123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_008332
Parameters: 2 7 7 80 10 50 500
Length:  680603

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10883--10937	21	2.6	21	88	0	74	16	43	3	36	1.65
29651--29702	23	2.3	22	83	12	61	42	7	25	25	1.81
34131--34155	5	5.0	5	100	0	50	40	0	20	40	1.52
67199--67242	22	2.0	22	100	0	88	31	27	4	36	1.77
68327--68360	15	2.3	15	89	0	50	44	11	11	32	1.77
68905--68978	17	3.9	17	73	21	67	37	25	16	20	1.93
68907--68988	41	2.0	41	95	4	148	34	26	14	24	1.94
77313--77347	5	7.0	5	100	0	70	40	0	0	60	0.97
78859--78896	18	2.1	18	90	0	58	26	21	31	21	1.98
88965--88992	11	2.5	11	100	0	56	71	0	21	7	1.09
110580--110617	18	2.1	18	90	0	58	52	7	23	15	1.69
130101--130135	18	1.9	18	94	0	61	14	25	20	40	1.90
131158--131190	6	5.5	6	100	0	66	33	15	0	51	1.43
144173--144214	21	2.0	21	100	0	84	23	23	14	38	1.92
149468--149502	5	7.2	5	90	6	54	42	2	17	37	1.64
165067--165105	6	6.3	6	96	3	69	48	0	15	35	1.45
165274--165313	20	2.0	20	100	0	80	20	20	15	45	1.86
170620--170650	5	6.2	5	100	0	62	38	19	0	41	1.51
174136--174193	29	2.0	29	96	0	107	22	17	29	31	1.96
188513--188551	20	2.0	20	94	0	69	43	5	20	30	1.73
222169--222198	6	5.0	6	100	0	60	16	16	0	66	1.25
223670--223695	5	5.2	5	100	0	52	23	19	0	57	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230187--230217	5	6.2	5	100	0	62	38	19	0	41	1.51
248358--248405	23	2.1	23	92	0	78	20	20	22	35	1.96
256612--256661	24	2.1	24	84	0	64	22	28	28	22	1.99
272137--272198	21	3.0	21	78	0	61	12	29	24	33	1.92
285179--285224	23	2.0	23	95	0	83	43	4	15	36	1.66
286257--286308	27	1.9	27	96	0	95	38	11	21	28	1.88
289914--289969	25	2.2	25	84	12	71	19	14	30	35	1.91
300553--300605	18	2.9	18	80	5	63	22	22	13	41	1.88
300516--300602	36	2.4	36	75	11	88	21	22	16	39	1.92
306274--306339	33	2.0	33	93	0	114	34	12	39	13	1.82
319297--319372	36	2.1	36	97	0	143	19	40	7	31	1.80
319928--320000	34	2.1	35	97	2	139	10	12	31	45	1.76
322381--322446	7	9.1	7	95	5	114	40	0	16	42	1.48
391021--391055	18	1.9	18	100	0	70	28	25	0	45	1.54
396014--396039	5	5.2	5	100	0	52	57	0	23	19	1.40
405115--405159	5	9.0	5	97	0	63	33	0	20	46	1.51
407339--407392	5	11.0	5	98	2	101	38	0	40	20	1.53
411505--411531	5	5.4	5	100	0	54	40	0	18	40	1.51
420628--420664	6	6.3	6	93	6	67	48	32	0	18	1.49
436315--436355	21	2.0	21	90	0	64	34	26	14	24	1.94
436743--436841	37	2.7	37	93	3	164	24	14	14	47	1.80
447206--447258	18	2.9	18	80	5	63	22	22	13	41	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
447169--447255	36	2.4	36	75	11	88	21	22	16	39	1.92
452927--452992	33	2.0	33	93	0	114	34	12	39	13	1.82
465950--466025	36	2.1	36	97	0	143	19	40	7	31	1.80
466581--466653	34	2.1	35	97	2	139	10	12	31	45	1.76
469034--469099	7	9.1	7	95	5	114	40	0	16	42	1.48
494360--494424	34	1.9	34	96	0	121	15	35	16	32	1.91
505984--506015	6	5.3	6	100	0	64	50	0	15	34	1.45
506050--506078	12	2.4	12	100	0	58	51	6	17	24	1.69
507058--507123	7	9.1	7	95	5	114	42	16	0	40	1.48
515189--515232	5	8.8	5	100	0	88	40	0	59	0	0.98
526649--526747	37	2.7	37	93	3	164	47	14	14	24	1.80
534686--534747	29	2.1	29	85	5	81	37	3	37	22	1.71
542826--542862	6	6.3	6	93	6	67	18	0	32	48	1.49
551959--551985	5	5.4	5	100	0	54	40	18	0	40	1.51
556098--556151	5	11.0	5	98	2	101	20	40	0	38	1.53
558331--558375	5	9.0	5	97	0	63	46	20	0	33	1.51
567451--567476	5	5.2	5	100	0	52	19	23	0	57	1.40
572435--572469	18	1.9	18	100	0	70	45	0	25	28	1.54
584985--585023	20	2.0	20	94	0	69	43	5	20	30	1.73
600901--600943	22	2.0	22	90	0	68	25	16	30	27	1.97
609029--609076	23	2.1	23	92	0	78	35	22	20	20	1.96
624101--624152	23	2.3	22	83	12	61	42	7	25	25	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
636194--636220	5	5.4	5	100	0	54	40	0	37	22	1.54
645741--645777	18	2.1	18	94	0	65	45	21	13	18	1.84
654984--655025	6	7.2	6	94	5	77	16	0	50	33	1.46
660302--660331	15	2.0	15	100	0	60	40	0	20	40	1.52

Tables:   1

The End!