTCCTTTCGTAGTAC
CCCCAGGGGAAGTCGAATCCCCGCTGCCTCCTTGAAAGAGAGATGTCCTGAACCACTAGACGATA
GGGGCATATCCGCCCGACTGTCATCATACTATGATGATAGTATGTATAGTTTTTTGGAATTGTCA
ATATAATCTAATGATATGACTAAATCCGAACACTCTTTTCTACTTTTGTGTTATGATTCCATAGA
ATTTTTTATTGGATGGGAATAAATGAACCGTCCAATTTTCATTTA
Right flanking sequence: Indices 33422 -- 33921
ATAAAATACTATATATAGTATAGCGAATATAGCGAAAGGAGCTATAGGATTCTGTCCGTTCGGGC
AGTGATTGGTCCAGCATAACGGAAAAGGGTGTAAAAACTCACTTAATTTCTTTTCTTCTTCACTC
ATTAATTTTAACTTAAAACTCGTTGCTTCCTTCGAGTAAATCTCGTTTTGATTGATCAGTAAAAG
GAAACAGGCGGGGTCGGTCTTGAAACAATTCATTGCATTATTAAAATAAAATTGACCCGCTTCAC
CTTTTGAGGGTAAATCGAATTGATCCTTTACTTTATAAATATAAACGAAACCCCTATGTATATGA
TATGTACATGATATATACATATATTATTTATATTTGTATTTGTTTGCAGTATGCAGTGCAGTAGA
CTCATAATGAAAATGTCTATAATTCATGAATTGAATACAAAGGGCCCTTTTAACTCAGTGGTAGA
GTAACGCCATGGTAAGGCGTAAGTCATCGGTTCAAATCCGATAAG
Found at i:46978 original size:24 final size:24
Alignment explanation
Indices: 46946--46993 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
46936 ACGGAACTAT
46946 AATAAATATTTCATCTAAGTTGAA
1 AATAAATATTTCATCTAAGTTGAA
46970 AATAAATATTTCATCTAAGTTGAA
1 AATAAATATTTCATCTAAGTTGAA
46994 TAACCGAGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (24 bp):
AATAAATATTTCATCTAAGTTGAA
Left flanking sequence: Indices 46446 -- 46945
TCGAGGATACACGACAGAAGGAATTGTTCTATCTACAAACTTCACCTTCACCAAGCGTGGGTTTA
TTTTAATAATTTGGTTTTTTCTATCTCGAACTATGTCTCTTTTCTTTCTCGTAATACTGGACCTA
AAAAAAAGAATCAAATCGCACCATCTCTGTAATAGGTAAATGCCTTTTTTTCTCCGGAAGTTGTC
GGAATTATTCGTAATAAGATATTGGCTACAATTGAAGAGGTCTTATCAATAAAATTTGCATTTAT
CTGAGATCTTGGCATAATTAACAATCCATTCTATAATTCTTTTCATTACCCTTAGGGTAAGGGGA
AAATGATCCCGCAAACTAAAGGAATTGTACGGTACGAAATAACATAAAATAAAAACAGACTAATT
ATAAAAAAAGATATGGACCTTTTGTTTGGATTGGACAAGGAGAGATATGAAATATTGAAATCAGA
TTCGATTTCATTCGAATTTCGTAGTATAACAACGAACGGAACTAT
Right flanking sequence: Indices 46994 -- 47493
TAACCGAGGATTGTACTGCGGATTCTGATAATTCGAGAAGTTTTTATTTGGTTATGATCCAAAGA
AGAAACAAAAAACAAAACGGATACTTACCTTAGTCTAATCCATTTTTTTTTTATAGAAAAATTAT
TTCGTTTTGTTTTTTGTTTGCATAACATGTATATGCCATGTCATACAATTTAAATATAAAAATAC
ACGGGACGATTCAATAATTTGTATTAGATCTATGGGATAGCTAATGAGCTAAATTTTTGTTGAGA
AATAGAAAATTTTATTTGATTTGAAAGGAATTTTTCCTATGGAACTATTCATCAGTCGCACTTGT
ACTGCAATAATATGAATGACTCGCTATTCACTATTCACTCGGTTTCTGGTCAATAATAAGATTAT
GTAGGAGAGATGGCCGAGTGGTTCAAGGCGTAGCATTGGAACTGCTATGTAGACTTTTGTTTACC
GAGGGTTCGAATCCCTCTCTTTCCGTTTATCTTAATTCACCAACG
Found at i:48652 original size:15 final size:15
Alignment explanation
Indices: 48632--48662 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
48622 TGTGGCTACG
48632 TTTTATAATTTGTTC
1 TTTTATAATTTGTTC
*
48647 TTTTATGATTTGTTC
1 TTTTATAATTTGTTC
48662 T
1 T
48663 GTAGAAAGAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.06, G:0.10, T:0.68
Consensus pattern (15 bp):
TTTTATAATTTGTTC
Left flanking sequence: Indices 48132 -- 48631
TTTTCCAGCAATATGCACATATTTAAGTAATTGTCGCTCTGTCAGACCATAATGAAACCGCAATT
TCTGTTTTTCTTCTAGACGAATACGATATTGCGATCTTTTACCAGAACGCAATTGGTTTTTAGGA
TCACTTCTGGAGCTAGGTCTTTTACTAGTTAGTCCTGGTAAAGTCCCCAGACGACGTATTTTTTT
GAAACGAGGTCCTCGGTAACGAGACATAAAGACTCCTTTTTTATTTTATTGAAATTTCATTGTTT
AAGAATAAACAAAAATTAAAACTGAACTCTAAATTAAGACTGAACTAAAGGATAAACAAAGCAAA
GCTAAATTTATTGAAATACTACAAAAAAGTAGAATAAAATATAAAATAAATTGTATCACTATCCG
TATTTTATATTTTATTCTACATTAGCTCTCTTTCTACAGAACAAATCATAAAAGAACAAATTTTA
AAATTTTTTGTATATATAGTGTATATATAGGAAGTTGTGGCTACG
Right flanking sequence: Indices 48663 -- 49162
GTAGAAAGAGATCTAATTCTTCCAACATGTTGTTTTTTATTTATAGTTGCAAGTTACCACGACAT
AATAGATGGATCAGTTATTCAACATTTTGATAAAATGGGGAGAGAGACTCTCAATCACGTAAAAA
ATCGATAGAAAAAAGCCGGCTATCGGAGTCGAACCGATGACCATCGCATTACAAATGCGATGCTC
TAACCTCTGAGCTAAGCGGGCTCACATATTACATACACATATCACATAACATAAGAGAAAAATAG
TATATAGAAATCAAAGAAACTACCGGATTTCATCTATTAGCCAATCTTAGCTTAGTTATTTATTT
TAATTTTATAATACTAACTATATTTATATTTAATATGAACTAGAACCATATAGTTGTATATAGTT
CATATTTTATTATATAGTATAGAACTAACTATATCTAACTATAGAACTAACTATAACTATATCTA
ACGATATAGATAGAATAAATAAAAAAAAAATGGAATTTTAAATTT
Found at i:49102 original size:12 final size:12
Alignment explanation
Indices: 49070--49107 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
49060 TATTATATAG
49070 TATAGAACTAAC
1 TATAGAACTAAC
*
49082 TAT--ATCTAAC
1 TATAGAACTAAC
49092 TATAGAACTAAC
1 TATAGAACTAAC
49104 TATA
1 TATA
49108 ACTATATCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
10 9 0.41
12 13 0.59
ACGTcount: A:0.47, C:0.16, G:0.05, T:0.32
Consensus pattern (12 bp):
TATAGAACTAAC
Left flanking sequence: Indices 48570 -- 49069
TAAAAGAACAAATTTTAAAATTTTTTGTATATATAGTGTATATATAGGAAGTTGTGGCTACGTTT
TATAATTTGTTCTTTTATGATTTGTTCTGTAGAAAGAGATCTAATTCTTCCAACATGTTGTTTTT
TATTTATAGTTGCAAGTTACCACGACATAATAGATGGATCAGTTATTCAACATTTTGATAAAATG
GGGAGAGAGACTCTCAATCACGTAAAAAATCGATAGAAAAAAGCCGGCTATCGGAGTCGAACCGA
TGACCATCGCATTACAAATGCGATGCTCTAACCTCTGAGCTAAGCGGGCTCACATATTACATACA
CATATCACATAACATAAGAGAAAAATAGTATATAGAAATCAAAGAAACTACCGGATTTCATCTAT
TAGCCAATCTTAGCTTAGTTATTTATTTTAATTTTATAATACTAACTATATTTATATTTAATATG
AACTAGAACCATATAGTTGTATATAGTTCATATTTTATTATATAG
Right flanking sequence: Indices 49108 -- 49607
ACTATATCTAACGATATAGATAGAATAAATAAAAAAAAAATGGAATTTTAAATTTTACTTATTTA
ATTTAATTAATTATAATATGATGAATATCAATTTAATCAAATTGTAAATTACAATTTGAAAAAAT
CGAACTCTTTCTGAAAACTTAAAATTTTTTAAAGCAGTTCTATAAAATTATAGAAATTTAATAGT
TATTAACTAGTAACTTATAATTTAATTGTTAATTATATATAGTTATAGTGAATAATAGGTGCTAA
GATAAGAAAAGGATAAAGAAAAGATACAATCTAAATTAAAATGAGACATTCCTCTGGTTTGATTC
GGAAAGGGAAGAGATAGGACGAAAAAAAAAGAATGAATATCGACCGTTCCACTATTTAAATTCGC
ACTGTAAAAATGAAAGGTAGGGGGAGAGGTATATATGTTGGATATACCTATCCATATTGAATTCC
GGATACATCAATGATAGAATCAATTTCTTATTGAAACAAAAAGTT
Found at i:53442 original size:16 final size:17
Alignment explanation
Indices: 53423--53459 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
53413 TCCTAATATT
53423 TATAATATCCTACCT-A
1 TATAATATCCTACCTAA
*
53439 TATAATATCTTACCTAA
1 TATAATATCCTACCTAA
53456 TATA
1 TATA
53460 TGTATACCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.74
17 5 0.26
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (17 bp):
TATAATATCCTACCTAA
Left flanking sequence: Indices 52923 -- 53422
ATACCCGATTCATAACTAGATAGTTTCTCCGGTCCTTCCCTAACCGGGGCTAAAACTCCGGAAAT
TACAAATGCCAAGATAGGAATAATGCTTGATATTATCAGAAATGCCCAGAAAATATCATATTCGT
GAAGCAGAAACATAAATGTACTCCTATTAATGTGGAATATGCTGAATTATTCGATTCGAATCGGA
AGTGTCAATTTATCCAGAACTTCTTATCTTAGTTTAGGCGAAAGAAGAATATATTTTGATCAAAC
GGCATAGTTTAGAGTTTCTGTGGGACATATCTTGTTTAAAGATTTACCTAAGAAAATCCCACTTA
CATTTTTTATTTCGATTCTATTTAGATATGGTGTAGACATAGGGTGCTCCTTCTTACAAAAACAA
GATTCTCTCACTTTGTCTTGGGTTCTCTATCCTCTATAAAAAGATAATTCTATAAAAACAAGTTA
ATAAAATACTAAAATATCCTATATTATCCTATATATCCTAATATT
Right flanking sequence: Indices 53460 -- 53959
TGTATACCTAATATATCCCAATAATTATTATTATAATATTATAAAATAAATATCCTATAATTAAT
AATTAATTAAATACTATGAATAGTCTATAATTAGTATATTCAAATTATTTATTTCATTTCCTTTT
TTCTTAATTAATTTGATTCAATCCGTTGAATTGAGAGGTGACATATAACTTGTTATATCTTTCTC
TACAAAAACAAAAAAAAAATTGGAAACTTTGAACCTGTACCATCCCACCTTATCAGAAATAAATA
AGAAGGATAGAGTTATTTCATTAGAGTTAGAATAAAAGATTCTTTCTATTTTGGAACAATCTCTA
GTAATAAACTAGATTACGATTTGAAATGAATCAAAATACTCGTTTGTTTTGTTATGGCAATAACA
CTTAATATTAATAATATAATGATAACACCAAACAATGGGGTAGATTCCGACACAAAAAAACTTTT
ACAGTACACCTATACTAGATACTAGACAATGAAACATAGCAAAGA
Found at i:57990 original size:19 final size:19
Alignment explanation
Indices: 57966--58003 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
57956 AGAATTTGAA
*
57966 CCCGAATTACATTTATGAT
1 CCCGAACTACATTTATGAT
57985 CCCGAACTACATTTATGAT
1 CCCGAACTACATTTATGAT
58004 TCAGTATTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.32, C:0.24, G:0.11, T:0.34
Consensus pattern (19 bp):
CCCGAACTACATTTATGAT
Left flanking sequence: Indices 57466 -- 57965
ATTTGCTGACCGACAGTATCTCGACCCTTAACTACTAAAGCGTTATAAATATTAGGCATCTTGCC
CGGAGGAAAAACAACATCTAGTACTGGGCCAATAATTTGAGCGATACGCCCTAGGTTTTGTGTGG
AAACCGCAGGACTAGAAGGGGTAGGATTGATTCTCATAATTATAATTAAAGTTAAATATGTCGAA
AATTTTTTTGTAATAGTGCCATGCCAAGGGGAAAATAAATGTCCGATAGCAGATTGATCGGTTAA
TTCAATACAATAAGAAATAAATGGGAGTTAGCACTCGATTTAGTTGGTGTCACCCAACCGAATAC
GATTCAATCGTATACTCATTGAATGAGTAAAGAGTCAATTTTCAAGTTCAGCTAATCCCTCTTTT
TTTTTCAAAAGAAATATCAAGTACATGAAATCACGAGTAAATCTCTTTAATTTCTCTATCATTAT
AGAAAAGACCATCCATATTGGATTCCAATATATATAGAATTTGAA
Right flanking sequence: Indices 58004 -- 58503
TCAGTATTTCGATCTCGTTGGCTATTGTTCTTTCTATTTTTTTTAGATATTTGATTTCTGCCTAT
CTATTCTTTATAACCTTTTTCGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAA
CATATATCACTGTCAAGAGGGAATTTTTCTTAGTATTTAGATATTTAGATTAGATTCAAAAGAAT
AAGGAGATAAATTTAATTGTAAATTTGCAAAACAAACATTAGGTTGCGTCATATATATCAAAGAG
TATACAATAATGATGTATTTGATGAATCAAATACATGGTCTAATAACGAACCATTTCATTTTAAA
ACATAACATTGAAATTTGTTGATAATATTAGTTGAATATTATTTTTTTTTGAAAGATTTTTGTCA
AAGGTTTCATTCACGCATAATCCATATCGAGTAGACCTTGTCGTTGTGAGAATTCTTAATTCATG
AGTTGTAGGGAGGGACTTATGTCACCACAAACAGAGACTAAAGCA
Found at i:62606 original size:20 final size:23
Alignment explanation
Indices: 62564--62609 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
62554 ATTATAGTTG
*
62564 ATATTATTTATCACTTATAAATA
1 ATATTATTTATCACATATAAATA
62587 ATATTATTTA-CA-ATAT-AATA
1 ATATTATTTATCACATATAAATA
62607 ATA
1 ATA
62610 ACTTGATATT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 7 0.32
21 3 0.14
22 2 0.09
23 10 0.45
ACGTcount: A:0.48, C:0.07, G:0.00, T:0.46
Consensus pattern (23 bp):
ATATTATTTATCACATATAAATA
Left flanking sequence: Indices 62064 -- 62563
TGAATACGACAGTACCCGAGGGTTCACAAACATCTGAGTATTTATTCGAAAAAGGTTTATTCGAC
CTAATAGTACCACGTAATCTTTTAAAAGGTGTTCTGAGTGAGTTATTTCAACTCCACGGTTTCTT
TCCTTTGAATCACAGTTCCAAAAATTAAAGTATAGCACTAGATTCGCTTATTTTATATTTTATTT
GTAGCGAACAAAAATAAATATTTAATTCATCGTAATCGTAATTAAAAGAAACAATATATATATTG
TTTTCCTTGTTGACATAAGTTCTCCTTGTAGATAGACAGAGGTTTCGGATAATTATATTTTTTCT
TTTGTTTTTTATTTATAATTATTTATTTAATATATTAAAATAATATTAATTATTATTTTAACTTA
TATTATGATATTCACTATAATATTCACTATTATATTAATTATTATTTAAATATATATATTCTAAA
TATTATAGTTTCTATCAAATCATATAGCTAATCGAATTATAGTTG
Right flanking sequence: Indices 62610 -- 63109
ACTTGATATTACTTATGATAGATATATCCTAAATAAGCATAAGAGGATATCTTTTTAATAGATAG
AAATATTAATAGATAGAAATAGTAAATCGAGGCATCTATTCTATGACAGATTTCAACTTACCCTC
CATTTTTGTACCTTTAGTGGGCCTAGTATTTCCGGCAATTGCAATGGTTTCTTTATTTCTTCATG
TCCAAAAAAATAAGATTGTCTAGACCCAATGGTAATGAATCTTATCAAGTGATTTCAACACTGTA
TGATAATACGGATATTTATTTCGTGTAATATGGTATGATATGTGCCTTTTGTGCCAAACACACAA
GTGAAAGAACTTTTATGCGGATATATAATATCTGTATAAATGCATGTATATGTGGATATAGCTGG
TTCAAAATGAATTAGCGAATATAAAAAATGGAAAGTCAATGTATCTAACTAATTACTCCCGATGT
TTCACATAACAATAGTGCTAGTTGGTGAAAGTTACTTCGGGGTCA
Found at i:62685 original size:16 final size:16
Alignment explanation
Indices: 62664--62695 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
62654 GGATATCTTT
62664 TTAATAGATAGAAATA
1 TTAATAGATAGAAATA
62680 TTAATAGATAGAAATA
1 TTAATAGATAGAAATA
62696 GTAAATCGAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.12, T:0.31
Consensus pattern (16 bp):
TTAATAGATAGAAATA
Left flanking sequence: Indices 62164 -- 62663
GAGTGAGTTATTTCAACTCCACGGTTTCTTTCCTTTGAATCACAGTTCCAAAAATTAAAGTATAG
CACTAGATTCGCTTATTTTATATTTTATTTGTAGCGAACAAAAATAAATATTTAATTCATCGTAA
TCGTAATTAAAAGAAACAATATATATATTGTTTTCCTTGTTGACATAAGTTCTCCTTGTAGATAG
ACAGAGGTTTCGGATAATTATATTTTTTCTTTTGTTTTTTATTTATAATTATTTATTTAATATAT
TAAAATAATATTAATTATTATTTTAACTTATATTATGATATTCACTATAATATTCACTATTATAT
TAATTATTATTTAAATATATATATTCTAAATATTATAGTTTCTATCAAATCATATAGCTAATCGA
ATTATAGTTGATATTATTTATCACTTATAAATAATATTATTTACAATATAATAATAACTTGATAT
TACTTATGATAGATATATCCTAAATAAGCATAAGAGGATATCTTT
Right flanking sequence: Indices 62696 -- 63195
GTAAATCGAGGCATCTATTCTATGACAGATTTCAACTTACCCTCCATTTTTGTACCTTTAGTGGG
CCTAGTATTTCCGGCAATTGCAATGGTTTCTTTATTTCTTCATGTCCAAAAAAATAAGATTGTCT
AGACCCAATGGTAATGAATCTTATCAAGTGATTTCAACACTGTATGATAATACGGATATTTATTT
CGTGTAATATGGTATGATATGTGCCTTTTGTGCCAAACACACAAGTGAAAGAACTTTTATGCGGA
TATATAATATCTGTATAAATGCATGTATATGTGGATATAGCTGGTTCAAAATGAATTAGCGAATA
TAAAAAATGGAAAGTCAATGTATCTAACTAATTACTCCCGATGTTTCACATAACAATAGTGCTAG
TTGGTGAAAGTTACTTCGGGGTCAAGAAAGGTAAAGTCAAATTTATTTGGGTTATTCGCTCAATT
CCAATCGAATGCAACTGAATGTAGTATAGTATGAATTGGCGATCA
Found at i:66560 original size:19 final size:19
Alignment explanation
Indices: 66536--66574 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
66526 AGTAAGTTCC
66536 ATTAGTAGTTTACTATAGA
1 ATTAGTAGTTTACTATAGA
66555 ATTAGTAGTTTACTATAGA
1 ATTAGTAGTTTACTATAGA
66574 A
1 A
66575 ATAGAAAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.41
Consensus pattern (19 bp):
ATTAGTAGTTTACTATAGA
Left flanking sequence: Indices 66036 -- 66535
GACCCATTACGGGTCCAAGGTCTTTTATTCTTTTTTGCATTTGTTATTTTGGCACAAGTTTTTTT
GGTTCTTAAAAAGAAACAGTTTGAAAAGGTTCAATTATACGAAATGAATTTCTAGGTGCGGGGAT
TTCTTAACATCAAGTTGGTAAAAGGTGCCAAATTTTTGTTGATCCATATATATGGATCAACAAAA
AATCTCCAAACCCTTTTTGTTGCTTTGTTTATACTTTTTTTCGTTTTGCGGTATGCCTGGAATTC
ATTACTTGTATCCTATTCTTTGTAATAGATATACAAACGAAGAGAATACAAGGGAAGGATGGCAA
ACCGGAACTCTTTTGTTTAGATTGATAGGAAGTTGTGGACAAACAAAAAGAGAGAAAAGATTATA
GGGGAATAATTGATTGAGCAAATAGAACTTCTTCTATTAACTTAAACTTATAACTTAGAGAAATT
ATTCAAACAAATTTAAATTTCAAATTATATTATAGAGTAAGTTCC
Right flanking sequence: Indices 66575 -- 67074
ATAGAAAGAAAGAATTTGGAGGATATCTCATGCGTATAAATCCATAGAATATTGTAGTATCCAGA
GATTACTCTTTTCTTCTTGCTTCGTATCGTAAGAATCAATTAGAGGAAGGACAGAGACTATGAAT
CAATCAATGGCTTCAATTCTTCAAAAACATTATTAAGAAACAAAAGAATAGAGTAATATTTAAAA
CATCAGAGCAAAAGATTCATTTTGTCATTTTTTTTCTACAAAACAAATATAATATTTTTATTATG
TTGACTGTATAACTTTCCAATTTTAATTTGTATGTTTCCAAATTTGTATGTTATGGAATAGATCA
AAGTCTTCTTATATTCTTATATCTTATAAGAGTAAGAACTCAGCGGGACCTTACCCTCCTTTGTC
TATCTGATTAGAGTGGTAAGGTCCCGCTGAGTTCTTACTCTTTCATGTCTACAATCTGGTTCATA
CGATTACTAGAGAGATGAACCCAACCCAGAATATGAACCGTAAAA
Found at i:68396 original size:18 final size:18
Alignment explanation
Indices: 68375--68472 Score: 78
Period size: 18 Copynumber: 5.4 Consensus size: 18
68365 TCGATAATAA
*
68375 TAATATACATATATAATG
1 TAATATATATATATAATG
68393 TAATATATTATATAGTAA--
1 TAATATA-TATATA-TAATG
68411 TAATATATATATATAATG
1 TAATATATATATATAATG
* * *
68429 TAATA-ATTCTATGTAATA
1 TAATATA-TATATATAATG
*
68447 TAGA-ATATATTATGTAATG
1 TA-ATATATA-TATATAATG
68466 TAATATA
1 TAATATA
68473 AAATAGTATA
Statistics
Matches: 65, Mismatches: 6, Indels: 17
0.74 0.07 0.19
Matches are distributed among these distances:
16 3 0.05
17 7 0.11
18 32 0.49
19 20 0.31
20 3 0.05
ACGTcount: A:0.48, C:0.02, G:0.07, T:0.43
Consensus pattern (18 bp):
TAATATATATATATAATG
Left flanking sequence: Indices 67875 -- 68374
GGAAATGGAAAACTACTGATATTGCATCTTTGTGAGATCGTCAATTTTGTACCAAAGGTTTATTT
AAAGTATACCGAATCAGTATAGCTATCCTCCCTCTGGCACAGCAACGCTGTCTAGATCGGTACCA
AAATGCTACACAATTCTTTTCTTCTTTTTTTGTTCCTTATTTATGCATAACTCCACGTTATTCAA
TATATGAATAGAAAGTTACTCAAATTCCTTATAAGATTTCCATTATTGGATTCATAATAGAAAAT
AAACAAACATCTTGAAAAAGTGTGAATCAATAGTTTCTTGTTTCTAATAATTCACGAAAGATATT
ATTAAATTATATTTACTCTTTACACAATTAAATTAATTTAATTTATACGTATAATATAATGGATC
TTAAATCCAGTAACAATTCTTTTTGTTGATTATAAAATTTTTTGTTTGAATCTTTTCATTTCAAG
TAATTGGTTGGTCGTAGTCGTATAGTCGTATATAGTCGATAATAA
Right flanking sequence: Indices 68473 -- 68972
AAATAGTATATAATACTTAATGAAAGAAAGAAATGAAAGAAAACCCGGCGATAACAATCTATATT
CATAATGATAATGCAACTGTTAGATCCAAAATAAAGGTCTTTCTTGACCGAATTAGAAGTATAGA
ACTCCCCGATATGGAAAGACGGAATATAGAATATAAAAGGATAATGAAAGTTGTTCGTCTTTGAA
TCGGGTTGGACCTGAAGAAAAAAGAATTAAAATAGAAAAATAAAGTAAAAGTTCTATTTTTCGAT
AGATTGTGGGGCACCTTTTTCTTCTTTTCCTTCGAAATATTATGTTATGGGCAATTAAGCAACCT
ATTACTGGACTGAGTCCAATGAAAAAAATAAAAAGGTAATTAGTATCAGGCATTCGTTCCAAAAC
GGATTATATCCTCTTGAAAAAGAAGGGAAATGATCAAAATTTAATTTTCAATTGGAACTAAACTG
ATTCTGTCAATTGATTTTTTCTTACCGTCATATTTTCTAAAAATT
Found at i:68412 original size:36 final size:33
Alignment explanation
Indices: 68372--68464 Score: 116
Period size: 36 Copynumber: 2.7 Consensus size: 33
68362 TAGTCGATAA
68372 TAATAATATACATATATAATGTAATATATTATATAG
1 TAATAATATA-ATATATAATGTAATA-ATTATAT-G
*
68408 TAATAATATATATATATAATGTAATAATTCTATG
1 TAATAATATA-ATATATAATGTAATAATTATATG
* *
68442 TAAT-ATAGAATATATTATGTAAT
1 TAATAATATAATATATAATGTAAT
68465 GTAATATAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
32 13 0.25
33 4 0.08
34 5 0.09
35 6 0.11
36 25 0.47
ACGTcount: A:0.48, C:0.02, G:0.06, T:0.43
Consensus pattern (33 bp):
TAATAATATAATATATAATGTAATAATTATATG
Left flanking sequence: Indices 67872 -- 68371
AATGGAAATGGAAAACTACTGATATTGCATCTTTGTGAGATCGTCAATTTTGTACCAAAGGTTTA
TTTAAAGTATACCGAATCAGTATAGCTATCCTCCCTCTGGCACAGCAACGCTGTCTAGATCGGTA
CCAAAATGCTACACAATTCTTTTCTTCTTTTTTTGTTCCTTATTTATGCATAACTCCACGTTATT
CAATATATGAATAGAAAGTTACTCAAATTCCTTATAAGATTTCCATTATTGGATTCATAATAGAA
AATAAACAAACATCTTGAAAAAGTGTGAATCAATAGTTTCTTGTTTCTAATAATTCACGAAAGAT
ATTATTAAATTATATTTACTCTTTACACAATTAAATTAATTTAATTTATACGTATAATATAATGG
ATCTTAAATCCAGTAACAATTCTTTTTGTTGATTATAAAATTTTTTGTTTGAATCTTTTCATTTC
AAGTAATTGGTTGGTCGTAGTCGTATAGTCGTATATAGTCGATAA
Right flanking sequence: Indices 68465 -- 68964
GTAATATAAAATAGTATATAATACTTAATGAAAGAAAGAAATGAAAGAAAACCCGGCGATAACAA
TCTATATTCATAATGATAATGCAACTGTTAGATCCAAAATAAAGGTCTTTCTTGACCGAATTAGA
AGTATAGAACTCCCCGATATGGAAAGACGGAATATAGAATATAAAAGGATAATGAAAGTTGTTCG
TCTTTGAATCGGGTTGGACCTGAAGAAAAAAGAATTAAAATAGAAAAATAAAGTAAAAGTTCTAT
TTTTCGATAGATTGTGGGGCACCTTTTTCTTCTTTTCCTTCGAAATATTATGTTATGGGCAATTA
AGCAACCTATTACTGGACTGAGTCCAATGAAAAAAATAAAAAGGTAATTAGTATCAGGCATTCGT
TCCAAAACGGATTATATCCTCTTGAAAAAGAAGGGAAATGATCAAAATTTAATTTTCAATTGGAA
CTAAACTGATTCTGTCAATTGATTTTTTCTTACCGTCATATTTTC
Found at i:68426 original size:13 final size:13
Alignment explanation
Indices: 68374--68427 Score: 53
Period size: 13 Copynumber: 4.4 Consensus size: 13
68364 GTCGATAATA
*
68374 ATAATATACATAT
1 ATAATATATATAT
*
68387 ATAATGTA-ATAT
1 ATAATATATATAT
68399 AT--TATATAGTA-
1 ATAATATATA-TAT
68410 ATAATATATATAT
1 ATAATATATATAT
68423 ATAAT
1 ATAAT
68428 GTAATAATTC
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
10 3 0.09
11 3 0.09
12 10 0.29
13 18 0.53
ACGTcount: A:0.52, C:0.02, G:0.04, T:0.43
Consensus pattern (13 bp):
ATAATATATATAT
Left flanking sequence: Indices 67874 -- 68373
TGGAAATGGAAAACTACTGATATTGCATCTTTGTGAGATCGTCAATTTTGTACCAAAGGTTTATT
TAAAGTATACCGAATCAGTATAGCTATCCTCCCTCTGGCACAGCAACGCTGTCTAGATCGGTACC
AAAATGCTACACAATTCTTTTCTTCTTTTTTTGTTCCTTATTTATGCATAACTCCACGTTATTCA
ATATATGAATAGAAAGTTACTCAAATTCCTTATAAGATTTCCATTATTGGATTCATAATAGAAAA
TAAACAAACATCTTGAAAAAGTGTGAATCAATAGTTTCTTGTTTCTAATAATTCACGAAAGATAT
TATTAAATTATATTTACTCTTTACACAATTAAATTAATTTAATTTATACGTATAATATAATGGAT
CTTAAATCCAGTAACAATTCTTTTTGTTGATTATAAAATTTTTTGTTTGAATCTTTTCATTTCAA
GTAATTGGTTGGTCGTAGTCGTATAGTCGTATATAGTCGATAATA
Right flanking sequence: Indices 68428 -- 68927
GTAATAATTCTATGTAATATAGAATATATTATGTAATGTAATATAAAATAGTATATAATACTTAA
TGAAAGAAAGAAATGAAAGAAAACCCGGCGATAACAATCTATATTCATAATGATAATGCAACTGT
TAGATCCAAAATAAAGGTCTTTCTTGACCGAATTAGAAGTATAGAACTCCCCGATATGGAAAGAC
GGAATATAGAATATAAAAGGATAATGAAAGTTGTTCGTCTTTGAATCGGGTTGGACCTGAAGAAA
AAAGAATTAAAATAGAAAAATAAAGTAAAAGTTCTATTTTTCGATAGATTGTGGGGCACCTTTTT
CTTCTTTTCCTTCGAAATATTATGTTATGGGCAATTAAGCAACCTATTACTGGACTGAGTCCAAT
GAAAAAAATAAAAAGGTAATTAGTATCAGGCATTCGTTCCAAAACGGATTATATCCTCTTGAAAA
AGAAGGGAAATGATCAAAATTTAATTTTCAATTGGAACTAAACTG
Found at i:71343 original size:21 final size:21
Alignment explanation
Indices: 71317--71381 Score: 103
Period size: 21 Copynumber: 3.1 Consensus size: 21
71307 AAACCATGGA
71317 TAAATCCAAACAATCTTTTCG
1 TAAATCCAAACAATCTTTTCG
*
71338 TAAATCCAAGCAATCTTTTCG
1 TAAATCCAAACAATCTTTTCG
* *
71359 CAAATCCAAACGATCTTTTCG
1 TAAATCCAAACAATCTTTTCG
71380 TA
1 TA
71382 GGCGTTTGCC
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.35, C:0.25, G:0.08, T:0.32
Consensus pattern (21 bp):
TAAATCCAAACAATCTTTTCG
Left flanking sequence: Indices 70817 -- 71316
TTATATTTCTAGTTAGTAACTTCTATTTAATTTATTTTTGTTTTCTTCTTCTTCAGCTCGGATCG
AAAATGTAAGAGTTAAGCCGATACAAAATTCAAAGGGGGTTTATGGCTAAGGGTAAGTATGTAAG
AGTTATAGTTATTTTAGAATGTACCGGTTGTGCCCGAAATGATGTCAATAAGGAATCGCCGGGTA
TTTCTAGATATATTACTCAAAAGAATCGACACAATACGCCTGGTCGATTAGAATTGAGAAAATTT
TGTCGCTATTGTCACAAGCATACGATTCATGGGGAAATCAAGAAATAGATTGAACGGAACACATG
TGTTCTTTTCAAGTCAAAGAAGAAAAAGAGCTTAACATATATTTAATTTTAATTTTTAATATAGA
ATATGAATAATGTGTATACATTATGCATACAAATCAAAGCCTATTTTGGTAGGATCTGAAGTAAA
TAAAATAAAGAAATAGAATTTTAGAGATAAGGAATAAACCATGGA
Right flanking sequence: Indices 71382 -- 71881
GGCGTTTGCCCCCAATTAGATCGGGGGATCGAATCGATTATAGAAACATGAGTTTAATTAGTCGA
TTTATTAGTGAACAAGGGAAAATATTATCTAGACGGGTGAATAGATTGACTTTGAAACAACAACG
ATTAATTACTATTGCTATAAAGCAAGCCCGTATTTTATCTTTGTTACCCTTTCTTAATAATGAGA
GACTATTTAAGAATAAAAAATCGGAGTCGATCCCCCGAACTCGAATTACTCGTCCTAGAAAAAAA
AAATAGACATACTCCTCAATTGACTCCAAACTCCAATTGTAACTCAAGCTCAGATGTGATTTTTA
TTCTATCTTCCCGGAGAAGTCACTCCGGGGAATTCTGTTTCGTTTCAATCATTCCTTTACTGTAC
ATGTACTTTATTTGATTTGATGATCTTGTTGGAAATCATGTAAAGACAATTCTTATTTGATATAG
CTATTTGTGCAGGTATTTTACGATTAAGAAGCAATTGCTTCTTGT
Found at i:74528 original size:38 final size:36
Alignment explanation
Indices: 74452--74521 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
74442 TTCTATTTCT
*
74452 TTTTTCTTTAACTTAATAGGTTTAAAAAAAAAAACG
1 TTTTTCTTCAACTTAATAGGTTTAAAAAAAAAAACG
74488 TTTTTCTTCAACTTAATAGGTTTAAAAAAAAAAA
1 TTTTTCTTCAACTTAATAGGTTTAAAAAAAAAAA
74522 AACGTTTAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.46, C:0.09, G:0.07, T:0.39
Consensus pattern (36 bp):
TTTTTCTTCAACTTAATAGGTTTAAAAAAAAAAACG
Left flanking sequence: Indices 73952 -- 74451
TATTACTTATTATTCATATTCAATATGGCGAAGGCATAGTGTTTCTTTTTTTTTTTTCAAATCAA
AACTCATTGGCGCCAAGCGTGAGGGAATGCTAGACGTTTGGTAATTTCTCCTCCGACCAGGATGA
AAGATGCCATCGAAGCGGCTATTCCCATGCATATTGTATGCACGTCGGGCGTTACAAATTGCATA
GTATCAAAAATAGCTATTCCTGATATTACCCATCCGCCGGGAGAGTTTATAAATAAATAAAGATC
CCTAGTCTGATCTTCTATACTGAGATATACCATGAGACCAACAATAGTATTCGAGATCTCCTCCT
TGACCTCTTGTCCTAAAAAAAGTAATCTTTCTCGATAAAGTCGGTTGATTAGGACAAAAAAAATT
CTATCCTTTAGTCCTTTAGGAGCCGTACACGCACCTTTGGATGCATACGGTTCAAAATCAAAATG
AAACGGAGAAAAAAGAATCAATGTGTCGATTCTTGTTCTATTTCT
Right flanking sequence: Indices 74522 -- 75021
AACGTTTAAAAAAAAGAATTTATTGAACTTATTGAAATTGAACTAATCTCTCTCATTGATGTATT
ATTTCATCGATATTCAAATCACGATGCAATTTTCTTGTTCCTGAATGGGCCCTTGCAATTCTTTT
AGGTTCATGTTCTACTCCGGGAAAAGATCTGTCCGAATTTTATTTGCACATATAGGACAAATAAT
CTCAGTACCACTTCTTTTTTTTTCAATTCGTTTCATGTCTTTTCCCAACTCAACTATTTGATGTA
TTCATCATGCTATTCTGTTGGTTATTGGTTGGACGTTTGAAATCACTCTTATAGTAACTCATCTT
ACTTATAGTAATATAGTAAGGATAAGAATCCTTTATAATACAACTTTATAATACAAGTAATAATC
ATACATATATTATATTACCAATTTGGTATTTTCTGAACGGAGCCTGAATACTTTATTTTTATTTT
TCCAAGTGAACCATAAATCCTCCTAATTGATAATATGGATCCCAA
Found at i:74893 original size:13 final size:13
Alignment explanation
Indices: 74877--74902 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
74867 GATAAGAATC
74877 CTTTATAATACAA
1 CTTTATAATACAA
74890 CTTTATAATACAA
1 CTTTATAATACAA
74903 GTAATAATCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.00, T:0.38
Consensus pattern (13 bp):
CTTTATAATACAA
Left flanking sequence: Indices 74377 -- 74876
TTTGGATGCATACGGTTCAAAATCAAAATGAAACGGAGAAAAAAGAATCAATGTGTCGATTCTTG
TTCTATTTCTTTTTTCTTTAACTTAATAGGTTTAAAAAAAAAAACGTTTTTCTTCAACTTAATAG
GTTTAAAAAAAAAAAAACGTTTAAAAAAAAGAATTTATTGAACTTATTGAAATTGAACTAATCTC
TCTCATTGATGTATTATTTCATCGATATTCAAATCACGATGCAATTTTCTTGTTCCTGAATGGGC
CCTTGCAATTCTTTTAGGTTCATGTTCTACTCCGGGAAAAGATCTGTCCGAATTTTATTTGCACA
TATAGGACAAATAATCTCAGTACCACTTCTTTTTTTTTCAATTCGTTTCATGTCTTTTCCCAACT
CAACTATTTGATGTATTCATCATGCTATTCTGTTGGTTATTGGTTGGACGTTTGAAATCACTCTT
ATAGTAACTCATCTTACTTATAGTAATATAGTAAGGATAAGAATC
Right flanking sequence: Indices 74903 -- 75402
GTAATAATCATACATATATTATATTACCAATTTGGTATTTTCTGAACGGAGCCTGAATACTTTAT
TTTTATTTTTCCAAGTGAACCATAAATCCTCCTAATTGATAATATGGATCCCAAAATGCAAATAT
AAATAAATTGATCTAATTACACTTCACGCTCCGAATGATTGATGCTTCCCTCAATACAAGATTTC
TTGGGCGAAACAGAGGATATCTCGATCGGGGGAGAAAACGGGTAAATTCCATATGACTCAATATG
TCTGACAAGTCGCACTATAACTCAACCCAAGTTGCATCTTCCTCTCCGGGATTCCGAAAAGGTAC
TTTTGGAACACCAACGGGCATTAATTTAAAGACAAAATTGAGTACTATACTTCACGTTAATATGG
AAACGTAACAATGGTTTTATCATCTTTATCTCTTTTTCTCTTTATTTTATTTTATACATAGATTT
TTATACATAGATTGAAAGGTTTATATTGAAAGGTTTATAGAGTAA
Found at i:75361 original size:14 final size:14
Alignment explanation
Indices: 75342--75370 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
75332 CTTTATTTTA
75342 TTTTATACATAGAT
1 TTTTATACATAGAT
75356 TTTTATACATAGAT
1 TTTTATACATAGAT
75370 T
1 T
75371 GAAAGGTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (14 bp):
TTTTATACATAGAT
Left flanking sequence: Indices 74842 -- 75341
ATCTTACTTATAGTAATATAGTAAGGATAAGAATCCTTTATAATACAACTTTATAATACAAGTAA
TAATCATACATATATTATATTACCAATTTGGTATTTTCTGAACGGAGCCTGAATACTTTATTTTT
ATTTTTCCAAGTGAACCATAAATCCTCCTAATTGATAATATGGATCCCAAAATGCAAATATAAAT
AAATTGATCTAATTACACTTCACGCTCCGAATGATTGATGCTTCCCTCAATACAAGATTTCTTGG
GCGAAACAGAGGATATCTCGATCGGGGGAGAAAACGGGTAAATTCCATATGACTCAATATGTCTG
ACAAGTCGCACTATAACTCAACCCAAGTTGCATCTTCCTCTCCGGGATTCCGAAAAGGTACTTTT
GGAACACCAACGGGCATTAATTTAAAGACAAAATTGAGTACTATACTTCACGTTAATATGGAAAC
GTAACAATGGTTTTATCATCTTTATCTCTTTTTCTCTTTATTTTA
Right flanking sequence: Indices 75371 -- 75870
GAAAGGTTTATATTGAAAGGTTTATAGAGTAAGACAGAATGAATAAAGATAAAATTTAACTAACG
TATCAATCGTTGGAATGATAAACAAGTATCTATGTTTCCCGAAAGTAGGAGTAATCCTCCCATTG
CGTATTGGTACTTATCGGGTATAGAATAGATCCGCTTCTCTTTGTTCTTACGAACAGAATTTTTA
CCTTATTTTCAATGAAACGGAATAAATATTAACCTTTTCTCATACAGAATCTACTGAAAAGTTAG
GTACATAGTATAGTCTTTTCCAATTCCAATGCGATAAAATAAAGTGACATAGTGTCTAGTTTTTT
TTTTGATAAAGGGGTATTTCCATGGGTTTGCCTTGGTATCGTGTTCATACTGTCGTATTGAATGA
TCCTGGTCGATTACTTTCGGTCCATATAATGCATACAGCCCTAGTTGCTGGTTGGGCCGGTTCGA
TGGCTTTATACGAATTAGCAGTTTTTGATCCCTCTGACCCCGCTC
Found at i:75385 original size:14 final size:14
Alignment explanation
Indices: 75368--75396 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
75358 TTATACATAG
75368 ATTGAAAGGTTTAT
1 ATTGAAAGGTTTAT
75382 ATTGAAAGGTTTAT
1 ATTGAAAGGTTTAT
75396 A
1 A
75397 GAGTAAGACA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (14 bp):
ATTGAAAGGTTTAT
Left flanking sequence: Indices 74868 -- 75367
ATAAGAATCCTTTATAATACAACTTTATAATACAAGTAATAATCATACATATATTATATTACCAA
TTTGGTATTTTCTGAACGGAGCCTGAATACTTTATTTTTATTTTTCCAAGTGAACCATAAATCCT
CCTAATTGATAATATGGATCCCAAAATGCAAATATAAATAAATTGATCTAATTACACTTCACGCT
CCGAATGATTGATGCTTCCCTCAATACAAGATTTCTTGGGCGAAACAGAGGATATCTCGATCGGG
GGAGAAAACGGGTAAATTCCATATGACTCAATATGTCTGACAAGTCGCACTATAACTCAACCCAA
GTTGCATCTTCCTCTCCGGGATTCCGAAAAGGTACTTTTGGAACACCAACGGGCATTAATTTAAA
GACAAAATTGAGTACTATACTTCACGTTAATATGGAAACGTAACAATGGTTTTATCATCTTTATC
TCTTTTTCTCTTTATTTTATTTTATACATAGATTTTTATACATAG
Right flanking sequence: Indices 75397 -- 75896
GAGTAAGACAGAATGAATAAAGATAAAATTTAACTAACGTATCAATCGTTGGAATGATAAACAAG
TATCTATGTTTCCCGAAAGTAGGAGTAATCCTCCCATTGCGTATTGGTACTTATCGGGTATAGAA
TAGATCCGCTTCTCTTTGTTCTTACGAACAGAATTTTTACCTTATTTTCAATGAAACGGAATAAA
TATTAACCTTTTCTCATACAGAATCTACTGAAAAGTTAGGTACATAGTATAGTCTTTTCCAATTC
CAATGCGATAAAATAAAGTGACATAGTGTCTAGTTTTTTTTTTGATAAAGGGGTATTTCCATGGG
TTTGCCTTGGTATCGTGTTCATACTGTCGTATTGAATGATCCTGGTCGATTACTTTCGGTCCATA
TAATGCATACAGCCCTAGTTGCTGGTTGGGCCGGTTCGATGGCTTTATACGAATTAGCAGTTTTT
GATCCCTCTGACCCCGCTCTCGATCCAATGTGGAGACAAGGTATG
Found at i:79872 original size:14 final size:14
Alignment explanation
Indices: 79853--79880 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
79843 ATTGTATTCC
79853 TTATTTGATATAAT
1 TTATTTGATATAAT
79867 TTATTTGATATAAT
1 TTATTTGATATAAT
79881 ATAGTTGAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.00, G:0.07, T:0.57
Consensus pattern (14 bp):
TTATTTGATATAAT
Left flanking sequence: Indices 79353 -- 79852
TTCTTCACGTATTTCGTGTGTACCTTACAGGTGGATTTAAAAAACCCCGCGAATTAACTTGGGTT
ACAGGTGTGGTTTTGGCTGTATTGACCGCATCTTTTGGTGTAACTGGTTATTCCTTACCTCGGGA
CCAAATTGGTTATTGGGCAGTCAAAATTGTGACGGGCGTACCTGAAGCTATTCCTGGAATAGGAT
CACCTTTGGTAGAGTTATTACGTGGAAGTGCTAGTGTGGGCCAATCTACTTTAACTCGTTTTTAT
AGTTTACACACTTTTGTATTGCCTCTTCTTACTGCCGTATTTATGTTAATGCATTTTCCAATGAT
ACGTAAGCAAGGAATTTCTGGTCCTTTATAGAATCATAGATATTTGTAATTGATCATATCATACT
GGCGAGGAACGATAGACAATAATATTTCATCATTGCTAGAAATATGGATTATTGAAAAAGTAAGA
CATGTTATTTGGATATTTTTCTTCAACTTAAAAATATTGTATTCC
Right flanking sequence: Indices 79881 -- 80380
ATAGTTGAAGTAGATTTTCCGAGTATAGGGTGGATTATGGGAGTGTGTGACTTGAACTATTGATT
AGGCCATGCAGATATATTATTTTATCTGCCACGTTGGAATGAATTCACAGCCAAATGTGTCTCCG
CATCCAACCATCATGTAAGCCCCTTATGTACTTATGTAGTAGAGGATAGGCCGGTTCGCTTGAGG
AGAGCCTTTTCCATGATCATACCTGAATGATGTTATGCATGAACAGGCTCCGTAAGATCCCATAG
AATAAAATAAGTGATGTGGCATGATTCAATGTTATGTTTATTACACTTCCTTATTTATAGTATAG
AAATGCATTCATTTCCTCTGCATCGATCCCGATCCATAATACTATCGGAGTGAAATAGGGGATCT
AAGGAAGAACAGAGGCTAGACTTTATTAGTAACAAGTAAATACTTTAGTATGTAAAAAAATCGAG
ATGTTGTGGGGGTAAACACAAATAAAAAGACATAAGACAATCCAA
Found at i:82811 original size:24 final size:24
Alignment explanation
Indices: 82784--82832 Score: 80
Period size: 24 Copynumber: 2.0 Consensus size: 24
82774 TTTGGTATTC
* *
82784 TACGTCCATTCTTACGTGAACCAA
1 TACGCCCATTCCTACGTGAACCAA
82808 TACGCCCATTCCTACGTGAACCAA
1 TACGCCCATTCCTACGTGAACCAA
82832 T
1 T
82833 TCTTGGTATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.33, G:0.12, T:0.27
Consensus pattern (24 bp):
TACGCCCATTCCTACGTGAACCAA
Left flanking sequence: Indices 82284 -- 82783
AAAGACGATTACTATCTATTCTTGATTCAACACACCTCCACTGCAGTGTTCGAGTGGATCCTACT
ACTTCCTCTCGAACCATACTATAATAATACTATTATTAGATCAGATCATTGAATCATTTATTTCT
CTTGAAATCCTTTTTTATTATTTCTACACACGTCTTTTTTTAGGAGGTCGACATCCATTATGTGG
CATAGGTGTTACATCACGTACGAAACTTAGTCGTATACCACTTCTACAAATGGCTCGTAATGCTG
CGTCTCTTCCAAGTCCAGGACCCTTTATCATAACTCCTGCTCGTTGCATACCCTGATCAACTACA
GTACGAATAGCATTTACTGCTGCTGCTTGAGCAGCGTAGGGTGTCCCTCTTCTTGGGCCTTTGAA
TCCAGAAGTACCAGCGGAGGCCCAAGAAACCACTCGACCTCGTACATCTGTAATAGTTACAATAG
TATTGTTCAAACTTGCTTGAACATGAATAATTCCTTTTGGTATTC
Right flanking sequence: Indices 82833 -- 83332
TCTTGGTATAGCTTTTGTCATATTTTATCATCTCATAACTATGAGTCAGAAATATACAGAAAGAA
AAGATACGGAAATATCCATTTCATGTTAAAAGAAATCCCCCTTTTGTTCTTCCTTTATTTTAAAA
AGTTTTTTTTGAAAGGGTTATCCTTGTCTCTGTTTATGTCTCGGATTGGAACAAATCACTATAAT
TCGTCCGCGCCGACGGATCAGTCGGCATTTTTCACAAATTTTACGAACGGAAGCCCGTATTTTCA
TATTTATTATTCCTTACCTTAATTTATTATTCCTTACCTTAATGTTGAATCTATTCCTTGGAAGA
AAATAAGTCTCTTGCATTTTTTTAATTGTATCGTCGTGAAAATGAAAGGAATGCTTAAAAAATTA
TTTAATCGTTCGAATCTTTGTTTCGAAGTCTATAAATTATACGTCCCCTGGTTGAATCATAACGA
CTTACTTCAATTTTGACTCTATCCCCCGGTAGTATCCGTATAAAA
Found at i:83119 original size:20 final size:20
Alignment explanation
Indices: 83094--83135 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
83084 GTATTTTCAT
83094 ATTTATTATTCCTTACCTTA
1 ATTTATTATTCCTTACCTTA
83114 ATTTATTATTCCTTACCTTA
1 ATTTATTATTCCTTACCTTA
83134 AT
1 AT
83136 GTTGAATCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.26, C:0.19, G:0.00, T:0.55
Consensus pattern (20 bp):
ATTTATTATTCCTTACCTTA
Left flanking sequence: Indices 82594 -- 83093
CCCTGATCAACTACAGTACGAATAGCATTTACTGCTGCTGCTTGAGCAGCGTAGGGTGTCCCTCT
TCTTGGGCCTTTGAATCCAGAAGTACCAGCGGAGGCCCAAGAAACCACTCGACCTCGTACATCTG
TAATAGTTACAATAGTATTGTTCAAACTTGCTTGAACATGAATAATTCCTTTTGGTATTCTACGT
CCATTCTTACGTGAACCAATACGCCCATTCCTACGTGAACCAATTCTTGGTATAGCTTTTGTCAT
ATTTTATCATCTCATAACTATGAGTCAGAAATATACAGAAAGAAAAGATACGGAAATATCCATTT
CATGTTAAAAGAAATCCCCCTTTTGTTCTTCCTTTATTTTAAAAAGTTTTTTTTGAAAGGGTTAT
CCTTGTCTCTGTTTATGTCTCGGATTGGAACAAATCACTATAATTCGTCCGCGCCGACGGATCAG
TCGGCATTTTTCACAAATTTTACGAACGGAAGCCCGTATTTTCAT
Right flanking sequence: Indices 83136 -- 83635
GTTGAATCTATTCCTTGGAAGAAAATAAGTCTCTTGCATTTTTTTAATTGTATCGTCGTGAAAAT
GAAAGGAATGCTTAAAAAATTATTTAATCGTTCGAATCTTTGTTTCGAAGTCTATAAATTATACG
TCCCCTGGTTGAATCATAACGACTTACTTCAATTTTGACTCTATCCCCCGGTAGTATCCGTATAA
AACTACGGCGGATCCTTCCCGAAATATAACCTAGAATTACATCTTCATTATCTAAGCGGACCCGG
AACATACCGTTGGGAAGTGATTCAGTAATTAAACCTTCATGAATCAATTTTTGTTCTTTCATTCC
AGGTAAGCTCCTTGAAATATCAACTAATGGAGGAAAAGTTATATAATTCACTTTTCTTCTCTATA
AAATAGGAAGTTAGAGATAAAATTAGGATACCGGAGGAGTAAGATCACCATATATATAACAAAAG
TTCGCCTCCAATTTTTTCTCGTCGAGCTTCTCGATCCGTCATTAT
Found at i:84062 original size:22 final size:23
Alignment explanation
Indices: 84024--84074 Score: 77
Period size: 22 Copynumber: 2.2 Consensus size: 23
84014 ATGTTATCTT
84024 TTTTGTTTGTTTTATTTTCTTTAA
1 TTTT-TTTGTTTTATTTTCTTTAA
*
84048 TTTTTTTG-TTTATTTTGTTTAA
1 TTTTTTTGTTTTATTTTCTTTAA
84070 TTTTT
1 TTTTT
84075 AATATTATAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
22 18 0.69
23 4 0.15
24 4 0.15
ACGTcount: A:0.12, C:0.02, G:0.08, T:0.78
Consensus pattern (23 bp):
TTTTTTTGTTTTATTTTCTTTAA
Left flanking sequence: Indices 83524 -- 84023
TAAAATAGGAAGTTAGAGATAAAATTAGGATACCGGAGGAGTAAGATCACCATATATATAACAAA
AGTTCGCCTCCAATTTTTTCTCGTCGAGCTTCTCGATCCGTCATTATACCTCGAGAAGTGGAAAG
AATTACAATTCCTATTCCACCTAAAATCTTAGGAATTTGTTGGTAGTTGGAATAAATTCGTAAAC
CAGGTCGGCTGATACGCTTTAAAATAGTTTTATGTATTCTTTTCCTAGTCTTTTTATGTCGCAGA
GTTAAAACCAAGAAATTTTTGTTACCTTCTTGATGTTTCCGAACGTTTTCAATAAAACCTTCTCG
TAGAAGTATTTTCACAATATTTTCGGTAATATTAGTAGATGCTATTCGAATCGTTCCTTTTTTAT
CCATGTCAGCATTTCTTATAGAAGTTATTATATTGGAAATAGTGTCCCTACCCATGGCGAACTAT
AATTATTGGTGCCTTTTAATTTTGATATAATTAACATGTTATCTT
Right flanking sequence: Indices 84075 -- 84574
AATATTATAATATAAAAAAAAGTATATGCGTGAGACACCATCTACTACTCCACTAAATTTGATCT
ATTTTAGATGTTCTGATATATCATAGTCTCATTTAGTATTATTTATAATACCTCGGGAGCCAATG
AAACTATTTTAGTAAAATTCAACTGTCTCAATTCCCGAGCGATCGCACCAAAGACTCGAGTTCCT
TTTGGATTTCCTTCTTGATCAATGACAACCGCAGCATTGTCATCATATCGTATTATGATACCGTT
GTCACGTTTGAGTTCTTTACAAGTACGTACAATTACAGCTCTAATTACTTCTGATCTTTCTAGTG
GCATATTTGGCACTGCTTCTTTAATTACAGCAACAATAACGTCACCAATATGAGCATATCTATAA
TTACCAGCTCCTATGATTCGAATACACATCAATTCTCGGGCTCCGCTGTTATCCGCTACATTCAA
AAGGGTTTGAGGTTGAATCATATCATTTTATTGGAATCTGTTATT
Found at i:85687 original size:22 final size:21
Alignment explanation
Indices: 85661--85717 Score: 71
Period size: 20 Copynumber: 2.6 Consensus size: 21
85651 CTCGAGGCTC
85661 TTTATTATTTATATCACTTTATTT
1 TTTATTATTTATAT-A-TTTA-TT
85685 TATTATTATTT-TATATTTATT
1 T-TTATTATTTATATATTTATT
85706 TTTATTATTTAT
1 TTTATTATTTAT
85718 TCAGTTTTGA
Statistics
Matches: 31, Mismatches: 0, Indels: 7
0.82 0.00 0.18
Matches are distributed among these distances:
20 9 0.29
21 4 0.13
22 4 0.13
23 1 0.03
24 4 0.13
25 9 0.29
ACGTcount: A:0.26, C:0.04, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTATTATTTATATATTTATT
Left flanking sequence: Indices 85161 -- 85660
AAAGATTCACTAATATGACATATTACAGATACACATGGAAAAAATAATCCAATAAGACATTTATC
AATATTGAATTTGTTATATAGGAAGATGTATGTATGGGATATACAGATAGAATGTTTCTATTATG
CATATTTATGGATTATAGATAATATAGATAATGTTTTTTTTATAATGATCCTTATTTTTACTCTT
CTCAAATGATGCCAAAATATTGTAATGTAATCTAAAGTTTCGCGGGCGAATATTGACTCTTTGCT
TTTTGTTATTTCTAGGTCAATCCATGACTTCTCGAAATAAATTAATTTTTTCTCGGTTCGTTCCG
CCATCCCACCCAATGAATTATTCGGATTTGTTTTCAGTAGAATCCTATGCAATTACAGGTTTCAT
CGTTCCTATAGCTTCTCTATTAATGGTTAAGTCTGAACTCTGCAATGGAGCTCCCCAAAAAAATT
TCTCTTCTCGAGTCAATCTACTTAGTTTTTATTAACTCGAGGCTC
Right flanking sequence: Indices 85718 -- 86217
TCAGTTTTGATGCTTTATTACATTGCCTTTTATGAGGTAATTCATAGACCATACATATTGGAATC
ATATATCATTGATATTTTTGTTCTTTCTTTCTCTCATCCTTTCATTTATCTACATCTCTTTATTT
TTGCTTCACAACCCAACCCATAAATAAGATTATTTCCATAAATAATATTTTTTATAGAAAAGATT
TTAGTTGCAGTTGCTGCAACTATATGATTGATCCACTCATCTCATATAGTGACTGTTTCTTGGGA
TATTGATATTACGAAGCAATAAGTTAGTTATTAGTTTTTTTATTATACTTATTATTATACTTATT
AAGTTAAGTTTAAGTAACTTATTAAGTTTAAGTAGGGGTCAGTCTTTTTTTTTAATCCCAACTCT
TAACTCTAAATAAAAATTAACGAGTCACACACTAAGCATAGCAATTCTAACAAATGGTCAATCGA
ATTTTTATTTAACCTTATAGAATTGGAATTGCTCATTTTTGTTTG
Found at i:85705 original size:17 final size:16
Alignment explanation
Indices: 85678--85711 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
85668 TTTATATCAC
85678 TTTATTTTATTATTAT
1 TTTATTTTATTATTAT
*
85694 TTTATATTTATTTTTAT
1 TTTAT-TTTATTATTAT
85711 T
1 T
85712 ATTTATTCAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTTATTTTATTATTAT
Left flanking sequence: Indices 85178 -- 85677
ACATATTACAGATACACATGGAAAAAATAATCCAATAAGACATTTATCAATATTGAATTTGTTAT
ATAGGAAGATGTATGTATGGGATATACAGATAGAATGTTTCTATTATGCATATTTATGGATTATA
GATAATATAGATAATGTTTTTTTTATAATGATCCTTATTTTTACTCTTCTCAAATGATGCCAAAA
TATTGTAATGTAATCTAAAGTTTCGCGGGCGAATATTGACTCTTTGCTTTTTGTTATTTCTAGGT
CAATCCATGACTTCTCGAAATAAATTAATTTTTTCTCGGTTCGTTCCGCCATCCCACCCAATGAA
TTATTCGGATTTGTTTTCAGTAGAATCCTATGCAATTACAGGTTTCATCGTTCCTATAGCTTCTC
TATTAATGGTTAAGTCTGAACTCTGCAATGGAGCTCCCCAAAAAAATTTCTCTTCTCGAGTCAAT
CTACTTAGTTTTTATTAACTCGAGGCTCTTTATTATTTATATCAC
Right flanking sequence: Indices 85712 -- 86211
ATTTATTCAGTTTTGATGCTTTATTACATTGCCTTTTATGAGGTAATTCATAGACCATACATATT
GGAATCATATATCATTGATATTTTTGTTCTTTCTTTCTCTCATCCTTTCATTTATCTACATCTCT
TTATTTTTGCTTCACAACCCAACCCATAAATAAGATTATTTCCATAAATAATATTTTTTATAGAA
AAGATTTTAGTTGCAGTTGCTGCAACTATATGATTGATCCACTCATCTCATATAGTGACTGTTTC
TTGGGATATTGATATTACGAAGCAATAAGTTAGTTATTAGTTTTTTTATTATACTTATTATTATA
CTTATTAAGTTAAGTTTAAGTAACTTATTAAGTTTAAGTAGGGGTCAGTCTTTTTTTTTAATCCC
AACTCTTAACTCTAAATAAAAATTAACGAGTCACACACTAAGCATAGCAATTCTAACAAATGGTC
AATCGAATTTTTATTTAACCTTATAGAATTGGAATTGCTCATTTT
Found at i:85710 original size:12 final size:13
Alignment explanation
Indices: 85678--85718 Score: 54
Period size: 11 Copynumber: 3.5 Consensus size: 13
85668 TTTATATCAC
85678 TTTA-TTTTATTA
1 TTTATTTTTATTA
85690 -TTA-TTTTA-TA
1 TTTATTTTTATTA
85700 TTTATTTTTATTA
1 TTTATTTTTATTA
85713 TTTATT
1 TTTATT
85719 CAGTTTTGAT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
10 2 0.08
11 11 0.42
12 5 0.19
13 8 0.31
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTATTTTTATTA
Left flanking sequence: Indices 85178 -- 85677
ACATATTACAGATACACATGGAAAAAATAATCCAATAAGACATTTATCAATATTGAATTTGTTAT
ATAGGAAGATGTATGTATGGGATATACAGATAGAATGTTTCTATTATGCATATTTATGGATTATA
GATAATATAGATAATGTTTTTTTTATAATGATCCTTATTTTTACTCTTCTCAAATGATGCCAAAA
TATTGTAATGTAATCTAAAGTTTCGCGGGCGAATATTGACTCTTTGCTTTTTGTTATTTCTAGGT
CAATCCATGACTTCTCGAAATAAATTAATTTTTTCTCGGTTCGTTCCGCCATCCCACCCAATGAA
TTATTCGGATTTGTTTTCAGTAGAATCCTATGCAATTACAGGTTTCATCGTTCCTATAGCTTCTC
TATTAATGGTTAAGTCTGAACTCTGCAATGGAGCTCCCCAAAAAAATTTCTCTTCTCGAGTCAAT
CTACTTAGTTTTTATTAACTCGAGGCTCTTTATTATTTATATCAC
Right flanking sequence: Indices 85719 -- 86218
CAGTTTTGATGCTTTATTACATTGCCTTTTATGAGGTAATTCATAGACCATACATATTGGAATCA
TATATCATTGATATTTTTGTTCTTTCTTTCTCTCATCCTTTCATTTATCTACATCTCTTTATTTT
TGCTTCACAACCCAACCCATAAATAAGATTATTTCCATAAATAATATTTTTTATAGAAAAGATTT
TAGTTGCAGTTGCTGCAACTATATGATTGATCCACTCATCTCATATAGTGACTGTTTCTTGGGAT
ATTGATATTACGAAGCAATAAGTTAGTTATTAGTTTTTTTATTATACTTATTATTATACTTATTA
AGTTAAGTTTAAGTAACTTATTAAGTTTAAGTAGGGGTCAGTCTTTTTTTTTAATCCCAACTCTT
AACTCTAAATAAAAATTAACGAGTCACACACTAAGCATAGCAATTCTAACAAATGGTCAATCGAA
TTTTTATTTAACCTTATAGAATTGGAATTGCTCATTTTTGTTTGA
Found at i:86032 original size:12 final size:12
Alignment explanation
Indices: 86017--86043 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
86007 ATTAGTTTTT
86017 TTATTATACTTA
1 TTATTATACTTA
86029 TTATTATACTTA
1 TTATTATACTTA
86041 TTA
1 TTA
86044 AGTTAAGTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.33, C:0.07, G:0.00, T:0.59
Consensus pattern (12 bp):
TTATTATACTTA
Left flanking sequence: Indices 85517 -- 86016
TTTCAGTAGAATCCTATGCAATTACAGGTTTCATCGTTCCTATAGCTTCTCTATTAATGGTTAAG
TCTGAACTCTGCAATGGAGCTCCCCAAAAAAATTTCTCTTCTCGAGTCAATCTACTTAGTTTTTA
TTAACTCGAGGCTCTTTATTATTTATATCACTTTATTTTATTATTATTTTATATTTATTTTTATT
ATTTATTCAGTTTTGATGCTTTATTACATTGCCTTTTATGAGGTAATTCATAGACCATACATATT
GGAATCATATATCATTGATATTTTTGTTCTTTCTTTCTCTCATCCTTTCATTTATCTACATCTCT
TTATTTTTGCTTCACAACCCAACCCATAAATAAGATTATTTCCATAAATAATATTTTTTATAGAA
AAGATTTTAGTTGCAGTTGCTGCAACTATATGATTGATCCACTCATCTCATATAGTGACTGTTTC
TTGGGATATTGATATTACGAAGCAATAAGTTAGTTATTAGTTTTT
Right flanking sequence: Indices 86044 -- 86543
AGTTAAGTTTAAGTAACTTATTAAGTTTAAGTAGGGGTCAGTCTTTTTTTTTAATCCCAACTCTT
AACTCTAAATAAAAATTAACGAGTCACACACTAAGCATAGCAATTCTAACAAATGGTCAATCGAA
TTTTTATTTAACCTTATAGAATTGGAATTGCTCATTTTTGTTTGATTTAATGGAAAAAGAATGAA
CAAGTTTGTGATTTTTTGTTCTATCACTGAATAGAAAGGAAAGACAAATAAAAGTCTATTATTGC
TCCTCCCAAAATATCCAAATTTTGATGCCTAATACTCCATAAATAGTTCGAATTGTATAGGAACA
ATGATCAATTTTAGCGCGAATTGTTTGTAAGGGAACTCTCCCCTCTCTGATCCATTCGACACGTG
CAATTTCTTTTCCGTTGATACGCCCTGCAATTTGCACTTGAATTCCTTTTGTATCTGTTTGTTCA
GCTAATTCAATAGCTTTTTTCATTGCCTTTCGGAATGAAACTCTA
Found at i:90209 original size:50 final size:50
Alignment explanation
Indices: 90134--90373 Score: 352
Period size: 50 Copynumber: 4.9 Consensus size: 50
90124 ATTCAGCCAT
90134 GGATGCTTAACTTAACACATCATATATTGTAAATAAACAAATTCCAATTG
1 GGATGCTTAACTTAACACATCATATATTGTAAATAAACAAATTCCAATTG
90184 GGATGCTTAACTTAACACATCATATATTGTAAATAAACAAATTCCAATTG
1 GGATGCTTAACTTAACACATCATATATTGTAAATAAACAAATTCCAATTG
*** * *
90234 GGATGCTTAACTTAACACATC--AT-TTG-AAATTTATTTACA-GCC-A-T-
1 GGATGCTTAACTTAACACATCATATATTGTAAA--TAAACAAATTCCAATTG
90278 GGATGCTTAACTTAACACATCATATATTGTAAATAAACAAATTCCAATTG
1 GGATGCTTAACTTAACACATCATATATTGTAAATAAACAAATTCCAATTG
*
90328 GGATGCTTAACTTAACACATCATATATCGTAAATAAACAAATTCCA
1 GGATGCTTAACTTAACACATCATATATTGTAAATAAACAAATTCCA
90374 GTTCAAATAC
Statistics
Matches: 169, Mismatches: 11, Indels: 20
0.85 0.05 0.10
Matches are distributed among these distances:
44 21 0.12
45 1 0.01
46 10 0.06
47 10 0.06
48 10 0.06
49 1 0.01
50 116 0.69
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.32
Consensus pattern (50 bp):
GGATGCTTAACTTAACACATCATATATTGTAAATAAACAAATTCCAATTG
Left flanking sequence: Indices 89634 -- 90133
TATAAGAGGTGGAATAGAATAACCCGATTCAAGCGTAATGATCATACGTCTGTAATGCATTGTAT
GTCCCATAATAGGTCCCCTTCTTCTACCCTTTCCCGGGAGTCGATGACTATTCATAGCTATTACC
TTGACACCAAAGAAGAGTTCGACCCAATGCTTTATTTCTGTCCTAGTTGATCCTGATTCGACATT
AGAAGTATATTGATTGTTCCCCAATAACCGAATACTTTTTTCTGTAAATACTGCATATTTGATTC
CATCCATAAATCCATTTTCTTCCCTATGAGTTCCAGTATCGATAAGAATTCTAGTTCTTACTGTT
CATATGTTATGGTATGAATATACCATACCAATTCGTTATGGATGGATGATGAGATTCCATTGATA
CAGAGCCAATTCCAATAGACTTATTAAACGTTCCCATTGGCGTGCATCCAGCAGGAATTGAACCT
ACGAATTTACCAATTATGAGTTGGGCGCTTTAACCATTCAGCCAT
Right flanking sequence: Indices 90374 -- 90873
GTTCAAATACAATCTTCGCCGGAGGAGGTCTAAATATCAATGAAGAGACATCAATTCAAATCCTG
GATCGTCGAATTGAGAGAGATATTGAGAGAGATCAAGAATTCTCACTATTTCTTAGATTCATGGA
TCAAATTCAATTCAGTGGGATCTTTCACTCACATTTTTTTCCATCAAGAACGCTTTATGAAACTT
TTTGACCCCCGAATTTGGAGTATCCTACTTTCACGCGATTCGCAGGGTTCAACAAGCAATCGATA
TTTCATGATCAAAGGTGTAGTACTGCTTGTAGTAGCGGTCCTTATATCTCGTATTAACAATCGAA
AGATGGTCGAAAGAAAAAATCTCTATTTGATGGGGCTTCTTCCTATACCTATGAATTCCATTGGA
CCTGGAAATGAGACATTGGAAGAATCTTTTTGGTCTTCCAATATCAATAGGTTGATTGTTTCGCT
CCTGTATCTTCCAAAAGGGAAAAAGCTTTCTGAGAGTTGTTTCAT
Found at i:92982 original size:42 final size:44
Alignment explanation
Indices: 92908--92990 Score: 134
Period size: 42 Copynumber: 1.9 Consensus size: 44
92898 ACAAACAAGA
*
92908 TTTGTCTAAGTCACTTCGTTTCTTTTTGTCCAAGTCACTTCTCTT
1 TTTGTCCAAGTCACTTC-TTTCTTTTTGTCCAAGTCACTTCTCTT
92953 TTTGTCCAAGTCAC-T-TTTCTTTTTGTCCAAGTCACTTC
1 TTTGTCCAAGTCACTTCTTTCTTTTTGTCCAAGTCACTTC
92991 CCCTTTTCTT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
42 23 0.62
44 1 0.03
45 13 0.35
ACGTcount: A:0.14, C:0.25, G:0.11, T:0.49
Consensus pattern (44 bp):
TTTGTCCAAGTCACTTCTTTCTTTTTGTCCAAGTCACTTCTCTT
Left flanking sequence: Indices 92408 -- 92907
AAATCGGCCCGGATCTACTGCGGGAATGATTTGGAAGATCCAAAACGAAAAACAGCGGTATTTGC
TAGCAACAACATAATGGAGGCAGTCAATCAATATAGATTGATCCGAAATCTGATTCAAATCTATG
GGTACATAAGAAATGTATCTAATCGATTCTTTTTAATGAATAGATCCGATCACAACTTCGAATAT
GGAATTCAAAGGGATCAAATAGGAAATGATACTCTGAATCATATAACTATAATGAAATATACGAT
CAACCAACATTTATCGAATTTGAAAAAGAGTCAGAAGAAATGGTTTGATCCTCTTATTTCTCGAA
CCGGGAGATCCATGAATCGGGATCCTGATGTATATAGATACAAATGGTCCAATGGGAGCAAGAAT
TTCCAGGAACATTTCCTTTCTGAACAGAAGAACCATTTTCAAGTAGTGTTCGATCGGTTACGTAT
TAATCAATATTCGATTGATTGGTCCGAGGTTATAGACAAACAAGA
Right flanking sequence: Indices 92991 -- 93490
CCCTTTTCTTTGTGAGTATCGGGAATACCCCCATTCATAGGTCCGAGATCCACATCTATGAATTG
AAAGGTCCGAATGATCAACTCCGCAATCAGTTGTTAGAATCAATAGGTGTTCAAATCGTTCATTT
GAATAAATTGAAACCCTTCTTATTGGATGATCATGATACTTCCAAAAGACCGAAATCCTTGATCA
ATGGAGGAACAAGATTACCATTTTGCTTCAAAAAGATACCAAAGTGGGTGATTGACTCATTCCAT
ACTAGAAATAATCGCAGGAAATCCTTTGATAACACGGATTCCTATTTATCAATGATATTCCATGA
TCGAGACAATTGGCTGAATCCCGTGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATA
AAGCAAATCCACTTCGATTCTTGAATGATCCAAATCGCTTCTGGTTCTATTGTAACAAAGGATTC
CCTTTTTATGTGGAAAAGACCCGTATCAATAATTATGATCCTACA
Found at i:92997 original size:21 final size:21
Alignment explanation
Indices: 92908--92990 Score: 121
Period size: 21 Copynumber: 3.8 Consensus size: 21
92898 ACAAACAAGA
*
92908 TTTGTCTAAGTCACTTCGTTTCTT
1 TTTGTCCAAGTCACTTC---TCTT
92932 TTTGTCCAAGTCACTTCTCTT
1 TTTGTCCAAGTCACTTCTCTT
*
92953 TTTGTCCAAGTCACTTTTCTT
1 TTTGTCCAAGTCACTTCTCTT
92974 TTTGTCCAAGTCACTTC
1 TTTGTCCAAGTCACTTC
92991 CCCTTTTCTT
Statistics
Matches: 56, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
21 40 0.71
24 16 0.29
ACGTcount: A:0.14, C:0.25, G:0.11, T:0.49
Consensus pattern (21 bp):
TTTGTCCAAGTCACTTCTCTT
Left flanking sequence: Indices 92408 -- 92907
AAATCGGCCCGGATCTACTGCGGGAATGATTTGGAAGATCCAAAACGAAAAACAGCGGTATTTGC
TAGCAACAACATAATGGAGGCAGTCAATCAATATAGATTGATCCGAAATCTGATTCAAATCTATG
GGTACATAAGAAATGTATCTAATCGATTCTTTTTAATGAATAGATCCGATCACAACTTCGAATAT
GGAATTCAAAGGGATCAAATAGGAAATGATACTCTGAATCATATAACTATAATGAAATATACGAT
CAACCAACATTTATCGAATTTGAAAAAGAGTCAGAAGAAATGGTTTGATCCTCTTATTTCTCGAA
CCGGGAGATCCATGAATCGGGATCCTGATGTATATAGATACAAATGGTCCAATGGGAGCAAGAAT
TTCCAGGAACATTTCCTTTCTGAACAGAAGAACCATTTTCAAGTAGTGTTCGATCGGTTACGTAT
TAATCAATATTCGATTGATTGGTCCGAGGTTATAGACAAACAAGA
Right flanking sequence: Indices 92991 -- 93490
CCCTTTTCTTTGTGAGTATCGGGAATACCCCCATTCATAGGTCCGAGATCCACATCTATGAATTG
AAAGGTCCGAATGATCAACTCCGCAATCAGTTGTTAGAATCAATAGGTGTTCAAATCGTTCATTT
GAATAAATTGAAACCCTTCTTATTGGATGATCATGATACTTCCAAAAGACCGAAATCCTTGATCA
ATGGAGGAACAAGATTACCATTTTGCTTCAAAAAGATACCAAAGTGGGTGATTGACTCATTCCAT
ACTAGAAATAATCGCAGGAAATCCTTTGATAACACGGATTCCTATTTATCAATGATATTCCATGA
TCGAGACAATTGGCTGAATCCCGTGAAACCATTTCATAGAAGTTCATTGATATCTTCTTTTTATA
AAGCAAATCCACTTCGATTCTTGAATGATCCAAATCGCTTCTGGTTCTATTGTAACAAAGGATTC
CCTTTTTATGTGGAAAAGACCCGTATCAATAATTATGATCCTACA
Found at i:94264 original size:21 final size:21
Alignment explanation
Indices: 94234--94276 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
94224 GGACTCTGAC
94234 TCTGAAAAGTAAGATTTCGAG
1 TCTGAAAAGTAAGATTTCGAG
* *
94255 TCTGATAAGTGAGATTTCGAG
1 TCTGAAAAGTAAGATTTCGAG
94276 T
1 T
94277 AAGTGTTTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.33
Consensus pattern (21 bp):
TCTGAAAAGTAAGATTTCGAG
Left flanking sequence: Indices 93734 -- 94233
ATTTATACAACACCTCTAACAGAGGAACAAATAGTTAATTTTGAAAGAACTTATTGTCAGCCTCT
TTCAGATATGAATCTATCTGATTCAGAAGGGAAGAACTTGCATGAGTATCTCAGTTTCAATTCAA
ACATGGATTTGATTCACACTCCATGTTCTGAGAAGGATTTCCCATCTGGAAAGAGGAAAAAAAAA
CGGAGTCTTTCTCTAAAGAAATGCGTTGAGAAAGGGCAGATGTATAGAACCTTTCAACGAGATAG
TGCTCTTTTCAATCTCTCAAAATGGAATCTCTTCCAAACATATATGCCATGGTTCCTTACTTCGA
CAGGGTGGAAATATCTAAATTTCACCACCCTTTTAGAGATTTTTTCAGAACCATTGCCGATACTA
AGGATACTAAGTAGCAGGCACAAATTTGTATCCGTTTTGAGAGATATTATGCATGTATCAGATAT
ATCATGGCCAATTCCTCAGAAGATTCTTCCACAATGGACTCTGAC
Right flanking sequence: Indices 94277 -- 94776
AAGTGTTTCCAGAATCTCCTTCTGTCCGAAGAAACGATTCATCGAAATAATGAGTCACCCGTTCC
ATTGATATGGACACATCTGAGATTAACAAATGCTCGGGAGTTCCTCTATTCAATCCTTTTCCTTC
TTCTTGTTGCTGGATATCTCGTTCGCATACATCTTCTCTTTGTTTCCCGAGCCTCTAGTGAGTTA
CAGACAGAGTTAGAAAAGATCAAATCTTTGATGATTCCATCATACATGATTGAGTTGCGAAAACT
TTTGGATAGGTATCCTACATCTGAATCTGAACTGAATTCTTTCTGGTTAAAGAATCTCTTTCTAG
TTGCTCTGGAACAATTAGGAGATTTTCTGGAAGAAATACGGGTTTCTGCTTCTGGTGGCAACATG
CTATTGGTTGGTGGTTCCGCTTATGGGGTCAAATCAATACGTTCTAAGAAGAAATATTTGAATAT
CAATCTCATCGATCTCAGAAGTATCATACAAAATCCCATCAATCG
Found at i:95455 original size:24 final size:24
Alignment explanation
Indices: 95428--95475 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
95418 GTGATAGTGA
* *
95428 CGATAGTGATTATCGTGACGATAT
1 CGATAGTGATGATAGTGACGATAT
*
95452 CGATATTGATGATAGTGACGATAT
1 CGATAGTGATGATAGTGACGATAT
95476 TGATGATGAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.31, C:0.10, G:0.25, T:0.33
Consensus pattern (24 bp):
CGATAGTGATGATAGTGACGATAT
Left flanking sequence: Indices 94928 -- 95427
AGAGAATTCTTGGTTCAGTTCTCCACCTTAACGACCGAAAAAGAAAAAAGGATTGATCAAATTCT
ATTGAGTCTGACTCATAGTGATCATTTATCAAAGAATGACTCTGGTTATCAAATGATTGAACAAC
CGGGATCAGTTTACTTACGATACTTAGTTGACATTCATAAAAAGTATCTAATGAATTATGAGTTC
AATAGATCCTGTTTAGCAGAAAGACGGATATTCCTTGCTCATTATCAGACAATCACTTATTCACA
AACCCCGTGTGGGGCTAATAGTTTTCATTTCCCATCTCATGGAAAACCCTTCTCGCTCCGTTTAG
CCCTATCCCCTTCTAGGGGTATTTTAGTGATAGGTTCTATAGGAACTGGACGATCCTATTTGGTC
AAATACCTAGCGACAAACTCCCATGTTCCTTTCATTACGATATTTCCGAACAACTTTCCGTATTC
GTATTACAAGCCTGAAGGTTTTTTTATTGATAATAGTGATAGTGA
Right flanking sequence: Indices 95476 -- 95975
TGATGATGACCTTGATCTTGATACGGAGCTGCTAGATATGACGAATGTGCTAACTATGGATATGC
CGCCGAGTATATATGGATTTTATATCGATATCACCTTTCGATTCGCATTAGCAAGAGCAATGTCT
CCTTGCATAATATGGATTCCAAACATTCATGATCTGTATGTGAATTACAGATCCTTCGGTCTATT
ACAGAACTATCTCTCCAGAGATTGTGAAAGATATTCCACTAGAAATATTCTTGTTATTGGTTCGA
CTCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATTAAATACATGCATTAAG
ATACGAAGGCTTCTTATTCAACAACAACGAAAGCACTTTTTCATTCTTTCATATACTAAAGGGTT
TCACTTGGAAAAGAAAATGTTCCATACTAACGGATTCGGGTCCATAACCATGGGTTCCAATGCAC
GAGATCTTGCAGCACTTATCAATGAGGCCCTATCCATTAGTATTA
Found at i:103995 original size:23 final size:23
Alignment explanation
Indices: 103969--104016 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
103959 GTAGGACATG
* *
103969 TATTTCTATTACTATGAAATTAA
1 TATTTCTATAACTACGAAATTAA
103992 TATTTCTATAACTACGAAATTAA
1 TATTTCTATAACTACGAAATTAA
104015 TA
1 TA
104017 AATGAAAATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (23 bp):
TATTTCTATAACTACGAAATTAA
Left flanking sequence: Indices 103469 -- 103968
TATCCATGCGGTTATGCACTCTTCAAATAGGAATTCATTTTCTGAAAGATCCTGGCTTTCGTGCT
TTGGTGAGTCGTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGAATATCCATATGATCCG
ATCGATTGCGTAAGGCCCGCGGTAGCAATGGAACTGGGGAAAGTATACAGAAAAGACAGTTTTTT
CTATTATATTTAGTATTAGTTAGCGATCCCGGTTCGGTGAGTCCTTTCTTCCGTGATGAACTGTT
GGCATCAGTCCTACATTTTGTCTCTGTGGACCGAGGAGAAAGGGGGTTCAGCGGGAAGAGGGTTG
TACCATGAGAGAAGCAAAGAGGTCAACCTGCTTCAAATATACAACATAGATTCCGGCAATGCAAT
GGAGTTGGATCCTCGTGTCGATCCGAATGAATCAGTCTTTCCACAGAGGTAAATCTTTGCCTGCT
AGGCAAGAGGATAGTAAGTTACAAATTCTGTCTCGGTAGGACATG
Right flanking sequence: Indices 104017 -- 104516
AATGAAAATGAAGTAGTTAATGGTGGGGTTACCTTTATCCTTTTTCTTGTATGTATTCCTAAGAA
AAGGAATTTGTCCATTTTCTTTTTCGAGGTCTCAAAAAAGGGTGTGGAAACACATAGGAACTCTT
GAATGGAAATTGAAAAGGAATGTAGCTCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCGCAAGA
AGAAGGGGTGATCCATATCATCTTGACTTGTTGACTTGGTTCTGCTTCCCCTCTTTTTTTAACAA
TACCGAGTCGGGTTCTTCTCCTACCAGTATCGAATAGAACATGCTGAACAAAATCTTCTTCATGT
AAAACCTGCTCGATTTAGATCGGGAAAATCGTACGATGAAACCATGTGCTATGGCTCGAATCCGT
AGTCAATCCTATTTCCGATAGGAGCAGTTGACAATTGAATCCAATTTTTCCCATTATTTTACTAT
CTATAATAGTAATAGTGCGAAAAGAAGGCCCGTGTTCAGGAATAG
Found at i:115189 original size:21 final size:21
Alignment explanation
Indices: 115163--115204 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
115153 TACAACCAAT
*
115163 GGAGAAGAAATCATTGAAGAA
1 GGAGAAGAAATCATTAAAGAA
*
115184 GGAGAAGAAATCCTTAAAGAA
1 GGAGAAGAAATCATTAAAGAA
115205 AAAATCATTC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.52, C:0.07, G:0.26, T:0.14
Consensus pattern (21 bp):
GGAGAAGAAATCATTAAAGAA
Left flanking sequence: Indices 114663 -- 115162
AGTACAACTTGAGTAATGAATTAATAAGTAGAATAAAAATTATAGAAAAAGAAAAAGTATCTCTT
ACTCTAGATATACTAGAAAAAAGGACCAGATTATGCAATGATGAGAATAAACAAGAATACTTGCC
AAAAGCATATGATCCTCTTTTGAATGGCGCATATCGTGGAAAAATAAACAAATTCTATTCACATA
CAACCATGAATCATTTAATTACTTCGAAAGAAAATTCCACGAAAATAGTTTGGATAAATAAGCTT
CATGGGCTATTTTCGATTTCTAATAATTACCAAGAATTTGAACATGAAAAAAATCCACTTAATGA
AAAATCACCATGGAATTATATTATTAATTCGTTAACGTCAATTGATCAATTATCTTTTGAGTACA
TACCCAATTCTCATTTGAAAAAATCTTCTTTATTGGAAGAAGAAATAAAAAGAAATTCAGAAAAT
AAAGCAAAATCTTTGAAATCCGTATTCGATATAATTACAACCAAT
Right flanking sequence: Indices 115205 -- 115704
AAAATCATTCAAAAAATTCCTCAACGGTTATACAAACTAACTGAAGAGTTAGAAGCACTAGCACA
GGATGAAGATGAAGAAGATGAACATGAGCAACTAATGAAACAAGATCAGGAAATTCGTACAAGAA
AAGCCAGACGAGTGGTGATTTATACTGACTACAGCGTGAATCCCGAGACTAACGATGATGAAATA
AACGAGTTGGCTTTGATACGTTACTCACAACAACCTGATTTTCGTCGAGGTCTAATCAAAGGATC
CTTACGCGCTCAAAGACGTAAAACAGTTATTTGGAACACATTCCAAGCATATGTAAATTCTCCGC
TTTTTTTTGATCGAGTAGAAAACATATTTTTTTTTTCTCTTTTAAACAAGATCGATCAAAATATT
AAGTCTATTTTTAGGAATTTTGCGAAGAAAAAACCAAAAACGGAATTAAAAATTGACGATTTTGA
GAAAGAAAAGATGAAGAAAACTCTGAAGGCTCTCGATGAAAACGA
Found at i:119981 original size:20 final size:20
Alignment explanation
Indices: 119956--119996 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
119946 CATATATGCG
119956 TAATTACTATGATCCATATA
1 TAATTACTATGATCCATATA
119976 TAATTACTATGATCCATATA
1 TAATTACTATGATCCATATA
119996 T
1 T
119997 TATATATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.39, C:0.15, G:0.05, T:0.41
Consensus pattern (20 bp):
TAATTACTATGATCCATATA
Left flanking sequence: Indices 119456 -- 119955
CGACGAATATTTTTTGTTGCTGTCGGAATAAGTATAAGCCCAAATCCTATTGACATAGTAACTGG
AAGTGGAAGAAAAGTTATTATCCATGCATATTGATATGTATGTTCCATAATAAAAAATGAAATTT
TTAATCATTCTACTAAAACTGGAATAATACAATATTCCATCCTGGTAATTTATAGGCATATTATA
TAATATAGTATATTAAGGAAAAATGGTTATACCAAAAGGAATACTTAATTCGAATATAGATAGTA
CGATCCGTACTTTTAATTTAAATTAAAAAAATAAATAAGATTATTGTTATCGGGTAATCAAATAT
TTTAGTTAACAGATTAACTACTAATTCGAATTTTAATTTCAATTATAGGTATGGCATTCTTACCT
TAATCAATTAATAAAAAATAATTTCCTTCCTTTCTTGTACTTGTATTTTTTTTTCTTAGCTATAC
CTTAGCTATATTATATATGTCATAGGGTATGTATACATATATGCG
Right flanking sequence: Indices 119997 -- 120496
TATATATATATATCATAGATTAAATTATTTATATTTTAAATATATTAATGTGTATGTTTCCATTT
TTTAATTTTAATTTTATTATATGTTTATGTTTTCATAGGTTTTTTTTAATGTGTTTGAAAAATTA
AATGTTTTTTTACTATTTTACTACGGAATAAATATGGATAACGGCTAAAAGGAACAATTCATTTT
GAACAATACATGTCTTTCACATACAATGATAAAAATAAGTAACCCTTTTTTTGAATGGCAGTCCC
CAAAAAACGTACTTCTATGTCAAAAAAACGTATTCGTAAAAATATTTGGAAGAAAAAAGGAAATT
TAGCTGCAGTAAAGGCTTTTTCTTTAGCAAAATCGGTTTCCACCGGACGTTCAAAAAGTTTTTTT
GTACAACAAACAAATAATAAAGTCGTGGAATAATCGGAATTGACATACCCCGAAAAACATCAAGT
ATTATAAAATAAATGATTAACATTAATTAGTGTATTGAACTCCTC
Found at i:120766 original size:21 final size:21
Alignment explanation
Indices: 120740--120781 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
120730 TTACCATTAT
** *
120740 TATATAATTATTATATATATA
1 TATATAAAAATTAAATATATA
120761 TATATAAAAATTAAATATATA
1 TATATAAAAATTAAATATATA
120782 ATGAAAATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
TATATAAAAATTAAATATATA
Left flanking sequence: Indices 120240 -- 120739
TTTTGAATGGCAGTCCCCAAAAAACGTACTTCTATGTCAAAAAAACGTATTCGTAAAAATATTTG
GAAGAAAAAAGGAAATTTAGCTGCAGTAAAGGCTTTTTCTTTAGCAAAATCGGTTTCCACCGGAC
GTTCAAAAAGTTTTTTTGTACAACAAACAAATAATAAAGTCGTGGAATAATCGGAATTGACATAC
CCCGAAAAACATCAAGTATTATAAAATAAATGATTAACATTAATTAGTGTATTGAACTCCTCAAT
ATCAAACAGGATCAGTTGGAACTAATTGCTGTGGTATATAAATATCGTATGTGGATGTGATATGT
AGAATAAGGGTATGTATATTGGGTTTGGGGTTTTTTTGTATCTACTTTTCACAATAGAAATTTTT
TTTCTATTGTGAAAAGTAGAGTATGATCGTGATAGAAATACAAATTTTGTTGTTTTATTTGTTAT
ATGGTTAACTAAAAACCTAATTAATTTGGTAAATCTTACCATTAT
Right flanking sequence: Indices 120782 -- 121281
ATGAAAATATATAATGAAATATAATAATGAAAGATATTAATACTTTACTTTGATAATAATAAAAT
ATTATCTAAATCGTTAGACAATGATAAATTCTTATGATTTAGTAATCAAATTGTTATACATAGAA
AATCCTAGTTATTTAATTTTCTTCATTAAATAATACATTTTATTTTTTTCGTTTTGTTTGAATCT
ATAAAATAACATTGGATAAATAAAAACGAATCCAAAAAAATAAAAGGAACAATTCCCGGTTCTAT
AGCTCAGTCTAAAACTATGGAGTTTTAACTGCTTTTTTGAAAACTTAGTTTTTAGTATACCAAAG
TTCATTATTAAAACCGAACTTACAACAATACGATACACGATACTAACTAAAGATTATTTTATTGT
TTATTTAATAAAGATTCAAATTATCATATAAATTTCAATGAATAAAGATTCATCGATTCTAATGT
TTTGTTTTATAAACTATATTGAATCCTTAAATCTCGACGATTCAA
Found at i:120789 original size:13 final size:13
Alignment explanation
Indices: 120773--120822 Score: 68
Period size: 13 Copynumber: 3.8 Consensus size: 13
120763 TATAAAAATT
120773 AAATATATAATGA
1 AAATATATAATGA
120786 AAATATATAATG-
1 AAATATATAATGA
120798 AAATATAATAATGA
1 AAATAT-ATAATGA
120812 AAGATAT-TAAT
1 AA-ATATATAAT
120823 ACTTTACTTT
Statistics
Matches: 34, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
12 6 0.18
13 22 0.65
14 2 0.06
15 4 0.12
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (13 bp):
AAATATATAATGA
Left flanking sequence: Indices 120273 -- 120772
ATGTCAAAAAAACGTATTCGTAAAAATATTTGGAAGAAAAAAGGAAATTTAGCTGCAGTAAAGGC
TTTTTCTTTAGCAAAATCGGTTTCCACCGGACGTTCAAAAAGTTTTTTTGTACAACAAACAAATA
ATAAAGTCGTGGAATAATCGGAATTGACATACCCCGAAAAACATCAAGTATTATAAAATAAATGA
TTAACATTAATTAGTGTATTGAACTCCTCAATATCAAACAGGATCAGTTGGAACTAATTGCTGTG
GTATATAAATATCGTATGTGGATGTGATATGTAGAATAAGGGTATGTATATTGGGTTTGGGGTTT
TTTTGTATCTACTTTTCACAATAGAAATTTTTTTTCTATTGTGAAAAGTAGAGTATGATCGTGAT
AGAAATACAAATTTTGTTGTTTTATTTGTTATATGGTTAACTAAAAACCTAATTAATTTGGTAAA
TCTTACCATTATTATATAATTATTATATATATATATATAAAAATT
Right flanking sequence: Indices 120823 -- 121322
ACTTTACTTTGATAATAATAAAATATTATCTAAATCGTTAGACAATGATAAATTCTTATGATTTA
GTAATCAAATTGTTATACATAGAAAATCCTAGTTATTTAATTTTCTTCATTAAATAATACATTTT
ATTTTTTTCGTTTTGTTTGAATCTATAAAATAACATTGGATAAATAAAAACGAATCCAAAAAAAT
AAAAGGAACAATTCCCGGTTCTATAGCTCAGTCTAAAACTATGGAGTTTTAACTGCTTTTTTGAA
AACTTAGTTTTTAGTATACCAAAGTTCATTATTAAAACCGAACTTACAACAATACGATACACGAT
ACTAACTAAAGATTATTTTATTGTTTATTTAATAAAGATTCAAATTATCATATAAATTTCAATGA
ATAAAGATTCATCGATTCTAATGTTTTGTTTTATAAACTATATTGAATCCTTAAATCTCGACGAT
TCAACATAAATTTACTATTATTATTTCAAGTAAGCGTAAGCCGCC
Found at i:120801 original size:25 final size:26
Alignment explanation
Indices: 120773--120822 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
120763 TATAAAAATT
120773 AAATAT-ATAATGAAA-ATATATAATG
1 AAATATAATAATGAAAGATAT-TAATG
120798 AAATATAATAATGAAAGATATTAAT
1 AAATATAATAATGAAAGATATTAAT
120823 ACTTTACTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
25 6 0.26
26 13 0.57
27 4 0.17
ACGTcount: A:0.60, C:0.00, G:0.08, T:0.32
Consensus pattern (26 bp):
AAATATAATAATGAAAGATATTAATG
Left flanking sequence: Indices 120273 -- 120772
ATGTCAAAAAAACGTATTCGTAAAAATATTTGGAAGAAAAAAGGAAATTTAGCTGCAGTAAAGGC
TTTTTCTTTAGCAAAATCGGTTTCCACCGGACGTTCAAAAAGTTTTTTTGTACAACAAACAAATA
ATAAAGTCGTGGAATAATCGGAATTGACATACCCCGAAAAACATCAAGTATTATAAAATAAATGA
TTAACATTAATTAGTGTATTGAACTCCTCAATATCAAACAGGATCAGTTGGAACTAATTGCTGTG
GTATATAAATATCGTATGTGGATGTGATATGTAGAATAAGGGTATGTATATTGGGTTTGGGGTTT
TTTTGTATCTACTTTTCACAATAGAAATTTTTTTTCTATTGTGAAAAGTAGAGTATGATCGTGAT
AGAAATACAAATTTTGTTGTTTTATTTGTTATATGGTTAACTAAAAACCTAATTAATTTGGTAAA
TCTTACCATTATTATATAATTATTATATATATATATATAAAAATT
Right flanking sequence: Indices 120823 -- 121322
ACTTTACTTTGATAATAATAAAATATTATCTAAATCGTTAGACAATGATAAATTCTTATGATTTA
GTAATCAAATTGTTATACATAGAAAATCCTAGTTATTTAATTTTCTTCATTAAATAATACATTTT
ATTTTTTTCGTTTTGTTTGAATCTATAAAATAACATTGGATAAATAAAAACGAATCCAAAAAAAT
AAAAGGAACAATTCCCGGTTCTATAGCTCAGTCTAAAACTATGGAGTTTTAACTGCTTTTTTGAA
AACTTAGTTTTTAGTATACCAAAGTTCATTATTAAAACCGAACTTACAACAATACGATACACGAT
ACTAACTAAAGATTATTTTATTGTTTATTTAATAAAGATTCAAATTATCATATAAATTTCAATGA
ATAAAGATTCATCGATTCTAATGTTTTGTTTTATAAACTATATTGAATCCTTAAATCTCGACGAT
TCAACATAAATTTACTATTATTATTTCAAGTAAGCGTAAGCCGCC
Found at i:133006 original size:15 final size:15
Alignment explanation
Indices: 132986--133015 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
132976 ATAGAGGAAT
132986 CTTTACTATCCCCAC
1 CTTTACTATCCCCAC
133001 CTTTACTATCCCCAC
1 CTTTACTATCCCCAC
133016 AATAATAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.20, C:0.47, G:0.00, T:0.33
Consensus pattern (15 bp):
CTTTACTATCCCCAC
Left flanking sequence: Indices 132486 -- 132985
AAAAGGAAATCTGAATTCCGGGAAGAACCAAAGTTTCAGATTTGATTTTTTTTTTTTACAAAAAA
CTCTTTCCCTTTTTCGATTCATTCCCATCCAATCAAAATCAAAAAAACTTTTTTGATTGGAGTTG
TTTTTTTTGTATAGATTTGTTTCTTTTTCTTGATGTTTTGAAAGAAAAAAAAGATCTTTTTTTTT
CAATTTTTTTATATTAATATTTATTTTTTTTTTAGTCTTAGCATTTTTTTCAAGTTTGGAACCGA
TATGTACATTTGTAAAGTCGATAATATCGATATCGTTTACATCAATAGTGTTTTTCGGGTAAAAA
TGTAGAATTCTACAATCAAAATATTTCCTATTCAGATTTTTATGCTTATTAAAAACATAATTTTT
TTCTATGGAATTATCAATTCCATAAAACAATTCGGGTTTCTGTATGTTGAAATTATATGGAATTT
TTTGGTTCCTTTTTAGTTGTAATTTTGGTTTATAAATAGAGGAAT
Right flanking sequence: Indices 133016 -- 133515
AATAATAATATATATATTTATGTGATAAAAGATCATATACATATTGTTTTTTTAATTTTTCTTTT
TGATTCGGCCATAAATACACTGTATAGAAATTTTCTTTTTTGTAATGAATTGATCGGTCTTTTTC
TTTTTTATATGAAGAAAATTTCATTGATTCTTTATTGTGAATCGTACAATTTTGATTGATTTTTT
TTCGCCATTTTTTCGCTACTAATACTAATCGAGACCATTTGCTCTGAGATAAATTGTATGCATAA
TTAGCCTTTAACCAGTTTTTCCATTCATTCATTCCAGGCTTTTTTATTTTCTTATACTTATACCT
TGATTTGGAGTTAAATATTCCTCGGGTTATAGAATAATACTTTATCTTGTCCTTAATAAAAGGAT
GGGTACCGCGATATTGAAGTACAGATCTAAAGTGATGGTTGTTAAGTAATTGGGTTTGTGATATT
TTGTAAAATACATATGCTTGGGACAAGGAAGATAAATCGTAATAA
Found at i:135216 original size:21 final size:21
Alignment explanation
Indices: 135183--135224 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
135173 GAATGATTTT
*
135183 TTCTTTAAGGATTTCTTCTCC
1 TTCTTCAAGGATTTCTTCTCC
*
135204 TTCTTCAATGATTTCTTCTCC
1 TTCTTCAAGGATTTCTTCTCC
135225 ATTGGTTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.14, C:0.26, G:0.07, T:0.52
Consensus pattern (21 bp):
TTCTTCAAGGATTTCTTCTCC
Left flanking sequence: Indices 134683 -- 135182
TCGTTTTCATCGAGAGCCTTCAGAGTTTTCTTCATCTTTTCTTTCTCAAAATCGTCAATTTTTAA
TTCCGTTTTTGGTTTTTTCTTCGCAAAATTCCTAAAAATAGACTTAATATTTTGATCGATCTTGT
TTAAAAGAGAAAAAAAAAATATGTTTTCTACTCGATCAAAAAAAAGCGGAGAATTTACATATGCT
TGGAATGTGTTCCAAATAACTGTTTTACGTCTTTGAGCGCGTAAGGATCCTTTGATTAGACCTCG
ACGAAAATCAGGTTGTTGTGAGTAACGTATCAAAGCCAACTCGTTTATTTCATCATCGTTAGTCT
CGGGATTCACGCTGTAGTCAGTATAAATCACCACTCGTCTGGCTTTTCTTGTACGAATTTCCTGA
TCTTGTTTCATTAGTTGCTCATGTTCATCTTCTTCATCTTCATCCTGTGCTAGTGCTTCTAACTC
TTCAGTTAGTTTGTATAACCGTTGAGGAATTTTTTGAATGATTTT
Right flanking sequence: Indices 135225 -- 135724
ATTGGTTGTAATTATATCGAATACGGATTTCAAAGATTTTGCTTTATTTTCTGAATTTCTTTTTA
TTTCTTCTTCCAATAAAGAAGATTTTTTCAAATGAGAATTGGGTATGTACTCAAAAGATAATTGA
TCAATTGACGTTAACGAATTAATAATATAATTCCATGGTGATTTTTCATTAAGTGGATTTTTTTC
ATGTTCAAATTCTTGGTAATTATTAGAAATCGAAAATAGCCCATGAAGCTTATTTATCCAAACTA
TTTTCGTGGAATTTTCTTTCGAAGTAATTAAATGATTCATGGTTGTATGTGAATAGAATTTGTTT
ATTTTTCCACGATATGCGCCATTCAAAAGAGGATCATATGCTTTTGGCAAGTATTCTTGTTTATT
CTCATCATTGCATAATCTGGTCCTTTTTTCTAGTATATCTAGAGTAAGAGATACTTTTTCTTTTT
CTATAATTTTTATTCTACTTATTAATTCATTACTCAAGTTGTACT
Found at i:146401 original size:23 final size:23
Alignment explanation
Indices: 146371--146418 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
146361 CATTTTCATT
* *
146371 TATTAATTTCGTAGTTATAGAAA
1 TATTAATTTCATAGTAATAGAAA
146394 TATTAATTTCATAGTAATAGAAA
1 TATTAATTTCATAGTAATAGAAA
146417 TA
1 TA
146419 CATGTCCTAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.10, T:0.42
Consensus pattern (23 bp):
TATTAATTTCATAGTAATAGAAA
Left flanking sequence: Indices 145871 -- 146370
CTATTCCTGAACACGGGCCTTCTTTTCGCACTATTACTATTATAGATAGTAAAATAATGGGAAAA
ATTGGATTCAATTGTCAACTGCTCCTATCGGAAATAGGATTGACTACGGATTCGAGCCATAGCAC
ATGGTTTCATCGTACGATTTTCCCGATCTAAATCGAGCAGGTTTTACATGAAGAAGATTTTGTTC
AGCATGTTCTATTCGATACTGGTAGGAGAAGAACCCGACTCGGTATTGTTAAAAAAAGAGGGGAA
GCAGAACCAAGTCAACAAGTCAAGATGATATGGATCACCCCTTCTTCTTGCGCCAAAGATCTTAC
CATTTCCGAAGGAACTGGAGCTACATTCCTTTTCAATTTCCATTCAAGAGTTCCTATGTGTTTCC
ACACCCTTTTTTGAGACCTCGAAAAAGAAAATGGACAAATTCCTTTTCTTAGGAATACATACAAG
AAAAAGGATAAAGGTAACCCCACCATTAACTACTTCATTTTCATT
Right flanking sequence: Indices 146419 -- 146918
CATGTCCTACCGAGACAGAATTTGTAACTTACTATCCTCTTGCCTAGCAGGCAAAGATTTACCTC
TGTGGAAAGACTGATTCATTCGGATCGACACGAGGATCCAACTCCATTGCATTGCCGGAATCTAT
GTTGTATATTTGAAGCAGGTTGACCTCTTTGCTTCTCTCATGGTACAACCCTCTTCCCGCTGAAC
CCCCTTTCTCCTCGGTCCACAGAGACAAAATGTAGGACTGATGCCAACAGTTCATCACGGAAGAA
AGGACTCACCGAACCGGGATCGCTAACTAATACTAAATATAATAGAAAAAACTGTCTTTTCTGTA
TACTTTCCCCAGTTCCATTGCTACCGCGGGCCTTACGCAATCGATCGGATCATATGGATATTCCT
TCAACACAACATAGGTCATCGAAAGGATCTCGGACGACTCACCAAAGCACGAAAGCCAGGATCTT
TCAGAAAATGAATTCCTATTTGAAGAGTGCATAACCGCATGGATA
Found at i:154939 original size:24 final size:24
Alignment explanation
Indices: 154912--154959 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
154902 GTCATCATCA
* *
154912 ATATCGTCACTATCATCAATATCG
1 ATATCGTCACGATAATCAATATCG
*
154936 ATATCGTCACGATAATCACTATCG
1 ATATCGTCACGATAATCAATATCG
154960 TCACTATCAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.31
Consensus pattern (24 bp):
ATATCGTCACGATAATCAATATCG
Left flanking sequence: Indices 154412 -- 154911
TAATACTAATGGATAGGGCCTCATTGATAAGTGCTGCAAGATCTCGTGCATTGGAACCCATGGTT
ATGGACCCGAATCCGTTAGTATGGAACATTTTCTTTTCCAAGTGAAACCCTTTAGTATATGAAAG
AATGAAAAAGTGCTTTCGTTGTTGTTGAATAAGAAGCCTTCGTATCTTAATGCATGTATTTAATT
TATTCGGAGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGAGTCGAACCAATAACAAGAATA
TTTCTAGTGGAATATCTTTCACAATCTCTGGAGAGATAGTTCTGTAATAGACCGAAGGATCTGTA
ATTCACATACAGATCATGAATGTTTGGAATCCATATTATGCAAGGAGACATTGCTCTTGCTAATG
CGAATCGAAAGGTGATATCGATATAAAATCCATATATACTCGGCGGCATATCCATAGTTAGCACA
TTCGTCATATCTAGCAGCTCCGTATCAAGATCAAGGTCATCATCA
Right flanking sequence: Indices 154960 -- 155459
TCACTATCACTATTATCAATAAAAAAACCTTCAGGCTTGTAATACGAATACGGAAAGTTGTTCGG
AAATATCGTAATGAAAGGAACATGGGAGTTTGTCGCTAGGTATTTGACCAAATAGGATCGTCCAG
TTCCTATAGAACCTATCACTAAAATACCCCTAGAAGGGGATAGGGCTAAACGGAGCGAGAAGGGT
TTTCCATGAGATGGGAAATGAAAACTATTAGCCCCACACGGGGTTTGTGAATAAGTGATTGTCTG
ATAATGAGCAAGGAATATCCGTCTTTCTGCTAAACAGGATCTATTGAACTCATAATTCATTAGAT
ACTTTTTATGAATGTCAACTAAGTATCGTAAGTAAACTGATCCCGGTTGTTCAATCATTTGATAA
CCAGAGTCATTCTTTGATAAATGATCACTATGAGTCAGACTCAATAGAATTTGATCAATCCTTTT
TTCTTTTTCGGTCGTTAAGGTGGAGAACTGAACCAAGAATTCTCT
Found at i:156137 original size:21 final size:21
Alignment explanation
Indices: 156111--156153 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
156101 GGAAACACTT
156111 ACTCGAAATCTCACTTATCAG
1 ACTCGAAATCTCACTTATCAG
* *
156132 ACTCGAAATCTTACTTTTCAG
1 ACTCGAAATCTCACTTATCAG
156153 A
1 A
156154 GTCAGAGTCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.33
Consensus pattern (21 bp):
ACTCGAAATCTCACTTATCAG
Left flanking sequence: Indices 155611 -- 156110
CGATTGATGGGATTTTGTATGATACTTCTGAGATCGATGAGATTGATATTCAAATATTTCTTCTT
AGAACGTATTGATTTGACCCCATAAGCGGAACCACCAACCAATAGCATGTTGCCACCAGAAGCAG
AAACCCGTATTTCTTCCAGAAAATCTCCTAATTGTTCCAGAGCAACTAGAAAGAGATTCTTTAAC
CAGAAAGAATTCAGTTCAGATTCAGATGTAGGATACCTATCCAAAAGTTTTCGCAACTCAATCAT
GTATGATGGAATCATCAAAGATTTGATCTTTTCTAACTCTGTCTGTAACTCACTAGAGGCTCGGG
AAACAAAGAGAAGATGTATGCGAACGAGATATCCAGCAACAAGAAGAAGGAAAAGGATTGAATAG
AGGAACTCCCGAGCATTTGTTAATCTCAGATGTGTCCATATCAATGGAACGGGTGACTCATTATT
TCGATGAATCGTTTCTTCGGACAGAAGGAGATTCTGGAAACACTT
Right flanking sequence: Indices 156154 -- 156653
GTCAGAGTCCATTGTGGAAGAATCTTCTGAGGAATTGGCCATGATATATCTGATACATGCATAAT
ATCTCTCAAAACGGATACAAATTTGTGCCTGCTACTTAGTATCCTTAGTATCGGCAATGGTTCTG
AAAAAATCTCTAAAAGGGTGGTGAAATTTAGATATTTCCACCCTGTCGAAGTAAGGAACCATGGC
ATATATGTTTGGAAGAGATTCCATTTTGAGAGATTGAAAAGAGCACTATCTCGTTGAAAGGTTCT
ATACATCTGCCCTTTCTCAACGCATTTCTTTAGAGAAAGACTCCGTTTTTTTTTCCTCTTTCCAG
ATGGGAAATCCTTCTCAGAACATGGAGTGTGAATCAAATCCATGTTTGAATTGAAACTGAGATAC
TCATGCAAGTTCTTCCCTTCTGAATCAGATAGATTCATATCTGAAAGAGGCTGACAATAAGTTCT
TTCAAAATTAACTATTTGTTCCTCTGTTAGAGGTGTTGTATAAAT
Found at i:157422 original size:21 final size:21
Alignment explanation
Indices: 157398--157479 Score: 119
Period size: 21 Copynumber: 3.8 Consensus size: 21
157388 AGAAAAGGGG
157398 AAGTGACTTGGACAAAAAGAA
1 AAGTGACTTGGACAAAAAGAA
*
157419 AAGTGACTTGGACAAAAAGAG
1 AAGTGACTTGGACAAAAAGAA
157440 AAGTGACTTGGACAAAAAGAAA
1 AAGTGACTTGGACAAAAAG-AA
*
157462 CGAAGTGACTTAGACAAA
1 --AAGTGACTTGGACAAA
157480 TCTTGTTTGT
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
21 39 0.71
22 1 0.02
24 15 0.27
ACGTcount: A:0.50, C:0.11, G:0.24, T:0.15
Consensus pattern (21 bp):
AAGTGACTTGGACAAAAAGAA
Left flanking sequence: Indices 156898 -- 157397
GTAGGATCATAATTATTGATACGGGTCTTTTCCACATAAAAAGGGAATCCTTTGTTACAATAGAA
CCAGAAGCGATTTGGATCATTCAAGAATCGAAGTGGATTTGCTTTATAAAAAGAAGATATCAATG
AACTTCTATGAAATGGTTTCACGGGATTCAGCCAATTGTCTCGATCATGGAATATCATTGATAAA
TAGGAATCCGTGTTATCAAAGGATTTCCTGCGATTATTTCTAGTATGGAATGAGTCAATCACCCA
CTTTGGTATCTTTTTGAAGCAAAATGGTAATCTTGTTCCTCCATTGATCAAGGATTTCGGTCTTT
TGGAAGTATCATGATCATCCAATAAGAAGGGTTTCAATTTATTCAAATGAACGATTTGAACACCT
ATTGATTCTAACAACTGATTGCGGAGTTGATCATTCGGACCTTTCAATTCATAGATGTGGATCTC
GGACCTATGAATGGGGGTATTCCCGATACTCACAAAGAAAAGGGG
Right flanking sequence: Indices 157480 -- 157979
TCTTGTTTGTCTATAACCTCGGACCAATCAATCGAATATTGATTAATACGTAACCGATCGAACAC
TACTTGAAAATGGTTCTTCTGTTCAGAAAGGAAATGTTCCTGGAAATTCTTGCTCCCATTGGACC
ATTTGTATCTATATACATCAGGATCCCGATTCATGGATCTCCCGGTTCGAGAAATAAGAGGATCA
AACCATTTCTTCTGACTCTTTTTCAAATTCGATAAATGTTGGTTGATCGTATATTTCATTATAGT
TATATGATTCAGAGTATCATTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGTTGTGATCGG
ATCTATTCATTAAAAAGAATCGATTAGATACATTTCTTATGTACCCATAGATTTGAATCAGATTT
CGGATCAATCTATATTGATTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCGCTGTTTTTCG
TTTTGGATCTTCCAAATCATTCCCGCAGTAGATCCGGGCCGATTT
Found at i:157447 original size:42 final size:44
Alignment explanation
Indices: 157397--157479 Score: 134
Period size: 42 Copynumber: 1.9 Consensus size: 44
157387 AAGAAAAGGG
*
157397 GAAGTGACTTGGACAAAAAG-AA-AAGTGACTTGGACAAAAAGA
1 GAAGTGACTTGGACAAAAAGAAACAAGTGACTTAGACAAAAAGA
157439 GAAGTGACTTGGACAAAAAGAAACGAAGTGACTTAGACAAA
1 GAAGTGACTTGGACAAAAAGAAAC-AAGTGACTTAGACAAA
157480 TCTTGTTTGT
Statistics
Matches: 37, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
42 20 0.54
43 2 0.05
45 15 0.41
ACGTcount: A:0.49, C:0.11, G:0.25, T:0.14
Consensus pattern (44 bp):
GAAGTGACTTGGACAAAAAGAAACAAGTGACTTAGACAAAAAGA
Left flanking sequence: Indices 156897 -- 157396
TGTAGGATCATAATTATTGATACGGGTCTTTTCCACATAAAAAGGGAATCCTTTGTTACAATAGA
ACCAGAAGCGATTTGGATCATTCAAGAATCGAAGTGGATTTGCTTTATAAAAAGAAGATATCAAT
GAACTTCTATGAAATGGTTTCACGGGATTCAGCCAATTGTCTCGATCATGGAATATCATTGATAA
ATAGGAATCCGTGTTATCAAAGGATTTCCTGCGATTATTTCTAGTATGGAATGAGTCAATCACCC
ACTTTGGTATCTTTTTGAAGCAAAATGGTAATCTTGTTCCTCCATTGATCAAGGATTTCGGTCTT
TTGGAAGTATCATGATCATCCAATAAGAAGGGTTTCAATTTATTCAAATGAACGATTTGAACACC
TATTGATTCTAACAACTGATTGCGGAGTTGATCATTCGGACCTTTCAATTCATAGATGTGGATCT
CGGACCTATGAATGGGGGTATTCCCGATACTCACAAAGAAAAGGG
Right flanking sequence: Indices 157480 -- 157979
TCTTGTTTGTCTATAACCTCGGACCAATCAATCGAATATTGATTAATACGTAACCGATCGAACAC
TACTTGAAAATGGTTCTTCTGTTCAGAAAGGAAATGTTCCTGGAAATTCTTGCTCCCATTGGACC
ATTTGTATCTATATACATCAGGATCCCGATTCATGGATCTCCCGGTTCGAGAAATAAGAGGATCA
AACCATTTCTTCTGACTCTTTTTCAAATTCGATAAATGTTGGTTGATCGTATATTTCATTATAGT
TATATGATTCAGAGTATCATTTCCTATTTGATCCCTTTGAATTCCATATTCGAAGTTGTGATCGG
ATCTATTCATTAAAAAGAATCGATTAGATACATTTCTTATGTACCCATAGATTTGAATCAGATTT
CGGATCAATCTATATTGATTGACTGCCTCCATTATGTTGTTGCTAGCAAATACCGCTGTTTTTCG
TTTTGGATCTTCCAAATCATTCCCGCAGTAGATCCGGGCCGATTT
Found at i:160072 original size:50 final size:50
Alignment explanation
Indices: 160014--160253 Score: 352
Period size: 50 Copynumber: 4.9 Consensus size: 50
160004 GTATTTGAAC
*
160014 TGGAATTTGTTTATTTACGATATATGATGTGTTAAGTTAAGCATCCCAAT
1 TGGAATTTGTTTATTTACAATATATGATGTGTTAAGTTAAGCATCCCAAT
160064 TGGAATTTGTTTATTTACAATATATGATGTGTTAAGTTAAGCAT-CC-A-
1 TGGAATTTGTTTATTTACAATATATGATGTGTTAAGTTAAGCATCCCAAT
* ** **
160111 TGG-CTGTAAATAAATTT-C-A-A-ATGATGTGTTAAGTTAAGCATCCCAAT
1 TGGAAT-T-TGTTTATTTACAATATATGATGTGTTAAGTTAAGCATCCCAAT
160158 TGGAATTTGTTTATTTACAATATATGATGTGTTAAGTTAAGCATCCCAAT
1 TGGAATTTGTTTATTTACAATATATGATGTGTTAAGTTAAGCATCCCAAT
160208 TGGAATTTGTTTATTTACAATATATGATGTGTTAAGTTAAGCATCC
1 TGGAATTTGTTTATTTACAATATATGATGTGTTAAGTTAAGCATCC
160254 ATGGCTGAAT
Statistics
Matches: 169, Mismatches: 11, Indels: 20
0.85 0.05 0.10
Matches are distributed among these distances:
44 21 0.12
45 3 0.02
46 8 0.05
47 10 0.06
48 8 0.05
49 3 0.02
50 116 0.69
ACGTcount: A:0.32, C:0.10, G:0.17, T:0.41
Consensus pattern (50 bp):
TGGAATTTGTTTATTTACAATATATGATGTGTTAAGTTAAGCATCCCAAT
Left flanking sequence: Indices 159514 -- 160013
ATGAAACAACTCTCAGAAAGCTTTTTCCCTTTTGGAAGATACAGGAGCGAAACAATCAACCTATT
GATATTGGAAGACCAAAAAGATTCTTCCAATGTCTCATTTCCAGGTCCAATGGAATTCATAGGTA
TAGGAAGAAGCCCCATCAAATAGAGATTTTTTCTTTCGACCATCTTTCGATTGTTAATACGAGAT
ATAAGGACCGCTACTACAAGCAGTACTACACCTTTGATCATGAAATATCGATTGCTTGTTGAACC
CTGCGAATCGCGTGAAAGTAGGATACTCCAAATTCGGGGGTCAAAAAGTTTCATAAAGCGTTCTT
GATGGAAAAAAATGTGAGTGAAAGATCCCACTGAATTGAATTTGATCCATGAATCTAAGAAATAG
TGAGAATTCTTGATCTCTCTCAATATCTCTCTCAATTCGACGATCCAGGATTTGAATTGATGTCT
CTTCATTGATATTTAGACCTCCTCCGGCGAAGATTGTATTTGAAC
Right flanking sequence: Indices 160254 -- 160753
ATGGCTGAATGGTTAAAGCGCCCAACTCATAATTGGTAAATTCGTAGGTTCAATTCCTGCTGGAT
GCACGCCAATGGGAACGTTTAATAAGTCTATTGGAATTGGCTCTGTATCAATGGAATCTCATCAT
CCATCCATAACGAATTGGTATGGTATATTCATACCATAACATATGAACAGTAAGAACTAGAATTC
TTATCGATACTGGAACTCATAGGGAAGAAAATGGATTTATGGATGGAATCAAATATGCAGTATTT
ACAGAAAAAAGTATTCGGTTATTGGGGAACAATCAATATACTTCTAATGTCGAATCAGGATCAAC
TAGGACAGAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTC
ATCGACTCCCGGGAAAGGGTAGAAGAAGGGGACCTATTATGGGACATACAATGCATTACAGACGT
ATGATCATTACGCTTGAATCGGGTTATTCTATTCCACCTCTTATA
Done.