123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_008331
Parameters: 2 7 7 80 10 50 500
Length:  570354

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27499--27535	18	2.1	18	94	0	65	45	21	13	18	1.84
33030--33061	3	10.7	3	100	0	64	34	0	34	31	1.58
36093--36130	18	2.1	18	90	0	58	21	31	21	26	1.98
38826--38921	5	19.2	5	100	0	192	19	20	0	59	1.38
43835--43869	18	1.9	18	100	0	70	45	0	25	28	1.54
67821--67845	5	5.0	5	100	0	50	40	20	0	40	1.52
78354--78391	20	1.9	20	100	0	76	42	18	26	13	1.87
79727--79781	21	2.6	21	88	0	74	16	43	3	36	1.65
82692--82731	5	8.0	5	100	0	80	20	0	20	60	1.37
91828--91889	21	3.0	21	78	0	61	12	29	24	33	1.92
93285--93340	25	2.2	25	84	12	71	35	30	14	19	1.91
98883--98937	5	11.0	5	100	0	110	40	0	0	60	0.97
100449--100486	18	2.1	18	90	0	58	26	21	31	21	1.98
117344--117368	6	4.2	6	100	0	50	48	0	16	36	1.46
119072--119137	5	13.2	5	100	0	132	21	19	0	59	1.38
124300--124336	6	6.2	6	100	0	74	32	16	16	35	1.91
125976--126008	6	5.5	6	100	0	66	33	15	0	51	1.43
126007--126058	6	8.7	6	100	0	104	48	0	34	17	1.48
126724--126767	21	2.1	21	86	0	61	27	20	27	25	1.99
145151--145208	29	2.0	29	96	0	107	22	17	29	31	1.96
147056--147083	5	5.6	5	100	0	56	39	0	39	21	1.54
153001--153085	5	17.0	5	100	0	170	40	60	0	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154799--154847	5	10.0	5	97	2	91	38	20	0	40	1.53
170209--170242	5	6.6	5	96	3	59	20	0	17	61	1.34
171496--171544	24	2.0	24	100	0	98	36	12	0	51	1.40
188690--188788	37	2.7	37	93	3	164	47	14	14	24	1.80
196761--196822	29	2.1	29	85	5	81	37	3	37	22	1.71
203279--203315	5	7.4	5	100	0	74	0	37	0	62	0.96
204894--204930	6	6.3	6	93	6	67	18	0	32	48	1.49
208436--208481	6	7.8	6	97	2	85	17	34	17	30	1.93
214077--214113	5	7.4	5	100	0	74	40	18	0	40	1.51
214113--214137	13	1.9	13	100	0	50	52	0	16	32	1.44
218195--218328	5	27.0	5	99	0	261	20	40	0	39	1.52
235424--235463	5	8.0	5	100	0	80	60	20	0	20	1.37
238369--238428	21	2.9	21	84	0	75	36	3	41	18	1.67
239764--239801	20	1.9	20	100	0	76	13	26	18	42	1.87
249020--249051	5	6.4	5	100	0	64	21	18	0	59	1.38
249563--249617	5	11.2	5	94	3	94	41	1	18	38	1.61
258782--258818	18	1.9	19	89	10	58	32	16	29	21	1.95
278501--278544	22	2.0	22	100	0	88	31	27	4	36	1.77
279634--279667	15	2.3	15	89	0	50	44	11	11	32	1.77
280171--280251	41	2.0	41	97	0	153	30	4	18	45	1.70
292536--292561	5	5.2	5	100	0	52	19	0	57	23	1.40
300279--300340	27	2.3	28	83	13	85	24	30	14	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316560--316598	20	2.0	20	94	0	69	43	5	20	30	1.73
329929--329956	14	2.0	14	100	0	56	21	14	21	42	1.88
333204--333247	21	2.1	21	100	0	88	52	9	4	34	1.54
333241--333273	14	2.4	14	94	0	57	54	3	15	27	1.55
350155--350183	6	5.0	6	95	4	51	34	17	0	48	1.47
355524--355551	11	2.5	11	100	0	56	71	0	21	7	1.09
374736--374783	23	2.1	23	92	0	78	35	22	20	20	1.96
389772--389823	23	2.3	22	83	12	61	42	7	25	25	1.81
422654--422692	20	2.0	20	94	0	69	43	5	20	30	1.73
456309--456452	6	24.0	6	100	0	288	16	16	0	66	1.25
464432--464492	5	12.2	5	100	0	122	39	19	0	40	1.52
481053--481104	27	1.9	27	96	0	95	28	21	11	38	1.88
482132--482177	23	2.0	23	95	0	83	36	15	4	43	1.66
487571--487636	33	2.0	33	93	0	114	34	12	39	13	1.82
500581--500656	36	2.1	36	97	0	143	19	40	7	31	1.80
501208--501280	34	2.1	35	97	2	139	10	12	31	45	1.76
503661--503754	7	13.1	7	96	3	170	41	0	15	42	1.47
504733--504761	12	2.4	12	100	0	58	24	17	6	51	1.69
504796--504911	6	19.3	6	100	0	232	33	16	0	50	1.46
515438--515472	5	7.0	5	100	0	70	20	40	20	20	1.92
516105--516175	5	14.2	5	100	0	142	39	19	0	40	1.52
516995--517047	18	2.9	18	80	5	63	22	22	13	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
518874--518904	5	6.2	5	96	0	53	35	19	3	41	1.67
524655--524694	17	2.3	18	91	4	64	27	22	5	45	1.73
533518--533619	6	17.2	6	97	2	197	16	0	50	33	1.46
538910--538954	15	3.0	15	83	0	54	44	0	20	35	1.51
538913--538954	10	4.2	10	84	0	57	45	0	21	33	1.52
548399--548435	5	7.4	5	100	0	74	40	0	40	18	1.51
553334--553373	5	8.0	5	100	0	80	60	20	0	20	1.37
556279--556338	21	2.9	21	84	0	75	36	3	41	18	1.67
557674--557711	20	1.9	20	100	0	76	13	26	18	42	1.87

Tables:   1

The End!