123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_007982
Parameters: 2 7 7 80 10 50 500
Length:  569630

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9765--9824	21	2.9	21	84	0	75	36	3	41	18	1.67
11145--11182	20	1.9	20	100	0	76	13	26	18	42	1.87
18233--18308	36	2.1	36	97	0	143	19	40	7	31	1.80
18864--18936	34	2.1	35	97	2	139	10	12	31	45	1.76
21317--21382	7	9.1	7	95	5	114	40	0	16	42	1.48
26676--26706	5	6.2	5	100	0	62	38	19	0	41	1.51
30192--30249	29	2.0	29	96	0	107	22	17	29	31	1.96
44569--44607	20	2.0	20	94	0	69	43	5	20	30	1.73
60474--60516	22	2.0	22	90	0	68	25	16	30	27	1.97
68602--68649	23	2.1	23	92	0	78	35	22	20	20	1.96
86785--86810	5	5.2	5	100	0	52	42	0	19	38	1.51
128413--128451	20	2.0	20	94	0	69	30	20	5	43	1.73
145450--145503	21	2.6	21	75	0	63	37	22	27	12	1.91
169222--169269	23	2.1	23	92	0	78	35	22	20	20	1.96
184301--184352	23	2.3	22	83	12	61	42	7	25	25	1.81
188773--188797	5	5.0	5	100	0	50	40	0	20	40	1.52
204120--204145	5	5.2	5	100	0	52	19	0	19	61	1.35
221831--221874	22	2.0	22	100	0	88	31	27	4	36	1.77
222959--222992	15	2.3	15	89	0	50	44	11	11	32	1.77
223537--223610	17	3.9	17	73	21	67	37	25	16	20	1.93
223539--223620	41	2.0	41	95	4	148	34	26	14	24	1.94
233476--233513	18	2.1	18	90	0	58	26	21	31	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243577--243604	11	2.5	11	100	0	56	71	0	21	7	1.09
265182--265219	18	2.1	18	90	0	58	52	7	23	15	1.69
284702--284736	18	1.9	18	94	0	61	14	25	20	40	1.90
285759--285785	6	4.5	6	100	0	54	33	14	0	51	1.43
285784--285811	6	4.7	6	100	0	56	46	0	35	17	1.49
298781--298822	21	2.0	21	100	0	84	23	23	14	38	1.92
306854--306890	18	2.1	18	94	0	65	18	13	21	45	1.84
307813--307850	19	2.0	19	85	10	51	44	21	31	2	1.66
330695--330758	21	3.1	21	93	4	112	51	7	4	35	1.52
330699--330759	20	3.0	20	95	2	104	50	6	4	37	1.50
330752--330784	14	2.4	14	94	0	57	54	3	15	27	1.55
367876--367910	18	1.9	18	100	0	70	28	25	0	45	1.54
372875--372905	5	6.2	5	100	0	62	58	0	22	19	1.40
381978--382022	5	9.0	5	97	0	63	33	0	20	46	1.51
384202--384245	5	9.0	5	97	2	81	38	0	40	20	1.53
388358--388394	5	7.4	5	100	0	74	40	0	18	40	1.51
397496--397532	6	6.3	6	93	6	67	48	32	0	18	1.49
413183--413223	21	2.0	21	90	0	64	34	26	14	24	1.94
413611--413709	37	2.7	37	93	3	164	24	14	14	47	1.80
433213--433278	7	9.1	7	95	5	114	40	0	16	42	1.48
434258--434286	12	2.4	12	100	0	58	24	17	6	51	1.69
434321--434364	6	7.3	6	100	0	88	34	15	0	50	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434692--434721	6	5.0	6	100	0	60	50	0	33	16	1.46
445930--445994	34	1.9	34	96	0	121	32	16	35	15	1.91
456405--456439	5	7.2	5	90	6	54	42	2	17	37	1.64
470554--470599	23	2.0	23	95	0	83	43	4	15	36	1.66
471632--471683	27	1.9	27	96	0	95	38	11	21	28	1.88
475284--475339	25	2.2	25	84	12	71	19	14	30	35	1.91
485043--485068	5	5.2	5	100	0	52	38	19	0	42	1.51
485923--485975	18	2.9	18	80	5	63	22	22	13	41	1.88
485886--485972	36	2.4	36	75	11	88	21	22	16	39	1.92
491652--491717	33	2.0	33	93	0	114	34	12	39	13	1.82
501646--501687	6	7.2	6	94	5	77	16	0	50	33	1.46
506969--506998	15	2.0	15	100	0	60	40	0	20	40	1.52
525342--525376	5	7.2	5	90	6	54	42	2	17	37	1.64
540925--540969	6	7.3	6	97	2	81	48	0	15	35	1.45
541138--541177	20	2.0	20	100	0	80	20	20	15	45	1.86

Tables:   1

The End!