Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt1/NC_007982.1/NC_007982/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           569630
Total number of identified SSRs:                 42
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	18
2	6
3	4
5	9
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	total
A	-	-	-	-	-	4			4
C	-	-	-	-	-	1			1
G	-	-	-	-	-	1			1
T	-	-	-	-	-	10		2	12
AG	-	1							1
CT	-	2							2
TA	-	2							2
TC	-	1							1
ATA	1								1
CTA		1							1
GAA		2							2
ATAGG				1					1
ATAGT	1								1
GTAAA		1							1
TAAGT	1								1
TACTA	1								1
TAGTA		1							1
TATAG			1						1
TCATA		1							1
TTTAG	1								1
ACCATA	1								1
ATAGTA		1							1
TAAGGA	1								1
TAGGGT		1							1
TATCTA			1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	total
A/T	-	-	-	-	-	14		2	16
C/G	-	-	-	-	-	2			2
AG/CT	-	4							4
AT/AT	-	2							2
AAG/CTT		2							2
AAT/ATT	1								1
ACT/AGT		1							1
AAACT/AGTTT	1								1
AAAGT/ACTTT		1							1
AACTT/AAGTT	1								1
ACTAT/AGTAT	2	1	1						4
AGGAT/ATCCT				1					1
ATATC/ATATG		1							1
AACCAT/ATGGTT	1								1
AACCCT/AGGGTT		1							1
AAGGAT/ATCCTT	1								1
AATAGT/ACTATT		1							1
AGATAT/ATATCT			1						1