Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_007982
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 569630
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:9800 original size:21 final size:21
Alignment explanation
Indices: 9765--9824 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
9755 AGGGGGTGGA
* *
9765 TAGTAGCTGTAAAGAAGAAGG
1 TAGTGGCTGTGAAGAAGAAGG
*
9786 TGGTGGCTGTGAAGAAGAAGG
1 TAGTGGCTGTGAAGAAGAAGG
**
9807 TAGTGGGAGTGAAGAAGA
1 TAGTGGCTGTGAAGAAGA
9825 TAGTGACGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.37, C:0.03, G:0.42, T:0.18
Consensus pattern (21 bp):
TAGTGGCTGTGAAGAAGAAGG
Left flanking sequence: Indices 9265 -- 9764
AGGGCATTAGAAAAGTATGAAAACTTCGGTGTTTCTGCAAAACATAAAGTATTGCAATGTTTAGT
ACACGTGGTGACATCACAATCAGACAACAGTGTTAGGTATGTCTATGGGAACATCTTTGCACTAG
TTAGATTAGGTACTTATGTAACAGTGTGGTACTGTTATACTGAGAGCGCACCAGATTTCATATCT
GTGGACCCGCACTATCTTGATATAGAATTGATTATTGATTTATTCAAAGTTCGTAAATTATTCGT
ATGGATTCCATACGAGGAAGTGATTAGTACATCAATCTTAGAAGCTTATGATGCGGTTGTGGAAA
GGACGGCTTTAACGGATTGCTTGGATAGAAAGTTGAGAGAAGAGGAATTGTCGGATAAATTCGAA
TTCTGGGGGAAATGCTCTGATGGTGATCATACCATAGATTCTGTAGAGGAGAATGCCACTATAGA
ATATGCTAGCAGTAAAGAAGGTAGTGCCTGTAAAGAGGGGGTGGA
Right flanking sequence: Indices 9825 -- 10324
TAGTGACGATAGTGACAATCCTAGATACCTGGCATTCGGTGTGGTTGTCCTTGTAGGTGTGTTAT
TATACGTCTGGTATTGTTCTAGGTAATTCTATATTTATTGTGAAAACCAGAAATAAGAGTTTCAG
TTCATACTTGGCGGTAAAGGGATAACCTTTTTGTCTTGAGTGGAAATAGAATTCCTTTTTGCAAA
GCTAGCTCTTATGGCGCATTGGTGCACAATCGTGCACTGCTTCTTCCTCATAAAAGAACCCGGCT
TTCCTTCCTATATGTTTAGGATAAAAACCTTATCCATTAAGAGATGGAACTTCAAGAGCTGCTAG
GTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACCTCCATACCAAGATTAGCACGGTTGA
TGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTGAAA
CCATTTAGGTTGAATGCCATAGTACTAATACCTAAAGCAGTGATC
Found at i:11170 original size:20 final size:20
Alignment explanation
Indices: 11145--11182 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
11135 GTCTCCCCCT
11145 CTTAGAGGCTTTCCTCTTAG
1 CTTAGAGGCTTTCCTCTTAG
11165 CTTAGAGGCTTTCCTCTT
1 CTTAGAGGCTTTCCTCTT
11183 TTTAGCAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.13, C:0.26, G:0.18, T:0.42
Consensus pattern (20 bp):
CTTAGAGGCTTTCCTCTTAG
Left flanking sequence: Indices 10645 -- 11144
ATCAAAGGCATTCCCTGGTTTACTAACCCTTATAGAGTACATGAGCCAAAGCACAATCCATCCCT
TCCAATCAGACAAGAAGGAATCCGATGTATTGATCTTCGTCTGTACTGTGCTGTACAAGACAATT
ACCAAAGATCACAACTAATGATCTGTTTGACACAAGACATGACATGACCTGGCGGATCATATACA
GAAATGGGTTTAGCCTTCTCCTTGGCTTGACTCTTGTAAGTGAAAGGTTGGATCATATCTGGTTT
CCGGGAAGGTGCCTCGCTATTCCTCTGTTTTGTAGCTGACTAGTAAAGGTGGCCTAGCCTGCACA
GGTTCGTTGGTTTCAGCTTGTGCTTTACTTGAGTGGTTTCGGGCTCTGTTTGGTATTAGCTTGAG
AAGCGGTTGTAATTGTTCATTCATATCTTGTTTCAGCAATGGTCTATACTATAGAGCTCGGGAAT
GCATTCCATGCCTATTCTTCAATATGAGAAGGGGTGTCTCCCCCT
Right flanking sequence: Indices 11183 -- 11682
TTTAGCAGCATCAGCTTGAATCTCCCGATTAGCAATCATGATTTCCGAATTAGAAAATTCATTTC
GGAGATCTTCATTCTCCTCTAACAAATTCATAATTATCCGATAGGAGGTCGGATTGATACTTTTC
ACATCAAAGTCACCTATATGGCAGGGCTTAGTATCAACCCATACTCCATTTTTGTCGAACACATA
CTCCCTCTTTTTACTTTCTAACCCCATGGTATACTTACACATTTTCTCTTGAACCAACAGTTCAC
GGAAGTTTCTACTGAACTTTCGGACATATGAAATCACTTTTTTAGCCCTAGGGTCAGCTAGCTGG
TTGATGAACCATTCTTCATCAGCCTCATCTTTACCCGCTCCTTTAAACTTTATTATGGGTTGGTC
CACACTAGATGCCTTAAGCATATAGGACTTAGGTGCTAAAAAGATGCCATATTCGACAAAGTGCT
CATGCTTAAACTTACCCAAAGCGGTAGGTGATACCTCTTCTTCAG
Found at i:18273 original size:36 final size:36
Alignment explanation
Indices: 18233--18308 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
18223 GACTCCCTCG
18233 TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
1 TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
*
18269 TCCTCTTCCTCTGTCAATCAACCCTCGCCATTAGCA
1 TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
18305 TCCT
1 TCCT
18309 TTTCTGTGAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.20, C:0.41, G:0.08, T:0.32
Consensus pattern (36 bp):
TCCTCTTCCTCTGTCAATCAACCATCGCCATTAGCA
Left flanking sequence: Indices 17733 -- 18232
TGCTTGTAACAAACAGAGCTATCTAAAGCTTGAAAGTAAGCAACAGAGCTATCTATTCCAACGTA
TTGGTCCAACTCCACGGTTCCTCTCATCTTTCTTGTCGGAGAAAGCCTGTCTTCTGAGACATCCA
TTAATCAAATTTGATCAGTAACAAAAATCGTATGTAATGAAAGAAGAGTCAGCCCTTGGGGTGGG
GCACGAGGGGGTCCCCTGTATGCAGGTCGCTACTTAACTTGACAAGCAGTGTTGCTGTGTAAGAG
ATTGTGTGGGCGCGGTTCGCGATCTCTTCTTTCCTTTCCCAACCAAATAAAGAAATGCAAAAAAC
GACTAATTCTAGACCAGAAGATCTTCTCATGTTGGATATCAGAAATAAAATGGGTGATCTTTCGG
GAGGGAGTGCCAGTAGCACCAGTTCATCGTCTTTTTTGTCTTGCAATTCTAGTCTACACTCTCAT
AGTCCTTCTTCTTCAGAAGGATTCATTTCTTTTGGGACTCCCTCG
Right flanking sequence: Indices 18309 -- 18808
TTTCTGTGAACCAGCCATCCCCTTCTTCCGTGAAAGGAGTATTCTTAACGGACAGTGGTACTCCC
TCTTCCTCTTCGTCCGTAAATCGGCCATCCCCAAACCCGACCGATGAAAGGGTCGTAGAATATCA
AGGGGCTATACGCGAGGAAATGGCCAAATTAATGCCCGGCAGGGATCACCAAGAGATTCTAGTTG
CAGCCGAACGAATACATGGGGGGAGTGCTAATATAGGATTTCTTCGATCACAGCTCCGGGATTTA
GTAGCAAATGGCACTGAAAGTGAAGCCTTCAAGTACGGAATAGCTGAGCTAGCGAATGAGAATTT
AGCGGCAAATTTCGCTGCGATGCATTTAGCGGAGAGTCCTTTGGATCAATTTGGCATTCACCCTC
TCGCTCTCGCTCTCGGTCTCGGTTTGTTCCTATTTCTAGTTTTTCTTTTTCTTGCGCTGCGGGAA
GTATGGAAAAACAGGACGAGAGCAGCATAATCGTTAGTTAGGGGT
Found at i:18908 original size:34 final size:35
Alignment explanation
Indices: 18864--18936 Score: 139
Period size: 34 Copynumber: 2.1 Consensus size: 35
18854 GTTAAGCTTG
18864 TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
1 TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
18899 TGCGC-TTGTTATTTGTTGTTTATGTGAGGCTGCA
1 TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
18933 TGCG
1 TGCG
18937 AATGATTAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 33 0.87
35 5 0.13
ACGTcount: A:0.11, C:0.12, G:0.32, T:0.45
Consensus pattern (35 bp):
TGCGCGTTGTTATTTGTTGTTTATGTGAGGCTGCA
Left flanking sequence: Indices 18364 -- 18863
TGGTACTCCCTCTTCCTCTTCGTCCGTAAATCGGCCATCCCCAAACCCGACCGATGAAAGGGTCG
TAGAATATCAAGGGGCTATACGCGAGGAAATGGCCAAATTAATGCCCGGCAGGGATCACCAAGAG
ATTCTAGTTGCAGCCGAACGAATACATGGGGGGAGTGCTAATATAGGATTTCTTCGATCACAGCT
CCGGGATTTAGTAGCAAATGGCACTGAAAGTGAAGCCTTCAAGTACGGAATAGCTGAGCTAGCGA
ATGAGAATTTAGCGGCAAATTTCGCTGCGATGCATTTAGCGGAGAGTCCTTTGGATCAATTTGGC
ATTCACCCTCTCGCTCTCGCTCTCGGTCTCGGTTTGTTCCTATTTCTAGTTTTTCTTTTTCTTGC
GCTGCGGGAAGTATGGAAAAACAGGACGAGAGCAGCATAATCGTTAGTTAGGGGTAAGAGGGGAA
TCTTATGTCCATATTATCTAAAAAAATATATGAGTGTTAAGCTTG
Right flanking sequence: Indices 18937 -- 19436
AATGATTAACTCGTGTCTTTATGTCCATGTGAGAAGGCTAATAAATTATCTCTTTTCTTTGGTCC
GGGAAAAAGGAAGTAAGACCCTCGAGACGAGAACTACATATGGTCTGATACTGACTTCCTTGAAA
AGAGGAAGACAAGTTATGTAGGCAGTAGCCGTTCCAGAAATGCAGCGGTACCACAAGTGCTCATT
CATTGGTCCAACCTAGAAGCTACTTGGGAAGACTATGAATTGATTGCAAGTAAGTATCATGGACA
AGGAGGATTTTTAGGAGAAAGGAGATCCTCTCTCAACCCAATAGATGCAATGTAGGAAGACTAGT
ATCTTTAGTCCATGGGTGTAACACCATAAGATGGGATTGATGGTAATCTATCATAAATCGTTTCC
CTTTTTGTCTAGATGACGTCCCCACGGTGTCTATAATTTATGTCAACCAATAAGAAATACCCGAA
AGAAGATGCGTAGGCCTTCAATCATGGTGCAATGAATATCGTAGA
Found at i:21329 original size:7 final size:7
Alignment explanation
Indices: 21317--21382 Score: 114
Period size: 7 Copynumber: 9.1 Consensus size: 7
21307 AGAAAACGCG
21317 TATAGTA
1 TATAGTA
21324 TATAGTA
1 TATAGTA
21331 TATAGTA
1 TATAGTA
21338 TATAGTA
1 TATAGTA
21345 TATAGTA
1 TATAGTA
21352 TATAGTA
1 TATAGTA
21359 TATAGTA
1 TATAGTA
21366 TATAGTA
1 TATAGTA
21373 GTAGTAGTA
1 -TA-TAGTA
21382 T
1 T
21383 CATTGGCCAA
Statistics
Matches: 57, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
7 49 0.86
8 3 0.05
9 5 0.09
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.42
Consensus pattern (7 bp):
TATAGTA
Left flanking sequence: Indices 20817 -- 21316
CCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCGGAAACGGACGTGGCCAAA
ACATATAAAAAAAGATCGGCCTAGTCGCTCATAGGGACATATCTATCCGGATAGAGGAGAGGATA
GTCTAGATCAATTTTTAGAAAAATCTCTCTCTATATAGAATAGAATAGATAGGTATCTCTGTGGA
TAGAGATAAAGATAGGGATCCCTCGAAATATATGGAAAAAGTGCACTTTTTTACTACTACTACTA
TTTCTTATTCTTAGACGAAACATCGTTTTTTCGATTTTGACTGAATTGGTCGGAGCGTAGACGAG
CGAGCAGAGCCCAGGAAAGAGGTCAGATCGTCATAGAGCAGTCGACTATAAGTATAAGACTGCTG
GCCTGAGAGAAGGCAGTCTCTCTCGGGAAACATGGCCCAGGGTTCTATAGTATAGTATAGTAGCC
AGACTATAGGAAAATCAAGTCTCATGTTGCTCCTCAGAAAACGCG
Right flanking sequence: Indices 21383 -- 21882
CATTGGCCAAAGTAAAGTCGATGGGACAAACGCTGTTCGTTAGAACTAGCATTTTGTTTTGTCAT
GGAATCAAGTCTATTTGTTCGAATGTTCTTTTTTTCGTTTCGTTGGAAAAACCAACGCCGACGTC
AAGAATGGATCAGTCTAGTCTCCTTTCTCTTTTGGGAGCAGAGCTGAAAAAGATGGAATTGTCAA
GTACGATGATATTTTTATTAACGGATAGAAAAATGCTATTATCAAGTAGTAAACCCATTATGATT
GCAACTCGTGGGATGCCTGGAATCCCACTAAATCGAGAATCGGAATCGGTGGAGGATGTGCATAG
GGTACTCCGAGCCCTCCCCTTATTTAGAGAAATGGAAGGTATCTTGCGTGAGAGGAACCTGAATC
TCCCGTCAGTACAGGAAATAAGCGCTTTCCGTGTGAATCTATTCTCTGGTATCCGGCGTGAGAGT
GCGATTGCGGACTACGACGCTTTTTGGCGCTCCTTACTCGAGGAG
Found at i:26686 original size:5 final size:5
Alignment explanation
Indices: 26676--26706 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
26666 GGACTACTAT
26676 TCATA TCATA TCATA TCATA TCATA TCATA T
1 TCATA TCATA TCATA TCATA TCATA TCATA T
26707 GGTGAAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.39, C:0.19, G:0.00, T:0.42
Consensus pattern (5 bp):
TCATA
Left flanking sequence: Indices 26176 -- 26675
CTAGCCTGACCTGAATAGCTATGTGCCAGAGCATCCCGCAACCGAAAAAAGGCAGTGGGCACTTT
ACTTTGGCCATCCATCAACTGAGGCAAGTAGGCGCGAAGCGTCGCTAGGAGAAGGAGAGCATTCG
TATGAGTCTACTAGTCATAGTTTTCTATTTTGTTAGTTCTACCGGAGATAAGTATGGAAGGTACT
ATGAGTATATATCCTGGTATGCTTCTAACTTACCTTTCTTCCTCGGGGGTTGGCTTTGTAATGGA
ACATGAAAACACCTTTTTTGCTTCGCCCATCTCTATATGCCACGGCGAATCGATCGGTTGAATCC
GCTGCAAGCCCATCTTCAAAATCCCCACATAGTAGGAAACTAAAGGAGCTACTAAGCGAGGAAGC
CCGATTTCTAGAGGACTAGAGAGGAAGGACTAATTCGGAGATAAATCATTCAATAGCGGATAAGA
ATCGGGTTCATAGAATCTATTTTGGGTAATGCATAGGACTACTAT
Right flanking sequence: Indices 26707 -- 27206
GGTGAAAAGACAGGATGTATTCCGACGAAATTGGATGTGATCGGCAAGAGAAAGATGGAATTTTA
TATAAGGAAGGAAATCAAACGCGTTGTTTGAGAGGGTAACTAGAGAAAAAAGAAAAATAGGCTCT
CCCTGGACTCTACGCAGGACTTCTTTCTAAGCCTTACATAATTTGAATTTCTCTGACATTCCATG
TTTCCGAAACGGATCCTATAAAATATTTCACTTTTTCTATGATCATCTCTATTTTAGGTATTCGG
GGAATCCTCCTTAATAGACGAAATATTCTTATTATGTCAATGCCAATTGAATCAATGTTATTAGC
TGTCAATTTGAACTTTTTGGTATTTTCCGTTTCTTTGGATGATATGATGGGTCAATCATTTGCTT
CATTAGTTCCAACAGTGGCAGCTGCGGAATCTGCTATTGGATTAGCCATTTTCGTTATTACTTTT
AGAGTCCGAGGGACTATTGCTGTCGAATTTATAAATTGCATTCAA
Found at i:30234 original size:29 final size:29
Alignment explanation
Indices: 30192--30249 Score: 107
Period size: 29 Copynumber: 2.0 Consensus size: 29
30182 GTTGAAGCGG
30192 GTTGCAGGACTGGTACTTGACCATTATGA
1 GTTGCAGGACTGGTACTTGACCATTATGA
*
30221 GTTGCAGGACTGGTACTTGACCGTTATGA
1 GTTGCAGGACTGGTACTTGACCATTATGA
30250 ATAGTAAGAG
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.22, C:0.17, G:0.29, T:0.31
Consensus pattern (29 bp):
GTTGCAGGACTGGTACTTGACCATTATGA
Left flanking sequence: Indices 29692 -- 30191
TGTAGACTTAGGGAATTCTCATAGTTGATGATTATTTCCTACGAAAAGACAATAGCCAACAACAT
AGATTTGCCACGGACAAGGATCTTGCCACCTTATTGTGAATTCCCTTTTTTATTCAATTGTGTAC
TCGTTCCTGTTGTTGTGCCATTAGTGACTTGAGAAGACTGTGTGAAAGAGAGCAAGAAGCCGACG
CGAGGAGATCAAGATCACAGTTGTGCTCATGCCATTAATGCTGCCCAATCCACTCTGAGATCTCT
TCCAGCCCTAAATTCCTTAACCCATTGCCAAAAAGAGATGGGAAAAGAACCTCCTTTTCTTACGC
TCCTCTTTCTCAGAGAGATGGTGAACTTGCCTTGCCCTACGAAGCTGTGAATGATAACACGGGAG
GGGTACACCACAAGAATCTCTAAAGATTATGGAGATTCATCAAAGATTACGAGAATTGGAATTAC
AGGTATCAGATCTTATCATTTGTGGTCCTTAGAACGTTGAAGCGG
Right flanking sequence: Indices 30250 -- 30749
ATAGTAAGAGTTCTTTCTACACTTGTAGATGCGTTAGGTATGTAGTAGTGAATTTTCTCCCATGT
GAACTTCAGAGAGATTCGTTAGATTACCAACAGATAAAGGAATTGGACCTTAAAAGCAATTTTTA
AAAAAGTTCAACTTCAACAAAACGTTGCGTTTAAGTCTACCTATGGTACTAGGAATCCTTCCACT
CAACAGGCAACGATCCATAATAAACTCAGTTAAGCCGATCAAATTTCCTATTTAGAAAAACCTAT
CACGAAACTATTCTTAGCGAATAACGTGCCTTTACTAGTAGTCCTATTTTACTGACCTATTCCAT
TGCTTCCTACCAGTTCCGATCCAAATGCCTACCCCTCTACTCCTATGTTTCACAAACCTGCGGCC
TATCCCTTACCAAGCTACCTAATAGCCCTGGCAGTAAATAAACTAAGTCCCAAACCTTATTTATC
TTCATTGACTCCATCTCATCCAGCATGGCAGCACGCCATTTCGGG
Found at i:44597 original size:20 final size:20
Alignment explanation
Indices: 44569--44607 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
44559 TCTGGGGATA
44569 AAGTAAAGTATCGTAAAGTT
1 AAGTAAAGTATCGTAAAGTT
*
44589 AAGTTAAGTATCGTAAAGT
1 AAGTAAAGTATCGTAAAGT
44608 AGTTGACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (20 bp):
AAGTAAAGTATCGTAAAGTT
Left flanking sequence: Indices 44069 -- 44568
GCTTGCCCTCCGGGGCCCCGGGAAGAGGAAGAAGGAGATAGAGCAAAGGGTCTCCTCTTTCTGTC
CGCTCTTCCCGGCATGTAGAGATCCGATTGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCA
TAACGGTGATATTGTAGGTTCGAGCCCTACTAAGCCCATCTGACCTGCTTAATCAATGACTCCGG
TAGTCACCTGAACCACTCTCTCGGATAGCCCACAGCCTCTCTTCTGGATGCGAAAGAAGATTCGA
TCAACGTACAAGGTTTGCCTTCTTGTGATGTGAGAAGGAGGGTTCTTAATTGTGTTCTCAGTGCA
AAAGGAGTCTGGTTCAGTGAGTCTGAAGAGAGAGAAGATCAGTAGAGCAGTTCGGGGCTTTGGGA
TTTGCCTGATCGACCCCTACCAGTGTATTAAATGAAGATTGACATTCGTATGTACAATTTACCGG
TTCTTCCTCCCGAATTGAGACCCATTGTTTATAGGTCTGGGGATA
Right flanking sequence: Indices 44608 -- 45107
AGTTGACAAAGCAAGTAGGAATAGGTCATGTCACAGATAGGCAAGTATAGAAGCAGGAGAAGCTG
ATAGACATTTGTGAATAGCAAGGCCAAGCTGTATACATATAAGCATTTTAAGGAGTTGTTTGTTG
GCATATGGTTTGTTGTCACCACGGGATGCTTATTGTTGAGAAACATAAAAAAGGTAGGCATATTG
TTCAGTTCACGTTTAGGTCAGTATAGAAGTAAAGCACGAGATAGGTGTTTACAAGCTAGCTAGGG
TTTCTAATAGGTATAAAAGGGTAAGCTAATAACCAAGTAGTAGGGATAGGTCAACGCAAGTCACG
GGTAGCCAAGAGAGACGTATTTAAGACTTTTAGTTCCAGGATAGGCAGTCATGTCAAGTAAAGTA
TAGCTTAGATAGTTCCTATAGAAGTATAGCTAGCCAAGTGACTAGGTTTAGCGGAGATAGAAATA
GCGGGCGAGATATCAGGAGACAGGACTAGGACTTTGAACGAAGCA
Found at i:60502 original size:22 final size:22
Alignment explanation
Indices: 60474--60516 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
60464 CTTTTCATCC
*
60474 AGTATGATAGGAGTACTCGGCT
1 AGTATGATAGGACTACTCGGCT
*
60496 AGTATGATAGGTCTACTCGGC
1 AGTATGATAGGACTACTCGGC
60517 AGATAGGAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (22 bp):
AGTATGATAGGACTACTCGGCT
Left flanking sequence: Indices 59974 -- 60473
AACCCTATTCCCTCAAGCAAGACTTAGTACAGCTAATGAATTAGTAACGAATAAAAGGTTGAGTG
GGTGTTGGTGGTAGTACGTCCACACTAAAAGAGTATAGTTGCACAATTATCAACCACCTATTTTT
GATCGTTCTATATCAATATTGATACTATATCAACATATAAGTCGGAATTCAAGTATCCACACTCA
AGAAATAAAAAGAAAGCTAATCTTTGTTTCATGATGGATAGCTACTCTCGATAGAAGGGTAGAGG
GAGGTAGCTAAGGTTGGTATTACGAGGAAGGTTGCTATTATTAGATAGAATTTTTTTAACTATAT
ATCATATTCTTAACTAGGCTAACGCGGTAAAGGCAAAGGTTTGATAAAAGTAGACACAATAGTAG
GGGAAAGATGTACTTCAATGAATTTATCTCCGTAATGTACAGTACATCCTTGAAGAAGGGAGAGT
GCTGAAATAGATGCACCCAAGGCCTCACCCTTAATCTTTTCATCC
Right flanking sequence: Indices 60517 -- 61016
AGATAGGAAAGCCTACCTCGCAGAAGATATCTACCATGATGCTACTCGGCTCTTAGAGGGGCGAT
CGATCTTTTTTCCAACTCGCTACTCTTCACCAGCAAGGAGATTAGCTCTTCGCTTCAGCCCTCTG
AACTTATACCCAACTATAGGACTGTAGAAATCAAAATGATGGGTAGGGGGAGGCCTAGTGATGGT
AGATGTGGTTAGGGTTGTACCGCAGGAGTGTACCCTCGATGGTGGATAGATCTCCAGCTTTTCTT
ACTGGATTTTGTTTTGATTGATCTTGCGGGTTATCTTATCTATCTATTTATTCAGCTTTCTTATC
AGGGTTGTCAGACTTCTTCTTAGAAGCTTTCTTCTTACTAGAATCTTTGATATTCTGTGTACCAG
ATTTCATCTGTTCAGATTTAGCGAGTTCTACTCGGAGATCCTCATTCTGCTCCAGCAAGCTCTTA
ATTAGCTTATAGGATGTGGGATTCAAACTATTAACATCCCCATCT
Found at i:68636 original size:23 final size:23
Alignment explanation
Indices: 68602--68649 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
68592 GAGCATACTA
*
68602 TAGACTCCGCGAATACAAGTCAG
1 TAGACTCAGCGAATACAAGTCAG
*
68625 TAGACTCAGCGATTACAAGTCAG
1 TAGACTCAGCGAATACAAGTCAG
68648 TA
1 TA
68650 TTTGTCTCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (23 bp):
TAGACTCAGCGAATACAAGTCAG
Left flanking sequence: Indices 68102 -- 68601
CCCACTAGCATAACTATCCTACGCACGATTTTGAGTTGTCTGCTCTAATATTCGCACTGAAGATC
TGTGGGTGCCGACTTTTCAAAATCACCAGACAATAAAAGAAAAATGCATCAGGAATGAAATCTGA
CACAGCGTGGCTGGAACTAATTAAACATTACGATCTCGTCAAGGATTATGCAGCTAAGGAGTGGT
GGCTGAGGCAGTGGAAAGAGAAAAGCCAATATGGCGTGGTGACGAGTGAGGTGCAACTCTTGAAA
TAGATGCAGCAGATTTGTGCCTTGGTAAGAAGAATTAGTGGACAAACTGACAACGAGAGAGGGGG
GACCGAGCCAACGAGGAAGAGCACTGTTCTTATGCTAAAATCCATTATGGTACATACACCGGGGC
AGGATACCCGATAGGCATAGGCAAGGTGGAAGAGATCAAATAAGACATTGAGAAAAGGATGCAAA
AAAGAAAAGAACGAAGTTGCAAGAAAGAGAGAAAAGAGCATACTA
Right flanking sequence: Indices 68650 -- 69149
TTTGTCTCACCGTACGTCTTCTTCACCCCGACTTGCTTCTTTCTGCTCTTTTCATTCAAATAAGC
TCTTCCCACAACCTTTCATTGCCATTTGTCTTCGAATCCTCTTCGGCAACGCTGGGCCGGTCGAA
GGGCGCTTCCAGCTCGTTAAAGCAACCACAGGAGAAGAACCACAAGGAACGGCACTACAGGTATG
GTACGAACCATGCTCTAAGATTGATAAACTACATCATCCAAGACTTCAATACGAATCCATAGGTG
AGGAGAGCAAGCCAATGAAGTCAGCCCATTAGCTAGATTGGCAATAAGCATTACAGGAGTCAGTC
TGTCCAGTATGTAAGCCATGAGTCTACTACTTAAGCCTATGCAGTCTGTCCAGTATGCCTCATGC
TGTAGTATGTCCGATATGTCATGTAAGCCATGGAGTGTATGGACTAAGTAAAAGCAATGGGCTAG
GATTGGGACTGCCTACCTTCTACAACCATTCCTACAGGACACCAA
Found at i:86795 original size:5 final size:5
Alignment explanation
Indices: 86785--86810 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
86775 TAAGGCAATC
86785 ATAGT ATAGT ATAGT ATAGT ATAGT A
1 ATAGT ATAGT ATAGT ATAGT ATAGT A
86811 CTGCCAGCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.38
Consensus pattern (5 bp):
ATAGT
Left flanking sequence: Indices 86285 -- 86784
CTTCAAAAACCGACGCTATCGGGGCTTGTTGAGACCATAGATCGCTTTGCGTAAAGGACAGACAA
GAGAAGAAGTCAGAAGGGCAGGTTCTCTTTCATCCGTCTTTTCTAGGTGCGCATCTCTATCTACT
AAAAGTAGGGGTGGTTGCCATAGATAGATTGGGTCATTCGTAACCTGAGCAATAACCGATGCTAC
TACAGCAATAACGGAAATAACCGATGCTACAGCAGAAACTACAGCTATACGTGGCGGCCCCACAC
GCAGCTTTGTTTAACAAGCATCACCCTTCCTTTCTTTTCAAATGCTTCCTCAGTCAATCAGCAGC
TTATTCGATTCCTATTCTTATTAAACATCTGATATAGATGGTGGGAACAATGAAGCAGATTCTTC
ATCTGTAGGTTGCAATCCGTATGATTTCTTCTCGATCTCCTGCTTGTGTTTCACCTCGCACCTAA
GCATCACGTTCCTAGGGACAGAGACATCTGCGCTCTAAGGCAATC
Right flanking sequence: Indices 86811 -- 87310
CTGCCAGCATGGTTACATCGTTCTGCGGGCAAGCTAAGCTTCAACTTAAAAGTCACCTGATTTGG
GCCAAAGGAGTAGGAACAGCTGCTGGGGAAGCACCATTACCATCTATGGGAGGTTGAATAGCTGC
ATAAGTAGTAGTAGGAGCATGGGCACTGGGAAAAGATGAAATCGATCCAGCTCTGGTAACAAAGC
AGTAGGCAAGGCGGAACCTCCTCTACTAAAATACGAATACGAATACGAATACCCTACTTCCGAGG
AGAAAGGACATCCCTCAATCACGGGACAATCCTCCACTCCAGGGCAAAGGTACTTCCAAAGCAGA
CAAGGTTCATCTGCGCATGAAAGGAATGAAACAAATTCAATAGATTCAATAGGGTCATCCCCACC
GAGATCGGTACCTATCTAGATCCCCAGCTTCGACAAGGCGTCCTCCTTCGCATTTTGCGACCATT
CCCACGAGGACTACGATTCGGATTCTCCAATTTCATCCCCAATTA
Found at i:128438 original size:20 final size:20
Alignment explanation
Indices: 128413--128451 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
128403 TTTGTCAACT
128413 ACTTTACGATACTTAACTTA
1 ACTTTACGATACTTAACTTA
*
128433 ACTTTACGATACTTTACTT
1 ACTTTACGATACTTAACTT
128452 TATCCCCAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.44
Consensus pattern (20 bp):
ACTTTACGATACTTAACTTA
Left flanking sequence: Indices 127913 -- 128412
TGCTTCGTTCAAAGTCCTAGTCCTGTCTCCTGATATCTCGCCCGCTATTTCTATCTCCGCTAAAC
CTAGTCACTTGGCTAGCTATACTTCTATAGGAACTATCTAAGCTATACTTTACTTGACATGACTG
CCTATCCTGGAACTAAAAGTCTTAAATACGTCTCTCTTGGCTACCCGTGACTTGCGTTGACCTAT
CCCTACTACTTGGTTATTAGCTTACCCTTTTATACCTATTAGAAACCCTAGCTAGCTTGTAAACA
CCTATCTCGTGCTTTACTTCTATACTGACCTAAACGTGAACTGAACAATATGCCTACCTTTTTTA
TGTTTCTCAACAATAAGCATCCCGTGGTGACAACAAACCATATGCCAACAAACAACTCCTTAAAA
TGCTTATATGTATACAGCTTGGCCTTGCTATTCACAAATGTCTATCAGCTTCTCCTGCTTCTATA
CTTGCCTATCTGTGACATGACCTATTCCTACTTGCTTTGTCAACT
Right flanking sequence: Indices 128452 -- 128951
TATCCCCAGACCTATAAACAATGGGTCTCAATTCGGGAGGAAGAACCGGTAAATTGTACATACGA
ATGTCAATCTTCATTTAATACACTGGTAGGGGTCGATCAGGCAAATCCCAAAGCCCCGAACTGCT
CTACTGATCTTCTCTCTCTTCAGACTCACTGAACCAGACTCCTTTTGCACTGAGAACACAATTAA
GAACCCTCCTTCTCACATCACAAGAAGGCAAACCTTGTACGTTGATCGAATCTTCTTTCGCATCC
AGAAGAGAGGCTGTGGGCTATCCGAGAGAGTGGTTCAGGTGACTACCGGAGTCATTGATTAAGCA
GGTCAGATGGGCTTAGTAGGGCTCGAACCTACAATATCACCGTTATGAGCGGTACGTTTCAACCA
ATTAAACTATAAGCCCAATCGGATCTCTACATGCCGGGAAGAGCGGACAGAAAGAGGAGACCCTT
TGCTCTATCTCCTTCTTCCTCTTCCCGGGGCCCCGGAGGGCAAGC
Found at i:145480 original size:21 final size:21
Alignment explanation
Indices: 145450--145503 Score: 63
Period size: 21 Copynumber: 2.6 Consensus size: 21
145440 ATCCAAGGGC
* *
145450 AGAGCAACGTAATCCAACGGA
1 AGAGCTACGTAATCCAACAGA
* * *
145471 GGGGCTACGTGATCCAACAGA
1 AGAGCTACGTAATCCAACAGA
145492 AGAGCTACGTAA
1 AGAGCTACGTAA
145504 ACAAGGAACA
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.37, C:0.22, G:0.28, T:0.13
Consensus pattern (21 bp):
AGAGCTACGTAATCCAACAGA
Left flanking sequence: Indices 144950 -- 145449
CAGGTTCCATCTACTTTATCCGCTTTTGGGCATGAAGAACATGCTTCTTTCTCAATTTATAGGAA
TCGTTAACCTTTTCATTGGATTGGTTTTTTTATGCAGTAGAGAAGCCGTTTCCTTTGAACTTGCT
TGGTCCATCGGACAGATATAGACATGGAGAAGCTTTTCAATGTAAATCTTTCACTACTTTGTTTG
GACCTTGCTTCTTCACTTAATGCTTGCTTTCCGTCTTGCCTTTGCTGGGCCTACGATAGGCTGTA
CTCCAATACGAAATAAGATTGTACATGAAGGTTGGTGAAAAGCAAAAGAAGCAATTGGTTCTCAA
ATGCCGTGACGTCACCTAGCTTTATTCTAAATTTATCATTCTATTGGTATGTATAGTGTCTTTCA
TCTGCTTTTTCATTCATTCTGCCCACAGCCGTTAGGTATTATGACAAAAGGAACCAGCATGTTGC
GGAGCAGCCAAGTAAACCAAGAAATGACTCAAGTAATCCAAGGGC
Right flanking sequence: Indices 145504 -- 146003
ACAAGGAACACATGAACCTGCTAAGGATCCATTCCACCTGCCAAGTAGACCAATCACAAGAGCTC
GGGCCAAGAAATTCAATGAAGTAATCCATATCCATATGCTGATTCAGCAAGCCAAGCAAGATGTG
GTGGAGAATGCGCTAACGCGCAACGGCTTTCGCGCTAGTTGCTCAATCCGTTGCTTGTTTGGTAA
GATTACCTTGGGAAGTCTCAGGGACTGACTGAACCGAATGTATAGCGTCAAGATAAGAAGCACGC
ACTCCTACTAGACATGGAAGGAGTAAACCTCAAATATGCTTTCTTCCCTTAGGTATGTTTCTAGA
TTCTAGTCCGAAGTCGGTCGTTGATAGATTTATTTCTTTTGCTTGCTCTCCGTTACTTTCCCTTC
CTATATTTAGAAATCGATGTAAAGACAATAAGAAAGTGGTTGAGACAGAAGATTCTTGGTAGTTT
ATTGGCTCTAAGTACAATGGGTACGTAAGTTATGTGTTTTGTTTC
Found at i:169256 original size:23 final size:23
Alignment explanation
Indices: 169222--169269 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
169212 GAGCATACTA
*
169222 TAGACTCCGCGAATACAAGTCAG
1 TAGACTCAGCGAATACAAGTCAG
*
169245 TAGACTCAGCGATTACAAGTCAG
1 TAGACTCAGCGAATACAAGTCAG
169268 TA
1 TA
169270 TTTGTCTCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (23 bp):
TAGACTCAGCGAATACAAGTCAG
Left flanking sequence: Indices 168722 -- 169221
CCCACTAGCATAACTATCCTACGCACGATTTTGAGTTGTCTGCTCTAATATTCGCACTGAAGATC
TGTGGGTGCCGACTTTTCAAAATCACCAGACAATAAAAGAAAAATGCATCAGGAATGAAATCTGA
CACAGCGTGGCTGGAACTAATTAAACATTACGATCTCGTCAAGGATTATGCAGCTAAGGAGTGGT
GGCTGAGGCAGTGGAAAGAGAAAAGCCAATATGGCGTGGTGACGAGTGAGGTGCAACTCTTGAAA
TAGATGCAGCAGATTTGTGCCTTGGTAAGAAGAATTAGTGGACAAACTGACAACGAGAGAGGGGG
GACCGAGCCAACGAGGAAGAGCACTGTTCTTATGCTAAAATCCATTATGGTACATACACCGGGGC
AGGATACCCGATAGGCATAGGCAAGGTGGAAGAGATCAAATAAGACATTGAGAAAAGGATGCAAA
AAAGAAAAGAACGAAGTTGCAAGAAAGAGAGAAAAGAGCATACTA
Right flanking sequence: Indices 169270 -- 169769
TTTGTCTCACCGTACGTCTTCTTCACCCCGACTTGCTTCTTTCTGCTCTTTTCATTCAAATAAGC
TCTTCCCACAACCTTTCATTGCCATTTGTCTTCGAATCCTCTTCGGCAACGCTGGGCCGGTCGAA
GGGCGCTTCCAGCTCGTTAAAGCAACCACAGGAGAAGAACCACAAGGAACGGCACTACAGGTATG
GTACGAACCATGCTCTAAGATTGATAAACTACATCATCCAAGACTTCAATACGAATCCATAGGTG
AGGAGAGCAAGCCAATGAAGTCAGCCCATTAGCTAGATTGGCAATAAGCATTACAGGAGTCAGTC
TGTCCAGTATGTAAGCCATGAGTCTACTACTTAAGCCTATGCAGTCTGTCCAGTATGCCTCATGC
TGTAGTATGTCCGATATGTCATGTAAGCCATGGAGTGTATGGACTAAGTAAAAGCAATGGGCTAG
GATTGGGACTGCCTACCTTCTACAACCATTCCTACAGGACACCAA
Found at i:184350 original size:23 final size:22
Alignment explanation
Indices: 184301--184352 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
184291 ACTTTAGCTT
*
184301 TAGAATGAGGAACGTATCGTATA
1 TAGAATGAGGAACGTA-CGAATA
184324 TAGAATGAGGAACGTA-GAATTA
1 TAGAATGAGGAACGTACGAA-TA
184346 CTAGAAT
1 -TAGAAT
184353 AGAAAGGCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 2 0.08
22 2 0.08
23 22 0.85
ACGTcount: A:0.42, C:0.08, G:0.25, T:0.25
Consensus pattern (22 bp):
TAGAATGAGGAACGTACGAATA
Left flanking sequence: Indices 183801 -- 184300
CTATATTCCTCCAAGAGGGAGGGGAAGAGCCCGAGTCAAAGTTCTTTGTTGACCAATCAAAGAGA
ATGAAAGAAATATAGAAAGAATGGATTAGTGTCAACTCCATGAATCGGTACAGGTAGAAGTAGAG
GGGGCATGCCAAAAAGAATTTGAGAAGCCTCGTTTCTGAGCTTTTACAGCATCTTTTGATTCAGA
AGCATCTCCCACGAAATCACATAACATAAGTGATCCTGCGGAACCGGCTTTCCTACACTCACTGA
TCCATTCAAAGGATTTTATTTTCTCACGACTGATCCGCACTTCAGCTCCGATATTAATAAGCACT
GCCTTCTAGCCAGTCTAGTCCCGGAGACATTATACTCTGGGTCTGGCATCGCCTCGCAAGATCAT
CTAGTCTAGATTTACTCGGGTGTGCCCGATTTCCATGATCCCTATTTCATAGCTTGGCTTGGGTT
GAAGGTGAAGTCTTTATATTCTAGTTAGAGTCACTACTTTAGCTT
Right flanking sequence: Indices 184353 -- 184852
AGAAAGGCGAATAGAAAGACTAGTTACTCGCTCTAAAGTATTATACGTGAACTATTCTCACAGAG
GAATGAAGGGAGCTGGAACCAGGCTGCCCAGGAAGGATTTCTGAGCTCTACTCTAGTATTGACTG
GCTTTCAAGGAATGGAGCTGCCTATATAAATAGAAAAAGCTTTGCCCAGCGAGAATTTCATTTCT
TTAAGTAAGCTGCTAGGTCTTATTTGATGAAAAGCAAGACAATCCACCATGGATCGGAGGGGGCT
ATATACGAAACTGAGGAGCTCTTACCTCTATTTATGATAATAGAATAGCTTTGGGTGGCTTCACT
TATCTGATAGCCAATGAGTCACTATTCCAATCACCGCCCCTCGCTCGTGCCCATCCATTAACGGA
ACGGACTTACCGTTACTAAGCTCGTAAAGAGGAGGGCTATCTTTCTTTGAGGTTGCGTATGATTC
TTAATTTGAAATGAATGAATCTGTTCATAAGATTTGGATCGAAGA
Found at i:188783 original size:5 final size:5
Alignment explanation
Indices: 188773--188797 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
188763 ATCGCCTATA
188773 TAAGT TAAGT TAAGT TAAGT TAAGT
1 TAAGT TAAGT TAAGT TAAGT TAAGT
188798 ATGGAAATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
TAAGT
Left flanking sequence: Indices 188273 -- 188772
AAAATCTCCTATCATCCAAAAACAAGGGGTTTCTTACTTCGGGTGGCCAGTCTGCTTTCAAGACA
GTTTCCTCTGCATAGGTTGAGGGGTTAGTCTTCTTGCTTGAAAGGCGGGGTATCTAATTTCGAAT
AGAGTTTCCTTGCTTGCCGCCTAGCTGATCTTGAAGATTGTGGAAGACTCCTACTGCCATCTAAT
GGTTCTTACCAAATCCCACTGTCCTTCTTTTGGGGTGCCGGGCTATCTACTATGGTATGCAAGAA
ATCAGCCATCTCTTCTATTGGAACCTTATGGTGACTATTTGCTCGCTCGGAAGTAGATCTGGATC
TGGATATTTACTATTAGTATCTCTCTTTCTGGAGTGCCGTTCTAAGGTTTCTCTTGACTCAAGAA
TAGTAGGTGCGGGTCTAGTAGACGTAGACAGACAGTGGCATGATTCATATTCCGGACTTTCATAT
TCCTCTACCTAAGATAGATCCGCGCTCGGTGCGCTATCGCCTATA
Right flanking sequence: Indices 188798 -- 189297
ATGGAAATTGGGAACTCTTTATAGGAGTGAGTTGCTCATCGGAAACTCAAAGTCAGCAAGCAGTT
CTTGGATTGGCCCGAGAAATCTCCATTTGCTAGTGCTCGTCCCACCATCAGCCTCATAGCATTGA
AAGGACAGGATGGCATCGATTCCATTCAAAACTGGAAGTGAAACAAAGTCAAGTAGTCACAGACC
CATTTATTCTTTTTTTGTCATTGGATTGGATACGTTACAGGGTTCGTTCACGACCCACACTCGAG
ACTGTTCATTTCATTTCCATATTCAATAGCAAGCACACTGTTAAGGCTCATCTTTATGCGGGTTC
TAAGCTAAGCTGGCACAGAAAAATTCTTGGATTATGGACACGCTACTGATCCTCATTGATCGACT
CGGGCCTGCCCCTATATATGTATTTATTTGATCAGGGCCTATTCCCACTATCACAACAAAAATAG
AATTCCCCGGGTGTCTACGGAGCTCACTTCTGAGATAGAGCTGGC
Found at i:204130 original size:5 final size:5
Alignment explanation
Indices: 204120--204145 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
204110 ATTTTGAGAC
204120 TTTAG TTTAG TTTAG TTTAG TTTAG T
1 TTTAG TTTAG TTTAG TTTAG TTTAG T
204146 AAATCCTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.19, T:0.62
Consensus pattern (5 bp):
TTTAG
Left flanking sequence: Indices 203620 -- 204119
AGAAGGAAACGTTGTAACTACTTACAAGAATTAGCTGCGTATGCAGGTGCATGCAATAGTCTTTT
AGTAAGGAAGAACGACGGGATTCCTTGGAAAGCTGGTAGTTCATTTCACTCTGTATCGAAAGTCC
CAGTATATTATATATCTGTGTACATCCATCAACAAATCTAACATTTCTTATCTTACATTGAAATC
GATAAAGACTAATAAGATGCAAAACCAGCATAACTTGTTCTTTGCGAGTACTGTGGGTAGACCGA
GGGATCGATCGGCATTTCACTAACCTTTAGAATTAATCAAACGTATGGCTAACCGATTCCTAGGT
CATAATTTAAAGCTTCACTTTTCTATAGCCTTCTAATTCTATCGGGCTAACCTATAGAAGGTTTA
TAAAAAAGGTACGGTGCAATCAGTAAACCTCTTACTGACCGGGCAGGGCAGACCAGATGAGCGAG
ATTGATTGAAAGCGCTGTGCCAACTTGCTTACAAGATTTTGAGAC
Right flanking sequence: Indices 204146 -- 204645
AAATCCTCTTCATAAGTTATTTCGTACAGGCTATTCAAGGTCTATTGGCTTTATTGCTTATGTGG
TACTTCGACCGCGAAGCCCCGCTTATGCACCGAGAAAGATCGTAGATAGGAAAGATCTGTTATGC
ACCAACGACGGCCCGCCCCTTCTCTTTACCTTTATCGTCTCATACCTCAGTCCATTGCTGGCTTG
AATGCTGTCTCTCTTCTTCTTTGCTCGCGAGAGTGAATAAGAGGACGACCCACCGGGGGGAGGAT
GGAATGAGTCGGCAAGGGGATCAACAATCTTCTTTCAGTAAAGGCCCACACATTCTCCTTAATAT
TGGGTGGGATAAAAGGACTCTGAAGAAGGAAACTCTCTTCCCGTCTTGCGTAACTGACCACTGCA
AATCAAGTCGAAAGTGCTTATATGCTTAACACGTTTTTGTCTCAATGACAGGCCGCTCGAACATT
GTCTGATTTTTTTTTGAAGAGACTCGATCTTATGTATCTACTTAT
Found at i:221856 original size:22 final size:22
Alignment explanation
Indices: 221831--221874 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
221821 CTTACTCGGC
221831 ATCTACTGAACATCACTTCTAT
1 ATCTACTGAACATCACTTCTAT
221853 ATCTACTGAACATCACTTCTAT
1 ATCTACTGAACATCACTTCTAT
221875 GCTGATCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.32, C:0.27, G:0.05, T:0.36
Consensus pattern (22 bp):
ATCTACTGAACATCACTTCTAT
Left flanking sequence: Indices 221331 -- 221830
GAGAATAATCAAATAGCGAAGGCCAAATAGAGAGTAAAGGAAAACAATGTGCTAACAGAAGCACA
GGGAAAAGCATTCACAGATAGCCCAGAACATAGGCATTGAGTCTAGTAAATAAAGTAGTGGAAAC
GGGCTAGCCAAAAGAAGGTACTAGTAAAGATCAGTCACACGGGATTCGTTTTTCATAGACGAATA
GGCTTTCGAGAGCAAAGGCCTTCCTTGGGCAAACTAGTTTCTCAATCAATGCTTATTCGCTTATT
TGTCACAATAACATACAACACGTTAACCGAGTACTAATAACGTAATTCCGTATCCTTGTTGTTCA
AGGAATAAAAGGAAGAAGATCTTAAACAAAATCCACAACTAAAGATAGTACTACTAGGCAGACAG
GGACCCGCCTGACTATTTCGTTTTCTTCACAGAAAAGATGGGATAAGCTTTTGAATTCAAGCGCA
GGGAGAACTACCAACAAGCACTTCAGAAACTCCAACTTACTCGGC
Right flanking sequence: Indices 221875 -- 222374
GCTGATCTTTCCTCTCTACCTATACAACTGAAGTTTCCAGCTTTCCAGCAAGGTATTGGGATAGT
TCACTCAGATTTTGAGATGGTTTTTGGGCAAGTGTTTAAAGACGGAACCTGGCCCAGTGTGACTT
CAGGTAAAGTATGGCTGCCTTGTAGGACAGGAGTTTACTTAGCTGCATGCATTCATTGCAGACCT
GGCTGCAAGCATCCATAGATAGCTGCCGAAGGTACTTGTCTTATCACTCTTTGGCAATCGAATTG
ACAGTGCATGTGTGGAAAAGAGAGCTAGTGGATTCCTTCTCGTTGTTTAGTCTGGAAATACACCA
ATAGCAACACAGAATGCTATTACGATACCTAAACTAACCCCTACTCTCCATTTTCTGTCTATATT
ATCCATAGGTATTTGTATTGCTGGTTCCTCTGGTGGTATGACCTCTTTCAACATAGCCATATTGT
TAAAACTATTCTCATCAAAGGTAAAAGGAGTATCTCCCCGGATTG
Found at i:222979 original size:15 final size:15
Alignment explanation
Indices: 222959--222992 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
222949 ATATACGGGC
*
222959 CATTAGAGAAAATCT
1 CATTAGAGAAAATAT
*
222974 CATTAGAGATAATAT
1 CATTAGAGAAAATAT
222989 CATT
1 CATT
222993 TGATCTATTA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.44, C:0.12, G:0.12, T:0.32
Consensus pattern (15 bp):
CATTAGAGAAAATAT
Left flanking sequence: Indices 222459 -- 222958
AATCCCACGACATATAAAGCAGTTGATCTGGTTGAATATCTATATTACAAGGTATAAACTTGTAC
CAAACTGTAGTGTAAAAACCAACTCTGACAAGTGCGAAAATACTACCATATACAGTATTGATTCC
TCCATCCATAGATGATTGATATAGTTGTCATTTTTATCAAACAATTGGTTAAATTATTGGATATG
AAAAAATATTTCTTTGATAATGCACTTTTATAGGCTGGCCATAACACTGTTTCTAACCACTTATT
ACCATCATCTATCCCGGGTGTAAATTGTTTTAAAGATAGCAAATCTTTCCAAGAATCAAACTTCC
ATTTATTTAATGTTGCGTTAAAACTGACAATAGGAGATGTCCAAAGATAATTTGCACCCAGGATC
ATAAACTTCATATGATATTTGATGAATGAAATCTTTATTAGTTAATGAATCCATATATAACTTAC
TATGATATGCTAGTTGATCATTTAACGATTTGAATATATACGGGC
Right flanking sequence: Indices 222993 -- 223492
TGATCTATTAGAAATACTATTATTAGATAATAACTTCTTATATAAACCCACTACTTTCCACAATA
ATGTTCTATTTACAGATTCCACTGATGTACTACATTCAATATCCGGTACTTGGAATATATTAGAT
ACACCTCTCTTGTCAAATACAAACTTTTCGAACTTACAATACAAATCCCTCATACGGTTGAAATC
GGTTGTCATGATTGCTATACTTTATTAAATTAATATTTGAAGGTTGGTGGGGATTTCCATTTTTT
AGAGTTGAAACTCCTACCCTAGTGCTCAATACTGTAGTGGTAGAGAGCTATTTTATCCCTAGTAT
ACTTTGTACGTACGGCTAGAGATTGAAGGGAATCAACTTAGTAAGCATATGCCTACTTTCTATGT
GAGTTAATCACGTGAACAGATAGTATCAACAGAGAAGTCACATAAGCACCTTCCAATCGAACTTC
TTTTGCTAATTAACAAGAGACCAGACAATACAATAGCTCTTTTCA
Found at i:223562 original size:17 final size:17
Alignment explanation
Indices: 223537--223610 Score: 67
Period size: 17 Copynumber: 3.9 Consensus size: 17
223527 CTATAATACT
*
223537 TATATGCAGAGAAACCC
1 TATACGCAGAGAAACCC
223554 TATACGCAGAGAAACCCTTTC
1 TATACGCAGAGAAA-CC---C
*
223575 TTACTTATGCAGAGAAACCC
1 -TA--TACGCAGAGAAACCC
223595 TATACGCAGAGAAACC
1 TATACGCAGAGAAACC
223611 TTCTCTTACT
Statistics
Matches: 47, Mismatches: 3, Indels: 14
0.73 0.05 0.22
Matches are distributed among these distances:
17 26 0.55
18 2 0.04
19 2 0.04
20 1 0.02
21 1 0.02
22 2 0.04
23 2 0.04
24 11 0.23
ACGTcount: A:0.38, C:0.26, G:0.16, T:0.20
Consensus pattern (17 bp):
TATACGCAGAGAAACCC
Left flanking sequence: Indices 223037 -- 223536
AACCCACTACTTTCCACAATAATGTTCTATTTACAGATTCCACTGATGTACTACATTCAATATCC
GGTACTTGGAATATATTAGATACACCTCTCTTGTCAAATACAAACTTTTCGAACTTACAATACAA
ATCCCTCATACGGTTGAAATCGGTTGTCATGATTGCTATACTTTATTAAATTAATATTTGAAGGT
TGGTGGGGATTTCCATTTTTTAGAGTTGAAACTCCTACCCTAGTGCTCAATACTGTAGTGGTAGA
GAGCTATTTTATCCCTAGTATACTTTGTACGTACGGCTAGAGATTGAAGGGAATCAACTTAGTAA
GCATATGCCTACTTTCTATGTGAGTTAATCACGTGAACAGATAGTATCAACAGAGAAGTCACATA
AGCACCTTCCAATCGAACTTCTTTTGCTAATTAACAAGAGACCAGACAATACAATAGCTCTTTTC
ATTTCCTATAATATAATACTGTACTTTATACGCTCCTATAATACT
Right flanking sequence: Indices 223611 -- 224110
TTCTCTTACTCGAAACCCTCTCTTCCCCGAAGACAGTCTTCCTCGCCAACCCATAGATAGGCGCT
TTCCTATATTATATATATGGATTCGTTCCCGGAGCCAGAGCGGATTCCATGAATTGACGTATATG
CTATGAGCGTAGTTATCAATCAGGTACGCCGGTAGCAAGATTCCATCCCATCCCTGAGGATAGTG
ATTTCTGGTATAGAGTATTTATAGAAAACTCGTATCAAAAATATCATACCAAAAAGAAAGAAGAG
ATAAATGAGCCTTGTTTCCCGAGAGAGACCGCCATCTCTCAGGACTGCAGTCTTATAGTCGACAG
CTCTATGTGGAGTTTTACAAGCCACCACTCTGGACCGTGGTCTTAGCTCTCACACCGAGAAAGCC
TGCCTTCCCCCCAGAAGAAAGTCTTTCTCTCCCTCGTTTCGTTGTTAAAGAGAAAACAATTGGAT
GCTAGTTTGAGGTGAGACTAGTATCTCAAGTAACTCAAAATATCT
Found at i:223592 original size:41 final size:41
Alignment explanation
Indices: 223539--223620 Score: 148
Period size: 41 Copynumber: 2.0 Consensus size: 41
223529 ATAATACTTA
223539 TATGCAGAGAAACCCTATACGCAGAGAAACCCTT-TCTTACT
1 TATGCAGAGAAACCCTATACGCAGAGAAA-CCTTCTCTTACT
223580 TATGCAGAGAAACCCTATACGCAGAGAAACCTTCTCTTACT
1 TATGCAGAGAAACCCTATACGCAGAGAAACCTTCTCTTACT
223621 CGAAACCCTC
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
40 4 0.10
41 36 0.90
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (41 bp):
TATGCAGAGAAACCCTATACGCAGAGAAACCTTCTCTTACT
Left flanking sequence: Indices 223039 -- 223538
CCCACTACTTTCCACAATAATGTTCTATTTACAGATTCCACTGATGTACTACATTCAATATCCGG
TACTTGGAATATATTAGATACACCTCTCTTGTCAAATACAAACTTTTCGAACTTACAATACAAAT
CCCTCATACGGTTGAAATCGGTTGTCATGATTGCTATACTTTATTAAATTAATATTTGAAGGTTG
GTGGGGATTTCCATTTTTTAGAGTTGAAACTCCTACCCTAGTGCTCAATACTGTAGTGGTAGAGA
GCTATTTTATCCCTAGTATACTTTGTACGTACGGCTAGAGATTGAAGGGAATCAACTTAGTAAGC
ATATGCCTACTTTCTATGTGAGTTAATCACGTGAACAGATAGTATCAACAGAGAAGTCACATAAG
CACCTTCCAATCGAACTTCTTTTGCTAATTAACAAGAGACCAGACAATACAATAGCTCTTTTCAT
TTCCTATAATATAATACTGTACTTTATACGCTCCTATAATACTTA
Right flanking sequence: Indices 223621 -- 224120
CGAAACCCTCTCTTCCCCGAAGACAGTCTTCCTCGCCAACCCATAGATAGGCGCTTTCCTATATT
ATATATATGGATTCGTTCCCGGAGCCAGAGCGGATTCCATGAATTGACGTATATGCTATGAGCGT
AGTTATCAATCAGGTACGCCGGTAGCAAGATTCCATCCCATCCCTGAGGATAGTGATTTCTGGTA
TAGAGTATTTATAGAAAACTCGTATCAAAAATATCATACCAAAAAGAAAGAAGAGATAAATGAGC
CTTGTTTCCCGAGAGAGACCGCCATCTCTCAGGACTGCAGTCTTATAGTCGACAGCTCTATGTGG
AGTTTTACAAGCCACCACTCTGGACCGTGGTCTTAGCTCTCACACCGAGAAAGCCTGCCTTCCCC
CCAGAAGAAAGTCTTTCTCTCCCTCGTTTCGTTGTTAAAGAGAAAACAATTGGATGCTAGTTTGA
GGTGAGACTAGTATCTCAAGTAACTCAAAATATCTCTGCTCAGTA
Found at i:233497 original size:18 final size:18
Alignment explanation
Indices: 233476--233513 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
233466 TCGAGGTGTC
*
233476 GACGGAGCTAACTTGTGA
1 GACGGAGCTAACTTCTGA
*
233494 GACGGAGCTCACTTCTGA
1 GACGGAGCTAACTTCTGA
233512 GA
1 GA
233514 TAGAGCTGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (18 bp):
GACGGAGCTAACTTCTGA
Left flanking sequence: Indices 232976 -- 233475
GAGACCGGTGCTAAAACCTTTTCTCGAGATATCTTCCAAATTATTAGGGTCCTTGCTCCGGATCT
TGTTCCCCCGGTGCGAAAGCAGTTGGTTCCGTAGTTTGAGAATTCTGCTAATTCCAAGTATTCCA
TTATTATTATTATAAAAGAGAATATAAAAAGTAAAGAGGAGAAGGCATAACCAGAAGAATTGTGA
GAAATAAGTCAATTTATCAAGTTGAGGCATTTCGATTTCCAATCAAACCAACCCTCAAGACAGAA
AAAGACTCCCTCCCAAAATAACCAAAAATACTAGTTGCCTTCTAACGCATAGACTAGAGCGTTTG
TCCCATCCTTATCTAGTGGGCCAATGACATTACTATTCTACGCGTTTTCTGAGGAGCAACATGAG
AGATAGACTTGACACCGACCCACGAAAACGAAACTTTTTAGTCTAGAAAGATTCCCAACCCGATA
TTGAGATCTGATGACTGAACACTCGTTTGAATAGCTCGAGGTGTC
Right flanking sequence: Indices 233514 -- 234013
TAGAGCTGTCTTCTTTCTCTTGGTTTCCATCCTTCCGTTACGAGATATCGTTTCGTACAATACTA
CTCTATGCAATATGCAATTTCGAGAAGAGAGCAGAGCTAGCCCACCGCATCCATCCAGCCTGAAA
GGATTCACTCAACTGGACTCGCGGCTCTAGGTGATCCCAATGGATCCGTACAGGGTGATTTGAAC
TGCTCCTCTCGAGAAGATCGACGGATCGGGCGAGCAAGCAGGGAGAGTGCAGTATTGTGCTTGCG
CCCTTAAATCAGAGAAATCGACAGGACAGATTTCGAGCCCGAAAAGAGAAAGTATCTCCTCTCCA
ATGAGAAAGTATCTCTCCAGCGAAAGAATCTCCATCTCCTTCCTTCGGGAAACAAACCTTCCTTC
CAGGTAGATAGCATTTCCACAGGAAAGAGAATCCGTATTGATTGACGTATTGAAACAATCAAGTC
CGTCAAGATTGACAGGCAAGTGCAAGTCCGTTGACATGACAGGAT
Found at i:243593 original size:11 final size:11
Alignment explanation
Indices: 243577--243604 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
243567 GTCGTCATGG
243577 GAAAGAAATAA
1 GAAAGAAATAA
243588 GAAAGAAATAA
1 GAAAGAAATAA
243599 GAAAGA
1 GAAAGA
243605 GATTATTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (11 bp):
GAAAGAAATAA
Left flanking sequence: Indices 243077 -- 243576
TGTTAGGCGCTATGAATTACAGGAAATTAAGTGGTTGACTTGGACAGCAGGCGGGTTACACGTTC
CACTGTGCCGAGATGTGAGGTGCAGGTGGTGATGATCACCCCGGGGTATGCGCTAGCGCCCTTGA
CGGGCACTCCAGGACCCGCCTACGCTCGCCCAGGTCGGTCCTCCGACCAGATGTGTGGATAACGA
GGCCACCTTCACAACCTTCTCCCTTCTATCTTTATCCAAAGTCAGGTAGAGCGGTTCGCTTGAGT
TGCTCAACCGTCCCTTTGCCCGGTGCTCATGACGCGCTACTCCACCGTGCTAGCGGCATAGGAGC
CTACTCAGCGTCAGCGGCTTCGTGCCGCACTGGAGTGATCCAATATGTGGTTCCGCACGTTCCAC
CACTTCTCCGTTCATTTCCAATACTGATCGTGAAACACCATGAGCAGCAGGATGTTGAGGTCCGG
AATTCGAAGTGAAATTCTTGATTTGCCCGTTCCTAGTCGTCATGG
Right flanking sequence: Indices 243605 -- 244104
GATTATTCCCCTAGAGCTTGTCCCACCTGTACTAAAAATGCATCTCCGCGCGTCTACCTGGCGCT
TTTATTAGCCGCCTTGCATGCAAGCGAAGCGCTATTGGCGGCAATTAATAGCTCACTGAGCGATG
ATTGATGCAGTCAGTCAGTGCCCTCGATTATTCCTGATAGAAGGATCATGGCGCCCCGGAAGCAT
TCCATCCAGCAGCAGCATCTCCTTCACAACCACGCGAGGACAAAACTGATGTTAGCTACATTCGA
GCGTTCACCGCACAGAGGCGATCTCGAACACTACCTATGATAATAAATCCAAAGGAAAGGTCGAT
AAAATGATTCAATCTGACTTTATCGGTATTCTGGATTGAGTAAAAAAGGGATATATGAAGTTCAA
GGCCTTGCCAAAACCGTCATGGCCCTATTATGTATAGGCCGTACTAAGCCAATAGCGAATAACAA
ACTCTTTCCTGCTCCCTCGACCTTAATTTAATTCACTCCCATCCT
Found at i:265203 original size:18 final size:18
Alignment explanation
Indices: 265182--265219 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
265172 ACAGAATATC
*
265182 AAAGATTCTAAGAAGGAG
1 AAAGATTCTAAGAAGAAG
*
265200 AAAGCTTCTAAGAAGAAG
1 AAAGATTCTAAGAAGAAG
265218 AA
1 AA
265220 GTCAGATATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.53, C:0.08, G:0.24, T:0.16
Consensus pattern (18 bp):
AAAGATTCTAAGAAGAAG
Left flanking sequence: Indices 264682 -- 265181
AATGAAAGAAATGAGCTTTTTTGCCCCTTCACTCACTTCTGAATGACTCCTTTAGCACTCCCTTT
TTTATATAAAAAAATAGATACAGTTTACCTTTACCATACCTTCCAACCAAGCAAGAGTGTTTTTT
GCAAGCTTTTTATAGCCGCTCTTCCTAGGGCAGGGCAGCAAGTCTCTTATCCATATTGAAAGCAG
AAGTTTGAATATGAGCTAAAGTTCAGTAAGAACTAAGCTATTGGTGGAAAAGAAAATGGCACGTA
TCACTATGGGGAGGGGATAGGAAGTAAGAAGCGAGAGTTCGTTTTTGACAAAAATAACAAATGGG
TAGGAACAAAACCTCTTCATATAGGAGAAGGGGATGTGAAAAGTTTGAATCCTACTTCCTATACT
AATACTAGTACTAGTACTAGAAGTTAATTAAAAGCTTATTAGAGCAAAATGAAGATCTCCAAAGA
GAATTGGCTAATTCTGATCAGATGAATTCTGATTCACAGAATATC
Right flanking sequence: Indices 265220 -- 265719
GTCAGATATGCCTGAGAAGAAAGCAGATAATCAGAATAAATAGATAGATGAGATCATCCGTAAGA
TCAAGAAATACCTGTAATAAAAGTGGTAGATCTATCGATCTATGAGGGACCCCTTCCAAGGGTAC
CACCCGAACCATATCTAGCTTCACTATGCTGTATCCCCCTACCATTCATTTTCTACAGCCCGACA
CAAGGGTGTAAGTTCGGGGGAAGAGCTAATCCGCTAGCAGGAGAAGAGTAGCGAGTTGAAAAAAG
ATCGGATCAGTCCTCTACGAGCCGAGTAGCTCTCTTCTTCGATGCTGGCATTCCTATCTGCCGAG
TAGTCCTATCATACTATCCGAAAAGATTAAGGCTGTGGAAAAAAAACCTTAGCTGGTCTTTACTT
CAACACCGCTGATCACTTGGCTTTGCTTGCCGCTGCGTTGACTCTCCACTAAAGTAAAGTCAAGT
AGTGACTCGCCCCTTAGCTCTCCATAATAATAGTCTCAGCTTCAT
Found at i:284729 original size:18 final size:18
Alignment explanation
Indices: 284702--284736 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
284692 GCTCGTAACA
*
284702 TTAGTCGTTACTCGCTCG
1 TTAGTAGTTACTCGCTCG
284720 TTAGTAGTTACTCGCTC
1 TTAGTAGTTACTCGCTC
284737 AGCTCATTAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.26, G:0.20, T:0.40
Consensus pattern (18 bp):
TTAGTAGTTACTCGCTCG
Left flanking sequence: Indices 284202 -- 284701
TAGACTCCGTTCGTGTTAGGACATCCATAGCCAATAGTAATAGTAGCTAGTAGCTTCGCCCCCCC
TTGCCCCCGGAAAGGTTCTCATTCCTCACTGGATCTAGTTGACTTGCTGCTACAGCAATCAATCT
ATCTATATGTTCCGGACGGAAGAGAGAGTTTCCTACATTCCCATTCCCATGAACTGAACATCGGG
TACCAACGATCTGGAATCCCGTGCTACAGATATGCACCTGTGCGGAACCAACCTGGCAATCCTCC
TGTCTATTCTTTCTATCTGGACTAGCGCTTCCCACTGGAGCTTACTACTTGACTAGAGCACTTGA
ACTTGTTAGTTTCATTAGTCAGTTTCCTAGCATAGCAAAGTGAGTTTCCCATCAACGGATTATCA
TCCTGTTGTTTCCATGAACATCAGGTACATATATGAACCTGTCAACGGAGCGGAACATATGATAT
GAACCAAGTAGATTCGTCTTTTTGCTCGTCAATATGCTCGTAACA
Right flanking sequence: Indices 284737 -- 285236
AGCTCATTAGTAGTGAACTATGATCATTTGTGAGGAGTATGTTTTCAACTCTATGTATGTCAATT
CGAGAGTAGAGCGATCTATGTCAACCAAGAGCAGAACTCTCTCTATTTCCGGCACAGGCTTTCTT
TCAATCAAGAAGAAGATTATTTCAGATTTTATCACTATCCGGACTGCTATCTACTATCTACCTAT
CTATCTACCCGGGCTCGTTGTGAGGCGGGACCCAACCCTCCTCTTCACTCCACTGCTTCAACAGA
AATGGATCCATCATCTGCTACCCATGAGTAATAACGTTACGAATCTACCACTGATCCCGAGGGCA
AGTATGAAAAAGAGAGTCAAGCAAGGTTGGATTCGTATGTTCCATTTGAGTAAGCCTCTGATGCC
CTGCGCACATAGCTTCTTGCATGCCCGATGGCAGATCTCCCAACCTGGAGTATATTCCCGGCCCC
GTAGCTTAGCTTAAGATCTTCGTATTTCAAGTCCACCGGCATGGG
Found at i:285770 original size:6 final size:6
Alignment explanation
Indices: 285759--285785 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
285749 ACCAAGGCAG
285759 TATTAC TATTAC TATTAC TATTAC TAT
1 TATTAC TATTAC TATTAC TATTAC TAT
285786 GGAAATGGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.33, C:0.15, G:0.00, T:0.52
Consensus pattern (6 bp):
TATTAC
Left flanking sequence: Indices 285259 -- 285758
CGCCCTGTCCTCTAAGATATGAGATCCACCCACACCCAAACCTGGAAAAGCGGCAGGCTCTAGTC
GAACTCCATACCAGAAGAGAACCCTTTCCGTTGGAAGAAAGAGAAAAGGGGCCGGGCTATGCACT
TCAAGAGAACCAACCCAAGAAGCACTCAATAAACTATTATATATAGTCCTGGCCACCAGATCAAG
CTAGCAGGAATGGGTACTACAGCACCAAGAAAGATCGATGGAAAGGGATATGAAACTATTTTAGA
TGCACGCTCTAGCTCTAAAGCAAGCTTATACGCACTCATAAAGGTGCCGTCTAGTGCCGTGAAGA
TAAACCGATTCTCTGACCATCCCTCGAGATAGCCTTTTATTCTCTTTAAGGAAAGGATCTGGGAG
CCATATAAGGATGAGTTAGCCGTAGGATATGATTCCTTCTTGCTTGTTGGGAAGGGAATAAGGGG
ATCGAGAATGATGCTGCAAACAAGATAAGGGATTCACCAAGGCAG
Right flanking sequence: Indices 285786 -- 286285
GGAAATGGAAATGGAAATGGAAATGGTATAGAGCTAGCCCAGAAAAGAGAATCCATGGCATGGCT
ATTCACTCAATCAAAAGAGAAGGTCATAATCTGGAAACTATTCTCATACAGAAGGGTTCTACGCT
AGGAATCACTAAACTAGACGAGCACTTCTCAAGTGCCAGCTAGGAAACTGTCTGTACTGTAAACC
AACCACCCGTAGAGAACTTTTAGTAGATGGAAGCGAGCTCCCTAGTCCTATTCGACCCACTTGGA
ATTCCCTTATGTGAATCATTCATGTAGCATTGATATACGAGAATTCGAGATTGCTCCACCGGGCC
TGACTAGTAAATACAGTATACGGGGAAGAGAGTCTTCTGAACCTGAAACCTATGAAGCAAGGAAA
TCACTCTACTCTGCAAGCTATTCCACTGGAAAGGACAGGTTTCTAAAGGAATGGGATTAGTACTA
CTTAATTAAGGAAGGGATGAGTGCTGTCTTCCGGGCGGGGGTTCT
Found at i:285793 original size:6 final size:6
Alignment explanation
Indices: 285784--285811 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
285774 TACTATTACT
285784 ATGGAA ATGGAA ATGGAA ATGGAA ATGG
1 ATGGAA ATGGAA ATGGAA ATGGAA ATGG
285812 TATAGAGCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.46, C:0.00, G:0.36, T:0.18
Consensus pattern (6 bp):
ATGGAA
Left flanking sequence: Indices 285284 -- 285783
CCACCCACACCCAAACCTGGAAAAGCGGCAGGCTCTAGTCGAACTCCATACCAGAAGAGAACCCT
TTCCGTTGGAAGAAAGAGAAAAGGGGCCGGGCTATGCACTTCAAGAGAACCAACCCAAGAAGCAC
TCAATAAACTATTATATATAGTCCTGGCCACCAGATCAAGCTAGCAGGAATGGGTACTACAGCAC
CAAGAAAGATCGATGGAAAGGGATATGAAACTATTTTAGATGCACGCTCTAGCTCTAAAGCAAGC
TTATACGCACTCATAAAGGTGCCGTCTAGTGCCGTGAAGATAAACCGATTCTCTGACCATCCCTC
GAGATAGCCTTTTATTCTCTTTAAGGAAAGGATCTGGGAGCCATATAAGGATGAGTTAGCCGTAG
GATATGATTCCTTCTTGCTTGTTGGGAAGGGAATAAGGGGATCGAGAATGATGCTGCAAACAAGA
TAAGGGATTCACCAAGGCAGTATTACTATTACTATTACTATTACT
Right flanking sequence: Indices 285812 -- 286311
TATAGAGCTAGCCCAGAAAAGAGAATCCATGGCATGGCTATTCACTCAATCAAAAGAGAAGGTCA
TAATCTGGAAACTATTCTCATACAGAAGGGTTCTACGCTAGGAATCACTAAACTAGACGAGCACT
TCTCAAGTGCCAGCTAGGAAACTGTCTGTACTGTAAACCAACCACCCGTAGAGAACTTTTAGTAG
ATGGAAGCGAGCTCCCTAGTCCTATTCGACCCACTTGGAATTCCCTTATGTGAATCATTCATGTA
GCATTGATATACGAGAATTCGAGATTGCTCCACCGGGCCTGACTAGTAAATACAGTATACGGGGA
AGAGAGTCTTCTGAACCTGAAACCTATGAAGCAAGGAAATCACTCTACTCTGCAAGCTATTCCAC
TGGAAAGGACAGGTTTCTAAAGGAATGGGATTAGTACTACTTAATTAAGGAAGGGATGAGTGCTG
TCTTCCGGGCGGGGGTTCTAGCAACTAAAGCAGTGGAAATGTTCT
Found at i:298807 original size:21 final size:21
Alignment explanation
Indices: 298781--298822 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
298771 TAGAATGGCT
298781 ATGCCTACTGATCTTGACTTA
1 ATGCCTACTGATCTTGACTTA
298802 ATGCCTACTGATCTTGACTTA
1 ATGCCTACTGATCTTGACTTA
298823 CCTACCTTGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.14, T:0.38
Consensus pattern (21 bp):
ATGCCTACTGATCTTGACTTA
Left flanking sequence: Indices 298281 -- 298780
TCTCCAGCTCTGAGGCTTATGTGGGCGTAACCATTTCTGTTTGTGAGCTTAGCTTTCCGTCGAGA
TGCGTGAGAATAGTTGACCATTGCTTTTTCCTCTACCGGCACTATTATCGATCAGGTTGTCTCTG
TTTGCGGGTCTAAGGAAAGGAAGAAAAAGATCCAATAAGTTCGATGGGTATTGGTCATAGGCTTG
AAAGAGTGTTTCATAGCTAAGGTATCTTCCGGATATATATGTGCGAGATCCAATAGGGTCATAAC
CCAGTGCTTTAGCGGACTCTGGTGCCAGATCGTTTCTCAAATCATAGAGAATTGATAGAGCTAAC
CATATGAAATGCATCGATTTCACTATGCATCATTACCAAGGCCATTGCCAGGGAAAGGCTGAACC
AGATCAAATAGCAGCAAATAAAATAGTAGATGAAGGTCTAAGAGATGCCTACCCAAGCCTAGCTG
ATATGATAATATCACCTGACATCTAGACTAGTGCTTAGAATGGCT
Right flanking sequence: Indices 298823 -- 299322
CCTACCTTGGCATGCAATAGTTTCGCCCACCATTAGATTAGTGGTATATTCTTCTAGAAATATGG
ATTCCTATAAGCCTAGAAGGAAGTATGACTAGGACTCATGTGTGCTTCTGCCTCTATTATTGTGG
GCTGGAAATCCAGATGGTCAGATGAATGAATCAAGTCCGGATAGATAGATAGGATCCCAACGATT
CCTGTCTACTTGCTAAAATAGTTTTAGATGGCCTACCCCCACAAGAGATATTCAATCAAGCTGAA
GGGAAAACCCCCTCAAGCAGAGTCAAAAGACACAGTGAAAGAAGCCCGCTAACCCACTCTTCTTT
CCCCCCACCTACCCGGTAGGTAAGTAGGGGCCTCGTCATCTCTATTTTCCTTCCCAGGAAGACGG
AGAAACTACACCTTATTTTTACGAATTAGAAAACGAATGAGATCAGAAAGGCCATCATTGGGGCA
AACGATGCAATAGCTTCGGTGAGAGCAAAGCCCAAAATGGCATAA
Found at i:306877 original size:18 final size:18
Alignment explanation
Indices: 306854--306890 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
306844 CTGCTAAGAA
*
306854 ATATGAGCTGTTGTTCTT
1 ATATGAGCTGTTGCTCTT
306872 ATATGAGCTGTTGCTCTT
1 ATATGAGCTGTTGCTCTT
306890 A
1 A
306891 AAATCATTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.19, C:0.14, G:0.22, T:0.46
Consensus pattern (18 bp):
ATATGAGCTGTTGCTCTT
Left flanking sequence: Indices 306354 -- 306853
TTGCAATATGTATATTCCCCGAGGAAGGAAGGCTTGACATGAATACAGCTTAGTAGCTATCCATT
CTTTCACACTCCGACGGCACACGCCATAATCTTTCATCAGAAGGAGCTTCATCATCATATCATAT
GGTAAGGGGCATACGGCGAATTTGTAGAGGGACGGGTAAGGCAGTTCTGTGTTGAAAATTTGCAT
ATCTCCATGATCAGGATCTCTGGCCAAAGGATAATCACAAATCACCAGCTGATAAGCAAGCAAAT
AGAGTTGTCTCTTTCGAGTCAGCATCCTAGTCTCCATTTCAGATTGTAACAGAACTGGTTGGTCT
CTGGCACTTTGTGAGTGGAGGTCCTCCGAAACAGGAATAGACTGGCACTAGGCGGAAGAGGAAGA
GAAACAGAAGCGGAGACTACCTAATCTAATAAGTGTCTGGTTTCATCGAATAGGGATGCTCGCTT
AAGTCTACTTGTACTTGAATTCCGCATAGCCCGTTCTGCTAAGAA
Right flanking sequence: Indices 306891 -- 307390
AAATCATTCCTTATGAGCTATGGCAAGTGAGCTGAGTCTAGTTTACTCGCCTTCTCCATCACTAG
ATGAGTGGGCAGTGCCGGACTCGAGGGATGGGATTCCCGACCGAATTGGAAGCATAAAAGCGCCA
TTCCGAGATTGATAGATATATCAATCTAAATAGGAATTGGAATAGGAGAAGAGCTAATTGGGATT
GGAGAAGAAGTTCCTTTGGAATGGAATTGTAGAACAAGTAGACAGGATTTCTACGAAACAGGATA
ATCCGTTGATTGGGAACAAGTCCGGATTGGATTCCTGCGTCACGGATCAGTAGCAGCAAGTAGAT
CAAAGCTAGTTCGGTAACATAAGCTCGGGAACAGGACTATTTGCCGGGGGATGATCACTTGGTTC
CGTAGGTTTCTTGATCTCATATCTATGGGCCAGTCCGATCCGAAAGGAGGAATGATGGTAGATAC
CCACTAGATAGCCGTCTTCCACTGCCTCGAGTCCAATCTCTCTCT
Found at i:307845 original size:19 final size:19
Alignment explanation
Indices: 307813--307850 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
307803 TTTGGCAGCG
*
307813 CCGAAGCAGAGGAAGGAAC
1 CCGAAGCAGAGGAAAGAAC
307832 CCGAAGCA-ATGGAAAGAAC
1 CCGAAGCAGA-GGAAAGAAC
307851 GACGACCTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 1 0.06
19 16 0.94
ACGTcount: A:0.45, C:0.21, G:0.32, T:0.03
Consensus pattern (19 bp):
CCGAAGCAGAGGAAAGAAC
Left flanking sequence: Indices 307313 -- 307812
GTCCGATCCGAAAGGAGGAATGATGGTAGATACCCACTAGATAGCCGTCTTCCACTGCCTCGAGT
CCAATCTCTCTCTATTGGCTGGCCAGAGGTGTCCAACACCTTCAGTACCGTTCTTTGGACGAGAG
AAGCCTTATCCTTCATACTTTCTGGACGTGTTGGTTTCCAATCTGACATTTTATCAGAAGGTTCT
GCCAATTTATCCCTACTGTAGTTTTGTGTCGCTTGCTCTTGTTTGCTGCTGACCTCTATTTTCTT
TCCCTCGATTAAGAGGCTAAATGAACTGGGTGCTCGAAAGTTTGTTGTGTCCGACGTCGCTCGGT
TGTATACCGTACGTTCGTGCTCTGGAGTTCATGCCTACAGGGGAGTGTTCAGCATCCGCGAATCG
AGTCACTGAAGGTTACAACAAGAAATTGAAGAGGATGGTCGAAAAGATGAACCAGGAGATGGGTC
CAGAGAGCAAATTTGTGTACGTAAATACGAAGGAGTTTGGCAGCG
Right flanking sequence: Indices 307851 -- 308350
GACGACCTAGGAGGTAGTAGTAGTACGAAGCCGGAAGGTGGTTTGATTCAGAAGTTGAGTGAGGA
GGCTTCGACCGTCGCCACAAAGATTCTTATGAGGCATGCTTCTGACGGGCTGCCACGCGGGAGGT
ACTGGAAGACTTTTCAAAGGGCTAAGTATAGGCACCGGGAAAGAGTGGGGGGTTGAAGTGGAGTT
GCCACGACGATTTCTGGTAAGTCGATTGCGGAGGAACTGAGAGGGAGAAGGCCGGGCTTCCCAGA
TTGTGCAAATTAGCCATTCCACTTCGGGGCCGTGTGCACATAGCATGGAGGCGATGCCTTATGCC
GTGGCGTCAATTCTAGCTTCTGATGCGGGAGCTTCTAGCTGTTCGCTTTTAAATTGGCACTTTGA
GTTGAGGGCGGAGCGTGAATTAAGTAAAGGCTTATTTGTTCCTGAATGTTTCATTTTTATTAACC
AAAACCAACATTTATCATACTTGCAACTAAGACCTCGAATGTTTG
Found at i:330719 original size:21 final size:21
Alignment explanation
Indices: 330695--330758 Score: 112
Period size: 21 Copynumber: 3.1 Consensus size: 21
330685 ATAGTACTAC
330695 TAACTAATACTAATATATAGA
1 TAACTAATACTAATATATAGA
330716 TAACTAATACTAATATATAGA
1 TAACTAATACTAATATATAGA
*
330737 T-ATTAATACTAATATATAGA
1 TAACTAATACTAATATATAGA
330757 TA
1 TA
330759 TATAGAAATA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
20 19 0.46
21 22 0.54
ACGTcount: A:0.52, C:0.08, G:0.05, T:0.36
Consensus pattern (21 bp):
TAACTAATACTAATATATAGA
Left flanking sequence: Indices 330195 -- 330694
CTTACCATTTCCGAAGGAACTGGGGCTACATTTCTTTTCAATTTCCATTCAAGAGTTTCTATCTG
TTTCCACGCCCTTTTTTTGAGACCTCGAAACATGAAATGGACAAATTCCTTCTCTTAGGAACACA
TACAAGAAAAAGGATAATGGTAGCCCCCCCATTAACTAATTTATGAATTTCATAGTAATAGAAAT
CCATGTCCTACCGAGACAGAATTTCGAACTTGCTATCCTCTTGCCTAATAGGCAAAGATTGACCT
CTGTAGAAAGACTGATTCATTCGGATCGATATGAGGACCCAACTCCGTTGCATTGCCAGAATCCA
TGTTCCATATTTGAAGCGGGTTGACCTCTGTGCTTCTCTCATGGTACAATCCTCTTCCTGCTGAG
CCCCCTTTCTCCTCGGTCCACAGAGAAAAAATGTAGGACTGGTGCCGACAGTTCATCACGGAAGA
AAGAACTCACAGAGCCGGGATCGCTAACTAATAGAATAGTACTAC
Right flanking sequence: Indices 330759 -- 331258
TATAGAAATAGATATCTAGAAATAGAAACGAACTAATATATAGATAATCGAAATCGAAAAGAACT
GTCTTTTCTGTATACTTTCCCCGTTCTATTGCTACCGCGGGTCTTATGCAATCGATCGGATCATA
TAGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGACGACTCACCAAAGCACGAAA
GCCAGTTAGAAAATGGATTCCTATTTGAAGAGTGCCTAACCGCATGGATAAGCTCACATTAACCC
GTCAATTTTGGATCCAATTCGGGATTTTTCTTGGGAAGTTTCGGGAAGAAATTGGAATAATATCG
ATTCATACAGAGGAAAAAGTTCTCTATTGATGCAAACGCTGTACCTAGAGGATAGGGATAGAGGA
AGAGGGAAAAATCGAAATGAAATAAATAAAGAATAAAGCCAAAAAAATAAGTCGAAGATAGAAGA
GCCCAGATTCAAAATGAAGAAATGGAAACTCGAAAAGGATCCTTC
Found at i:330745 original size:20 final size:20
Alignment explanation
Indices: 330699--330759 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
330689 TACTACTAAC
*
330699 TAATACTAATATATAGATAAC
1 TAATACTAATATATAGAT-AT
330720 TAATACTAATATATAGATAT
1 TAATACTAATATATAGATAT
330740 TAATACTAATATATAGATAT
1 TAATACTAATATATAGATAT
330760 ATAGAAATAG
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
20 21 0.54
21 18 0.46
ACGTcount: A:0.51, C:0.07, G:0.05, T:0.38
Consensus pattern (20 bp):
TAATACTAATATATAGATAT
Left flanking sequence: Indices 330199 -- 330698
CCATTTCCGAAGGAACTGGGGCTACATTTCTTTTCAATTTCCATTCAAGAGTTTCTATCTGTTTC
CACGCCCTTTTTTTGAGACCTCGAAACATGAAATGGACAAATTCCTTCTCTTAGGAACACATACA
AGAAAAAGGATAATGGTAGCCCCCCCATTAACTAATTTATGAATTTCATAGTAATAGAAATCCAT
GTCCTACCGAGACAGAATTTCGAACTTGCTATCCTCTTGCCTAATAGGCAAAGATTGACCTCTGT
AGAAAGACTGATTCATTCGGATCGATATGAGGACCCAACTCCGTTGCATTGCCAGAATCCATGTT
CCATATTTGAAGCGGGTTGACCTCTGTGCTTCTCTCATGGTACAATCCTCTTCCTGCTGAGCCCC
CTTTCTCCTCGGTCCACAGAGAAAAAATGTAGGACTGGTGCCGACAGTTCATCACGGAAGAAAGA
ACTCACAGAGCCGGGATCGCTAACTAATAGAATAGTACTACTAAC
Right flanking sequence: Indices 330760 -- 331259
ATAGAAATAGATATCTAGAAATAGAAACGAACTAATATATAGATAATCGAAATCGAAAAGAACTG
TCTTTTCTGTATACTTTCCCCGTTCTATTGCTACCGCGGGTCTTATGCAATCGATCGGATCATAT
AGATATCCCTTCAACACAACATAGGTCATCGAAAGGATCTCGGACGACTCACCAAAGCACGAAAG
CCAGTTAGAAAATGGATTCCTATTTGAAGAGTGCCTAACCGCATGGATAAGCTCACATTAACCCG
TCAATTTTGGATCCAATTCGGGATTTTTCTTGGGAAGTTTCGGGAAGAAATTGGAATAATATCGA
TTCATACAGAGGAAAAAGTTCTCTATTGATGCAAACGCTGTACCTAGAGGATAGGGATAGAGGAA
GAGGGAAAAATCGAAATGAAATAAATAAAGAATAAAGCCAAAAAAATAAGTCGAAGATAGAAGAG
CCCAGATTCAAAATGAAGAAATGGAAACTCGAAAAGGATCCTTCT
Found at i:330769 original size:14 final size:14
Alignment explanation
Indices: 330752--330784 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
330742 ATACTAATAT
330752 ATAGATATATAGAA
1 ATAGATATATAGAA
*
330766 ATAGATATCTAGAA
1 ATAGATATATAGAA
330780 ATAGA
1 ATAGA
330785 AACGAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.55, C:0.03, G:0.15, T:0.27
Consensus pattern (14 bp):
ATAGATATATAGAA
Left flanking sequence: Indices 330252 -- 330751
TCTATCTGTTTCCACGCCCTTTTTTTGAGACCTCGAAACATGAAATGGACAAATTCCTTCTCTTA
GGAACACATACAAGAAAAAGGATAATGGTAGCCCCCCCATTAACTAATTTATGAATTTCATAGTA
ATAGAAATCCATGTCCTACCGAGACAGAATTTCGAACTTGCTATCCTCTTGCCTAATAGGCAAAG
ATTGACCTCTGTAGAAAGACTGATTCATTCGGATCGATATGAGGACCCAACTCCGTTGCATTGCC
AGAATCCATGTTCCATATTTGAAGCGGGTTGACCTCTGTGCTTCTCTCATGGTACAATCCTCTTC
CTGCTGAGCCCCCTTTCTCCTCGGTCCACAGAGAAAAAATGTAGGACTGGTGCCGACAGTTCATC
ACGGAAGAAAGAACTCACAGAGCCGGGATCGCTAACTAATAGAATAGTACTACTAACTAATACTA
ATATATAGATAACTAATACTAATATATAGATATTAATACTAATAT
Right flanking sequence: Indices 330785 -- 331284
AACGAACTAATATATAGATAATCGAAATCGAAAAGAACTGTCTTTTCTGTATACTTTCCCCGTTC
TATTGCTACCGCGGGTCTTATGCAATCGATCGGATCATATAGATATCCCTTCAACACAACATAGG
TCATCGAAAGGATCTCGGACGACTCACCAAAGCACGAAAGCCAGTTAGAAAATGGATTCCTATTT
GAAGAGTGCCTAACCGCATGGATAAGCTCACATTAACCCGTCAATTTTGGATCCAATTCGGGATT
TTTCTTGGGAAGTTTCGGGAAGAAATTGGAATAATATCGATTCATACAGAGGAAAAAGTTCTCTA
TTGATGCAAACGCTGTACCTAGAGGATAGGGATAGAGGAAGAGGGAAAAATCGAAATGAAATAAA
TAAAGAATAAAGCCAAAAAAATAAGTCGAAGATAGAAGAGCCCAGATTCAAAATGAAGAAATGGA
AACTCGAAAAGGATCCTTCTGATTCTCAAAGAATGAGGGGCAAGG
Found at i:367899 original size:18 final size:18
Alignment explanation
Indices: 367876--367910 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
367866 CCAGAAGTGG
367876 TTACTCTTACTAATACTC
1 TTACTCTTACTAATACTC
367894 TTACTCTTACTAATACT
1 TTACTCTTACTAATACT
367911 AAGGTTGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.46
Consensus pattern (18 bp):
TTACTCTTACTAATACTC
Left flanking sequence: Indices 367376 -- 367875
ATGACCTAGCCTAGGTAGTCCTATGTTTGACCAATGCTGCCTTGTATGTCTTGATCCAAGATTTC
TCAGCAAAAAAAGACATGGGATTATTGATCAATTCACCATCCTCTTCATCTGAGTGTGCTTCCAC
TTTATCGTTTGTGGCATGTGCATTATGCAACAAGTAGATTCCTGATAAATGAACCTTCTCCACAG
GACCAGCAGGTACCTCAGCAGTCCACTACTACTACTGCTGGACAGCCTAGTTCTTCTACACCACC
AGCTATAGCTCCTAATGATCCATCATCAATCAGTTCGACTTCAGTTCCACCTACCAAGCCGAAGC
AGCCATTTCCAGAACGGTTTGAGAAGTCAAGTGAAGACAAGCAGTTTGCTAAGTTTCTTGAGATG
ATTCAAGATGCGCAGATTACCATCCCCATCCTTGATGCTGTCTTACATGTTCCGATGTATGCAAA
GTTCTTTAAGGACAAAGAAGCGAAACATTAACGAGCCAGAAGTGG
Right flanking sequence: Indices 367911 -- 368410
AAGGTTGATTTAAGTTTCTCTGGTTCTTGATTGAGTCTTTGTCTTGCAGTTGCAGGAGTGATGTC
AAACCTCTTGCTTGAGTTGTCTGTATTGGAAGTCGTGTAAGCGGCTTCTTCCGAATTTGCCTTGC
CTCCGGGTCTAGTACGTATGAAAAGATGTCAGCGTCGTGGCGATTGCCTTTCCTGGTCTGGTGGT
GAAGGATTCTATTCCCGAGCGGCTAAGGTCCAATCCGGTATTCTATTTCGTCTGTGCGAGCATTA
AAACCAACCATTGCCGACGTCCTCATATTCTCTAATTTGGCTAATCTCCGTGCATTAGCAGGTTA
AGCAAATCGATTCCAACTCAGTGGCAGATAGGCTGCAACATTTCTTTCCTAATAACTAAGACTTT
CTTTACTACTTTACCAACCCATATCACGCTAACTGATACTGTGCCTAGTGATTGATGAAGGTCAC
AGAGGAGTAAGAATAGCAAAGCCTACAAATAATGTGATAAGAGTT
Found at i:372883 original size:5 final size:5
Alignment explanation
Indices: 372875--372905 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
372865 GGTTACTACT
372875 GTAAA GTAAA GTAAA GTAAA GTAAA GTAAA G
1 GTAAA GTAAA GTAAA GTAAA GTAAA GTAAA G
372906 GTGCCGGAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.58, C:0.00, G:0.23, T:0.19
Consensus pattern (5 bp):
GTAAA
Left flanking sequence: Indices 372375 -- 372874
GTCAACTTTTGGACCATGGTGAGCATCACTTGATCAGATCTTAGGACTCTCTATCGAGGAAAAAC
GAAATTCTGTGGTCCCGGCGAGATCAAGTTTTAGAATCTATCGTCTTCCGTTACGAGATATCGTT
TCTATCTATGACATTCTATGTATGCAGAGGGACCTGGCCAATGGGGAAGAAGAACTTGTCGAAGG
ATCTCCATACCTAGAGGTACCGGTGATTCACCAGATCTAATCTAGAGTCGTAGTCAACGTCTTTA
GGAAAGATGAGTGACCTTGGCATAGGTTTGCTGCTTACGGTTTCAAGTAAAGACAGTTTCCTATT
CGTAGGTTTCAGGGTTACTCTTCTGGCTTGAAGGGTTACTCGTATTGGTTCTTCTGTTTGCTGGT
CCAGAAAGGGAAAAGGTTGATTACTCATTGGCTAAAGGGAAGGTTGATTACTCATTGGCTGGCTG
TGCTAGTGAACTACCTCCAACTATGGTTATGGTATGGTTACTACT
Right flanking sequence: Indices 372906 -- 373405
GTGCCGGAAATAATCTAGTATTTTCCTCACCTCAGTAGGAAGGATTTGTGGTTCCTCATAGCATT
TCCACCATATGTTGCATTTCTGTATTCGAATTTGAGATAGCGAGTCAAGGTATTCTTCCTCAGTC
TCGTATTCTCCATTCGAAGCGCCGTGTATTCGTTCTCTGTTCCGGAGAAAGCACTCGTTTCGTTT
GTTCCGGCTCGTGATTCGCGTATTGGTATTGTTCAGTTCGCTAGGATAGTGGGAACTGACACATT
GATTCGTAGCAGAAGCGCCGTATGCCATTCCATACAAAGCAGTGGTCAAAATCGATTCCTCGTAT
TCTGGTTCTGGTTCTGGGAAACAGGTCTTTCGTATCGAGAAGTGATAAGTCTTTGGTAATCTTGG
TAATCAGAAGTGGCAACTCGGCAATCGTCCAAGGAAGATTCATAGGATTGGTCTCTTAGGAAAAC
AAGCATCTCAATCAAGTATCAAGTCAAAGTCATCTGAGTTCCCGC
Found at i:381987 original size:5 final size:5
Alignment explanation
Indices: 381978--382022 Score: 63
Period size: 5 Copynumber: 9.0 Consensus size: 5
381968 AGCCACGACT
* * *
381978 TAGTT TAGTT TAGTT TAGTA TAGTA TAGTA TAGTA TAGTA TAGTA
1 TAGTA TAGTA TAGTA TAGTA TAGTA TAGTA TAGTA TAGTA TAGTA
382023 CTACGAGGAT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
5 39 1.00
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (5 bp):
TAGTA
Left flanking sequence: Indices 381478 -- 381977
GTCAACTAGTCATGGTATAGTTGTTTACATGGTAGCTGGTTGGATCGACAGACCAGAGAAAAGAG
ATTCTGGGTCATCCCCATGAGCTGATACAGCTCTTGTTTGGATCGCCTTCTGGGCAGCTAACTAA
GGAAAGGATTATCGGGATTAATTCCAATTGTGGGTTGAGAAGGATGGCAAGCTGGTTACTCAAAT
TGGAGATACCCTGTTCTAGGAATGAAAGGGTTCATCACCCCGGAACGAGGTAAAGGGCTACCCCT
TGACCGAGTGAAGGCGAGCCTGGATCCTGAGATTGATGGATGATGGAATGGATCCAACCGCGAGG
TACCCATTCTAACCATGAAGGGTAAAGGAGCCAAGCAAGCTATCAGGCTGATACACCACTTGGTT
ATCTTCTTTAAGATCATCTCTCTTTCCTGCATTCTTAGCTAACTCGGCTTTTTAGTCAAATCGCT
AAGCTAAGGGTAAGCTGCTTTCGGGCTAGCTTGTAAGCCACGACT
Right flanking sequence: Indices 382023 -- 382522
CTACGAGGATTCTGGCGGGGAAATGCGCAGCGGAAAAAGGGAGAAATGTTCTTTCCAATGAAGAA
GGCCGCTAAGGTTGGCTTTCTTTCCTCCATCATTACTGATGTTTTTAGCTTCTAAATGGAATCTG
AGGAAGGGAATAGCTCTTGTTCATTAGCTCTTGTAAGAAAGAGTGGAAACCACATAGCAATAAGC
ATCTCCTTACTAGGCGGTCTAGTTCACACAGACAGTGCTTACTTAAGATGGATCAATTGACCTGT
CTTGGTTTTCTAACAATTGCTTACTCTGCTGCTTTCGATTTGTGAGCCAGGTATATTCTATTTGT
ATGTATTTGCAAAATGCCTATGTCTCTAATTTCTGCTTCTTAGGTTGCTGGCGTTGGCCCCAACT
GAGTCGGCTCCATACATCCAACAGATGAATGGCTAACTCATACCGCCCCGGCAAGGAATGGCTCG
CTCTTTCCTAAAGCTGAGGTGAGGGGATGAGCCATTCCTCTCAAA
Found at i:384210 original size:5 final size:5
Alignment explanation
Indices: 384202--384245 Score: 81
Period size: 5 Copynumber: 9.0 Consensus size: 5
384192 TCAATCTACT
384202 ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG -TAGG
1 ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG ATAGG
384246 TAGAGAGTAA
Statistics
Matches: 39, Mismatches: 0, Indels: 1
0.98 0.00 0.03
Matches are distributed among these distances:
4 4 0.10
5 35 0.90
ACGTcount: A:0.39, C:0.00, G:0.41, T:0.20
Consensus pattern (5 bp):
ATAGG
Left flanking sequence: Indices 383702 -- 384201
TGAACAATAGACTCTAGCCCCACCAGGTAATCTGGGGCTTTAAAGGGCGACCCGCTTAACTTTAC
TGAAATGAGGTAGCTAGAGAAAATCCATGAAATGGGTTGGAATTAAGATGTGCGCGCACTTCTTC
TCAAAAGAACTACTAGGCAGGCCATCCAGGTAGGCGGGTAATTCTCTCCGTATGGCTGGAAATGC
ATGCTCTCACTTCGAGTTTCAATTCAATCTTATCGCAAACGCACTACTATGCTATAGCTATATCT
AGGAAAAGCGGCAATACAAAGCCAAGATCTTCCTTACTAAACTTAACTCATAAGTTTAAGTTAAT
GAGGGCTAATCCGTCCGCAGTTTTCAACTGGTAAAGCTTTCCCTGTCTCTTCGGGACAAATAAAA
GAAAAAGTAAATGCAAGACAACCTGAAAGGAATTCCTATGTATGAGTTAGTTCGATTCCATACTC
GGACTGGTATATATAAGTGCTCATCACTACTCGACTCAATCTACT
Right flanking sequence: Indices 384246 -- 384745
TAGAGAGTAATTCTCCGAAAGAACTACTAGTAAAATATGTAGGTAGGGCTTGGGCAAGTAAGTAA
AGTAGGCATGAGTTATCTTTTCCTACGGCCTACCGAGTCAATCTATTCGGACAAGTAAATAAGTC
TGGGCATTCCTTCACTTCAGGTAATTCGATAAGTAACTACGTTCATTCAATGCTAGGGCTCTCCA
CTTTTTGTGAAATTACAAGGGGGAAAAATGCTCTCTATCTATTCCAATATAGACTTGTTTGTGGA
CCTACCTTCTTTTAGTTAGCAAGTTCGTAAGGCAATACAAATCCAAAAAAGCTAGGAATTGAACC
AACCCACTTGAAATTCTCGTAAAGAGAGAGAGAGTGTTGTTTTCTAAAACTGGATATTTTATAGC
CATTTTCAGTGCATCTAGATCGTGCGGGCTCTTTCTTAATTTCATGTCCGTCCCGGCTACTCAAA
ACTCTGATTCAGGAAAGAAATGCTAAACAAAGAAATGAGCAAACG
Found at i:388368 original size:5 final size:5
Alignment explanation
Indices: 388358--388394 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
388348 CAATTTTCAA
388358 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TA
1 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TA
388395 AAGATGAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.00, G:0.19, T:0.41
Consensus pattern (5 bp):
TATAG
Left flanking sequence: Indices 387858 -- 388357
GAAACATTCGATAAGTTATACGTTACAAACTAACACTGCGGGCACAACTTCATCGTGGTTCGACT
CTGCGATTACTCGACTCTCTCCTCGATTCTGTTGTCCCTTGCCGCCTTAGGGTGAGTAAGCGGCT
CTAGTCTCTCTCTCCTTTACGATCTTAGTCGAGATCTCCCTGCTTAACCCCTTTCAAGATGTTTT
GTTATGTGTTACCTTTTTTTCCCAGAATGATCGGCCTCCATGGAGGGTCCTTACCTCAACATGGC
CATCATACAGGTAAACAAACTTTTCATCGTTATGAGTGATAAAATACGAATTATTTATATAATCG
ATATATTCAACAGATCCTTCTAGTTGGTTTGTAGATAATAGACTTTGAAGACCTTCTAGGTTACA
TACAAAATCATCGTACTTGAAGGCTATAAATACTTCGTTATACCAACGGCTATATTGTACTCCTG
GATACCATTTATCAAACACTGTATCAATTCAATTTCAATTTTCAA
Right flanking sequence: Indices 388395 -- 388894
AAGATGAAATAGAACTTTAGTTAGTTCTCCTACGGGAGAGACCCATGGGTAATTTATCATATTAT
GATTCTGAATAGAATAGATTGGTAGACTAACAACCTGTCCGGTTAGATCTTTTATAAGACCATCG
GGGATAATACCATCAATATATGCTAATATATCAGTTTGATTTGTATGATAGAAACTATCACTCAA
CTGTATTGTATCTTTACAAGTGCTTTAACGTTATTCTGTTCACCTAAGCCTTTATAGTGGCCTTC
CTTGAGATCCCTCAACTTAGTGAGTTGCGGGGGTGTGTAATATCCATATCCATCTACTAAGACTA
AGACGGTGTTTAATAACACTTTTGCTAACGCGTAGAAGTGCATCAGATGCAAATCTACACTTATA
GACATGTAAATCATCACCGTTCACACATTCTGTGGTTAAGACCCCTCTATCTTCTTCCATTTCCA
TTTCCATAGTAACTAACTGATAGAGGAAATTCTCTTTCTTTAAAT
Found at i:397514 original size:6 final size:6
Alignment explanation
Indices: 397496--397532 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
397486 AAGCTGTTCC
397496 TAACCA T-ACCA TAACCA TAACCA TAACCA TAACCA TA
1 TAACCA TAACCA TAACCA TAACCA TAACCA TAACCA TA
397533 GTATTTTAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.49, C:0.32, G:0.00, T:0.19
Consensus pattern (6 bp):
TAACCA
Left flanking sequence: Indices 396996 -- 397495
TGCCAGAACTACTACTAAATGCCAATGCTAGTGCTAAGCTTCAAGTACTACTCAGAAATCTTATG
CATAGGAAATCCTATCTATATAGATAGTGGTTTCGTTATCCTCAAGTCACTCAATAAACTCTTTC
CTACTTTCGTTAGACTTCTATCGGGTAGCTGCTTACACCTACTTTCCTATTATAAATTGCTGCTA
CTCCCTATGTTTCCTATTTTTGCGGCTACCTCCCTAGTGAGTGAGTCCTCCCACCCAAGCTAGAA
ACCTATACCCAAGTTAACTCCTTTCTACTATTTGTTTTCGTTCTTATACTGATTGCTGTTTTTCA
CTGTCTCCTATTCATGCTTAGCGCCCTGGGTATCCTTTGAAACTAGGCCGGCTATCAATAGTTGG
ATATGAAGTAAGTGAAGAGCGAAGTCATTAAGAAAGAAAAAAGGGTTTCTAATATTTCAGTGAAT
AAGCCTGAAAGAAATTGCACTTGTTGAGATAAGTCAAGCTGTTCC
Right flanking sequence: Indices 397533 -- 398032
GTATTTTAGATCTCAGTCGGTCCACTCAAGCTTACCAGATTGTTTGTAAGGTCTCGCGCATCGTT
GATACTTGGATGTTAGTGGTTCAAAGATAAGAACTATTCGAAATTAATTCAAAAGGAATGAGTTT
TTTTGAGTTACGTCTGTGACCTCGGGAAAGTCATCTGCTACTCTGCTTCTCGACACGAAAGCAGG
GCAATGCTCCATTTTTGATAATTCGTCCTACCCTTAGCTTTGCTACTTGACTCGGAACAACGGTT
CGGAGTTCGCCAGAATACGACGACATGCTGAGTTCTCAACGACTAGCATGAATTGAAGGACGCTG
ATTGCCGTTGTACCTATTGATAAAGGATTGGACAACTCGACACGGACTACGCAACGGGCTTCAAG
GAATTGAAGAATCAACTAGTCACTACGCTGCATACTCGTACCAGGGAATGTTGCAGACCGACCTT
CGTTGCTGGGCTGGAATAGAAACTGACGTATGGAGGACTTGTGAG
Found at i:413223 original size:21 final size:21
Alignment explanation
Indices: 413183--413223 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
413173 TCCGTCGATC
* *
413183 CACAACTTTGGATGCCCAATG
1 CACAACTTTGGATACACAATG
413204 CACAACTTTGGATACACAAT
1 CACAACTTTGGATACACAAT
413224 CATACACAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.34, C:0.27, G:0.15, T:0.24
Consensus pattern (21 bp):
CACAACTTTGGATACACAATG
Left flanking sequence: Indices 412683 -- 413182
TGTCGATACCCGGGGGCCTTATCAAGGGATTCATTCTTTTTTGCACTAATGGAGGGCTCTCTTAT
GTTCTACACAAATGAGTAACGTATAACGTGTAGAATCTACGTTACTCACTTGCTCGCATTCATTA
TCTCTTTCTAGCGCGAAAGCTAAAGCGCATCCGTTTTCTTACTCTGAACAGGCAGGATTTCTTGA
TAGCTATCAAGCCGTTGCGGCGCATCCTCTTGCTGGGTGCCGGGCAAATTATCTATGTTACAGTC
TATTAAAAAAAGGACTTCTAATAAGAAATTCTTCCGCTAAAGAATAGGCTCGCCTATAAATAGAA
GCTTCGGCGCACTCTCCATTTTGCGGGACAAGTGCCGAGTCAAAGCGATGGATATCGCAGCAAGA
CTCGCCATAATACCTCAGGAACAGCAGGCTCTAGAAAACGATAAGCTTGCATTACTGCAAAGAAA
GTTTAGATTTCCTTCAGGACCCCCTGTTTCTCTATTCCGTCGATC
Right flanking sequence: Indices 413224 -- 413723
CATACACAGGATGTTCGGAGGCAAATCCGCATTCTTGAAATGCGGAAGAGGGCGCTGCTGGAAGA
ACAGCAATCGCTCATCGTGAAGGCTGCCCTCCGCGGTGACCGTAGATCCTGAAAAATAGAAAAAA
GTAGTTACTCGTCTATCTCAACGTAAATGAACGAAGTCACTTAAGTCTTCCTACTACTGCTCCTT
CTTACTTATTTTCGTTTTTTCAGGATCTAAAGAAGAAGAGGTTTTCTTAGCGGGCGTGAATCCGG
TAGCTTCTACTTCTGTTCTGTTGTCTCACTTATGAGGAGCTGGTACTTCCTGATCAAGAGTGTAG
TGAGCATAAGTATTGTATTGTTCAGTATTTTCTTTTCAGGTGTGGTGTGTAGAGATATTGCCTTT
ATGAATAATACTTATGTATTGCCTCTTCTTCTTGTTTATGAATAATACTTATGTATTGCCTCTTC
TTCTTGTTGTAGAAGAATACTGATGTATTGCAAAGACCTGTTGTT
Found at i:413661 original size:37 final size:37
Alignment explanation
Indices: 413611--413709 Score: 164
Period size: 37 Copynumber: 2.7 Consensus size: 37
413601 AGATATTGCC
413611 TTTATGAATAATACTTATGTATTGCCTCTTCTTCTTG
1 TTTATGAATAATACTTATGTATTGCCTCTTCTTCTTG
413648 TTTATGAATAATACTTATGTATTGCCTCTTCTTCTTG
1 TTTATGAATAATACTTATGTATTGCCTCTTCTTCTTG
* *
413685 TTGTA-GAAGAATACTGATGTATTGC
1 TT-TATGAATAATACTTATGTATTGC
413710 AAAGACCTGT
Statistics
Matches: 59, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
37 57 0.97
38 2 0.03
ACGTcount: A:0.24, C:0.14, G:0.14, T:0.47
Consensus pattern (37 bp):
TTTATGAATAATACTTATGTATTGCCTCTTCTTCTTG
Left flanking sequence: Indices 413111 -- 413610
CGATAAGCTTGCATTACTGCAAAGAAAGTTTAGATTTCCTTCAGGACCCCCTGTTTCTCTATTCC
GTCGATCCACAACTTTGGATGCCCAATGCACAACTTTGGATACACAATCATACACAGGATGTTCG
GAGGCAAATCCGCATTCTTGAAATGCGGAAGAGGGCGCTGCTGGAAGAACAGCAATCGCTCATCG
TGAAGGCTGCCCTCCGCGGTGACCGTAGATCCTGAAAAATAGAAAAAAGTAGTTACTCGTCTATC
TCAACGTAAATGAACGAAGTCACTTAAGTCTTCCTACTACTGCTCCTTCTTACTTATTTTCGTTT
TTTCAGGATCTAAAGAAGAAGAGGTTTTCTTAGCGGGCGTGAATCCGGTAGCTTCTACTTCTGTT
CTGTTGTCTCACTTATGAGGAGCTGGTACTTCCTGATCAAGAGTGTAGTGAGCATAAGTATTGTA
TTGTTCAGTATTTTCTTTTCAGGTGTGGTGTGTAGAGATATTGCC
Right flanking sequence: Indices 413710 -- 414209
AAAGACCTGTTGTTGTTTTATTTCTTTATTTCTTCCTTTTCTCGAATAGTAGTTGTTAGCTTTGT
CTCTAGCATGTTGGTTTGCTTCTAGCATTTAGTAGAATAAGTTGCATTAGCAAGTTCATCATTTA
ATAGAAGATCAAGAAAATGAAAGATCAATGAGATACCTGTCCGGATAGTTGGGAGAGTGAGCTCT
GCCCTTAAGACAATCAGAGACTGAGTGATGCCGCGGAGAATAGAGATATGTCAGTTGGGTAGAGA
AGGATTCAGAGGTATAGTAAAGTAGCCAAGCAAGCTATCGTGAGCAGGAATCAATCCTGAAAGAG
AGATGAGAGTAAGCATCCCGCAGTCCACCGTGCTTGGAACTGAGTCCCGCCGAAAGAGGTTATTC
TTTTTGGCTTGAACTGCTTTGAACTAGCGGTTTTATTTCTATTCACGAGAGTACTTCGCCTGTGC
TGCTTCCCGTAAGCGAAAGTCACTCTCGCTTAACGATATGAGTTC
Found at i:433225 original size:7 final size:7
Alignment explanation
Indices: 433213--433278 Score: 114
Period size: 7 Copynumber: 9.1 Consensus size: 7
433203 AGAAAACGCG
433213 TATAGTA
1 TATAGTA
433220 TATAGTA
1 TATAGTA
433227 TATAGTA
1 TATAGTA
433234 TATAGTA
1 TATAGTA
433241 TATAGTA
1 TATAGTA
433248 TATAGTA
1 TATAGTA
433255 TATAGTA
1 TATAGTA
433262 TATAGTA
1 TATAGTA
433269 GTAGTAGTA
1 -TA-TAGTA
433278 T
1 T
433279 CATTGGCCAA
Statistics
Matches: 57, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
7 49 0.86
8 3 0.05
9 5 0.09
ACGTcount: A:0.41, C:0.00, G:0.17, T:0.42
Consensus pattern (7 bp):
TATAGTA
Left flanking sequence: Indices 432713 -- 433212
CTTCCGGGCTCTTTTCCCCCGGCGGCTAGTTTCAGCATAAAAGGAAGAAGTCGGGTCCGCGCGGT
TCGCCTTTTCGAATGCAGCAGTGTTTTTGGCTTTGGCAATACCAGCTAGCTAGCTACTTACTTGT
GTGGGAGTCCTATAAAGAAAAGCCTGAGTTATAGACTGACTAAAGAAATCCACCTAAGCCGTAAG
TTTTTGTTACAGCTGGCACACCTGCTTGCAAACTAGAAAATCTGATTCTAGTAGAAAGTGGACTA
AGTCTTAAGAGAGATAAGCCGGTCTTTATACACTGGCCCTACTTCGAATTCAGTCAGTGGCCAGA
TGCATTGTAAGCAATTCCAGTCCCAGCTGCTGAGGTGGCGTAGTCAGCCCTACCTATACCTAAGT
ATTGAACAAAACCAACCATTTATATTATCCTGCATATTAATTAATACTTTCGTTAGAAAATAGAA
AAACCAACGGAAAATCAAGTCTCATGTTGCTCCTCAGAAAACGCG
Right flanking sequence: Indices 433279 -- 433778
CATTGGCCAAAGTAAAGTCGATGGGACAAACGCTGTTCGTTAGAACTAGCATTTTGTTTTGTCAT
GGAATCAAGTCTATTTGTTCGAATGTTCTTTTTTTCGTTTCGTTGGAAAAACCTACGCCCACATA
TTGATCTTTAAGTCTCCTTTCTCTTTTGGGAGCAGAGCTGAAAAAGATGGACAGTAACGATCGCG
TAATATCAATTTATCGGCCTCGTCATCGAAAGCGGCTTCCAATTGCTCGGAAATTCTCAGCTATA
TGGGGGACTTTGATGGTGAGCAAAAAGAATTGATCAAGAAATTGGTAAACTTTCGCATGATCGAT
GGTAAAAGAACGAGAGTTCGTGCTATTGTTTATAAAACTTTTCACCGCCTAGCTCGAACTGAACG
CGATGTAATCAAACTTATGGTTGACGCCGTAGATAATATAAAGCCAATATGCGAAGTGGTCAAAG
TAGGAGTCGCAGGTACTATTTATGATGTTCCTGGGATTGTAGCCA
Found at i:434275 original size:12 final size:12
Alignment explanation
Indices: 434258--434286 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
434248 ACAAAGATTT
434258 TACTTTGACTTA
1 TACTTTGACTTA
434270 TACTTTGACTTA
1 TACTTTGACTTA
434282 TACTT
1 TACTT
434287 AGGATTAGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.24, C:0.17, G:0.07, T:0.52
Consensus pattern (12 bp):
TACTTTGACTTA
Left flanking sequence: Indices 433758 -- 434257
ATGTTCCTGGGATTGTAGCCAGGGATCGTCAACAAACCTTAGCTATTCGTTGGATCCTTGGAGCA
GCTTTCAAACGACGTATAAGCTACAGGATAAGCTTAGAGAAATGTTCATTTGCTGAGATACTGGA
TGCTTACCGAAAGAGGGGAATTTCACGTAAGAGAAGGGAGAATCTTCATGGACTGGCTTCCACCA
ATCGGAGTTTCGCGCATTTCAGATGGTGGTAAAGTGATACCACATAAGGAGCTCTTCCTCATTCA
GTCATACTCAACAAAAGTCAGAAATGTTTGACCCTGATCCTTTTTTCATCTTCATATAGAAAGAA
AATCGGCCTTCCTCATACTCCCCCCTTCATTCATGGAGTTGGAGGAATCCACAAGAGGCCTGCCC
GTTCATAATTGCATAAAAGAACCATTCTTTTTATGAAAACAAACAAGCAAGGGATTGAGCAACTA
GCGCTAGGCGCATCCTCTTGCTGGGATGGTTTGAGACAAAGATTT
Right flanking sequence: Indices 434287 -- 434786
AGGATTAGGATCAGCTTGCGAATTTGCAGCACCGTATCTATATCTATATCTATATCTATATCTAT
ATCTATATCTATAGTAGAATCAAGGGCAAAGAAAGGCAAGTCTCATTAGCCTTCGTCGATGGGAC
AAACGCTGTTCGTTAGAACTAGCATTTTGTTTTTTCTCGGTAAGAAGGCTGCGTGTTCAACAATG
GGTTCGGCAACTACCATCTGTAGTGACAAGACCGGTACACTCACTTGAAATCCGGTAGTAACATT
GTGTTCTTTCACCTCTTATGAGTCTCGGAGCAAACAACAAAGCATCAGATGAGAAAAGGATCTTC
TCAACCTCTTACGATTTCAATTGACCAATGCCATAGTATAGTAAAGATCCGCAGTACAGGTGTAA
CAGCAATCAAGCTACTAAGGATAAGGATAAGGATAAGGATAAGGAAGAAGTGCTCTTTATTTACA
ATATGGGCTTTCGTAAGCATAAATATCAAAAGAGAGGATACCACA
Found at i:434332 original size:6 final size:6
Alignment explanation
Indices: 434321--434364 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
434311 TGCAGCACCG
434321 TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA TA
1 TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA TATCTA TA
434365 GTAGAATCAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.34, C:0.16, G:0.00, T:0.50
Consensus pattern (6 bp):
TATCTA
Left flanking sequence: Indices 433821 -- 434320
CAGCTTTCAAACGACGTATAAGCTACAGGATAAGCTTAGAGAAATGTTCATTTGCTGAGATACTG
GATGCTTACCGAAAGAGGGGAATTTCACGTAAGAGAAGGGAGAATCTTCATGGACTGGCTTCCAC
CAATCGGAGTTTCGCGCATTTCAGATGGTGGTAAAGTGATACCACATAAGGAGCTCTTCCTCATT
CAGTCATACTCAACAAAAGTCAGAAATGTTTGACCCTGATCCTTTTTTCATCTTCATATAGAAAG
AAAATCGGCCTTCCTCATACTCCCCCCTTCATTCATGGAGTTGGAGGAATCCACAAGAGGCCTGC
CCGTTCATAATTGCATAAAAGAACCATTCTTTTTATGAAAACAAACAAGCAAGGGATTGAGCAAC
TAGCGCTAGGCGCATCCTCTTGCTGGGATGGTTTGAGACAAAGATTTTACTTTGACTTATACTTT
GACTTATACTTAGGATTAGGATCAGCTTGCGAATTTGCAGCACCG
Right flanking sequence: Indices 434365 -- 434864
GTAGAATCAAGGGCAAAGAAAGGCAAGTCTCATTAGCCTTCGTCGATGGGACAAACGCTGTTCGT
TAGAACTAGCATTTTGTTTTTTCTCGGTAAGAAGGCTGCGTGTTCAACAATGGGTTCGGCAACTA
CCATCTGTAGTGACAAGACCGGTACACTCACTTGAAATCCGGTAGTAACATTGTGTTCTTTCACC
TCTTATGAGTCTCGGAGCAAACAACAAAGCATCAGATGAGAAAAGGATCTTCTCAACCTCTTACG
ATTTCAATTGACCAATGCCATAGTATAGTAAAGATCCGCAGTACAGGTGTAACAGCAATCAAGCT
ACTAAGGATAAGGATAAGGATAAGGATAAGGAAGAAGTGCTCTTTATTTACAATATGGGCTTTCG
TAAGCATAAATATCAAAAGAGAGGATACCACACCAGATACGGTGCAACATACTTGAGTGGAAAGA
GGAGAGTTTTTCCTCCGAGGGCGAGTTCGATCAGGCAGACATCGC
Found at i:434703 original size:6 final size:6
Alignment explanation
Indices: 434692--434721 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
434682 ATCAAGCTAC
434692 TAAGGA TAAGGA TAAGGA TAAGGA TAAGGA
1 TAAGGA TAAGGA TAAGGA TAAGGA TAAGGA
434722 AGAAGTGCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (6 bp):
TAAGGA
Left flanking sequence: Indices 434192 -- 434691
AAGCAAGGGATTGAGCAACTAGCGCTAGGCGCATCCTCTTGCTGGGATGGTTTGAGACAAAGATT
TTACTTTGACTTATACTTTGACTTATACTTAGGATTAGGATCAGCTTGCGAATTTGCAGCACCGT
ATCTATATCTATATCTATATCTATATCTATATCTATATCTATAGTAGAATCAAGGGCAAAGAAAG
GCAAGTCTCATTAGCCTTCGTCGATGGGACAAACGCTGTTCGTTAGAACTAGCATTTTGTTTTTT
CTCGGTAAGAAGGCTGCGTGTTCAACAATGGGTTCGGCAACTACCATCTGTAGTGACAAGACCGG
TACACTCACTTGAAATCCGGTAGTAACATTGTGTTCTTTCACCTCTTATGAGTCTCGGAGCAAAC
AACAAAGCATCAGATGAGAAAAGGATCTTCTCAACCTCTTACGATTTCAATTGACCAATGCCATA
GTATAGTAAAGATCCGCAGTACAGGTGTAACAGCAATCAAGCTAC
Right flanking sequence: Indices 434722 -- 435221
AGAAGTGCTCTTTATTTACAATATGGGCTTTCGTAAGCATAAATATCAAAAGAGAGGATACCACA
CCAGATACGGTGCAACATACTTGAGTGGAAAGAGGAGAGTTTTTCCTCCGAGGGCGAGTTCGATC
AGGCAGACATCGCAATGGATGGTTCCAATAGGAATAGTAGTCCAGTGATTGTCAGTGCATATTCA
TTAGTATACGATACTTAATACTGTTGCATAGTCTAGGTTACCGAATAGGAATAGCATAGCAAAGA
ATCCTACGCTAAGGAATGTGTCACCTACTAGGTTCACAGTAAGGGCCGCCCTTAATAGCAGACTT
GTTAGCTTGGAGTCGTGTATATCATAAGTTGATTAGTAGGTATGAGCTTACCCCGATACCTTCTC
AACCTAGGAACATAATTAGGTAGTTGTCCCCAGCTACGAGCACAAGCATAAAGAATGTTAACATA
GAGAGGTCTGAGAAGAATCGTTGGTTGTGTGTATCTCCTGCCATA
Found at i:445974 original size:34 final size:34
Alignment explanation
Indices: 445930--445994 Score: 121
Period size: 34 Copynumber: 1.9 Consensus size: 34
445920 GGTCGTAGGG
*
445930 AGAGAGGGTTCTCGATACCGGGCATGGAAAAGGC
1 AGAGAAGGTTCTCGATACCGGGCATGGAAAAGGC
445964 AGAGAAGGTTCTCGATACCGGGCATGGAAAA
1 AGAGAAGGTTCTCGATACCGGGCATGGAAAA
445995 TAAGTTCCTT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 30 1.00
ACGTcount: A:0.32, C:0.17, G:0.35, T:0.15
Consensus pattern (34 bp):
AGAGAAGGTTCTCGATACCGGGCATGGAAAAGGC
Left flanking sequence: Indices 445430 -- 445929
CTAGTCTAGCCAAGGGAACGGGTATCACGTATTTCCTTGAAGGCAGCCTATAACCAAGCGGAGAT
GCTTCTGCCTTTTGGGGAGGCCTGTTTGTTGTACAAGAGGAGAAGGTTCGTATCTCCTTTCCGAA
AAGATGCATCTATTTTCCTATCTTTGGCCAAGGTAACCCGTATTGGACAAGCTTGCCTTTTGTGG
GAGCATCGTTTCGAAAACTAGTCTAATTGATTTCTTTTTATTTAGGAGATGCTTTTCCGTTACTT
GACTTTCACTAGTGTGATGCCGATCTCTTACTCGAATGCTTCTGCCACTTTAGGAAGGGATAGAG
GAAACAAACTGGGAATAGGAATTGATAGCGGTAGCTGTAGATAGGAGATAGGAGTGCGGACCAAC
ACAAATACTCGAATAAACTGAGCCCTGGCGATAAGAAAGTATTTCACAAGTTCCGAAGTGCCGTT
CAATTCAATTCAAGGAAGACGCATCCCTGAAAGAAGGTCGTAGGG
Right flanking sequence: Indices 445995 -- 446494
TAAGTTCCTTTGGGCTTTTGAGTCGGAGGAGACTGGCCACCTTTCCTACGCAAATCTTCAGCGCA
AATGCAAATATGACTTGAGATTGGAAATAGCAATTCCAGGCATCCATGCTTCTTTAGGCCCAGAC
CCTATAAACCAACTTTAGGAAATCTTATGAAATACGCCGGTCTTAGTCTTAAGCAGCCTAGCACT
ATCGATCAAAGCGACAACCCTCTAAATAAACTTCCATTTTCTTGAACACGGGTAAATGCCATTCT
ATCTCAACTATGGCGCATTTGACCGAGGTTTTCGTCTCAAGTCCACTCCTGAAGCCCTGCCGATT
GAAGCAGAAAGGCTCTTCTTATTCTTTTTAGGGTATGGTATCGGACTCGAAACCTTCAAAGTCGC
TGCTACGTGCTCTGTGGTGCGTCTCAGAGCCCTATTCCATGTGGGGGTTGGAAGACATTTATTTG
ATCCCAGAGGGAGGAATAATTAGACCTCCCTCTGGGTTGAGGATA
Found at i:456415 original size:5 final size:5
Alignment explanation
Indices: 456405--456439 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
456395 AGACTAATAA
*
456405 ATAGT ATAGT ATAGT ATA-T ATAGT ATAGT ACAGT A
1 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT A
456440 CGCTTGATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.37
Consensus pattern (5 bp):
ATAGT
Left flanking sequence: Indices 455905 -- 456404
CGATGGATAAATCCGCTTTTCAAAAAGAAAAACCTCGATCTTCAAGGTGCTGGAGGGAAGCATAC
CTACTACCAGCTTAGTTCAGAGTTGCCTCAGCGCGCTCGAGTAATAACTGGGAAAATCAAGGCAG
TCTTGAATTAATTAGAAGAGCTTTCTCATCAAAGATAAAATAAACTATATATGAGAAGAGAAGGC
TGTGCTTATTTGATTCCCTCCTATTCTTTGATACCGCTTCTCACATAGCGGCGCCTAAGTAGTCA
CCATTGCCATTGGAGCTTCCTTGCTTGCATTCTCATTTCAGAGTTTGGGACTACCACTAGAACTC
TGTGCGCCAGATCAATATTCAAGTCTGAAAAAAACACAACTCGAAATGCTATTGCCAATCGAGAC
ACCTGCCTTTTATTCATTCATCGACCACATATCCTCCAAGGCAGAGAAGTAGGACACATGGAATC
TCAGATCCTGGCCTGGCCTATGAACACATTCCCAGAGACTAATAA
Right flanking sequence: Indices 456440 -- 456939
CGCTTGATGGATCGCATGGACTTGAAGCTGTTTTGGCTGGGACTCCTATTGCTAGTGCGGTTGAA
GGCGTTGTTGATGGTAAGGTGATTGGTGATATGAAGACGGATTGCCCGAAACAGAATAAGGGTGA
AAGAATGGCGGATAAGGGTAAATCTATTGATGAGAAAACTGCCTCTGAACAGTATGCGATTGGGA
GCGGTCTATTAACATGGCTGCACAACAATCAATTGATTGAGATCCACAATCCTCTTGTAGAGGTC
GATCTCTCCGAGCATAAAGGTAAAGGATAAAAGTATAAGCCAGTAAACTATGTTAGGTGTCTATT
TGACATAAAGGATCTACCGCTCTTTACAGAACTTCCTATGGTGTCCCCTCCGCGAGATTGGAAGA
ATCGCAGAGCATCAAAATGGGTGAAGGCCTCTGACATGAATCGTCTCACACACAAAGCACGTGAT
CTATCAGGCGGTTACTTAAATTCTGAGGGAGCGGTTTCTAGGAAG
Found at i:470582 original size:23 final size:23
Alignment explanation
Indices: 470554--470599 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
470544 ATCTTTCTAT
470554 TATATATATAAATATGAGGAGTC
1 TATATATATAAATATGAGGAGTC
*
470577 TATATATATAAATATGATGAGTC
1 TATATATATAAATATGAGGAGTC
470600 ATGATTGGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.43, C:0.04, G:0.15, T:0.37
Consensus pattern (23 bp):
TATATATATAAATATGAGGAGTC
Left flanking sequence: Indices 470054 -- 470553
TTCTATAATTCTTCGTCCTTTTTCTTGAGATAACGCGGAAAAGTATCTTTTTGCTATGGCGTATG
ATTTGATACTTGCCAACACGGAATAGAGACTCGCACTTGGGAACTCTTAGGAGTGGTTCTAATGT
TAGTCAGATTTACTTCTTCCTAACGCGACGAGCAGATCAGAAGTATTTCAAGGATTGTAAGGGTG
ATACCTGGAGAGAGTGTAGCAACCCAACATAGATTTTTAGTACTCTATCTTAGTATTAAGAGATG
GAAGAGAAGGAGCAAGGGAGCCTAGGATTAGGTGGTGGAATTGGAAAGGGGATAAGCAAGTTATG
TTTAAAGAGAAAATAATTAATGAGACGGAGTGGAAGTTAGGTGAGGATGCTAACTCAATGTAGAA
TGAGATGGCTCATTGTATCAGTATCACGTCAGTGGCAAAAGAAGTTTTAGGTGAATCGAGAGGAA
AGGAAACAGACTGACCGAACAAAAATAAACCTTTCATCTTTCTAT
Right flanking sequence: Indices 470600 -- 471099
ATGATTGGGTCGACCCAATCATGACTATGGGACCTTTTCTCGAGAAATGCTTTTTTTCTCGTTTA
GTACTTTACTTGTGTAAACTCTCTCTTTTTCTTTTCTTAGAGAAGCGCAGGATTCCCTTTCTTCC
CGGAACACTAATACAATCGCACTTTCTTCCTTGTCCCGCTAACCTATTATTTTTTTTAAGACAGA
ATTTTTAGCTTGAACTATCAATACTAGCCTAATTGATTGCTGGAATGGAACTTGATGTAACTGGC
AGGGACCGCTTATATAGAACGCTTGTAGGGAACCGGAAACCAACCTGCTCTGCTAGGGAAACGAC
CCCGGAGACCAGCCTGATAGACTATATCTATGAACTTCGAATAAGTCCCTACTTTCCTATCCTAA
TAAGGGTACTGGCTCGCGAATGGCCCTACAAAATGACTCTCCTAAAATCAATGTCTGGAAGTCCT
TTTAAGATAGGTTAATATAAGATATGCTATGCTTAACACTTAGGC
Found at i:471663 original size:27 final size:27
Alignment explanation
Indices: 471632--471683 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
471622 GAAATCTTCT
*
471632 GAAGATGTCTCTTCTAGTAAGAATAGA
1 GAAGATGTCTCATCTAGTAAGAATAGA
471659 GAAGATGTCTCATCTAGTAAGAATA
1 GAAGATGTCTCATCTAGTAAGAATA
471684 CACTTATTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (27 bp):
GAAGATGTCTCATCTAGTAAGAATAGA
Left flanking sequence: Indices 471132 -- 471631
TCGCCATAGATTGATTGTGCAGGCAGGTAATACTCATTTTAACTAGAAAGAGGATATTATATTAT
ACATGAGTACTGGTTATAGTCACACTCCCAAACTCCCGAGAAGTCTTTTTTACTTAACTCTAGGA
CTTGCTATAAGGATGGATTGCTTTTACCCTCTATCCCGATCTCGAATTGCGCTTGGCCAGGTTGG
GCACAAACCCAGGTAGCCCCTAAACCCGGGCTCAGTCAAGAGCGGCATCTGAATCCCGCTGCAAT
CCCTCCAGCGCAGGTGGAGAAAAAGGGGCAAAATCTCAGTGGCCGACCTAATATGTTGGCTCCAC
TACCCGATTCCCCTTAATCCTCCAAGCCAATCAATGCCCCATACCCTTATCATGGTCAGTCTCAT
CTTTAGTGACTCCCGTGGTAAGGGGTCGAGGGAAGTGGTGTGGTGGGCCCCCTCACTTTTTTTGG
AAAGAAGACAGAGAAATTCTTTTGCATTTTTGGAAGAAATCTTCT
Right flanking sequence: Indices 471684 -- 472183
CACTTATTTGTGATCCTCCCTCTGTGACTGCTATTCCTATACTATCAGAACAGAAAGTAGACTAT
CCTAAGATTCGGGTTGCGATCCTCAAGGAAATAAGCTTGAATCTAAAAAAGACTATTAGAGTAGA
GTGGGGAAACTTATAGCTACCTGCTCTTTCATTGAAATGAACGAATTACTGCCAGTAATCTGAGA
ATTCATTGGTTCAAGGTGATGCCGCCTTTTGGCTTGGTTCAAGCCAGCTATCCAATTACCGTGAG
AGCTCTTGGACTGTTAGACCAAGTAAAGGTATTTGTCCCTTCCCCTTCTACTTACTTGAGAGTAG
GGAGCAAAACTAGATAAGTCTTAAGCGAAGACTGGGTTTAATGATACCCTCCCCATTCGTAACTG
CTTACAGCGGAACTTCTACTATTCATTCTATCCACTATCTCTCGACAAATGAATCTGAATCAAAG
TAGAGTAGAAGGCCAGACCTTAGGCGAATTTCGGTATCAAGAGAT
Found at i:475312 original size:25 final size:25
Alignment explanation
Indices: 475284--475339 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
475274 TTAGGTGGCA
475284 TTGGGAG-C-AGTAGATCATTTCTTTG
1 TTGGGAGCCAAGTAGATCATTTC--TG
*
475309 TTGGGAGCCAAGTAGCTCATTTCTG
1 TTGGGAGCCAAGTAGATCATTTCTG
475334 TTGGGA
1 TTGGGA
475340 TCTGCCGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 15 0.54
26 1 0.04
27 12 0.43
ACGTcount: A:0.20, C:0.14, G:0.30, T:0.36
Consensus pattern (25 bp):
TTGGGAGCCAAGTAGATCATTTCTG
Left flanking sequence: Indices 474784 -- 475283
CCATAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCACGGGAATACAACCCAAGGAATAGTGCC
GGTGCCAGTAGTCAAATAGCTCAGAGTTAGCTCTGTTCGACTCTCTTTGTTCGTAACATTATACG
TTACTCACTGGGTGCAGCTACAGCTATGGGTCGGTTCGGTAGTGAAAAGAAGATATCGGTCCTGG
CACCTTTGGCACGGGCACGCGTGGAATAGGTGATTCCGTGGTAAACAAATCCTTTGACCGGCAGG
CCGAGGGATAATCACTGGCTAACCCTCTTCCTCATCCTTTAGAGCTGGAAATACCCGGCCTAGTG
ATAGTTAGAAAGAGTTGGCCATCGGGAGAAGAGATGGAAGTTTGCACTTGACGAGATAGAAGTTT
TCTCAACTGAGTTCACTCATTAGCATGGATCCGATCCATTCAATAATCCAATTCAGAATTGCGTT
TTCTATTCAATAATATCGATCGAACAATTTCGTAGTTAGGTGGCA
Right flanking sequence: Indices 475340 -- 475839
TCTGCCGTGATAGAAAATAAAATCCATTGTTCCTTTGACAACAGTGAGTTCCGGCATGATTGCTT
ACACAAGTGGTGGATTGGATTGGATGGCGGAAGAGAGAAGAGACCCGGTCCCGGTATGAAGCAAG
CTAAGGTTCTCATCTCCCGAAAGAATAGAATGAATGGAACTGTTGAATCTCTTCTCTAGCAAGCA
TCGAAGAAAGTGTATTCATTCTCGGGTGTAGATCGGGGAATAGCTCAGGCTCTGGTTTCAGGTCT
TGCATGAGGGAAGGGAAGGTGCCGGGATAAAGGTCGGTTGAAAAGCACGGCTATACACGAGCTCA
AGCTAGTGTGTTGGCCGGTTCGCAAGGATTGAGTTGAGTGAACTGGCTTTCCTATCGAATAGAAG
GAAGTGGTGCACGGCGCTTCGGAATGTGAAATAACGTATCAAATCTCCGGGGAAAAACAGTTGAT
GTGAATGAATGAATTGAAATATGCATGCTGCATGCCACCGAGAAA
Found at i:485053 original size:5 final size:5
Alignment explanation
Indices: 485043--485068 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
485033 CCTCGGCCGC
485043 TACTA TACTA TACTA TACTA TACTA T
1 TACTA TACTA TACTA TACTA TACTA T
485069 GGTAATATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.42
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 484543 -- 485042
AAAAAATGGGTTTTATTTATCCGAAAAGTTTTCACTTACAAGAGCCCACCGCTTTAGAAGTGCTT
TCCTCTCTCTTTCTTTCGTACAAGTAGATCGTTTCTGTTGGGATGAGATCTGTAGTCTAAGAATC
GGTTCATAGGAAAGCACGCCTTGCAGTTGGCATCGGTAGAAGATTTCCGTCTTGTCCCTCGGAGT
GGAGCTAGACTCACTTCCTTTGTTCGTAACATTATACGTTACTCACTGAGGAAGAAGGGAGTAAA
GTATCTACACTCGTATCGGATCTGGAGATCTGCCCCGGGATGGAAAGGTATCGATCGACCAAGAA
CTTGTCGAATTTCTTTGACCTCGGAGCCCGTACAAGCTCTTCTTCCACAACCATATGTGACCTCC
CCGAGTTTCGAACCCCTCGCCCTCTAAATGTGGATCTCCTCCTCCTCGTTGTTGCCGTGGAGAAA
GACCGTATTCACGTCTAGTTGAAATAGATGCAAGTCCTCGGCCGC
Right flanking sequence: Indices 485069 -- 485568
GGTAATATAAATTAGTCTCTCTATCCTTTACCAAAGCATGGTGCGTCTCTCCCCATCCCCAAGTG
TTCCTATAGAAAATCCCTCCCGCCCCCATGGGGGGGATTTCCTATGGGAGTGGGGATCTATCTCT
TTAGCTCACCTCACACTGAATTCCAGGGAAAGATTGGACATCCTCGGATTACTAAGATGAATGAA
CTCTACTCTCGTATCGTCTCTACTCGGATCTATCTGGAGAATGGCATGGCCTGTACAGTTGCGAA
AAAGCCCACATCTGTCCCGAAGGGTCATTATTGACCAGGAATTCCGAATAAAGAGATTATTATTC
CCATGGCGACACTAATTAGTTTAGTCCAATGAAAGAATGCTATTATCCAGGTGACGACACCGCTC
TATTGGCGATACGTTCTTCTTTCGAACCAAACCAGTGAACTACAACCTATGAACTTACCATTCTG
TGGAAATGAAATGAAATACAGCTAACACTTTCTTCTGATCTTCGG
Found at i:485944 original size:18 final size:18
Alignment explanation
Indices: 485923--485975 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
485913 TTACTCATGA
*
485923 ATTATACGTGACTCGTTC
1 ATTATACGTGACTCATTC
**
485941 ATTATACGTTCCTCATTC
1 ATTATACGTGACTCATTC
485959 ATTAGT-CGTGACTCATT
1 ATTA-TACGTGACTCATT
485976 TGTTCCGAAT
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 28 0.97
19 1 0.03
ACGTcount: A:0.23, C:0.23, G:0.13, T:0.42
Consensus pattern (18 bp):
ATTATACGTGACTCATTC
Left flanking sequence: Indices 485423 -- 485922
TGAAAGAATGCTATTATCCAGGTGACGACACCGCTCTATTGGCGATACGTTCTTCTTTCGAACCA
AACCAGTGAACTACAACCTATGAACTTACCATTCTGTGGAAATGAAATGAAATACAGCTAACACT
TTCTTCTGATCTTCGGGCAGTCCAATCTCATCAAGAGTAGACAATCATATCAACTCCGATATTAC
ACACTTAAAATGCTTCTCCCAAGCCCAAGTCAACCCCAACAATTCCAAGAAAGCGTATCTCCTAT
CCGGGACAAGCCTTGCTTTGGGAATATAGAGGAGTTCACACCCAGTCCAGACTTCACTGTATCTT
TCGTTTTAGGCCAGTCCAATGATACGATACGAGTGCCTAAGGCATTCCACGGTTCCTACTGGAAG
TCAAGTACCCCTCGCTAATCCAATGAGGAACTACCGGTTATATTCGTCTTTCTATTCGTCAATAT
GCTCGTAACATTAGTCGTTACTCGCTCGTTAGTAGTTACTCATGA
Right flanking sequence: Indices 485976 -- 486475
TGTTCCGAATATCAAGAAAGCATTCATGGCCTAAGGAGCATATTCTTTTGACAACGGTTTCCCTC
ACCTCCTCTGAACATACACTCTTATCACGGGCTTCAACAGACGGGATATGCTCGAAATCATACTT
GCTTGCACGGATACAGACTTGCACTTGATGGACTAAACTAATAGGTGAGTTCTCTTCTAATCTAA
AGGAAGAGTAACGAATTGGGTATTCTCAAGTATGGAAACTGCTAGGCTAGGCAATTCTAAAGTAC
CTGTCAACGGGCACATACCTCTTGACGGCTTGGGGATTCAAACTTAAGTTCCCCATGGTTTTAAC
TGAATGGCGATTCGTAAGTCCCCTATTCTCAACTATGGAATATGAGATGTTTGCATATCACGTTT
AAAAAACTATGAATTTTACTCAGTAAACTCCCCAGGCACTTTGCTAGCAGATGTTTCAGTACAGC
AAGGAACCTGAGAAGAGACCCGAGGAACCCTGTAGGTAGATAGTT
Found at i:485969 original size:36 final size:36
Alignment explanation
Indices: 485886--485972 Score: 88
Period size: 36 Copynumber: 2.4 Consensus size: 36
485876 ATGCTCGTAA
* *
485886 CATTAGTCGTTACTCGCTCGTTAGTAGTTACTCATG
1 CATTAGTCGTGACTCGCTCATTAGTAGTTACTCATG
* * * *
485922 AATTA-TACGTGACTCGTTCATTA-TACGTTCCTCATT
1 CATTAGT-CGTGACTCGCTCATTAGTA-GTTACTCATG
485958 CATTAGTCGTGACTC
1 CATTAGTCGTGACTC
485973 ATTTGTTCCG
Statistics
Matches: 41, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
35 3 0.07
36 37 0.90
37 1 0.02
ACGTcount: A:0.22, C:0.23, G:0.16, T:0.39
Consensus pattern (36 bp):
CATTAGTCGTGACTCGCTCATTAGTAGTTACTCATG
Left flanking sequence: Indices 485386 -- 485885
TATTATTCCCATGGCGACACTAATTAGTTTAGTCCAATGAAAGAATGCTATTATCCAGGTGACGA
CACCGCTCTATTGGCGATACGTTCTTCTTTCGAACCAAACCAGTGAACTACAACCTATGAACTTA
CCATTCTGTGGAAATGAAATGAAATACAGCTAACACTTTCTTCTGATCTTCGGGCAGTCCAATCT
CATCAAGAGTAGACAATCATATCAACTCCGATATTACACACTTAAAATGCTTCTCCCAAGCCCAA
GTCAACCCCAACAATTCCAAGAAAGCGTATCTCCTATCCGGGACAAGCCTTGCTTTGGGAATATA
GAGGAGTTCACACCCAGTCCAGACTTCACTGTATCTTTCGTTTTAGGCCAGTCCAATGATACGAT
ACGAGTGCCTAAGGCATTCCACGGTTCCTACTGGAAGTCAAGTACCCCTCGCTAATCCAATGAGG
AACTACCGGTTATATTCGTCTTTCTATTCGTCAATATGCTCGTAA
Right flanking sequence: Indices 485973 -- 486472
ATTTGTTCCGAATATCAAGAAAGCATTCATGGCCTAAGGAGCATATTCTTTTGACAACGGTTTCC
CTCACCTCCTCTGAACATACACTCTTATCACGGGCTTCAACAGACGGGATATGCTCGAAATCATA
CTTGCTTGCACGGATACAGACTTGCACTTGATGGACTAAACTAATAGGTGAGTTCTCTTCTAATC
TAAAGGAAGAGTAACGAATTGGGTATTCTCAAGTATGGAAACTGCTAGGCTAGGCAATTCTAAAG
TACCTGTCAACGGGCACATACCTCTTGACGGCTTGGGGATTCAAACTTAAGTTCCCCATGGTTTT
AACTGAATGGCGATTCGTAAGTCCCCTATTCTCAACTATGGAATATGAGATGTTTGCATATCACG
TTTAAAAAACTATGAATTTTACTCAGTAAACTCCCCAGGCACTTTGCTAGCAGATGTTTCAGTAC
AGCAAGGAACCTGAGAAGAGACCCGAGGAACCCTGTAGGTAGATA
Found at i:491694 original size:33 final size:33
Alignment explanation
Indices: 491652--491717 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
491642 CCAGTTCCTT
491652 CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
1 CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
* *
491685 CAGAGATGGAGAAGTAGCTCGGTCAGTGGAAAG
1 CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
491718 TATCCGATTG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.35, C:0.12, G:0.39, T:0.14
Consensus pattern (33 bp):
CAGAGATGGAGAAGTAGCTCGGGCAGTAGAAAG
Left flanking sequence: Indices 491152 -- 491651
ATGAGCGCAATCCTCATCTATGCTTTTCTCTGTGATGCGGGGGGCTACCCATTTAAGGAAAGCTG
GGCTGTAAAAGGGCAATTCAGTTCTTCACAACCGCTTTTAGGAGCAAACGATCCTTGCCTTAGTA
TACAAAAAGAGAGGAATGAATCATCTCGTATTTTCTTGTGGGATAACCTTCATCAGCTTTTATCT
CCAGCTACACAGCCTCTCACTCTTGTCATTACATTGCGGCAGCATTGCAGTTCTGGCACTTGTTC
AGCTCTTAGTGCATTCTCAGATGCCTCCTCATCCTGAGCTAGCCGTCACATTTTCTCGAAATCAT
GGCGACAGGAAGGGCTAAAAGAGACCTCATCTGGTCAAGAAGCAAGGGCAACATTTCAAAATCGA
GTACTAAAATATATAGTATAGCAGTATCTGATCCTTGCTTGGGAGGAATTCCTAAGAAAAGAGAG
TTCTCTCAGCCAGTGAGTTCCCTCTGCCAGACAAGCCAGTTCCTT
Right flanking sequence: Indices 491718 -- 492217
TATCCGATTGATAGTCTCCTACCCTTGGGAAGACTTCCATAAATAGAGATAGATCCCTCCGATCC
CTAAAGTAGAGGCACTCGTTTGAAGGAAGAGAAAGCCTTGGAACTACTCGTACCAAAGCCAGCCA
GTACTTTTCTTGATCGCTTATCCTCGATCTTCCAGATAGAGTTCTGAGTGCTCATTTCTTATAGA
ATCGATTTCTAACCTTAGTTGATAGACAGAGAAAGCCCTGTGCTGTGTGTGCGTATCTTCCTACG
AACTAGAGCGAAGCGGAGTAGCTTCTTTTTCCGCTTAAATCAAAGGATGGAATGTTGGACTATCA
ACCAACTGAGACTGCGCGAACTAGATAGCCGAACAGCTAAAGCAAGCAGTTACCAGACAAAGGCG
AATGAAAGGAAACACAAACCGCAAGGTCAAGATGTTTTCTAGCGGCCGTCTAGCGCATCCGTTTT
CTTGCTTGGATGAGTTCTGGAAGGGATAGAGGGATTAGGGATATT
Found at i:501657 original size:6 final size:6
Alignment explanation
Indices: 501646--501687 Score: 77
Period size: 6 Copynumber: 7.2 Consensus size: 6
501636 TACTGTACTA
501646 TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGG- TAGGGT T
1 TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT TAGGGT T
501688 CCGTTGAGAT
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
5 5 0.14
6 30 0.86
ACGTcount: A:0.17, C:0.00, G:0.50, T:0.33
Consensus pattern (6 bp):
TAGGGT
Left flanking sequence: Indices 501146 -- 501645
CAAGCGCTTCCGATCAGGTGTGGTCAATTTGATAGCTGCCAGTTTGCAAAATTATGGTTGTCCTA
TCGGCGCTAGAAGAAGCGTCCATACGCCGCTTTTAGGTATCTCCGCTTCAGACTGAAGTTTCCCA
CGGCTTAGAATAGAAGACGTTGAAGCCGCACTAGCTATGTGCCAGGACGATGATACAGCAAGATT
AAGGATCTCCGTAAACAGAAGAAACTCAAGTGAAAGAAGCCCACTAATTGAATAGTCAACTTAGA
TGGTTCCACTAGAATGGAGGGCAACTTCGGACACTCCTCTTATTTTACTAACTTAATATTCTCTG
GCTGGTTCTTAGAGTTTTCGTCCTGACATTGTTAAGCATACTGCGATTCACACACCTACCGACTT
ACGACTGCTTACACAATAAAGGTTTTCACTACCTTAGCTTACGGATAGAATGAATGCTTGTACTT
GCCCAAGGTGACTTCGCATTACTCTATACACAGGGTACTGTACTA
Right flanking sequence: Indices 501688 -- 502187
CCGTTGAGATGAGCCTTCCCCACTGTACAAGAGTTATAATATTCTATTAGATTGGGAATTGTACC
CGCTGGTTTTCTTTTAAGAAAAGACACAGAGTCCTACTTGGGATTGGGACTTCCACAGTAGCTCC
TTTACCAAGACTTGATAAAGTAGTTCGCAGTAAAGAAAGAACACGGATACGTTACTAATAATAAT
AAGATTGGAGTTAAGATGCGGATCAATTTGATATGCTATTTGTTATTAAACACTGGTGTAGTACG
ACTACATACATAGCCTTCTTATCCAGTACCAAGGGTGAAATAAGTATTCAAAGTACCAGCAACAC
TCGAGAAGAGAGATTCTGTCGAAAGAAGAAGTGCGCCAACGCTGGAGACCTACAATATACCATAT
CCGAGGGGCTACCCAACAAGGAGTAGCTACCCAGTGCGATAGCTTGCTTTTACTAATTAATAAAG
GACCAACTTCTATACTCTCCGTGAGAGACATCGGAAGAATAAGGG
Found at i:506989 original size:15 final size:15
Alignment explanation
Indices: 506969--506998 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
506959 CGAAAACGCG
506969 TATGTTAAGTAAAGT
1 TATGTTAAGTAAAGT
506984 TATGTTAAGTAAAGT
1 TATGTTAAGTAAAGT
506999 AAAGTAAGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (15 bp):
TATGTTAAGTAAAGT
Left flanking sequence: Indices 506469 -- 506968
GTTGGTAAGTCACTAAATCCCTATCTCCCGGTGGTCGAGTACCCCCGACGCGTCGAATGGGTTGT
TTAGTCTGACTTCTTGTGCTGGCCCGACATCATTCTGTCTCCCGCATTCTCTCCTTTCATCGGTT
TGTTTTTTTTACTTCGCTTCGCGATTAGAGTTGTACGCATCATGCATGGGAATCCTTCCGTCCTT
GATGTTAACGCTCTCGTGCGTAGGTCCCGGGTCAAAGGCATCTCGAAGGAAGCTGCTCCGCATAT
GCGATCACCTCCATGTACCTACAGATGAGGGCTCCAACGCCTACTGTACAATCATGTGGGAAGTG
CATCCTGCACACCAGAAAGTAAGTGGCGTACGCCACACCCCCTCCCCCTGTACCTACACCCATTG
AAACGTTTATTGTCTGACAATCTCCGACGCGACGCGCAACGCCCCATGCAAATCCCTACGTCGGT
CGATCGATGCGCACAGAAGGAGAGCTTGTCCATAACGAAAACGCG
Right flanking sequence: Indices 506999 -- 507498
AAAGTAAGGACAGCAAGCCAGTAATGAGAATAAGCTCTTCATCTTAGTTTCCGCTTTCAGACAAG
TACAGCGTCCACTTTTCTCATATTTGCAAATTGCAGATCTTAATCTTAATAGGATGTTGGCTAAA
ATAAGGGAGGGATCGGATCCAAATACGCAGTGCAAGATGAATGGCCGAAAGAAAGATTAGAAAGT
ATGCCCTCGATTGGGCTGTGACCGACACACTCACATTGAGTCGCCGATACAGGTAGTGGTCAGTC
TGCGCAAAGCCATAATACCAGATATCGGAAAGCGAAGCGTGGTGCTAACATGACTAAAAAAACGA
TTCGGAAATCTGGAACGAAGAGAAGTTAGTAAATAGGCCTTTTGGGAAGCCCTTGATCGAGTAGT
GAAAGCATTTGATCCATCAGATCAGTGCTTGATCTTCTACTTATACTTAATAGGTTCAAGACCTA
AATAAAGGAATGAAAACAGCTGCAAGATCCGCTTACTTCTTTCTC
Found at i:525352 original size:5 final size:5
Alignment explanation
Indices: 525342--525376 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
525332 AGACTAATAA
*
525342 ATAGT ATAGT ATAGT ATA-T ATAGT ATAGT ACAGT A
1 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT A
525377 CGCTTGATGG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.43, C:0.03, G:0.17, T:0.37
Consensus pattern (5 bp):
ATAGT
Left flanking sequence: Indices 524842 -- 525341
CGATGGATAAATCCGCTTTTCAAAAAGAAAAACCTCGATCTTCAAGGTGCTGGAGGGAAGCATAC
CTACTACCAGCTTAGTTCAGAGTTGCCTCAGCGCGCTCGAGTAATAACTGGGAAAATCAAGGCAG
TCTTGAATTAATTAGAAGAGCTTTCTCATCAAAGATAAAATAAACTATATATGAGAAGAGAAGGC
TGTGCTTATTTGATTCCCTCCTATTCTTTGATACCGCTTCTCACATAGCGGCGCCTAAGTAGTCA
CCATTGCCATTGGAGCTTCCTTGCTTGCATTCTCATTTCAGAGTTTGGGACTACCACTAGAACTC
TGTGCGCCAGATCAATATTCAAGTCTGAAAAAAACACAACTCGAAATGCTATTGCCAATCGAGAC
ACCTGCCTTTTATTCATTCATCGACCACATATCCTCCAAGGCAGAGAAGTAGGACACATGGAATC
TCAGATCCTGGCCTGGCCTATGAACACATTCCCAGAGACTAATAA
Right flanking sequence: Indices 525377 -- 525876
CGCTTGATGGATCGCATGGACTTGAAGCTGTTTTGGCTGGGACTCCTATTGCTAGTGCGGTTGAA
GGCGTTGTTGATGGTAAGGTGATTGGTGATATGAAGACGGATTGCCCGAAACAGAATAAGGGTGA
AAGAATGGCGGATAAGGGTAAATCTATTGATGAGAAAACTGCCTCTGAACAGTATGCGATTGGGA
GCGGTCTATTAACATGGCTGCACAACAATCAATTGATTGAGATCCACAATCCTCTTGTAGAGGTC
GATCTCTCCGAGCATAAAGGTAAAGGATAAAAGTATAAGCCAGTAAACTATGTTAGGTGTCTATT
TGACATAAAGGATCTACCGCTCTTTACAGAACTTCCTATGGTGTCCCCTCCGCGAGATTGGAAGA
ATCGCAGAGCATCAAAATGGGTGAAGGCCTCTGACATGAATCGTCTCACACACAAAGCACGTGAT
CTATCAGGCGGTTACTTAAATTCTGAGGGAGCGGTTTCTAGGAAG
Found at i:540943 original size:6 final size:6
Alignment explanation
Indices: 540925--540969 Score: 81
Period size: 6 Copynumber: 7.3 Consensus size: 6
540915 GAAAATGCGT
540925 ATAGTA TATAGTA ATAGTA ATAGTA ATAGTA ATAGTA ATAGTA AT
1 ATAGTA -ATAGTA ATAGTA ATAGTA ATAGTA ATAGTA ATAGTA AT
540970 CTCATTGGCC
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
6 32 0.84
7 6 0.16
ACGTcount: A:0.49, C:0.00, G:0.16, T:0.36
Consensus pattern (6 bp):
ATAGTA
Left flanking sequence: Indices 540425 -- 540924
TGAGTAAAGGTCCGCTCAAGGCCATGGAAAGGCAGATAGTACTTGATACAGGACGAGCCCAGTCT
CTATCTAGTACGATATTCTGGTATGTTTCACTGAATTGGCATTTCTAGATACCAAACAAGTAAAA
AACAGCAAGTTAGTTAGCTCAGTTGGCATAGGCGAAAAAAAGAAAAGGAATCAACGATAAATCGG
GGAAAGAGCCGCAAGCGCGATATCATCTCTATATAGGAAAAATGGATTTTTCTTATTTTATAAAG
TTATGGGACCCTGGCTTTAAAATCTTTCTTTTTTCTCGGCTCGAAAGAGAAAAATCAAAGTCAGG
TAGCCGACGAAAACCGAAATAGCACAGATACAAAGTAAAGAAAGTATACACGCGATAATAGATAG
ATATATATTATATATAATGTTAGAAGGAGCTAAATCAATAGGTGCCGGAGCTGAACTCGTATTCA
GAGATGGAGGAAATCAAGTCTCATGTTGCTCCTCAGAAAATGCGT
Right flanking sequence: Indices 540970 -- 541469
CTCATTGGCCCACTAGATAAGGATGGGACAAACGCTCTAGTGTATGCGAAACGAGCATTGCGTTT
TGTCCGAGAAGTTCGTGAAAGAGTGCTCGTTACATCAAAAGAGATGGCGATGATCTGTCAAATCG
ACATTGTGTCGGTGTTCAGTCTCCCGCTCCTGTTCTCAACTATACTATGGCTTTCGTTACTATAC
TATGGCTTTCGTTGGGTAGAGCACGGGAGAATAAAGTCTATAGTGTATGCGTTACTGTACTGGGA
AGCTAGCATTTTTGCTTGTCATGGAATCAAGTCTATTTGTTCGAATGTTCTTTTTTTCGTTTCGT
TGGAAAAACCAACGCCGACGTCAAGAATGGATCAGTCTAGTCTCCTTTCTCTTTTGGGAGCAGAG
CTGAAAAAGATGGAATTGTCAAGTACGATGATATTTTTATTAACGGATAGAAAAATGCTATTATC
AAGTAGTAAACCCATTATGATTGCAACTCGTGGGATGCCTGGAAT
Found at i:541163 original size:20 final size:20
Alignment explanation
Indices: 541138--541177 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
541128 CCTGTTCTCA
541138 ACTATACTATGGCTTTCGTT
1 ACTATACTATGGCTTTCGTT
541158 ACTATACTATGGCTTTCGTT
1 ACTATACTATGGCTTTCGTT
541178 GGGTAGAGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.20, C:0.20, G:0.15, T:0.45
Consensus pattern (20 bp):
ACTATACTATGGCTTTCGTT
Left flanking sequence: Indices 540638 -- 541137
GATATCATCTCTATATAGGAAAAATGGATTTTTCTTATTTTATAAAGTTATGGGACCCTGGCTTT
AAAATCTTTCTTTTTTCTCGGCTCGAAAGAGAAAAATCAAAGTCAGGTAGCCGACGAAAACCGAA
ATAGCACAGATACAAAGTAAAGAAAGTATACACGCGATAATAGATAGATATATATTATATATAAT
GTTAGAAGGAGCTAAATCAATAGGTGCCGGAGCTGAACTCGTATTCAGAGATGGAGGAAATCAAG
TCTCATGTTGCTCCTCAGAAAATGCGTATAGTATATAGTAATAGTAATAGTAATAGTAATAGTAA
TAGTAATCTCATTGGCCCACTAGATAAGGATGGGACAAACGCTCTAGTGTATGCGAAACGAGCAT
TGCGTTTTGTCCGAGAAGTTCGTGAAAGAGTGCTCGTTACATCAAAAGAGATGGCGATGATCTGT
CAAATCGACATTGTGTCGGTGTTCAGTCTCCCGCTCCTGTTCTCA
Right flanking sequence: Indices 541178 -- 541677
GGGTAGAGCACGGGAGAATAAAGTCTATAGTGTATGCGTTACTGTACTGGGAAGCTAGCATTTTT
GCTTGTCATGGAATCAAGTCTATTTGTTCGAATGTTCTTTTTTTCGTTTCGTTGGAAAAACCAAC
GCCGACGTCAAGAATGGATCAGTCTAGTCTCCTTTCTCTTTTGGGAGCAGAGCTGAAAAAGATGG
AATTGTCAAGTACGATGATATTTTTATTAACGGATAGAAAAATGCTATTATCAAGTAGTAAACCC
ATTATGATTGCAACTCGTGGGATGCCTGGAATCCCACTAAATCGAGAATCGGAATCGGTGGAGGA
TGTGCATAGGGTACTCCGAGCCCTCCCCTTATTTAGAGAAATGGAAGGTATCTTGCGTGAGAGGA
ACCTGAATCTCCCGTCAGTACAGGAAATAAGCGCTTTCCGTGTGAATCTATTCTCTGGTATCCGG
CGTGAGAGTGCGATTGCGGACTACGACGCTTTTTGGCGCTCCTTA
Done.