Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_008333
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 539368
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:19209 original size:23 final size:23
Alignment explanation
Indices: 19175--19222 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
19165 GAGCATACTA
*
19175 TAGACTCCGCGAATACAAGTCAG
1 TAGACTCAGCGAATACAAGTCAG
*
19198 TAGACTCAGCGATTACAAGTCAG
1 TAGACTCAGCGAATACAAGTCAG
19221 TA
1 TA
19223 TTTGTCTCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.35, C:0.23, G:0.21, T:0.21
Consensus pattern (23 bp):
TAGACTCAGCGAATACAAGTCAG
Left flanking sequence: Indices 18675 -- 19174
ACTATCCTACGCACGATTTGGAGTTGTCTGCTCTAATATTCGCACTGAAGATCTGTTTACATTAG
GGTGCCGACTTTTCAAAGATAATCACCAGACAATAAAAGAAAAATGCATCAGGAATGAAATCTGA
CACAGCGTGGCTGGAACTAATTAAACATTACGATCTCGTCAAGGATTATGCAGCTAAGGAGTGGT
GGCTGAGGCAGTGGAAAGAGAAAAGCCAATATGGCGTGGTGACGAGTGAGGTGCAACTCTTGAAA
TAGATGCAGCAGATTTGTGCCTTGGTAAGAAGAATTAGTGGACAAACTGACAACGAGAGAGGGGG
GACCGAGCCAACGAGGAAGAGCACTGTTCTTATGCTAAAATCCATTATGGTACATACACCGGGGC
AGGATACCCGATAGGCATAGGCAAGGTGGAAGAGATCAAATAAGACATTGAGAAAAGGATGCAAA
AAAGAAAAGAACGAAGTTGCAAGAAAGAGAGAAAAGAGCATACTA
Right flanking sequence: Indices 19223 -- 19722
TTTGTCTCACCGTACGTCTTCTTCACCCCGACTTGCTTCTTTCTGCTCTTTTCATTCAAATAAGC
TCTTCCCACAACCTTTCATTGCCATTTGTCTTCGAATCCTCTTCGGCAACGCTGGGCCGGTCGAA
GGGCGCTTCCAGCTCGTTAAAGCAACCACAGGAGAAGAACCACAAGGAACGGCACTACAGGTATG
GTACGAACCATGCTCTAAGATTGATAAACTACATCATCCAAGACTTCAATACGAATCCATAGGTG
AGGAGAGCAAGCCAATGAAGTCAGCCCATTAGCTAGATTGGCAATAAGCATTACAGGAGTCAGTC
TGTCCAGTATGTAAGCCATGAGTCTACTACTTAAGCCTATGCAGTCTGTCCAGTATGCCAAGTAT
GCCTCATGCTGTAGTATGTCCGATATGTCATGTAAGCCATGGAGTGTATGGACTAAGTAAAAGCA
ATGGGCTAGGATTGGGACTGCCTACCTTCTACAACCATTCCTACA
Found at i:34118 original size:23 final size:22
Alignment explanation
Indices: 34069--34120 Score: 61
Period size: 23 Copynumber: 2.3 Consensus size: 22
34059 ACTTTAGCTT
*
34069 TAGAATGAGGAACGTATCGTATA
1 TAGAATGAGGAACGTA-CGAATA
34092 TAGAATGAGGAACGTA-GAATTA
1 TAGAATGAGGAACGTACGAA-TA
34114 CTAGAAT
1 -TAGAAT
34121 AGAAAGGCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
21 2 0.08
22 2 0.08
23 22 0.85
ACGTcount: A:0.42, C:0.08, G:0.25, T:0.25
Consensus pattern (22 bp):
TAGAATGAGGAACGTACGAATA
Left flanking sequence: Indices 33569 -- 34068
ATGGATGGCTATATTCCTCCAAGAGGGAGGGGAAGAGCCCGAGTCAAAGTTCTTTGTTGACCAAT
CAAAGAGAATGAAAGAAATATAGAAAGAATGGATTAGTGTCAACTCCATGAATCGGTACAGGTAG
AAGTAGAGGGGGCATGCCAAAAAGAATTTGAGAAGCCTCGTTTCTGAGCTTTTACAGCATCTTTT
GATTCAGAAGCATCTCCCACGAAATCACATAACATAAGTGATCCTGCGGAACCGGCTTTCCTACA
CTCACTGATCCATTCAAAGGATTTTATTTTCTCACGACTGATCAGCTCCGATATTAATAAGCACT
GCCTTCTAGCCAGTCTAGTCCCGGAGACATTATACTCTGGGTCTGGCATCGCCTCGCAAGATCAT
CTAGTCTAGATTTACTCGGGTGTGCCCGATTTCCATGATCCCTATTTCATAGCTTGGCTTGGGTT
GAAGGTGAAGTCTTTATATTCTAGTTAGAGTCACTACTTTAGCTT
Right flanking sequence: Indices 34121 -- 34620
AGAAAGGCGAATAGAAAGACTAGTTACTCGCTCTAAAGTATTATACGTGAACTATTCTCACAGAG
GAATGAAGGGAGCTGGAACCAGGCTGCCCAGGAAGGATTTCTGAGCTCTACTCTAGTATTGACTG
GCTTTCAAGGAATGGAGCTGCCTATATAAATAGAAAAAGCTTTGCCCGCGAGAATTTCATTTCTT
TAAGTAAGCTGCTAGGTCTGTCTTATTTGATGAAAAGCAAGACAATCCACCATGGATCGGAGGGG
GCTATATACGAAACTGAGGAGCTCTTACCTCTATTTATGATAATAGAATAGCTTTGGGTGGCTTC
ACTTATCTGATAGCCAATGAGTCACTATTCCAATCACCGCCCCTCGCTCGTGCCCATCCATTAAC
GGAACGGACTTACCGTTACTAAGCTCGTAAAGAGGAGGGCTATCTTTCTTTGAGGTTGCGTATGA
TTCTTAATTTGAAATGAATGAATCTGTTCATAAGATTTGGATCGA
Found at i:66726 original size:20 final size:20
Alignment explanation
Indices: 66698--66736 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
66688 TCTGGGGATA
66698 AAGTAAAGTATCGTAAAGTT
1 AAGTAAAGTATCGTAAAGTT
*
66718 AAGTTAAGTATCGTAAAGT
1 AAGTAAAGTATCGTAAAGT
66737 AGTTGACAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.44, C:0.05, G:0.21, T:0.31
Consensus pattern (20 bp):
AAGTAAAGTATCGTAAAGTT
Left flanking sequence: Indices 66198 -- 66697
CTCCGGGGAAAAACCCCGGGAAGAGGAAGAAGGAGATAGAGCAAAGGGTCTCCTCTTTCTGTCCG
CTCTTCCCGGCATGTAGAGATCCGATTGGGCTTATAGTTTAATTGGTTGAAACGTACCGCTCATA
ACGGTGATATTGTAGGTTCGAGCCCTACTAAGCCCATCTGACCTGCTTAATCAATGACTCCGGTA
GTCACCTGAACCACTCTCTCGGATAGCCCACAGCCTCTCTTCTGGATGCGAAAGAAGATTCGATC
AACGTACAAGGTTTGCCTTCTTGTGAGAAGGAGGGTTCTTAATTGTGTTCTCAGTGCAAAAGGAG
TCTTTGAGAAGGTTCAGTGAGTCTGAAGAGAGAGAAGATCAGTAGAGCAGTTCGGGGCTTTGGGA
TTTGCCTGATCGACCCCTACCAGTGTATTAAATGAAGATTGACATTCGTATGTACAATTTACCGG
TTCTTCCTCCCGAATTGAGACCCATTGTTTATAGGTCTGGGGATA
Right flanking sequence: Indices 66737 -- 67236
AGTTGACAAAGCAAGTAGGAATAGGTCATGTCACAGATAGGCAAGTATAGAAGCAGGAGAAGCTG
ATAGACATTTGTGAATAGCAAGGCCAAGCTGTATACATATAAGCATTTTAAGGAGTTGTTTGTTG
GCATATGGTTACGGGATGCTTATTGTTGAGAAACATAAAAAAGGTAGGCATATTGTTCAGTTCAC
GTTTAGGTCAGTATAGAAGTAAAGCACGAGATAGGTGTTTACAAGCTAGCTAGGGTTTCTAATAG
GTATAAAAGGGTAAGCTAATAACCAAGTAGTAGGGATAGGTCAACGCAAGTCACGGGTAGCCAAG
AGAGACGTATTTAAGACTTTGAGTTCCAGGATAGGCAGTCATGTCAAGTAAAGTATAGCTTAGAT
AGTTCCTATAGAAGTATAGCTAGCCAAGTGACTAGGTTTAGCGGAGATAGAAATAGCGGGCGAGA
TATCAGGAGACAGGACTAGGACTTTGAACGAAGCAGGAATCTTGT
Found at i:107341 original size:21 final size:21
Alignment explanation
Indices: 107315--107359 Score: 81
Period size: 21 Copynumber: 2.1 Consensus size: 21
107305 GAGGGTTAAT
107315 ATGATGAATACAGATAGAATG
1 ATGATGAATACAGATAGAATG
*
107336 ATGATGAATACTGATAGAATG
1 ATGATGAATACAGATAGAATG
107357 ATG
1 ATG
107360 TGCTTTCTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.44, C:0.04, G:0.24, T:0.27
Consensus pattern (21 bp):
ATGATGAATACAGATAGAATG
Left flanking sequence: Indices 106815 -- 107314
CCCATGAGTAATGAGGTAATAAGTTCACACGGAACTATGTGGAAAGCCCTAAACCATGCGGCGGA
ATCATTAATTAATGGTTTCATGAGTGAATTAGCCAACCTCGAAGCCCACAGCGCAGGAATCATTG
GCTATGATGCCTCTGATTGTGTGTTACATATAATCATGTCCCAAACCCCTGACAGCATAAGCTTC
ATTTATGGAAATCTCTTTACTATTGTTAGATTAGGCGGTACCGCTAGAAAACTATGGATTAATTA
CCATATTTGGGATGGTCTGTCCCTTTTTAGGGGGGATGTTTCGGCTGTACCAGACTCCATACAGG
ATTTGATAAAGGAACTTTATGTAAAGGAAAAAATAGAAGGTCATCATATCTTTAAGTACCGTCAG
GCTATCAGGTATGAGTTTGGCATCTTAGAGTCGTCTGACATCCTTGAACGCGTGGGCCCGGCTGC
TCTAGGCCTAAAGGGAATAGTTCCTAATCTGGTAGGAGGGTTAAT
Right flanking sequence: Indices 107360 -- 107859
TGCTTTCTTATTAGAACAATACCGAAATATAGGAAATTTTCAACTGGTAAAAAACAACCGTTATC
GACCTTATGTTATGATGCAAATAAGCTTATGCTTTTATCAACAATTGAGTCTATCTATAACCATG
AATGGAGGGTTAGAGGAGTGCTACCTTTATAGCTACCAATCTTCTTCCTCCTGGTACTACTACGA
TAGTCCAATGAATAAGGAGAAGGTCGTTATTTGTCAGTATTGAGCCTGATAGCATAATTCAGTAC
CCGTGATGATGGGCTCTAGCAAGGAGGAAGGGAAGCATCCTCTTCAATAGCTTGAAATCAACTAC
AGAGTGTTGAGTATCAAATTACGTATTCTATTTATTCATAAATCGCACAGGGGAAGCTCCTGAAT
TCATTAGTTGAGTATGTGATCTCATAGTAAGAAGTGATCACAAACGGTGATGGATGCCGAGAGTA
TGTTGATGGGGTGAATCTGTAGAACAATACTACAGTAGAGATTGG
Found at i:109071 original size:21 final size:21
Alignment explanation
Indices: 109036--109095 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 21
109026 AGGGGGTGGA
* *
109036 TAGTAGCTGTAAAGAAGAAGG
1 TAGTGGCTGTGAAGAAGAAGG
*
109057 TGGTGGCTGTGAAGAAGAAGG
1 TAGTGGCTGTGAAGAAGAAGG
**
109078 TAGTGGGAGTGAAGAAGA
1 TAGTGGCTGTGAAGAAGA
109096 TAGTGACGAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.37, C:0.03, G:0.42, T:0.18
Consensus pattern (21 bp):
TAGTGGCTGTGAAGAAGAAGG
Left flanking sequence: Indices 108536 -- 109035
CACCTACAAAGGGCATTAGAAAAGTATGAAAACTTCGGTGTTTCTGCAAAACATAAAGTATTGCA
ATGTTTAGTACACGTGGTGACATCACAATCAGACAACAGTGTTAGGTATGTCTATGGGAACATCT
TTGCACTAGTTAGATTAGGTACTTATGTAACAGTGTGGTACTGTTATACTGAGAGCGCACCAGAT
TTCATATCTGTGGACCCGCACTATCTTGATATAGAATTGATTATTGATTTATTCAAAGTTCGTAA
ATTATTCGTATGGATTCCATACGAGGAAGTGATTAGTACATCAATCTTAGAAGCTTATGATGCGG
TTGTGGAAAGGACGGCTTTAACGGATTGCTTGGATAGAGAAGAGGAATTGTCGGATAAATTCGAA
TTCTGGGGGAAATGCTCTGATGGTGATCATACCATAGATTCTGTAGAGGAGAATGCCACTATAGA
ATATGCTAGCAGTAAAGAAGGTAGTGCCTGTAAAGAGGGGGTGGA
Right flanking sequence: Indices 109096 -- 109595
TAGTGACGATAGTGACAATCCTAGATACCTGGCATTCGGTGTGGTTGTCCTTGTAGGTGTGTTAT
TATACGTCTGGTATTGTTCTAGGTAATTCTATATTTATTGTGAAAACCAGAAATAAGAGTTTCAG
TTCATACTTGGCCATCGCCCGGTAAAGGGATAACCTTTTTGTCTTGAGTGGAAATAGAATTCCTT
TTTGCAAAGCTAGCTCTTATGGCGCATTGGTGCACAATCGTGCACTGCTTCTTCCTCATAAAAGA
ACCCGGCTTTCCTTCGAAAATTCCTATATGTTTAGGAGAAAAACCTTATCCATTAAGAGATGGAA
CTTCAAGAGCTGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCGTGCATTACCTCCATACCA
AGATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGA
TTGGTTGAAATTGAAACCATTTAGGTTGAATGCCATAGTACTAAT
Found at i:110449 original size:20 final size:20
Alignment explanation
Indices: 110424--110461 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
110414 GTCTCCCCCT
110424 CTTAGAGGCTTTCCTCTTAG
1 CTTAGAGGCTTTCCTCTTAG
110444 CTTAGAGGCTTTCCTCTT
1 CTTAGAGGCTTTCCTCTT
110462 TTTAGCAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.13, C:0.26, G:0.18, T:0.42
Consensus pattern (20 bp):
CTTAGAGGCTTTCCTCTTAG
Left flanking sequence: Indices 109924 -- 110423
AAAAGATAATCAAAGGCATTCCCTGGTTTACTAACCCTTATAGAGTACATGAGCCAAAGCACAAT
CCATCCCTTCCAATCAGACAAGAAGGAATCCGATGTATTGATCTTCGTCTGTACTGTGCTGTACA
AGACAATTACCAAAGATCACAACTAATGATCTGTTTGACACAAGACATGACATGACCTGGCGGAT
CATATACAGAAATGGGTTTAGCCTTCTCCTTGGCTTGACTCTTGTAAGTGAAAGGTTGGATCATA
TCTGGTTTCCGGGAAGGTGCCTCGCTATTCCTCTGTTTTGTAGCTGACTAGTAAAGGTGGCCTAG
CCTGCACAGGTTCGTTGGTTTCAGCTTGTGCTTTACTTGAGGGCTCTGTTTGGTATTAGCTTGAG
AAGCGGTTGTAATTGTTCATTCATATCTTGTTTCAGCAATGGTCTATACTATAGAGCTCGGGAAT
GCATTCCATGCCTATTCTTCAATATGAGAAGGGGTGTCTCCCCCT
Right flanking sequence: Indices 110462 -- 110961
TTTAGCAGCATCAGCTTGAATCTCCCGATTAGCAATCATGATTTCCGAATTAGAAAATTCATTTC
GGAGATCTTCATTCTCCTCTAACAAATTCATAATTATCCGATAGGAGGTCGGATTGATACTTTTC
ACATCAAAGTCACCTATATGGCAGGGCTTAGTATCAACCCATACTCCATTTTTGTCGAACACATA
CTCCCTCTTTTTACTTTCTAACCCCATGGTATACTTACACATTTTCTCTTGAACCAACAGTTCAC
GGAAGTTTCTACTGAACTTTCGGACATATGAAATCACTTTTTTAGCCCTAGGGTCAGCTAGCTGG
TTGATGAACCATTCTTCATCAGCCTCATCTTTACCCGCTCCTTTAAACTTTATTATGGGTTGGTC
CACACTAGATGCCTTAAGCATATAGGACTTAGGTGCTAAAAAGATGCCATATTCGACAAAGTGCT
CATGCTTAAACTTACCCAAAGCGGTAGGTGATACCTCTTCTTCAG
Found at i:132228 original size:5 final size:5
Alignment explanation
Indices: 132218--132246 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
132208 GGAAAGCGTA
132218 ACTAT ACTAT ACTAT ACTAT ACTAT -CTAT
1 ACTAT ACTAT ACTAT ACTAT ACTAT ACTAT
132247 TTACGATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.17
5 20 0.83
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (5 bp):
ACTAT
Left flanking sequence: Indices 131718 -- 132217
GAAGACTTCCAACATAGAGTTCCTTCCCTTCAATGGAACAGCAATCGATGAATGGAGTTTGAGGA
TTGTCATAGAATAGAACAGAACTCGCCTCCACCTAAGAACTTCACTTTGAAATCCACAGCACGAA
CACGGCTCTTATAGATTAGGTTTCCTGGGAGTTCCCTTTCTTCGAGTACTATCCATACAATATTA
GTGACCCTGCTCCTTTCCTTGAATTGTGATCTATTGCCTATGGTGGCTTCGGCTTAGGCTGTTGA
TTAATGCCTTGGTGTGTTTTCTTCTTGTTTCTTCTCTTCTTCTTGTGATCTTGATTGCGCCTGTT
TGCACTTAGCTTGATGTGATTTTATTTAGGCTCCTCTTTGACGAGAATCCGAAAACTTTCCTTGA
AAGGGGAAGTCCGCCACTCCACTAAGACCGCTTGCTTCTCATGCGCTGATGAAGTTCGTACCACT
TCTTGCTGTCGAAGAGCTAGGAATCCAGTCACTCAGGAAAGCGTA
Right flanking sequence: Indices 132247 -- 132746
TTACGATAATTTGATTGCTGACAACATCACGCTTCTCTTTCTCCAGCGTCATGCCTTGTGACCTC
TAGTTTCAACCTCCTAGCATTGGCTTCACTTGATTAGAACCATAAGCATTTGCATTCGCGACCGT
CCTCGTCCCAGGTTTTGTTCTTCTTTGCTTTGGTGAGGTATACCTCTATCAAATGTGCTTAGCCT
TTTCGCTAGTGCTATTTCATGCCATTGGTTTGAACTGGATAGAGGGGAAGGGCCTTACCTTATCT
ACAACTATCTAATTGCAATTCCGGATAGCATTATTCTTAGCCGAGGAAGGAACCGTTGATGGCGG
AGTTATTTGCACGGATTTTCCAGCTATATGAAGATGAGGCTAAAAGACGCGGATAGAAGTCCGAA
AATTAGTTAAAAAAAGGCCACAATCGTTAAAGAAAGGGACCTTGATCCTTTCATCGTTTTTGCAC
TTGAAAAAGAAATTTGCAAAGCGGGTTATTAACGAATTGAGTTTA
Found at i:148735 original size:24 final size:24
Alignment explanation
Indices: 148708--148756 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
148698 CATTAGGATG
148708 TATATATTAATCATCCTATTTTAA
1 TATATATTAATCATCCTATTTTAA
148732 TATATATTAATCATCCTATTTTAA
1 TATATATTAATCATCCTATTTTAA
148756 T
1 T
148757 TAGGTTCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (24 bp):
TATATATTAATCATCCTATTTTAA
Left flanking sequence: Indices 148208 -- 148707
CGTATAGCCCTAATATATACGTCTTTTTTCCATTTTAGGATGGATATCTTATGTTTCCTTTAGTA
TAGTTTTCTTTTCCTTATTTAGTACTTGTTTATAGACTCGACGGTCGATTGCGCCATAGAATAGA
GATCAAAGCATCCATAGGCTCATTCATCGAAACGAAAATCAGAGAGACAGGAAAAGAAAAAAGAA
TTTTGATCAAATCAATAGAAGGAAGGATCCCTTACCTGATTTGAATTTCATCCTCCTTTAAATAG
GATATGCTCTAAGTCTTCCCATACTTTCCTATAATGACTGCAACGATTTTCTCCATTTTGCGAAT
TCCTATTTTATTTGAAGTATATTACTATCATATACATTATCTAAATCGATCCACTTTAAATAAAA
TAGAAAAAATCGAAAGAAAAAAAAAGAAAGAGTAAATAATAAAACAGGATATTCTGTTTCATAAT
TCTGAAATAGAGTTCTTTTTTTTAGTATTACTCCTCATTAGGATG
Right flanking sequence: Indices 148757 -- 149256
TAGGTTCTAATCCAATTAGTAGTAAGTATTTTCTTTTTTATTTAATAGTCTCTGACTATCATTAA
ATAAAGGGTAGAGCAATTCTTTTTTCTAGAGATTCTAGAGAAAGTGAGACAAAGTGAAGCGAAAG
AGTTTTCTTTGTATAAGAATTAGGTCTATATCATATCTAAATAGAAGGGAAATCAAAAAGAAGGG
AAGTGGGGATTACATTGGATGAATCCTTAAGGAAGACATATCACAAAAGAAATAAAGGCTAAAGT
AAGCGCTCCTTGCCTTTGGTTTGAGCAAAACAGATTCTTGTTTCACCGAGCCGAGGAAAAGAGAG
AAGTTCTGGAGAAATATTCCAACTGAATGGACTAATTGCAGTTCCGCCTATTCTACATACACGAT
CACATAACCCCCTTCTTTCCTTTCAGACTATGAACCAAGCTGACTAGCACGCACTACACTGACCC
AAGAACCAAGGAAAGAGAGTGCGGGGCCTTCCGTTCCTACTGTAC
Found at i:157160 original size:21 final size:21
Alignment explanation
Indices: 157136--157197 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
157126 TTCCTTGTTT
*
157136 ACGTAGCTCTTCTGTTGGATC
1 ACGTAGCTCTTCCGTTGGATC
* * *
157157 ACGTAGCCCCTCCGTTGGATT
1 ACGTAGCTCTTCCGTTGGATC
* * *
157178 ACGTTGCTCTGCCCTTGGAT
1 ACGTAGCTCTTCCGTTGGAT
157198 TACTTGAGTC
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.13, C:0.29, G:0.24, T:0.34
Consensus pattern (21 bp):
ACGTAGCTCTTCCGTTGGATC
Left flanking sequence: Indices 156636 -- 157135
AACAAAACACATAACTTACGTACCCATTGTACTTAGAGCCAATAAACTACCAAGAATCTTCTGTC
TCAACCACTTTCTTATTGTCTTTACATCGATTTCTAAATATAGGAAGGGAAAGTAACGGAGAGCA
AGCAAAAGAAATAAATCTATCAACGACCGACTTCGGACTAGAATCTAGAAACATACCTAAGGGAA
GAAAGCATATTTGAGGTTTACTCCTTCCATGTCTAGTAGGAGTGCGTGCTTCTTATCTTGACGCT
ATACATTCGGTTCAGTCAGTCCCTGAGACTTCCCAAGGTAATCTTACCAAACAAGCAACGGATTG
AGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATTCTCCACCACATCTTGCTTGGCTTGCTGA
ATCAGCATATGGATATGGATTACTTCATTGAATTTATTGGCCCGAGCTCTTGTGATTGGTCTACT
TGGCAGGTGGAATGGATCCTTAGCAGGTTCATGTGTTCCTTGTTT
Right flanking sequence: Indices 157198 -- 157697
TACTTGAGTCATTTCTTGGTTTACTTGGCTGCTCCGCAACATGCTGGTTCCTTTTGTCATAATAC
CTAACGGCTGTGGGCAGAATGAATGAAAAAGCAGATGAAAGACACTATACATACCAATAGAATGA
TAAATTTAGAATAAAGCTAGGTGACGTCACGGCATTTGAGAACCAATTGCTTCTTTTGCTTTTCA
CCAACCTTCATGTACAATCTTATTTCGTATTGGAGTACAGCCTATCGTAGGCCCAGCAAAGGCAA
GACGGAAAGCAAGCATTAAGTGAAGAAGCAAGGTCCAAACAAAGTAGTGAAAGATTTACATTGAA
AAGCTTCTCCATGTCTATATCTGTCCGATGGACCAAGTTCAAAGGAAACGGCTTCTCTACTGCAT
CAAAAAACCAATCCAATGAAAAGGTTAACGATTCCTATAAATTGAGAAAGAAGCATGTTCTTCAT
GCCCAAAAGCGGATAAAGTAGATGGAACCTGTTCTCTAACCTTCT
Found at i:168695 original size:6 final size:6
Alignment explanation
Indices: 168684--168709 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
168674 AATTGTCAGG
168684 TAGTAC TAGTAC TAGTAC TAGTAC TA
1 TAGTAC TAGTAC TAGTAC TAGTAC TA
168710 CGGCAAGTTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (6 bp):
TAGTAC
Left flanking sequence: Indices 168184 -- 168683
ATCGGCCTGTCCCGTATAATGAAGTCAATCAAAGGCAAGGGTGAAACTAGTCTTATGGATGCAAG
CTTGACTGGTTCTTAGTAGTCTTGGGTAATGGATCTCAGCTTGACTGGTTCTCCTATTTTCATAT
ATAAATGCTCCGGCCGTGAATTCCTTTTTTCTAAGATTAATTCCCGGCAGGGCGTAAACTCGAGC
AAGAGCCTGGGACCGGCACAAAAAACTAGGCAAACTGCCACTGGACTAACATCGGAACCGAAGAT
CCAAGGGGTCATATCAATATCATGGCGACTCACCACTAGAGACAAGAACTCAACCCAGCTAAGGA
AAAGCAAGTACCCGATAGCGGAGGAAATGGAGCTTCGCAGCGTAGGCTTGCTTTATGGCCCCTGA
GTGCACATCCTTGTTGTGGGGAAACCCGAGTAACTCACTACTTGAGCCCAGCCCATGGTTAGTAT
CACTTTTTGAATGGGAAATCTACTCTCCCGAGGGGAATTGTCAGG
Right flanking sequence: Indices 168710 -- 169209
CGGCAAGTTTAGTTTAGTCCCAACAACACCTTTTTAAACCTGCGAACGAAGAACAGAGTCATCAA
ATGGGTTCTGGGCATAGCATAGAGCTTCCGCAGGGCGTACGGTATTGGTTGGTACCTGTTGTCTG
TTCTGTACCTCATGTTCATGATTGGAATATGCATCCCGTAAAGGAAGTATTTCCAGTAGATCTTT
TCCCTCTCAGTGGAGAGGTGGGTCCCGCCTCGGCACATAAACTCTAGATTTCGGAAGCAAAGCAC
TGCAGTAAGCAAACCTTTCCTAAGCATCTCTAGCCTTCTCTTTTCCTAAGCATCTCTAGCGTGCG
TTCTCCATAGAAAGAAAAACCCAGCAGTCAAGACTAGTCACATACATGAGTGAAACAAGTGATTC
GCTGACATTCCATTCAAATAGTGCCGAGTAGTCACAGCTACGACAAGTTCTTCTAAGATAAGAGG
AAGGAGTGTTCCCTCATACGATCTACTTTTGCTTACTCCCTAGCC
Found at i:179129 original size:21 final size:21
Alignment explanation
Indices: 179103--179146 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
179093 GCCTAATCGA
**
179103 CTCGACCTTCTAGAGCAGATT
1 CTCGACCTTAAAGAGCAGATT
*
179124 CTCGACCTTAAAGAGCGGATT
1 CTCGACCTTAAAGAGCAGATT
179145 CT
1 CT
179147 ATACTAGACT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (21 bp):
CTCGACCTTAAAGAGCAGATT
Left flanking sequence: Indices 178603 -- 179102
ATGCATTCCTAGAAGCGTCTTTGCTTTCTTTCCGTCTGCGGGGGTACCAAATGCGATTCCATACT
AAACAAATAACGATAGCCCACTGAGGTTAGCGAGCCTGAAAGCCCTATTACTCAAGAAGGCTGGC
TGTTCTCGAAATAGCTTTGATAGAATGGTTTCGTGCTAATGCTGTTTCCCAACCAGGATTCTAGC
TACTAACACAATCAGCTCCCAACGACCTACTTGCTGCTACAGCTACTGGTACCAACCAATGCAAT
GCCGATCCCATTCCTTTCCTCTTGCCATGACGGATATCAGCTCCCAACAGAACGAGAAGAGAATA
CGACCGATGCCAAGAGCTTTCCTCGAACGATGACTGAGGAAACACATCCAACCTCGAATGCTGAG
ACAAGACCGGGCACACTTCTATAATATAATCAAAGTAATATAAGAAAAGGGCCGAGAACTTTGCT
TTGATACCAGTGGAGTGCGATGACATGATGACAAGGCCTAATCGA
Right flanking sequence: Indices 179147 -- 179646
ATACTAGACTTGTGGCTTCAGGAGATGAAAAGCTTGATGAACCCCGACCCACTAGACCAAGTGAG
TGATGTTGCATTTCGAGCACAGGCACCTTTGACCTAGCTTTCGACAGAGAGAGACAAATGGGAAT
GCCAGGCACAACTCTGTGCTTTGAAGCATGAGAGAACGAGAACATTTCCACTGCTTTAGTTGCTA
GAACCCCCGCCTGGAAGACAGCACTCATCCCTTCCTTAATTAAGTAGTACTAATCCCATTCCTTT
AGAAACCTGTCCTTTCCAGTGGAATAGCTTGCAGAGTAGAGTGATTTCCTTGCTTCATAGGTTTC
AGGTTCAGAAGACTCTCTTCCCCGTATACTGTATTTACTAGTCAGGCCCGGTGGAGCAATCTCGA
ATTCTCGTATATCAATGCTACATGAATGATTCACATAAGGGAATTCCAAGTGGGTCGAATAGGAC
TAGGGAGCTCGCTTCCATCTACTAAAAGTTCTCTACGGGTGGACA
Found at i:179837 original size:6 final size:6
Alignment explanation
Indices: 179828--179854 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
179818 TTCCATTTCC
179828 ATAGTA ATAGTA ATAGTA ATAGTA ATA
1 ATAGTA ATAGTA ATAGTA ATAGTA ATA
179855 CTGCCTTGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.15, T:0.33
Consensus pattern (6 bp):
ATAGTA
Left flanking sequence: Indices 179328 -- 179827
TGCTTTAGTTGCTAGAACCCCCGCCTGGAAGACAGCACTCATCCCTTCCTTAATTAAGTAGTACT
AATCCCATTCCTTTAGAAACCTGTCCTTTCCAGTGGAATAGCTTGCAGAGTAGAGTGATTTCCTT
GCTTCATAGGTTTCAGGTTCAGAAGACTCTCTTCCCCGTATACTGTATTTACTAGTCAGGCCCGG
TGGAGCAATCTCGAATTCTCGTATATCAATGCTACATGAATGATTCACATAAGGGAATTCCAAGT
GGGTCGAATAGGACTAGGGAGCTCGCTTCCATCTACTAAAAGTTCTCTACGGGTGGACAGTACAG
ACAGTTTCCTAGCTGGCACTTGAGAAGTGCTCGTCTAGTTTAGTGATTCCTAGCGTAGAACCCTT
CTGTATGAGAATAGTTTCCAGATTATGACCTTCTCTTTTGATTGAGTGAATAGCCATGCCATGGA
TTCTCTTTTCTGGGCTAGCTCTATACCATTTCCATTTCCATTTCC
Right flanking sequence: Indices 179855 -- 180354
CTGCCTTGGTGAATCCCTTATCTTGTTTGCAGCATCATTCTCGATCCCCTTATTCCCTTCCCAAC
AAGCAAGAAGGAATCATATCCTACGGCTAACTCATCCTTATATGGCTCCCAGATCCTTAAAGAGA
ATAAAAGGCTATCTCGAGGGATGGTCAGAGAATCGGTTTATCTTCACGGCACTAGACGGCACCTT
TATGAGTGCGTATAAGCTTGCTTTAGAGCTAGAGCGTGCATCTAAAATAGTTTCATATCCCTTTC
CATCGATCTTTCTTGGTGCTGTAGTACCCATTCCTGCTAGCTTGATCTGGTGGCCAGGACTATAT
ATAATAGTTTATTGAGTGCTTCTTGGGTTGGTTCTCTTGAAGTGCATAGCCCGGCCCCTTTTCTC
TTTCTTCCAACGGAAAGGGTTCTCTTCTGGTATGGAGTTCGACTAGAGCCTGCCGCTTTTCCAGG
TTTGGGTGTGGGTGGATCTCATATCTTAGAGGACAGGGCGGGGCT
Found at i:181501 original size:6 final size:6
Alignment explanation
Indices: 181490--181520 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
181480 ATCCCGCGAA
181490 AGTACT AGTACT AGTACT AGTACT AGTACT A
1 AGTACT AGTACT AGTACT AGTACT AGTACT A
181521 CTGGCAGCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.35, C:0.16, G:0.16, T:0.32
Consensus pattern (6 bp):
AGTACT
Left flanking sequence: Indices 180990 -- 181489
GATGATAATCCGTTGATGGGAAACTCACTTTGCTATGCTAGGAAACTGACTAATGAAACTAACAA
GTTCAAGTGCTCTAGTCAAGTAGTAAGCTCCAGTGGGAAGCGCTAGTCCAGATAGAAAGAATAGA
CAGGAGGATTGCCAGGTTGGTTCCGCACAGGTGCATATCTGTAGCACGGGATTCCAGATCGTTGG
TACCCGATGTTCAGTTCATGGGAATGGGAATGTAGGAAACTCTCTCTTCCGTCCGGAACATATAG
ATAGATTGATTGCTGTAGCAGCAAGTCAACTAGATCCAGTGAGGAATGAGAACCTTTCCGGGGGC
AAGGGGGGGCGAAGCTACTAGCTACTATTACTATTGGCTATGGATGTCCTAACACGAACGGAGTC
TATACGAGCAGAGGAAAGCGAAGCGTATTGGTTGGTTCGGATTTCAGCTGGTTCTATTCTAATCT
AACTAGACTCGCATCATAAGTTTGCCTGCTTTCAAATCCCGCGAA
Right flanking sequence: Indices 181521 -- 182020
CTGGCAGCTCCTATATGAGGTTGATGCCACGAAGATTATCATATCTACATGAAAGGAAAGGAAAA
TGAATGTGATGCACACTAGAAAAGATACCAAGCAAGAGGATGTGCGCAACGTCGCGCTCGAAAGT
CTTGTCTATGAAACCAAACCCTAGTTCCGTGAGGAGGAAGACTCTCTTCGGTCGAGGGATGGATG
GACTAGTGCCGTAAGGATGAGTGATGCTAGAGGGAAGTAGATCAATAGGTGCCGCTTGCTTACTA
CAGTGACAAGGAAATCAAACAAAGTAGTGGCCAGTCTGGTGAGTCAAGTAAACTTGCCAGTATGC
CGGGAAGCCGGTAATGCGAGGGTATCTCCAGTCGAAAGGATGCCGGATCCAACTAATACGGCTAC
GCTTGAGGAAGAAGAGTGCTCCTACTCCTACTTCAGCTTCTAAGAATAGGCCCGGTGCTAACTCC
ACCTTCCGGACTGCCCTTCATCGGCACGAAAGTAAGATTGGACAT
Found at i:188342 original size:6 final size:6
Alignment explanation
Indices: 188331--188355 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
188321 AACGAGGCCC
188331 ATCTAT ATCTAT ATCTAT ATCTAT A
1 ATCTAT ATCTAT ATCTAT ATCTAT A
188356 GTAGGTGGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (6 bp):
ATCTAT
Left flanking sequence: Indices 187831 -- 188330
TGCTGGAGGAAGAGGACGGGTGGGATGCCTGTAGAGAAGTGCGGTCAGAAACCAAACCCATTGAC
TTCTTATTGTTCTTTCGGGTGAAGTCAGATTCGTAAAACAAGGCAGCAGATAAGCTATGGCGATA
CATAACTCTCCTCAGTTTAGAAGACGGTATCTTTGTCCCCTTAAACTTAAAGGAAGAGAAGGGCG
AAGCATATACCAGTGTTTTGCCAACGGCACGAAGCGAATCTTGCAAGCCAGCCTAGCCCTACGCC
TAGATTGATATTCACAAGAACTACTACGTACGGTATTCACAAGAACAATAAGTTGAGAGGAGGAG
CAATAAAACTGGACGAAAGCAGTGGGAAGAAAGCGATGCCCGGGCGATGGTAGTACGAAAAGCTC
GACTCCTTTGGATTCCGGATTAGAAGTAGCTCCGGCTGCGGCTAGAAGGCAGTTATCATAATTTG
AGGATGATGGATCAAGCTAGATCGTATTATAAAGGAACGAGGCCC
Right flanking sequence: Indices 188356 -- 188855
GTAGGTGGGTCCCAGCTCTTTTTTTCACGAGGGTCAGTGCTAAAGCTCCTAAGTAGTCCACTATA
CAATAAAAGAATCGAAGCCAGAGGAAACAAGTGAAGGTGGATCAGCGATTCCTGCTCAGGTGGTT
CCAAAACTAGAAACTATTCCTCTACTCGCTATGCGAAAAAAACCTGATAAAATAAGTATAGTCTA
GATCGTACTCATGAAACTCATATAAGAACAAGGTATTGAAATTCATCTTTACAGATCGGAGGAAG
AGTAGGTTATTCAGCCCGAGACTCGAGATGATCGATCTTGAAATGAGAAGAGAAGGACCAAATAA
ACTATTCCAATGACTTTGTTCGCTTCCCCTGAGGCAACGGCTGTACTCGGCACACAGACCTGGCT
TATGAGCTGGATTTATCAGCCAAGTGCGTATGGTTGCTACCTGTATTCTGATAGGCCACTTAATG
ACACTGGCTCCCAGTTATTGACTTATGAAGAATGGCTTCTCGATG
Found at i:204519 original size:26 final size:24
Alignment explanation
Indices: 204462--204522 Score: 68
Period size: 26 Copynumber: 2.4 Consensus size: 24
204452 AGCTGGAATG
*
204462 ACCTATATGACCGGAACCACCTAA
1 ACCTATATGACCGGAACAACCTAA
*
204486 ACATCTATATGACCGGAACGGAACCTCA
1 AC--CTATATGACCGGAAC--AACCTAA
204514 ACCTATATG
1 ACCTATATG
204523 TATATGACCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
24 2 0.06
26 22 0.71
28 7 0.23
ACGTcount: A:0.36, C:0.30, G:0.15, T:0.20
Consensus pattern (24 bp):
ACCTATATGACCGGAACAACCTAA
Left flanking sequence: Indices 203962 -- 204461
AATCGAATCTAAGTGCCAGGAAGAAATAGTGCCAGTCCATTCTCCAGAGTAGAGTGGATCCTACC
TAGTGTAGATACCAATCTCAAGCAATGAAAGCATGAACATGTGCCACCAAAGAAATTGTATCACA
AGAAAGTATGCGATTACAGTGCCATGAGCTCCAGGATTACAAGCTCCAGGATGAGTTCCATGTCC
AAGCTTCGTGCTGGGATTAGAGACAATTCCTCTATCAGGAAGAGTTCCCTTTTCTATCTTGTGCC
ATCAGCAACCACAACATGTGCTACCAGAAATGCGTATTGAAAGATCAAGATTGCAATGAAAGCAT
GAACATGTGCTAGCAATCAATTCCAAGAAAGCGTATCATCAGCAAAGAAATCATAGGTAGAAGGA
ATCCCAGTGATTACTGCAGTTCCCGTAGCACACTCCTAGAGACAGTGCCAACCAAGAGTTGTAGT
GCAGCTTTCCCCCCCATCTCCTATCTATAGCTTATAGCTGGAATG
Right flanking sequence: Indices 204523 -- 205022
TATATGACCGGAACCTAAACAACCTACTGGACTTGCTTTGCTACTTGAGCCTAAGCTATATGATC
TGAACCAACCCTATCGGGACTAGATCCTGTCTACGGACTTGATCCTGTCATGTCAACGGACTTGC
ACTTGCCTGTCAATCTTGACGGACTTGATTGTTTCAATACGTCAATCAATACGGATTCTCTTTCC
TGTGGAAATGCTATCTACCTGGAAGGAAGGTTTGTTTCCCGAAGGAAGGAGATGGAGATTCTTTC
GCTGGAGAGATACTTTCTCATTGGAGAGGAGATACTTTCTCTTTTCGGGCTCGAAATCTGTCGAT
TTCTCTGATTTAAGGGCGCAAGCACAATACTGCACTCTCCCTGCTTGCTCGCCCGATCCGTCGAT
CTATGCTTGCTTCTCGAGAGGAGCAGTTCAAATCACCCTGTACGGATCCATTGGGATCACCTAGA
GCCGCGAGTCCAGTTGAGTGAATCCTTTCAGGCTGGATGGATGCG
Found at i:205145 original size:18 final size:18
Alignment explanation
Indices: 205124--205161 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
205114 GACAGCTCTA
*
205124 TCTCAGAAGTGAGCTCCG
1 TCTCACAAGTGAGCTCCG
*
205142 TCTCACAAGTTAGCTCCG
1 TCTCACAAGTGAGCTCCG
205160 TC
1 TC
205162 GACACCTCGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.21, C:0.32, G:0.21, T:0.26
Consensus pattern (18 bp):
TCTCACAAGTGAGCTCCG
Left flanking sequence: Indices 204624 -- 205123
ACTTGATCCTGTCATGTCAACGGACTTGCACTTGCCTGTCAATCTTGACGGACTTGATTGTTTCA
ATACGTCAATCAATACGGATTCTCTTTCCTGTGGAAATGCTATCTACCTGGAAGGAAGGTTTGTT
TCCCGAAGGAAGGAGATGGAGATTCTTTCGCTGGAGAGATACTTTCTCATTGGAGAGGAGATACT
TTCTCTTTTCGGGCTCGAAATCTGTCGATTTCTCTGATTTAAGGGCGCAAGCACAATACTGCACT
CTCCCTGCTTGCTCGCCCGATCCGTCGATCTATGCTTGCTTCTCGAGAGGAGCAGTTCAAATCAC
CCTGTACGGATCCATTGGGATCACCTAGAGCCGCGAGTCCAGTTGAGTGAATCCTTTCAGGCTGG
ATGGATGCGCTCTGCTCTCTTCTCGAAATTGCATATTGCATAGAGTAGTATTGTACGAAACGATA
TCTCGTAACGGAAGGATGGAAACCAAGAGAAAGAAGACAGCTCTA
Right flanking sequence: Indices 205162 -- 205661
GACACCTCGAGCTATTCAAACGAGTGTTCAGTCATCAGATCTCAATATCGGGTTGGGAATCTTTC
TAGACTAAAAAGTTTCGTTTTCGTGGGTCGGTGTCAAGTCTATCTCTCATGTTGCTCCTCAGAAA
ACGCGTAGAATAGTAATGTCATTGGCCCACTAGATAAGGATGGGACAAACGCTCTAGTCTATGCG
TTAGAAGGCAACTAGTATTTTTGGTTATTTTGGGAGGGAGTCTTTTTCTGTCTTGAGGGTTGGTT
TGATTGGAAATCGAAATGCCTCAACTTGATAAATTGACTTATTTCTCACAATTCTTCTGGTTATG
CCTTCTCCTCTTTACTTTTTATATTCTCTTTTATAATAATAATAATGGAATACTTGGAATTAGCA
GAATTCTCAAACTACGGAACCAACTGCTTTCGCACCGGGGGAACAAGATCCGGAGCAAGGACCCT
AATAATTTGGAAGATATCTCGAGAAAAGGTTTTAGCACCGGTCTC
Found at i:206670 original size:5 final size:5
Alignment explanation
Indices: 206660--206684 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
206650 TTACTACTAT
206660 ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA
206685 GTAAATTACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Left flanking sequence: Indices 206160 -- 206659
CCCTAGACGGAAAGTGAAGAAATTGGCTTCAAGCTTCGCCCTTAACCCAAGATGAGGTGGAGCCT
TACCCCGACACAAGGTGGGACCCTCCCATTAGGATAGTGGGCTTAGTCAGACCAACATAGGTTGT
CAACCAAAAAGGAGAAGCTCCCGTTATTGTTGGTTTATGGACCTAAGACGAGAGGATTGGGCTTA
GAACAAGACCTTTCGGTGGATATGATCACATCTTCATGACAAGAGGTGTAAACCTTTGGCCTCAC
TCAAGGTAATGGGTGACCAAACCTAACGAGTCTAAACAAATTGGATCTTATTGTGTGACAAAAAC
TGAGATTGGGAATGCTTGGCAGGTATTTGAGTACCAGTAAATTAGGGAAATCAAACACATAAAGA
AGTTTTCTTTCCAAGCCTGGTAACACAGTAAGTCGATTCAGATTAGCCAACAAGCGAATCCATTA
ACTCAGTCAACTCTTTCTGGTAAAAGTGCTCATCATTACTACTAT
Right flanking sequence: Indices 206685 -- 207184
GTAAATTACAGACAACACTCAATGCTAATGAGTGGATCAAGTCATTTACTAGTCAATGAACTGAC
TAAACCCTGTCTGTTCTGGGAATTGACCCACTTAACTATACTCTTAGGGCAAGCCGCCCTGTGGT
AATTAACTCCGTAAAATCTGTATCAGTCTTGAGGCAATTTGGAAATGCTAGACAAAGATATTAAT
CAGAGTCAGTCAATTCCCTAGCTACAGTTAATATGAAAAATCCCGGGTAGGTAATTCAAACACGC
CCCACCCAATAGGTGAATCTTTCCAAGTGTGGGAAATCTCCCCTTTCTTCAATCCTAGAATCGAT
GCCTAAGAAAAAGGGTATATCTATGAAAATGCTCAACCCATTCATGCGATTCAATCCTCTGCTCT
GATTCTATTAAAAAGGAAACACTCCACTAAGTCGTACACACTCCCCAATAAGTCTGGTAATTAAT
TCGTTCAAATCAATGCTCGGTGCAGCAGGTAATGTAACTTAATCA
Found at i:212209 original size:25 final size:25
Alignment explanation
Indices: 212181--212236 Score: 71
Period size: 25 Copynumber: 2.2 Consensus size: 25
212171 TTAGGTGGCA
212181 TTGGGAG-C-AGTAGATCATTTCTTTG
1 TTGGGAGCCAAGTAGATCATTTC--TG
*
212206 TTGGGAGCCAAGTAGCTCATTTCTG
1 TTGGGAGCCAAGTAGATCATTTCTG
212231 TTGGGA
1 TTGGGA
212237 TCTGCCGTGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
25 15 0.54
26 1 0.04
27 12 0.43
ACGTcount: A:0.20, C:0.14, G:0.30, T:0.36
Consensus pattern (25 bp):
TTGGGAGCCAAGTAGATCATTTCTG
Left flanking sequence: Indices 211681 -- 212180
TACCAACCGGGTGTGCGAAGTAGAGGAGAGGTGGCCCACGGGAATACAACCCAAGGAATAGTGCC
GGTGCCAGTAGTCAAATAGCTCAGAGTTAGCTCTGTTCGACTCTCTTTGTTCGTAACATTAGTAG
TTACTCACTGGGTGCAGCTACAGCTATGGGTCGGTTCGGTAGTGAAAAGAAGATATCGGTCCTGG
CACCTTTGGCACGGGCACGCGTGGAATAGGTGATTCCGTGGTAAACAAATCCTTTGACCGGCAGG
CCGAGGGATAATCACTGGCTAACCCTCTTCCTCATCCTTTAGAGCTGGAAATACCCGGCCTAGTG
ATAGTTAGAAAGAGTTGGCCATCGGGAGAAGAGATGGAAGTTTGCACTTGACGAGATAGAAGTTT
TCTCAACTGAGTTCACTCATTAGCATGGATCCGATCCATTCAATAATCCAATTCAGAATTGCGTT
TTCTATTCAATAATATCGATCGAACAATTTCGTAGTTAGGTGGCA
Right flanking sequence: Indices 212237 -- 212736
TCTGCCGTGATAGAAAATAAAATCCATTGTTCCTTTGACAACAGTGAGTTCCGGCATGATTGCTT
ACACAAGTGGTGGATTGGATGGCGGAAGAGAGAAGAGACCCGGTCCCGGTATGAAGCAAGCTAAG
GTTCTCATCTCCCGAAAGAATAGAATGAATGGAACTGTTGAATCTCTTCTCTAGCAAGCATCGAA
GAAAGTGTATTCATTCTCGGGTGTAGATCGGGGAATAGCTCAGGCTCTGGTTTCAGGTCTTGCAT
GAGGGAAGGTGCCGGGATAAAGGTCGGTTGAAAAGCACGGCTATACACGAGCTCAAGCTAGTGTG
TTGGCCGGGCCGGTTCGCAAGGATTGAGTTGAGTGAACTGGCTTTCCTATCGAATAGAAGGAAGT
GGTGCACGGCGCTTCGGAATGTGAAATAACGTATCAAATCTCCGGGGAAAAACAGTTGATGTGAA
TGAATGAATTGAAATATGCATGCTGCATGCCACCGAGAAAATAGT
Found at i:219447 original size:5 final size:5
Alignment explanation
Indices: 219437--219461 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
219427 CTTCTACTAT
219437 TCAAA TCAAA TCAAA TCAAA TCAAA
1 TCAAA TCAAA TCAAA TCAAA TCAAA
219462 CACAGAAACC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.60, C:0.20, G:0.00, T:0.20
Consensus pattern (5 bp):
TCAAA
Left flanking sequence: Indices 218937 -- 219436
GATCGGAGAAAAAAACAAGATTCACTGAATTATGATACGCAAATAGTCTTTAGTGCAGGAATGCA
GGTAGTACTTTTTTTCCAGCTAAGTGAGCAGCACTTGTTCTTCTCTTCGGACTCCGAGGCGGACT
TCCGTACTTGATTTTTCTAAAGCTAGGCCATCTTCTGCTGCTTCATTTAGGAAACCCTACCTAAA
CCCTTCAAGCGGCGGAATATGGGATAGGTAAGCTATGATTCAAGAAACCTGCCAGTCCTGAAGCA
AGGTAACTCATCTAGATCCAGATCTGGTTCATCACTGGCTATATTCTCACCGGCATGGCATCCTT
TGTGGATCGAAACGGAAACTGATCACTGGTTCTATTCGAAATCATATACCCCTGCTGAGCCTGCC
GCCTTACCCAAGACCAAGAAAGAGATCCGGAACATGAGAATAACCGGCACTTTCCCGGAGCATGC
CTGCCTGCAAATCGAATCCTATCCTATGAAACAAGCTTCTACTAT
Right flanking sequence: Indices 219462 -- 219961
CACAGAAACCTCAGCCGGAGATGGCGAGTCAAGTATTGCACGCCGGTTGGAAGTCAAGCTATCTG
GAATGCGGAGACCCCACCCGTAGCTGGTTCTAGATCCGGATAATCAATCATGCGGAGAATTTCAC
AGAACAGCTGGCATGCGCACTCAACTACTTACAAATGCCCGTGTTTTTCGTCATCACTAGGATTT
TGCCTCGGCAAACCAGAAAATGGATTTGAACCAGTGCAGCTCGCCATGGGACAAAAGTACGCAAC
CCAATGGCACCCTCGAAACGAGTACGAAGATAAGAAAACTTGCTCTCGCCAAGTGGCAAAAGAAG
GCCAGTTACCATTCCATTACCAGATCTATGCCCAGCCCTGGCCCTGAAACCAGACGACAAGAGCT
TGACTCCGTTCTTCGTGTACCCTTCCTTCTGTTCTTCGTGTAGCTGCACTCCACTCACAGTTGGT
TGACAATTCGGATTTTATCACTCGATCCAGTGAATTGAGACTTAT
Found at i:229024 original size:18 final size:18
Alignment explanation
Indices: 229001--229037 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
228991 CTGCTAAGAA
*
229001 ATATGAGCTGTTGTTCTT
1 ATATGAGCTGTTGCTCTT
229019 ATATGAGCTGTTGCTCTT
1 ATATGAGCTGTTGCTCTT
229037 A
1 A
229038 AAATCATTCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.19, C:0.14, G:0.22, T:0.46
Consensus pattern (18 bp):
ATATGAGCTGTTGCTCTT
Left flanking sequence: Indices 228501 -- 229000
TGGCCCTTTGCAATATGTATATTCCCCGAGGAAGGAAGGCTTGACATGAATACAGCTTAGTAGCT
ATCCATTCTTTCACACTCCGACGGCACACGCCATAATCTTTCATCAGAAGGAGCTTCATCATCAT
ATCATATGGTAAGGGGCATACGGCGAATTTGTAGAGGGACGGGTAAGGCAGTTCTGTGTTGCAAA
TTTGCATATCTCCATGATCAGGATCTCTGGCCAAAGGATAATCACAAATCACCAGCTGATAAGCA
AGCAAATAGAGTTGTCTCTTTGCATCCTAGTCTCCATTTCAGATTGTAACAGAACTGGTTGGTCT
CTGGCACTTTGTGAGTGGAGGTCCTCCGAAACAGGAATAGACTGGCACTAGGCGGAAGAGGAAGA
GAAACAGAAGCGGAGACTACCTAATCTAATAAGTGTCTGGTTTCATCGAATAGGGATGCTCGCTT
AAGTCTACTTGTACTTGAATTCCGCATAGCCCGTTCTGCTAAGAA
Right flanking sequence: Indices 229038 -- 229537
AAATCATTCCTTATGAGCTATGGCAAGTGAGCTGAGTCTAGTTTACTCGCCTTCTCCATCACTAG
ATGAGTGGGCAGTGCCGGACTCGAGGGATGGGATTCCCGACCGAATTGGAAGCATAAAAGCGCCA
TTCCGAGATTGATAGATATATCAATCTAAATAGGAATTGGAATAGGAGAAGAGCTAATTGGGATT
GGAGAAGAAGTTCCTTTGGAATGGAATTGTAGAACAAGTAGACAGGATTTCTACGAAACAGGATA
ATCCGTTGATTGGGAACAAGTCCGGATTGGATTCCTGCGTCACGGATCAGTAGCAGCAAGTAGAT
CAAAGCTAGTTCGGTAACATAAGCTCGGGAACAGGACTATTTGCCGGGGGATGATCACTTGGTTC
CGTAGGTTTCTTGATCTCATATCTATGGGCCAGTCCGATCCGAAAGGAGGAATGATGGTAGATAC
CCACTAGATAGCCGTCTTCCACTGCCTCGAGTCCAATCTCTCTCT
Found at i:229988 original size:19 final size:19
Alignment explanation
Indices: 229956--229993 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
229946 TTTGGCAGCG
*
229956 CCGAAGCAGAGGAAGGAAC
1 CCGAAGCAGAGGAAAGAAC
229975 CCGAAGCA-ATGGAAAGAAC
1 CCGAAGCAGA-GGAAAGAAC
229994 GACGACCTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 1 0.06
19 16 0.94
ACGTcount: A:0.45, C:0.21, G:0.32, T:0.03
Consensus pattern (19 bp):
CCGAAGCAGAGGAAAGAAC
Left flanking sequence: Indices 229456 -- 229955
GCCAGTCCGATCCGAAAGGAGGAATGATGGTAGATACCCACTAGATAGCCGTCTTCCACTGCCTC
GAGTCCAATCTCTCTCTATTGGCCAGAGGTGTCCAACACCTTCAGTACCGTTCTTTGGACGAGAG
AAGCCTTATCCTTCATACTTTCTGGACGTGTTGGTTTCCAATCTGACATTTTATCAGAAGGTTCT
GCCAATTTATCCCTACTGTAGTTTTGTGTCGCTTGCTCTTGTTTGCTGCTGACCTCTATTTTCTT
TCCCTCGATTAAGAGGCTAAATGAACTGGGTGCTCGAAAGTTTGTTGTGTCCGACGTCGCTCGGT
TGTATACCGTACGTTCGTGCTCTGGAGTTCATGCCTACAGGGGAGTGTTCAGCATCCGCGAATCG
AGTCACTGAAGGTTACAACAAGAAATTGAAGAGGATGGTCGAAAAGATGAACCAGGAGATGGGTC
CAGAGAGCAAATTTGTGTACGTAAATACGAAGGAGTTTGGCAGCG
Right flanking sequence: Indices 229994 -- 230493
GACGACCTAGGAGGTAGTAGTAGTACGAAGCCGGAAGGTGGTTTGATTCAGAAGTTGAGTGAGGA
GGCTTCGACCGTCGCCACAAAGATTCTTATGAGGCATGCTTCTGACGGGCTGCCACGCGGGAGGT
ACTGGAAGACTTTTCAAAGGGCTAAGTATAGGCACCGGGAAAGAGTGGGGGGTTGAAGTGGAGTT
GCCACGACGATTTCTGGTAAGTCGATTGCGGAGGAACTGAGAGGGAGAAGGCCGGGCTTCCCAGA
TTGTGCAAATTAGCCATTCCACTTCGGGGCCGTGTGCACATAGCATGGAGGCGATGCCTTATGCC
GTGGCGTCAATTCTAGCTTCTGATGCCTAGCTGTTCGCTTTTAAATTGGCACTTTGAGGGCGGAG
CGTGAATTAAGTAAAGGCTTATTTGTTCCTGAATGTTTCATTTTTATTAACCAAAACCAACATTT
ATCATACTTGCAACTAAGACCTCGAATGTTTGGAAAAGACGATGT
Found at i:254091 original size:5 final size:5
Alignment explanation
Indices: 254078--254122 Score: 74
Period size: 5 Copynumber: 9.2 Consensus size: 5
254068 CCATCAAGCG
*
254078 TACTG TACTA TACTA TA-TA TACTA TACTA TACTA TACTA TACTA T
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA T
254123 TTATTAGTCT
Statistics
Matches: 38, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
4 4 0.11
5 34 0.89
ACGTcount: A:0.38, C:0.18, G:0.02, T:0.42
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 253578 -- 254077
CTTCCTAGAAACCGCTCCCTCAGAATTTAAGTAACCGCCTGATAGATCACGTGCTTTGTGTGTGA
GACGATTCATGTCAGAGGCCTTCACCCATTTTGATGCTCTGCGATTCTTCCAATCTCGCGGAGGG
GACACCATAGGAAGTTCTGTAAAGAGCGGTAGATCCTTTATGTCAAATAGACACCTAACATAGTT
TACTGGCTTATACTTTTATCCTTTACCTTTATGCTCGGAGAGATCGACCTCTACAAGAGGATTGT
GGATCTCAATCAATTGATTGTTGTGCAGCCATGTTAATAGACCGCTCCCAATCGCATACTGTTCA
GAGGCAGTTTTCTCATCAATAGATTTACCCTTATCCGCCATTCTTTCACCCTTATTCTGTTTCGG
GCAATCCGTCTTCATATCACCAATCACCTTACCATCAACAACGCCTTCAACCGCACTAGCAATAG
GAGTCCCAGCCAAAACAGCTTCAAGTCCATGCGATCCATCAAGCG
Right flanking sequence: Indices 254123 -- 254622
TTATTAGTCTCTGGGAATGTGTTCATAGGCCAGGATCTGAGATTCCATGTGTCCTACTTCTCTGC
CTTGGAGGATATGTGGTCGATGAATGAATAAAAGGCAGGTGTCTCGATTGGCAATAGCATTTCGA
GTTGTGTTTTTTTCAGACTTGAATATTGATCTGGCGCACAGAGTTCTAGTGGTAGTCCCAAACTC
TGAAATGAGAATGCAAGCAAGGAAGCTCCAATGGCAATGGTGACTACTTAGGCGCCGCTATGTGA
GAAGCGGTATCAAAGAATAGGAGGGAATCAAATAAGCACAGCCTTCTCTTCTCATATATAGTTTA
TTTTATCTTTGATGAGAAAGCTCTTCTAATTAATTCAAGACTGCCTTGATTTTCCCAGTTATTAC
TCGAGCGCGCTGAGGCAACTCTGAACTAAGCTGGTAGTAGGTATGCTTCCCTCCAGCACCTTGAA
GATCGAGGTTTTTCTTTTTGAAAAGCGGATTTATCCATCCCATCG
Found at i:254644 original size:5 final size:5
Alignment explanation
Indices: 254634--254670 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
254624 CTTTGTTTGT
254634 TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TA
1 TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TAAAG TA
254671 TGGAATTCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.59, C:0.00, G:0.19, T:0.22
Consensus pattern (5 bp):
TAAAG
Left flanking sequence: Indices 254134 -- 254633
TGGGAATGTGTTCATAGGCCAGGATCTGAGATTCCATGTGTCCTACTTCTCTGCCTTGGAGGATA
TGTGGTCGATGAATGAATAAAAGGCAGGTGTCTCGATTGGCAATAGCATTTCGAGTTGTGTTTTT
TTCAGACTTGAATATTGATCTGGCGCACAGAGTTCTAGTGGTAGTCCCAAACTCTGAAATGAGAA
TGCAAGCAAGGAAGCTCCAATGGCAATGGTGACTACTTAGGCGCCGCTATGTGAGAAGCGGTATC
AAAGAATAGGAGGGAATCAAATAAGCACAGCCTTCTCTTCTCATATATAGTTTATTTTATCTTTG
ATGAGAAAGCTCTTCTAATTAATTCAAGACTGCCTTGATTTTCCCAGTTATTACTCGAGCGCGCT
GAGGCAACTCTGAACTAAGCTGGTAGTAGGTATGCTTCCCTCCAGCACCTTGAAGATCGAGGTTT
TTCTTTTTGAAAAGCGGATTTATCCATCCCATCGTCTTTGTTTGT
Right flanking sequence: Indices 254671 -- 255170
TGGAATTCTCACCAAGAGCTGCGGAACTCACGACTCTATTAGAAAGTAGAATGATCAACTTTTAC
ACGAATTTGAAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGAGTTTA
CGGATTGAACGAGATTCAAGCAGGAGAAATGGTGGAATTTGCCAGCGGTGTGAAAGGAATAGCCT
TGAATCTTGAGAATGAGAATGTAGGTATTGTTGTCTTTGGTAGTGATACCGCTATTAAAGAAGGA
GATCTTGTCAAGCGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCCATGTTAGGCCGTGT
GGTCGACGCCTTGGGAGTACCTATTGATGGAAAAGGGGCTCTAAGCGATCACGAACGAAGACGTG
TCGAAGTGAAAGCCCCAGGGATTATTGAACGTAAATCTGTCCACGAACCTATGCAAACAGGCTTA
AAAGCAGTGGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAA
Found at i:271922 original size:15 final size:15
Alignment explanation
Indices: 271894--271927 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
271884 TAATAGATCA
*
271894 AATGATATTATCTCT
1 AATGAGATTATCTCT
*
271909 AATGAGATTTTCTCT
1 AATGAGATTATCTCT
271924 AATG
1 AATG
271928 GCCCGTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.32, C:0.12, G:0.12, T:0.44
Consensus pattern (15 bp):
AATGAGATTATCTCT
Left flanking sequence: Indices 271394 -- 271893
TAGGAAATGAAAAGAGCTATTGTATTGTCTGGTCTCTTGTTAATTAGCAAAAGAAGTTCGATTGG
AAGGTGCTTATGTGACTTCTCTGTTGATACTATCTGTTCACGTGATTAACTCACATAGAAAGTAG
GCATATGCTTACTAAGTTGATTCCCTTCAATCTCTAGCCGTACGTACAAAGTATACTAGGGATAA
AATAGCTCTCTACCACTACAGTATTGAGCACTAGGGTAGGAGTTTCAACTCTAAAAAATGGAAAT
CCCCTTCAAATATGAATTTAATAAAGTATAGCAATCATGACAACCGATTTCAACCGTATGAGGGA
TTTGTATTGTAAGTTCGAAAAGTTTGTATTTGACAAGAGAGGTGTATCTAATATATTCCAAGTAC
CGGATATTGAATGTAGTACATCAGTGGAATCTGTAAATAGAACATTATTGTGGAAAGTAGTGGGT
TTATATAAGAAGTTATTATCTAATAATAGTATTTCTAATAGATCA
Right flanking sequence: Indices 271928 -- 272427
GCCCGTATATATTCAAATCGTTAAATGATCAACTAGCATATCATAGTAAGTTATATATGGATTCA
TTAACTAATAAAGATTTCATTCATCAAATATCATATGAAGTTTATGATCCGGGTGCAAATTATCT
TTGGACATCTCCTATTGTCAGTTTTAACGCAACATTAAATAAATGGAAGTTTGATTCTTGGAAAG
ATTTGCTATCTTTAAAACAATTTACACCCGGGATAGATGATGGTAATAAGTGGTTAGAAACAGTG
TTATGGCCAGCCTATAAAAGTGCATTATCAAAGAAATATTTTTTCATATCCAATAATTTAACCAA
TTGTTTGATAAAAATGACAACTATATCATCTATGGATGGAGGAATCAATACTGTATTGTATATGG
TAGTATTTTCGCACTTGTGTTTTTACACTACAGTTTGGTACAAGTTTATACCTTGTAATATAGAT
ATTCAACCAGATCAACTGCTTTATATGTCGTGGGATTACTTTCTC
Found at i:273025 original size:22 final size:22
Alignment explanation
Indices: 273000--273043 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
272990 AAAGATCAGC
273000 ATAGAAGTGATGTTCAGTAGAT
1 ATAGAAGTGATGTTCAGTAGAT
273022 ATAGAAGTGATGTTCAGTAGAT
1 ATAGAAGTGATGTTCAGTAGAT
273044 GCCGAGTAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.05, G:0.27, T:0.32
Consensus pattern (22 bp):
ATAGAAGTGATGTTCAGTAGAT
Left flanking sequence: Indices 272500 -- 272999
ATGTCAATCCGGGGAGATACTCCTTTTACCTTTGATGAGAATAGTTTTAACAATATGGCTATGTT
GAAAGAGGTCATACCACCAGAGGAACCAGCAATACAAATACCTATGGATAATATAGACAGAAAAT
GGAGAGTAGGGGTTAGTTTAGGTATCGTAATAGCATTCTGTGTTGCTATTGGTGTATTTCCAGAC
TAAACAACGAGAAGGAATCCACTAGCTCTCTTTTCCACACATGCACTGTCAATTCGATTGCCAAA
GAGTGATAAGACAAGTACCTTCGGCAGCTATCTATGGATGCTTGCAGCCAGGTCTGCAATGAATG
CATGCAGCTAAGTAAACTCCTGTCCTATCCTACAAGGCAGCCATACTTTACCTGAAGTCACACTG
GGCCAGGTTCCGTCTTTAAACACTTGCCCAAAAACCATCTCAAAATCTGAGTGAACTATCCGCTG
GAAAGCTGGAAACTTCAGTTGTATAGGTAGAGAGGAAAGATCAGC
Right flanking sequence: Indices 273044 -- 273543
GCCGAGTAAGTTGGAGTTTCTGAAGTGCTTGTTGGTAGTTCTCCCTGCGCTTGAATTCAAAAGCT
TATCCCATCTTTTCTGTGAAGAAAACGAAATAGTCAGGCGGGTCCCTGTCTGCCTAGTAGTACTA
TCTTTAGTTGTGGATTTTGTTTAAGATCTTCTTCCTTGAACAACAAGGATACGGAATTACGTTAT
TAGTACTCGGTTAACGTGTTGTATGTTATTGTGACAAATAAGCGAATAAGCATTGATTGAGAAAC
TAGTTTGCCCAAGGAAGGCCTTTGCTCTCGAAAGCCAGCCTATTCGTCTATGAAAAACGAATCCC
GTGTGACTGATCTTTACTAGTACCTTCTTTTGGCTAGCCCGTTTCCACTACTTTATTTACTAGAC
TCAATGCCTATGTTCTGGGCTATCTGTGAATGCTTTTCCCTGTGCTTCTGTTAGCACATTGTTTT
CCTTTACTCTCTATTTGGCCTTCGCTATTTGATTATTCTCTATGG
Found at i:292541 original size:18 final size:19
Alignment explanation
Indices: 292518--292554 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
292508 CGGCAATAGA
292518 TCTCTA-GCGTCAATTCAG
1 TCTCTACGCGTCAATTCAG
292536 TCTCTAGCGCGTCAATTCA
1 TCTCTA-CGCGTCAATTCA
292555 CTATCTAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
20 11 0.65
ACGTcount: A:0.22, C:0.30, G:0.16, T:0.32
Consensus pattern (19 bp):
TCTCTACGCGTCAATTCAG
Left flanking sequence: Indices 292018 -- 292517
GTTACTCGTTCGAACATTCATATCAGCTTGATCTGGCTCTACACAAAAAGAAAGACACGCACGCG
CATGCAAGAAGCGACGGGTAGCTTCACTCCTGTCCTTTATTATTGTTTTCTCCCTTCTCGTCTTT
CTGGCTCTACACAAGCTTAGGCTAGGCGCTTTTCAAGACAATTAATTTGATAGGAGGGTCAAGGG
TTAGGCATTGGCTCAATCTTATCGCTAGGCTACGAAGACTCTCCTTTCTATTAATCTACTCGGGA
AAGAAGAAAAGGCGCGAAGCAAAATAGCGAAAGCATACAAGCCAGCTGAGCAATCGTTTGTGCAT
CCCGTCTTCTTTCTCTACCCCGTGCCAACTTATTGTTCACCACTGCCTGCCACTTTCCGGACACG
GACTATTACACATTTCTTGCTGCTTTTCTAGAGTCAAGAAACACGTATCATGATGATCTTCATCT
GCTCGATTCCTGGCACTAATTGACCCTCGGCCTTGCGGCAATAGA
Right flanking sequence: Indices 292555 -- 293054
CTATCTAAAACTTCATTTCGAAAGATTTAGGGCCCATCGCACTCATAGGGAAGTGAGAAATAGAC
GATATTCGTCTTAAGAAACGGGGCTTGTCCTGTAGATTGTACTATCTAGTTACCTAGCCCACTGC
CCAAATGCCTTGACCACCTACTTGCTTGCGATATCTGTAGTAAAGATCACAAATGGATTGGAGCC
TGTGAAATGTTTTATATAGCAATCTAAAAGTTTTTACAGCAGACATTGAATACTTGCAGAGGTAC
ATTCCAGGTGGGCCAATAGTTCAAAAGCATTTTCATCTGACAATTTTTATGGCTTGATACTAGGC
CTAGCAGATGACATTTAGGGGCTTGAGAAATGAAATTAGACGGGCAATGCTGATGGACGTACCTG
CAGAATGGCCCATCCTGTGGGTGAAAATGCAAGGAAGCTTGCGAATATGTCACCAACTGTAGATG
CAGAACGGTGAAAAGAACTGCCAGCGTTCCAACAGATCCGATGAA
Found at i:292561 original size:20 final size:20
Alignment explanation
Indices: 292524--292561 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
292514 TAGATCTCTA
* *
292524 GCGTCAATTCAGTCTCTAGC
1 GCGTCAATTCACTATCTAGC
292544 GCGTCAATTCACTATCTA
1 GCGTCAATTCACTATCTA
292562 AAACTTCATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.24, C:0.29, G:0.16, T:0.32
Consensus pattern (20 bp):
GCGTCAATTCACTATCTAGC
Left flanking sequence: Indices 292024 -- 292523
CGTTCGAACATTCATATCAGCTTGATCTGGCTCTACACAAAAAGAAAGACACGCACGCGCATGCA
AGAAGCGACGGGTAGCTTCACTCCTGTCCTTTATTATTGTTTTCTCCCTTCTCGTCTTTCTGGCT
CTACACAAGCTTAGGCTAGGCGCTTTTCAAGACAATTAATTTGATAGGAGGGTCAAGGGTTAGGC
ATTGGCTCAATCTTATCGCTAGGCTACGAAGACTCTCCTTTCTATTAATCTACTCGGGAAAGAAG
AAAAGGCGCGAAGCAAAATAGCGAAAGCATACAAGCCAGCTGAGCAATCGTTTGTGCATCCCGTC
TTCTTTCTCTACCCCGTGCCAACTTATTGTTCACCACTGCCTGCCACTTTCCGGACACGGACTAT
TACACATTTCTTGCTGCTTTTCTAGAGTCAAGAAACACGTATCATGATGATCTTCATCTGCTCGA
TTCCTGGCACTAATTGACCCTCGGCCTTGCGGCAATAGATCTCTA
Right flanking sequence: Indices 292562 -- 293061
AAACTTCATTTCGAAAGATTTAGGGCCCATCGCACTCATAGGGAAGTGAGAAATAGACGATATTC
GTCTTAAGAAACGGGGCTTGTCCTGTAGATTGTACTATCTAGTTACCTAGCCCACTGCCCAAATG
CCTTGACCACCTACTTGCTTGCGATATCTGTAGTAAAGATCACAAATGGATTGGAGCCTGTGAAA
TGTTTTATATAGCAATCTAAAAGTTTTTACAGCAGACATTGAATACTTGCAGAGGTACATTCCAG
GTGGGCCAATAGTTCAAAAGCATTTTCATCTGACAATTTTTATGGCTTGATACTAGGCCTAGCAG
ATGACATTTAGGGGCTTGAGAAATGAAATTAGACGGGCAATGCTGATGGACGTACCTGCAGAATG
GCCCATCCTGTGGGTGAAAATGCAAGGAAGCTTGCGAATATGTCACCAACTGTAGATGCAGAACG
GTGAAAAGAACTGCCAGCGTTCCAACAGATCCGATGAACAAGAAC
Found at i:298298 original size:41 final size:41
Alignment explanation
Indices: 298253--298333 Score: 153
Period size: 41 Copynumber: 2.0 Consensus size: 41
298243 CTCAAGAAGT
*
298253 TTGTCGATATTTAATATATTTAAAGAGTGTTGGTATACTTG
1 TTGTCGATATTTAATATATTTAAAGAGAGTTGGTATACTTG
298294 TTGTCGATATTTAATATATTTAAAGAGAGTTGGTATACTT
1 TTGTCGATATTTAATATATTTAAAGAGAGTTGGTATACTT
298334 TACCAATTTG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
41 39 1.00
ACGTcount: A:0.31, C:0.05, G:0.19, T:0.46
Consensus pattern (41 bp):
TTGTCGATATTTAATATATTTAAAGAGAGTTGGTATACTTG
Left flanking sequence: Indices 297753 -- 298252
ATCGTCATCGTTCTTTCTCTTTTCAAGTTGGTGCCAGGTGCGCCGGTTTCGAGTGACAAGACTTT
AATGTTCATATCGTATCACAAACTATTTCGTATCACAATGATGCGCATTTGCTATCTTGCTTGAT
TCTCTGAGCGGGTTAGATGGGCTTAGGGATTTCCTGAGTTGACTCAGTTCAGTAAGAGACTCCTA
ATTCCTAAATCGCGGACTGGATCCATCGAAAGAAAAAGAATTCGAAGACGGGGCTGGTCTCTTTA
CGCCTCTCTTCGGCACTAGACCGAGAAGGCAGGTGGCCTGTGGATCGCTATATAGAAATGGGCAG
GGTGTCGGCGATCCTCTACTATTAAGAGACAGATAACAATGTTCCCTGTCGGTACCTGTTATTTG
TAATGATCCCTTGGGTGTGCTCTATCACGACTTGTGTGATAGTATGGGTGGGGGAACAATAAACA
TTATCCGACACCCTGGAAGATATGTGTTTAATATGCTCAAGAAGT
Right flanking sequence: Indices 298334 -- 298833
TACCAATTTGAAACTTGTCATAAATAAGGTTATTACCCGCCTACCTTTACTTTATTTGATTATTT
GAATCCTTTCGATGCAGGAACCATAGCTCAGACTGATGATCCCTCTCTCTCCTTAGGTCACCCAA
GGTAGAAAAAATGCCCCAAAGCCGAGAGTTCGATCCAAGTACTAACCCTCTAGTTGTGATTTCTA
AAGATTTCATTTCAACTTAGAGTAAAACATAATAGTTAACACTAAACCTAAGCAACTCTTACTTT
TCCATCAGCAACTACTTCCAATGGCTAAGAGTAAGCTCGTCCGGACCACTCCTATGGCCCTCTCG
GCTGGACCTACTCCCACCCTATCCGACTCCAATCCTTATCCAACTTCCACTCAATCATCTCCATA
AGAGTAGACTTAATAGCTATTGTTAGCCTCACTTTTGGAAAACTCACAGGATTGCTAGCTTTTCA
TAGAACCTGTTATCAAAACTTTCAAACTTCTGCTTTCAATATGGA
Found at i:316120 original size:11 final size:11
Alignment explanation
Indices: 316104--316131 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
316094 TTCCTCATGG
316104 GAAAGAAATAA
1 GAAAGAAATAA
316115 GAAAGAAATAA
1 GAAAGAAATAA
316126 GAAAGA
1 GAAAGA
316132 GATTATTCCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.21, T:0.07
Consensus pattern (11 bp):
GAAAGAAATAA
Left flanking sequence: Indices 315604 -- 316103
ACGTTCTGTTAGGCGCTATGAATTACAGGAAATTAAGTGGTTGACTTGGACAGCAGGCGGGTTAC
ACGTTCCACTGTGCCGAGATGTGAGGTGCAGGTGGTGATGATCACCCCGGGGTATGCGCTAGCGC
CCTTGACGGGCACTCCAGGACCCGCCTACGCTCGCCCAGGTCGGTCCTCCGACCAGATGTGTGGA
TAACGAGGCCACCTTCACAACCTTCTCCCTTCTATCTTTATCCAAAGTCAGGTAGAGCGGTTCGC
TTGAGTTGCTCAACCGTCCCTTTGCCCGGTGCTCATGACGCGCTACTCCACCGTGCTAGCGGCAT
AGGAGCCTACTCAGCGTCAGCGGCTTCGTGCCGCACTGGAGTGATCCAATATGTGGTTCCGCACG
TTCCACCACTTCTCCGTTCATTTCCAATACTGATCGTGAAACACCATGAGCAGCAGGATGTTGAG
GTCCGGAATTCGAAGTGAAATTCTTGATTTGCCCGTTCCTCATGG
Right flanking sequence: Indices 316132 -- 316631
GATTATTCCCCTAGAGCTTGTCCAGTACCACCTGTACTAAAAATGCATCTCCGCGCGTCTACCTG
GCGCTTTTATTAGCCGCCTTGCATGCAAGCGAAGCGCTATTGGCGGCAATTAATAGCTCACTGAG
CGATGATTGATGCAGTCAGTCAGTGCCCTCGATTATTCCTGATAGAAGGATCATGGCGCCCCGGA
AGCATTCCATCCAGCAGCAGCATCTCCTTCAACCACGCGAGGACAAAACTGATGTTAGCTACATT
CGAGCGTTCACCGCACAGAGGCGATCTCGAACACTACCTATGATAATAAATCCAAAGGAAAGGTC
GATAAAATGATTCAATCTGACTTTATCGGTATTCTGGATTGAGTCAAAAAGGGATATATGAAGTT
CAAGGCCTTGCCAAAACCGTCATGGCCCTATTATGTATAGGCCGTACTAAGCCAATAGCGAATAA
CAAACTCTTTCCTGCTCCCTCGACCTTAATTTAATTCACTCCCAT
Found at i:329911 original size:10 final size:10
Alignment explanation
Indices: 329898--329939 Score: 57
Period size: 10 Copynumber: 4.2 Consensus size: 10
329888 TGCTGTCCTT
*
329898 ACTTTACTTT
1 ACTTTACTTA
329908 ACTTTACTTA
1 ACTTTACTTA
* *
329918 ACTTAACATA
1 ACTTTACTTA
329928 ACTTTACTTA
1 ACTTTACTTA
329938 AC
1 AC
329940 ATACGCGTTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 27 1.00
ACGTcount: A:0.33, C:0.21, G:0.00, T:0.45
Consensus pattern (10 bp):
ACTTTACTTA
Left flanking sequence: Indices 329398 -- 329897
ACTAAGAGAAAGAAGTAAGCGGATCTTGCAGCAGTTTTCATTCCTTTATTTAGGTCTTGAACCTA
TTAAGTATAAGTAGAAGATCAAGCACTGATCTGATGGATCAAATGCTTTCACTACTCGATCAAGG
GCTTCCCAAAAGGCCTATTTACTAACTTCTCTTCGTTCCAGATTTCCGAATCGTTTTTTTAGTCA
TGTTAGCACCACGCTTCGCTTTCCGATATCTGGTATTATGGCTTTGCGCAGACTGACCACTACCT
GTATCGGCGACTCAATGTGAGTGTGTCGGTCACAGCCCAATCGAGGGCATACTTTCTAATCTTTC
TTTCGGCCATTCATCTTGCACTGCGTATTTGGATCCGATCCCTCCCTTATTTTAGCCAACATCCT
ATTAAGATGAAGATCTGCAATTTGCAAATATGAGAAAAGTGGACGCTGTACTTGTCTGAAAGCGG
AAACTAAGATGAAGAGCTTATTCTCATTACTGGCTTGCTGTCCTT
Right flanking sequence: Indices 329940 -- 330439
ATACGCGTTTTCGTTATGGACAAGCTCTCCTTCTGTGCGCATCGATCGACCGACGTAGGGATTTG
CATGGGGCGTTGCGCGTCGCGTCGGAGATTGTCAGACAATAAACGTTTCAATGGGTGTAGGTACA
GGGGGAGGGGGTGTGGCGTACGCCACTTACTTTCTGGTGTGCAGGATGCACTTCCCACATGATTG
TACAGTAGGCGTTGGAGCCCTCATCTGTAGGTACATGGAGGTGATCGCATATGCGGAGCAGCTTC
CTTCGAGATGCCTTTGACCCGCACGAGAGCGTTAACATCAAGGACGGAAGGATTCCCATGCATGA
TGCGTACAACTCTAATCGCGAAGCGAAGTAAAAAAAACAAACCGATGAAAGGAGAGAATGCGGGA
GACAGAATGATGTCGGGCCAGCACAAGAAGTCAGACTAAACAACCCATTCGACGCGTCGGGGGTA
CTCGACCACCGGGAGATAGGGATTTAGTGACTTACCAACCAACCA
Found at i:329916 original size:15 final size:15
Alignment explanation
Indices: 329896--329941 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 15
329886 CTTGCTGTCC
* *
329896 TTACTTTACTTTACT
1 TTACTTTACTTAACA
*
329911 TTACTTAACTTAACA
1 TTACTTTACTTAACA
*
329926 TAACTTTACTTAACA
1 TTACTTTACTTAACA
329941 T
1 T
329942 ACGCGTTTTC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 26 1.00
ACGTcount: A:0.33, C:0.20, G:0.00, T:0.48
Consensus pattern (15 bp):
TTACTTTACTTAACA
Left flanking sequence: Indices 329396 -- 329895
TGACTAAGAGAAAGAAGTAAGCGGATCTTGCAGCAGTTTTCATTCCTTTATTTAGGTCTTGAACC
TATTAAGTATAAGTAGAAGATCAAGCACTGATCTGATGGATCAAATGCTTTCACTACTCGATCAA
GGGCTTCCCAAAAGGCCTATTTACTAACTTCTCTTCGTTCCAGATTTCCGAATCGTTTTTTTAGT
CATGTTAGCACCACGCTTCGCTTTCCGATATCTGGTATTATGGCTTTGCGCAGACTGACCACTAC
CTGTATCGGCGACTCAATGTGAGTGTGTCGGTCACAGCCCAATCGAGGGCATACTTTCTAATCTT
TCTTTCGGCCATTCATCTTGCACTGCGTATTTGGATCCGATCCCTCCCTTATTTTAGCCAACATC
CTATTAAGATGAAGATCTGCAATTTGCAAATATGAGAAAAGTGGACGCTGTACTTGTCTGAAAGC
GGAAACTAAGATGAAGAGCTTATTCTCATTACTGGCTTGCTGTCC
Right flanking sequence: Indices 329942 -- 330441
ACGCGTTTTCGTTATGGACAAGCTCTCCTTCTGTGCGCATCGATCGACCGACGTAGGGATTTGCA
TGGGGCGTTGCGCGTCGCGTCGGAGATTGTCAGACAATAAACGTTTCAATGGGTGTAGGTACAGG
GGGAGGGGGTGTGGCGTACGCCACTTACTTTCTGGTGTGCAGGATGCACTTCCCACATGATTGTA
CAGTAGGCGTTGGAGCCCTCATCTGTAGGTACATGGAGGTGATCGCATATGCGGAGCAGCTTCCT
TCGAGATGCCTTTGACCCGCACGAGAGCGTTAACATCAAGGACGGAAGGATTCCCATGCATGATG
CGTACAACTCTAATCGCGAAGCGAAGTAAAAAAAACAAACCGATGAAAGGAGAGAATGCGGGAGA
CAGAATGATGTCGGGCCAGCACAAGAAGTCAGACTAAACAACCCATTCGACGCGTCGGGGGTACT
CGACCACCGGGAGATAGGGATTTAGTGACTTACCAACCAACCAGA
Found at i:335211 original size:6 final size:6
Alignment explanation
Indices: 335194--335223 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
335184 ATCTCAACGG
335194 AACCCT -ACCCT AACCCT AACCCT AACCCT A
1 AACCCT AACCCT AACCCT AACCCT AACCCT A
335224 TAGTACAGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
5 5 0.22
6 18 0.78
ACGTcount: A:0.33, C:0.50, G:0.00, T:0.17
Consensus pattern (6 bp):
AACCCT
Left flanking sequence: Indices 334694 -- 335193
GCCCATCCCGTCAAGCCCTTATTCTTCCGATGTCTCTCACGGAGAGTATAGAAGTTGGTCCTTTA
TTAATTAGTAAAAGCAAGCTATCGCACTGGGTAGCTACTCCTTGTTGGGTAGCCCCTCGGATATG
GTATATTGTAGGTCTCCAGCGTTGGCGCACTTCTTCTTTCGACAGAATCTCTCTTCTCGAGTGTT
GCTGGTACTTTGAATACTTATTTCACCCTGATAAGAAGGCTATGTATGTAGTCGTACTACACCAG
TGTTTAATAACAAATAGCATATCAAATTGATCCGCATCTTAACTCCAATCTTATTATTATTAGTA
ACGTATCCGTGTTCTTTCTTTACTGCGAACTACTTTATCAAGTCTTGGTAAAGGAGCTACTGTGG
AAGTCCCAATCCCAAGTAGGACTCTGTGTCTTTTCTTAAAAGAAAACCAGCGTTCCCAATCTAAT
AGAATATTATAACTCTTGTACAGTGGGGAAGGCTCATCTCAACGG
Right flanking sequence: Indices 335224 -- 335723
TAGTACAGTACCCTGTGTATAGAGTAATGCGAAGTCACCTTGGGCAAGTACAAGCATTCATTCTA
TCCGTAAGCTAAGGTAGTGAAAACCTTTATTGTGTAAGCAGTCGTAAGTCGGTAGGTGTGTGAAT
CGCAGTATGCTTAACAATGTCAGGACGAAAACTCTAAGAACCAGCCAGAGAATATTAAGTTAGTA
AAATAAGAGGAGTGTCCGAAGTTGCCCTCCATTCTAGTGGAACCATCTAAGTTGACTATTCAATT
AGTGGGCTTCTTTCACTTGAGTTTCTTCTGTTTACGGAGATCCTTAATCTTGCTGTATCATCGTC
CTGGCACATAGCTAGTGCGGCTTCAACGTCTTCTATTCTAAGCCGTGGGAAACTTCAGTCTGAAG
CGGAGATACCTAAAAGCGGCGTATGGACGCTTCTTCTAGCGCCGATAGGACAACCATAATTTTGC
AAACTGGCAGCTATCAAATTGACCACACCTGATCGGAAGCGCTTG
Found at i:344021 original size:17 final size:18
Alignment explanation
Indices: 343991--344032 Score: 68
Period size: 17 Copynumber: 2.4 Consensus size: 18
343981 TAAAGGAGTA
343991 AAGAGAATCGTATTAATT
1 AAGAGAATCGTATTAATT
*
344009 AGGAGAA-CGTATTAATT
1 AAGAGAATCGTATTAATT
344026 AAGAGAA
1 AAGAGAA
344033 ATTCAAATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 16 0.73
18 6 0.27
ACGTcount: A:0.48, C:0.05, G:0.21, T:0.26
Consensus pattern (18 bp):
AAGAGAATCGTATTAATT
Left flanking sequence: Indices 343491 -- 343990
TGGAAAGAGAACTCGCAAGTAAAGAGACATAGAACTGTATTTGCTTTGATTTGCAGCTCTATCCG
AGATATATTGACCGGATTAAGGATTTGAAGAAAGGAATAATGATGTTCACCAGCAGGGCCTCTTC
TAAACAACCGAGGTACCTTTAAAAAACTATACACACTCTTTAAAGTGGGACCCCCTCTCCGCGCG
AGCTGGGAACCGATATTCGATTAGTGCCAGTGGGTTCTCATCCAAGCAGAATCAAGGAGGCCATG
GACAACGCTTTTCTAAGGCGGATTGTATACACATCTGGCCTCACCAGTTGCATCGTATCAAAAAT
CGCCATTCCTGAAATTACCGACTTTCAATCTTTTTCTGAAGCTTGAAGGAGACAGAGAAGAGAAG
AGAATAGTCAGAAATCAATCATTAATCATTATTTTTATTATTTTGAAAACCGTCCGGACAAGTCC
GGACCATTCGCTAATTACTGTAATTTATCATAGAGTAAAGGAGTA
Right flanking sequence: Indices 344033 -- 344532
ATTCAAATTGGAATTGGACTCAAGCCATTCTTCGAAATCGAACTATTCCTGTATCGCAACTTGAA
AGGTGGGTTTAGGAAGTCGTGGCACTTTTTGGATTTCGGAGGGAAGTACTCCACTATCCGTATTC
AGATCTCTTTCTCGGGCTAAGGGCTAAGTGTTGTACCGTGCATTTCCATATCTTCCGTTGGTGGA
GAGTTCTCGAATGAATAAGTTTCCATCTGCCTATGGGATTGGCAATGTCCATATCTGCCCCGGGG
CCAGCGCGGACTCTCACTCGGGAATCTGGTAAAGAGAAAGACAACTCTCTTTTTCTCCGGTTATC
ATATAGCTAGCTAGTTTCTCCGGATCTAGCTAGTTTTTCCGTAGATCTATTGGTAAGATGCCCGC
CTATTGGTCTCCGGTTTCATCCTGTTATTAGTTCTCAGGAGTTGGGAGAATAGAAGTCTTGCCTT
GGCGGCCCACTCATATTCCATATTCTGACTTGACTTTTTATTTTT
Found at i:349757 original size:5 final size:5
Alignment explanation
Indices: 349721--349756 Score: 63
Period size: 5 Copynumber: 7.2 Consensus size: 5
349711 ATGTGTTCTA
*
349721 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ACAGT A
1 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT A
349757 CGGATTCACT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.42, C:0.03, G:0.19, T:0.36
Consensus pattern (5 bp):
ATAGT
Left flanking sequence: Indices 349221 -- 349720
AAGATCTTCGTCTTCCACACTATAATATAATAATCAAGGATAAGAGTTGTAATTCATGAGTCACT
TCTATACTATACTAATCCCTGCTCGTCCCTAGATTCGGAACAACCAAGGAATGAATAGAATATAA
CCGGGAGTTCCTCATGAATTAGTCGTTTCTCGCTTGAAAAGAATAGAAAAGAGAATATAAAGCCA
GCATCTGATTCTGCTACAAAGCATATCCATCCTCCTACCATACCAAGCCTGAGTTCCTTCGTTGC
GAAATCGAAGGATAAGAGTTGTAACGTGACGAATATAAGAAGGCGGGATCCTACCCTCCACTCAC
TTCTCAAAGGACAAGACAGAGGCATTCCAATATTTTTTAGAATATTCGGAAACTTACAAGAAAAA
GATACAACTGAACTTAGAACACTTAAGACAACACTTAGAACACGGATCCCATGCATTCATCCTTA
GCTCCACTCACTGTGGCATGGCACTGGGTGAAGAGATGTGTTCTA
Right flanking sequence: Indices 349757 -- 350256
CGGATTCACTCATGCTTCTGTTTCCACTGTCAAGTTGCGAGGGACAAGACAGATCGACTAGACTG
TGTTGAACGAATCACGTATAACGAATGAGTATAAAGACGAATTGGTATGATTCCCTACTGCCAAA
GCTGGACAGATAGATTTCTTTCTTCTCGCTCGTATCCACTGATGATTCCTATCTCGGTCTAGGCA
GGCCTCTCTCGTAAGCACCACTTGTAGATGCCAATGGAGTGAGTAACACTTAATGTATGTTACGA
ACATAAGAGACTCAGTTCTGTTCTATAAGCAAAGCAAGAAAACTACCACTTCACTGGAGGGACAA
GAGTGATCTGATCTTTAGCCCGCAAAAAGAAAGATCTTCGTACAGGCCCAATCTCTAGAGTAGAA
GAGTAGAATATAGATTAGATGCTTGACTCCGTTGATACGAGATACAAGTGTTCCGATACGATACG
AGCTCCAATGCTATGACTATGATATGATACTTGGGGTATTCCACA
Found at i:351607 original size:18 final size:18
Alignment explanation
Indices: 351584--351636 Score: 63
Period size: 18 Copynumber: 2.9 Consensus size: 18
351574 ATTCGGAACA
351584 AATGAGTCACG-ACTAATG
1 AATGAGTCACGTA-TAATG
**
351602 AATGAGGAACGTATAATG
1 AATGAGTCACGTATAATG
*
351620 AACGAGTCACGTATAAT
1 AATGAGTCACGTATAAT
351637 TCATGAGTAA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
18 28 0.97
19 1 0.03
ACGTcount: A:0.42, C:0.13, G:0.23, T:0.23
Consensus pattern (18 bp):
AATGAGTCACGTATAATG
Left flanking sequence: Indices 351084 -- 351583
TTGAAAACTATCTACCTACAGGGTTCCTCGGGTCTCTTCTCAGGTTCCTTGCTGTACTGAAACAT
CTGCTAGCAAAGTGCCTGGGGAGTTTACTGAGTAAAATTCATAGTTTTTTAAACGTGATATGCAA
ACATCTCATATTCCATAGTTGAGAATAGGGGACTTACGAATCGCCATTCAGTTAAAACCATGGGG
AACTTAAGTTTGAATCCCCAAGCCGTCAAGAGGTATGTGCCCGTTGACAGGTACTTTAGAATTGC
CTAGCAGTTTCCATACTTGAGAATACCCAATTCGTTACTCTTCCTTTAGATTAGAAGAGAACTCA
CCTATTAGTTTAGTCCATCAAGTGCAAGTCTGTATCCGTGCAAGCAAGTATGATTTCGAGCATAT
CCCGTCTGTTGAAGCCCGTGATAAGAGTGTATGTTCAGAGGAGGTGAGGGAAACCGTTGTCAAAA
GAATATGCTCCTTAGGCCATGAATGCTTTCTTGATATTCGGAACA
Right flanking sequence: Indices 351637 -- 352136
TCATGAGTAACTACTAACGTTACGAATAGAAAGACGAATATAACCGGTAGTTCCTCATTGGATTA
GCGAGGGGTACTTGACTTCCAGTAGGAACCGTGGAATGCCTTAGGCACTCGTATCGTATCATTGG
ACTGGCCTAAAACGAAAGATACAGTGAAGTCTGGACTGGGTGTGAACTCCTCTATATTCCCAAAG
CAAGGCTTGTCCCGGATAGGAGATACGCTTTCTTGGAATTGTTGGGGTTGACTTGGGCTTGGGAG
AAGCATTTTAAGTGTGTAATATCGGAGTTGATATGATTGTCTACTCTTGATGAGATTGGACTGCC
CGAAGATCAGAAGAAAGTGTTAGCTGTATTTCATTTCCACAGAATGGTAAGTTCATAGGTTGTAG
TTCACTGGTTTGGTTCGAAAGAAGAACGTATCGCCAATAGAGCGGTGTCGTCACCTGGATAATAG
CATTCTTTCATTGGACTAAACTAATTAGTGTCGCCATGGGAATAA
Found at i:352466 original size:5 final size:5
Alignment explanation
Indices: 352456--352496 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
352446 TTATATTACC
352456 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT A
1 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT A
352497 GCGGCCGAGG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.41, C:0.00, G:0.20, T:0.39
Consensus pattern (5 bp):
ATAGT
Left flanking sequence: Indices 351956 -- 352455
ACTGCCCGAAGATCAGAAGAAAGTGTTAGCTGTATTTCATTTCCACAGAATGGTAAGTTCATAGG
TTGTAGTTCACTGGTTTGGTTCGAAAGAAGAACGTATCGCCAATAGAGCGGTGTCGTCACCTGGA
TAATAGCATTCTTTCATTGGACTAAACTAATTAGTGTCGCCATGGGAATAATAATCTCTTTATTC
GGAATTCCTGGTCAATAATGACCCTTCGGGACAGATGTGGGCTTTTTCGCAACTGTACAGGCCAT
GCCATTCTCCAGATAGATCCGAGTAGAGACGATACGAGAGTAGAGTTCATTCATCTTAGTAATCC
GAGGATGTCCAATCTTTCCCTGGAATTCAGTGTGAGGTGAGCTAAAGAGATAGATCCCCACTCCC
ATAGGAAATCCCCCCCATGGGGGCGGGAGGGATTTTCTATAGGAACACTTGGGGATGGGGAGAGA
CGCACCATGCTTTGGTAAAGGATAGAGAGACTAATTTATATTACC
Right flanking sequence: Indices 352497 -- 352996
GCGGCCGAGGACTTGCATCTATTTCAACTCAACTAGACGTGAATACGGTCTTTCTCCACGGCAAC
AACGAGGAGGAGGAGATCCACATTTAGAGGGCGAGGGGTTCGAAACTCGGGGAGGTCACATATGG
TTGTGGAAGAAGAGCTTGTACGGGCTCCGAGGTCAAAGAAATTCGACAAGTTCTTGGTCGATCGA
TACCTTTCCATCCCGGGGCAGATCTCCAGATCCGATACGAGTGTAGATACTTTACTCCCTTCTTC
CTCAGTGAGTAACGTATAATGTTACGAACAAAGGAAGTGAGTCTAGCTCCACTCCGAGGGACAAG
ACGGAAATCTTCTACCGATGCCAACTGCAAGGCGTGCTTTCCTATGAACCGATTCTTAGACTACA
GATCTCATCCCAACAGAAACGATCTACTTGTACGAAAGAAAGAGAGATGATCTACTTGCAGCTAC
TGTTTGTTACCGCTGAACATCTGCTACCAATACCAAGAAATACCA
Found at i:359895 original size:5 final size:5
Alignment explanation
Indices: 359885--359909 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
359875 CAAGTAAGAG
359885 TCTAC TCTAC TCTAC TCTAC TCTAC
1 TCTAC TCTAC TCTAC TCTAC TCTAC
359910 ATAGTAGGCT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.40, G:0.00, T:0.40
Consensus pattern (5 bp):
TCTAC
Left flanking sequence: Indices 359385 -- 359884
CCCCTATCGTAAGAATAGAACGCGAAGCCAGGTTGATTGATGCCGATGTAGTGCATATTCTCGTA
GGAGATGAGAGTTTCATCACGAGCGAGAATCTCCCACCATCTGCTAGATCTTGTTCTTGGTTCTG
TTGGCTACTCTCTGGTGGGGCCCACCCTATGTTGTCCCAGTGTGTAAACTTGCCTATGATGGGGT
ATTGATGCAATAATACATGAGGGCCGATGTAATTGCATCATACTCAAGAGGATGAGGAGGTCATC
TAAACCCTAATACCTAAGTAGGATAAGACAATCTCTTTTATCCCTAAGCAATTTTATTGATAGAA
TATAGCCTGGTAAGCACTAACCTTGTCAGCAAGCTGAATAACCTATCCCTAATAAGCTAGCCCTA
GTGAGTTCTTGAAAGTAAGGCAGTAGTCTCTAAGGACGAGCTTTGACCAGTAGTGAAAGTGAAAA
GCGAATAAGAATTGATTTCTTAACTTCTCTTTTTTCAAGTAAGAG
Right flanking sequence: Indices 359910 -- 360409
ATAGTAGGCTAGAACTAGGGCTCTACGGCTGGCGTCCACTTGCAAAGGACCAATTCGACTCTGAG
TTGTCGTAAAGAAAATAAAATCCTTTGGCACTTTCATGCGTGATGGGTTGAAGCCACTCCATATA
AAAGCGTTGTCAAGTAGGCAAGGTGTGGAAAGTAAGCTGCTTCTTCTATCAAAGAGATAAATAGG
GCATTCCTTCCATGCCTATTCTTCAATGGAAGGTGCTCCATCCTCCTTAGATGTCACCAGCCCTG
CCTGGGCGAGGGAGGGAAGAGATGGATGGCTAGTAGGGATTTAAGAGCAGTAAGGCGAGCTATCG
TTGTAAAGAAGAAAGTGTCTTTCAAAACTTTTTCTTCCAAAAGAAAAGTACTACTTTCGTTTTGG
TGATTGAATGAGGAAATAGGGAAATGAACTCTTTAGTTTAACTCGAACCGACTAAATAGAAAAAC
CATGTTTACGAAAAATAGTAATTTTATCTGGCTCTTTTTCCTGTA
Found at i:363605 original size:6 final size:6
Alignment explanation
Indices: 363594--363637 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
363584 TTGATTCTAC
363594 TATAGA TATAGA TATAGA TATAGA TATAGA TATAGA TATAGA TA
1 TATAGA TATAGA TATAGA TATAGA TATAGA TATAGA TATAGA TA
363638 CGGTGCTGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (6 bp):
TATAGA
Left flanking sequence: Indices 363094 -- 363593
ATCCATTGCGATGTCTGCCTGATCGAACTCGCCCTCGGAGGAAAAACTCTCCTCTTTCCACTCAA
GTATGTTGCACCGTATCTGGTGTGGTATCCTCTCTTTTGATATTTATGCTTACGAAAGCCCATAT
TGTAAATAAAGAGCACTTCTTCCTCCTTAGTAGCTTGATTGCTGTTACACCTGTACTGCGGATCT
TTACTATACTATACTATACTATGGCATTGGTCAATTGAAATCGTAAGAGGTTGAGAAGATCCTTT
TCTCATCTGATGCTTTGTTGTTTGCTCCGAGACTCATAAGAGGTGAAAGAACACAATGTTACTAC
CGGATTTCAAGTGAGTGTACCGGTCTTGTCACTACAGATGGTAGTTGCCGAACCCATTGTTGAAC
ACGCAGCCTTCTTACCGAGAAAAAACAAAATGCTAGTTCTAACGAACAGCGTTTGTCCCATCGAC
GAAGGCTAATGAGACTTGCCTGCCTTTCTTTGCCCTTGATTCTAC
Right flanking sequence: Indices 363638 -- 364137
CGGTGCTGCAAATTCGCAAGCTGATCCTAATCCTAAGTATAAGTCAAAGTAAAATCTTTGTCTCA
AACCATCCCAGCAAGAAAACGGATGCGCCTAGCGCTAGTTGCTCAATCCCTTGCTTGTTTGGAAC
AAGAGTTTTCATAAAAAGAATGGTTCTTTTATGCAATTATGAACGGGCAGGCCTCTTGTGGATTC
CTCCAACTCCATGAATGAAGGGGGGAGTATGAGGAAGGCCGATTTTCTTTCTATATGAAGATGAA
AAAAGGATCAGGGTCAAACATTTCTTACTTTTGTTGAGTATGACTGAATGAGGAAGAGCTCCTTA
TGTGGTATCACTTTACCACCATCTGAAATGCGCGAAACTCCGATTGGTGGAAGCCAGTCCATGAA
GATTCTCCCTTCTCTTACGTGAAATTCCCCTCTTTCGGTAAGCATCCAGTATCTCAGCAAATGAA
CATTTCTCTAAGCTTATCCTGTAGCTTATACGTCGTTTGAAAGCT
Found at i:364687 original size:7 final size:7
Alignment explanation
Indices: 364665--364737 Score: 128
Period size: 7 Copynumber: 10.1 Consensus size: 7
364655 TTGGCCAATG
364665 ATACTACT
1 ATACTA-T
364673 ACTACTAT
1 A-TACTAT
364681 ATACTAT
1 ATACTAT
364688 ATACTAT
1 ATACTAT
364695 ATACTAT
1 ATACTAT
364702 ATACTAT
1 ATACTAT
364709 ATACTAT
1 ATACTAT
364716 ATACTAT
1 ATACTAT
364723 ATACTAT
1 ATACTAT
364730 ATACTAT
1 ATACTAT
364737 A
1 A
364738 CGCGTTTTCT
Statistics
Matches: 64, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
7 56 0.88
8 3 0.05
9 5 0.08
ACGTcount: A:0.42, C:0.16, G:0.00, T:0.41
Consensus pattern (7 bp):
ATACTAT
Left flanking sequence: Indices 364165 -- 364664
GTTTGTTGACGATCCCTGGCTACAATCCCAGGAACATCATAAATAGTACCTGCGACTCCTACTTT
GACCACTTCGCATATTGGCTTTATATTATCTACGGCGTCAACCATAAGTTTGATTACATCGCGTT
CAGTTCGAGCTAGGCGGTGAAAAGTTTTATAAACAATAGCACGAACTCTCGTTCTTTTACCATCG
ATCATGCGAAAGTTTACCAATTTCTTGATCAATTCTTTTTGCTCACCATCAAAGTCCCCCATATA
GCTGAGAATTTCCGAGCAATTGGAAGCCGCTTTCGATGACGAGGCCGATAAATTGATATTACGCG
ATCGTTACTGTCCATCTTTTTCAGCTCTGCTCCCAAAAGAGAAAGGAGACTTAAAGAGAAATATG
TGGGCGTAGGTTTTTCCAACGAAAAAAAAGAACATTCGAACAAATAGACTTGATTCCATGACAAA
ACAAAATGCTAGTTCTAACGAACATCGACTTTACTTTGGCCAATG
Right flanking sequence: Indices 364738 -- 365237
CGCGTTTTCTGAGGAGCAACATGAGACTTGATTTTCCGTTGGTTTTTCTATTTTCTAACGAAAGT
ATTAATTAATATGCAGGATAATATAAATGGTTGGTTTTGTTCAATACTTAGGTATAGGTAGGGCT
GACTACGCCACCTCAGCAGCTGGGACTGGAATTGCTTACAATGCATCTGGCCACTGACTGAATTC
GAAGTAGGGCCAGTGTATAAAGACCGGCTTATCTCTCTTAAGACTTAGTCCACTTTCTACTAGAA
TCAGATTTTCTAGTTTGCAAGCAGGTGTGCCAGCTGTAACAAAAACTTACGGCTTAGGTGGATTT
CTTTAGTCAGTCTATAACTCAGGCTTTTCTTTATAGGACTCCCACACAAGTAAGTAGCTAGCTAG
CTGGTATTGCCAAAGCCAAAAACACTGCTGCATTCGAAAAGGCGAACCGCGCGGACCCGACTTCT
TCCTTTTATGCTGAAACTAGCCGCCGGAGCCCGGAAGGGTAAAAA
Found at i:367571 original size:5 final size:5
Alignment explanation
Indices: 367561--367585 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
367551 TGAAACATCT
367561 TAGTA TAGTA TAGTA TAGTA TAGTA
1 TAGTA TAGTA TAGTA TAGTA TAGTA
367586 GAGAATTTGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.40, C:0.00, G:0.20, T:0.40
Consensus pattern (5 bp):
TAGTA
Left flanking sequence: Indices 367061 -- 367560
GAAGCTTTCTTTCTTGGTCACCGGACAGAGTGAGAACTGCTCTGCTTGCTTTCTTTCCCTAGCAC
ACACTTAGTAGATAGTAGGCACAACTCCGCTAAGAGCTCATCGAACTTTACTTGTAGAGTGAGAC
CTGTGCTCGATATGGTTCATTTCAGTGCTCTTTCTCTCGGTATGGTTCACCACATGCCTGTGATC
TCTCTCAAGCTAGGTATCGGAGAAGTCCGTCATGGAATTGAAGTGGTAGAGTGGTAAGTGGGCGT
ACGGTCTATGGATTTCCTTTCTTATCAGTGGCATTAGTTCCTTTTCATTCTCTAGATAGATGAAC
AAGCTTCTCTTTATATTATAGAATAGAAAGGATCAAAAGGGCTCTCTCATCTCCTATTTGTTTGA
GCCATTCATTATAGTGGTGGTGCCGGGAAGGCAGCTTAGCACTCTAGTCCTTTTGAGTAAGGAAT
TGTAGCACGGGCAGGCAAGAGACAACCTAGCGAACTGAAACATCT
Right flanking sequence: Indices 367586 -- 368085
GAGAATTTGGCGTTGCCACATAAACATATAAGTAAGGTTGTGGACCAACTATCCGGCATAGAGGG
AAAAAAAAGCAGTGTGCCTTCTACTCATCGCCCAATGGGTACTCGACCGACTTCAATTGGTTCAC
GATGTGGTTGAACTCGCTTATCGGCGAGGTACTTTAGGCCATTTTGAGGAGCCGACGCAGGAGAT
GAAGTTTGTTTGAACTAAAGGGCGAAAGCTATATATAAATATACCGAAATGAAAGAACTGCTGTT
TTTAGCAATTGAAAGTTGGGGAAATCGCTCAGTTGGTTAGAGTGCTGGCTCTGGGAATCCACGGA
TCACGCCACACTCGGACAGTTCGCCCATTGCCAATATGCCAGATGATGGATTCCTTGGTTTTAGT
TAGTCGCTGCTCTTTCTATGGCAGTGGTTGATCCTCTCGTCGTGGGTCGGTTTAGTCATTAGCTC
GAGAGGACAGGGGAGAGATAGGAGACAATCTATGTAACCTTAGCC
Found at i:391330 original size:18 final size:18
Alignment explanation
Indices: 391307--391341 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
391297 CCAGAAGTGG
391307 TTACTCTTACTAATACTC
1 TTACTCTTACTAATACTC
391325 TTACTCTTACTAATACT
1 TTACTCTTACTAATACT
391342 AAGGTTGATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.26, G:0.00, T:0.46
Consensus pattern (18 bp):
TTACTCTTACTAATACTC
Left flanking sequence: Indices 390807 -- 391306
AGCAATGAATGACCTAGCCTAGGTAGTCCTATGTTTGACCAATGCTGCCTTGTATGTCTTGATCC
AAGATTTCTCAGCAAAAAAAGACATGGGATTATTGATCAATTCACCATCCTCTTCATGCTTCCAC
TTTATCGTTTGTGGCATGTGCATTATGCAACAAGTAGATTCCTGATAAATGAACCTTCTCCACAG
GACCAGCAGGTACCTCAGCAGTCCACTACTACTACTGCTGGACAGCCTAGTTCTTCTACACCACC
AGCTATAGCTCCTAATGATCCATCATCAATCAGTTCGACTTCAGTTCCACCTACCAAGCCGAAGC
AGCCATTTCCAGAACGGTTTGAGAAGTCAAGTGAAGACAAGCAGTTTGCTAAGTTTCTTGAGATG
ATTCAAGATGCGCAGATTACCATCCCCATCCTTGATGCTGTCTTACATGTTCCGATGTATGCAAA
GTTCTTTAAGGACAAAGAAGCGAAACATTAACGAGCCAGAAGTGG
Right flanking sequence: Indices 391342 -- 391841
AAGGTTGATTTAAGTTTCTCTGGTTCTTGATTGAGTCTTTGTCTTGCAGTTGCAGGAGTGATGTC
AAACCTCTTGCTTGAGTTGTCTGTATTGGAAGTCGTGTAAGCGGCTTCTTCCGAATCGGGTCTAG
TACGTATGAAAAGATGTCAGCGTCGTGGCGATTGCCTTTCCTGGTGGTGAAGGATTCTATTCCCG
AGCGGCTAAGGTCCAATCCGGTATTCTATTTCGTCTGTGCGAGCATTAAAACCAACCATTGCCGA
CGTCCTCATATTCTCTAATTTGGCTAATCTCCGTGCATTAGCAGGTTAAGCAAATCGATTCCAAC
TCAGTGGCAGATAGGCTGCAACATTTCTTTCCTAATAACTAAGACTTTCTTTACTACTTTACCAA
CCCATATCACGCTAACTGATACTGTGCCTAGTGATTGATGAAGGTCACAGAGGAGTAAGAATAGC
AAAGCCTACAAATAATGTGATAAGAGTTCGGTTTGGCGTGGCTGG
Found at i:396224 original size:5 final size:5
Alignment explanation
Indices: 396214--396249 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
396204 GGTTACTACT
396214 GTAAA GTAAA GTAAA GTAAA GTAAA GTAAA GTAAA G
1 GTAAA GTAAA GTAAA GTAAA GTAAA GTAAA GTAAA G
396250 GTGCCGGAAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.58, C:0.00, G:0.22, T:0.19
Consensus pattern (5 bp):
GTAAA
Left flanking sequence: Indices 395714 -- 396213
CGAGAGAAAATCTGCTTGTCAACTTTTGGACCATGGTGAGCATCACTTGATCAGATCTTAGGACT
CTCTATCGAGGAAAAACGAAATTCTGTGGTCCCTCAAGTTTTAGAATCTATCGTCTTCCGTTACG
AGATATCGTTTCTATCTATGACATTCTATGTATGCAGAGGGACCTGGCCAATGGGGAAGAAGAAC
TTGTCGAAGGATCTCCATACCTAGAGGTACCGGTGATTCACCAGATCTAATCTAGAGTCGTAGTC
AACGTCTTTAGGAAAGATGAGTGACCTTGGCATAGGTTTGCTGCTTACGGTTTCAAGTAAAGACA
GTTTCCTATTCGTAGGTTTCAGGGTTACTCTTCTGGCTTGAAGGGTTACTCGTATTGGTTCTTCT
GTTTGCTGGTCCAGAAAGGGAAAAGGTTGATTACTCATTGGCTAAAGGGAAGGTTGATTACTCAT
TGGCTGGCTGTGCTAGTGAACTACCTCCAACTATGGGTTACTACT
Right flanking sequence: Indices 396250 -- 396749
GTGCCGGAAATAATCTAGTATTTTCCTCACCTCAGTAGGAAGGATTTGTGGTTCCTCATAGCATT
TCCACCATATGTTGCATTTCTGTATTCGAATTTGAGATAGCGAGTCAAGGTATTCTTCCTCAGTC
TCGTATTCTCCATTCGAAGCGCCGTGTATTCGTTCTCTGTTCCGGAGAAAGCACTCGTTTCGTTT
GTTCCGGCTCGTGATTCGCGTATTGGTATTGTTCAGTTCGCTAGGATAGTGGGAACTGACACATT
GATTCGTAGCAGAAGCGCCGTATGCCATTCCATACAAAGCAGTGGTCAAAATCGATTCCTCGTAT
TCTGGTTCTGGTTCTGGGAAACAGGTCTTTCGTATCGAGAAGTGATAAGTCTTTGGTAATCTTGG
TAATCAGAAGTGGCAACTCGGCAATCGTCCAAGGAAGATTCATAGGATTGGTCTCTTAGGAAAAC
AAGCATCTCAATCAAGTATCAAGTCAAAGTCATCTGAGTTCCCGC
Found at i:398931 original size:18 final size:18
Alignment explanation
Indices: 398908--398945 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
398898 AGCATAGATC
*
398908 GACGGAGCTAACTTGTGA
1 GACGGAGCTAACTTCTGA
*
398926 GACGGAGCTCACTTCTGA
1 GACGGAGCTAACTTCTGA
398944 GA
1 GA
398946 TAGAGCTGTC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.26, C:0.21, G:0.32, T:0.21
Consensus pattern (18 bp):
GACGGAGCTAACTTCTGA
Left flanking sequence: Indices 398408 -- 398907
CTTTGCAAAAGGAAGGTTCCTTCACCAGGCGGTATGCACCGAAAGTACGAATAATTAGACCTGCT
GCCATTCTTAAAACGCACCTGTGTCACTACAGTTCAAAACTGCAACAAAACAGATGCATAATGAG
ACCGAGGAACCCATACCATTACCGATGGGAGGCCCACAAAAGCTATGATTAGGAATCCGGGAGTG
GTTTAAGAAAGAAAAGGAGTTGTTAGCGATTCTCGTCAAGGAAGTGTTCCCTCGACTCGACCTTC
GGTAGAGTACACATATTAACTCGAAATGCAGCAGAAGACACCTATTTAATCGATTAATATCCAAA
CGATCCTATGGAAAGCAGATTCGGATTTCCTAGACCAAAACAGCCCATATTTCAACCAGAAATGA
ACGAATAAAGGCAACTCCAGGAAAAACCTGGTACCCGTTACTTCGACCAGATCCCAATGGATCCG
TACAGGGTGATTTGAACTGCTCCTCTCGAGAAGCAAGCATAGATC
Right flanking sequence: Indices 398946 -- 399445
TAGAGCTGTCTTCTTTCTCTGCGGCAGGGCAGTGCACCCACCCATCTCTTCCTCTGTCCAAATGA
TCCACCTGATTGGTCCTTTCGGGCATATAGAGTCAGTCTCATCCAGAGCATCACGAGCTTCACCA
CTACAACCATCTGACATTCATGCACGAATCCATCCCTCGCACTTTGTTTCGCTAGCTGCCCTACC
TCGTAATGGTGCCAGTGCCGGCCCGGCTCGATGGTGGACTCGGGAATGGTCAATCCAGATGTAGA
GAGCTCCCTAAAAGGAAACCTGTTTTCATCAAAGACAACATGTCTGGAAATAAAAATTCTTTTAG
TTGGTATATGAAGGCAGCGGTAACCTTTCTGTTGTGGTGCATAACCAAGAAAAATACACGGCATC
GAACGAGGCTGAAGCTTGTGATCAATGTAAGGTCTGAGGTGAGGCTGTCTGAGAATACGAAGATT
CGGGTCTTTATGAAACAATTGTGTGAAGGGAGAGAGAGAAGAAGA
Found at i:419592 original size:29 final size:29
Alignment explanation
Indices: 419532--419593 Score: 81
Period size: 29 Copynumber: 2.1 Consensus size: 29
419522 TGCATAGGAA
*
419532 AGAAAGGAGTGTGTTTAGCGAGTAATAGG
1 AGAAAGGAGTGTGTATAGCGAGTAATAGG
* *
419561 AGAAAGGAGTGTGTATGGCTAGGTAATA-G
1 AGAAAGGAGTGTGTATAGCGA-GTAATAGG
419590 AGAA
1 AGAA
419594 CAATAAAGGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
29 23 0.79
30 6 0.21
ACGTcount: A:0.37, C:0.03, G:0.37, T:0.23
Consensus pattern (29 bp):
AGAAAGGAGTGTGTATAGCGAGTAATAGG
Left flanking sequence: Indices 419032 -- 419531
TCTTTCTTTTTATAATAGATCTATGCTGTAGTTCCGTAGCAGTGAATATCCTCCGCAAAGGAAAT
ATTCGTATTCGTATTTTAGTAGAGGAGGCCTTGCCTCAACCTTAGCGTATCTCGGCTATGTCCCA
ATCGTGAAAACTCTCGATTTGAATGCACTTTTACAAGCAACAAGAGTGCAATTGGCAACTGCCTC
ATATCGTTCATCTAATGATGTGGTATACAACTATAAAAAAAAGAAAATCTTTACATTGATCATAT
CCATGGCATGGGTCGTATCAGAACGAACAAGGAAAAGATTCATTAGCAAAAGCACCCGAAGCAGA
TGGATCAACATAACCACAATTGACCCTGTTTTCCACCTACTAGCAGCAGGAGTATTCATTTTGTT
CTGGAACACTTCCCAAATCGATATACGAAGAAGGGCAATCTCAGTATTTAAGTAAGAGATTTATT
ATACGTATGCTAATCCATGCATCTGGAATGATACTTGCATAGGAA
Right flanking sequence: Indices 419594 -- 420093
CAATAAAGGAATCAACACCTGCGTATCGTTCCATTCACTAGTACTGTACAACTACTACTAGCTTG
TAACACTCACTAGCAAAAGTCATTCTATTCATCGATACAGACTACTAGGGCTGAATACATACGTT
ACTCTCATAGTTTCACAAGGTTTAGAGAACTACTAGTTCTGTTTCATTCTACTAGTCGTTCCAAT
AGCACGGAATTCCCATCTCTTGTACCGGGACCAGTAAGACCTATTCCTTCTCTTTCTGTCTAGCT
TGAGGAATCATGGTGGACTTTTCTTTCTGTTTAGCTTTACTTATCAAAGACTTCTCCCCCCAGCG
GTGAAGGAAGAGGCCTGGCACGACACACAAGTCGGGAGACATCACTCCTCAATAAAATAAGCCCT
TAGGCGATTGAAGTGAGGCAAAAAGCACACCACCCTCGAGTGAACTATAGAACAAGGGAACTTGT
GAACAGTTCTATTGAAGGGTATGAGTAGGCGTTGAGCTCAGGACT
Found at i:440620 original size:5 final size:5
Alignment explanation
Indices: 440606--440654 Score: 91
Period size: 5 Copynumber: 10.0 Consensus size: 5
440596 TTACTCTCTA
440606 CCTA- CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT
1 CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT CCTAT
440655 AGTAGATTGA
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
4 4 0.09
5 40 0.91
ACGTcount: A:0.20, C:0.41, G:0.00, T:0.39
Consensus pattern (5 bp):
CCTAT
Left flanking sequence: Indices 440106 -- 440605
GCGAGTTCACCTTCCTAGTAACGTTTGCTCATTTCTTTCCTGAATCAGAGTTTTGAGTAGCCGGG
ACGGACATGAAATTAAGAAAGAGCCCGCACGATCTAGATGCACTGAAAATGGCTATAAAATATCC
AGTTTTAGAAAACAACACTCTCTCTCTCTTTACGAGAATTTCAAGTGGGTTGGTTCAATTCCTAG
CTTTTTTGGATTTGTATTGCCTTACGAACTTGCTAACTAAAAGAAGGTAGGTCCACAAACAAGTC
TATATTGGAATAGATAGAGAGCATTTTTCCCCCTTGTAATTTCACAAAAAGTGGAGAGCCCTAGC
ATTGAATGAACGTAGTTACTTATCGAATTACCTGAAGTGAAGGAATGCCCAGACTTATTTACTTG
TCCGAATAGATGGTAGGCCGTAGGAAAAGATAACTCATGCCTACTTTACTTACTTGCCCAAGCCC
TACCTACATATTTTACTAGTAGTTCTTTCGGAGAATTACTCTCTA
Right flanking sequence: Indices 440655 -- 441154
AGTAGATTGAGTCGAGTAGTGATGAGCACTTATATATACCAGTCCGAGTATGGAATCGAACTAAC
TCATACATAGGAATTCCTTTCAGGTTGTCTTGCATTTACTTTTTCTTTTATTTGTCCCGAAGAGA
CAGGGAAAGCTTTACCAGTTGAAAACTGCGGACGGATTAGCCCTCATTAACTTAAACTTATGAGT
TAAGTTTAGTAAGGAGCTTTGTATTGCCGCTTTTCCTAGATATAGCTATAGCATAGTAGTGCGTT
TGCGATAAGATTGAATTGAAACTCGAAGTGAGAGCATGCATTTCCAGCCATACGGAGAGAATTAC
CCGCCTACCTGGATGGCCTGGCCTGCCTAGTAGTTCTTTTGAGAAGAAGTGCGCGCACATCTTAA
TTCCAACCCATTTCATGGATTTTCTCTAGCTACCTCATTTCAGTAAAGTTAAGCGGGTCGCCCTT
TAAAGCCCCAGATTACCTGGTGGGGCTAGAGTCTATTGTTCAAAG
Found at i:461048 original size:20 final size:20
Alignment explanation
Indices: 461023--461061 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
461013 TTTGTCAACT
461023 ACTTTACGATACTTAACTTA
1 ACTTTACGATACTTAACTTA
*
461043 ACTTTACGATACTTTACTT
1 ACTTTACGATACTTAACTT
461062 TATCCCCAGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.21, G:0.05, T:0.44
Consensus pattern (20 bp):
ACTTTACGATACTTAACTTA
Left flanking sequence: Indices 460523 -- 461022
ACAAGATTCCTGCTTCGTTCAAAGTCCTAGTCCTGTCTCCTGATATCTCGCCCGCTATTTCTATC
TCCGCTAAACCTAGTCACTTGGCTAGCTATACTTCTATAGGAACTATCTAAGCTATACTTTACTT
GACATGACTGCCTATCCTGGAACTCAAAGTCTTAAATACGTCTCTCTTGGCTACCCGTGACTTGC
GTTGACCTATCCCTACTACTTGGTTATTAGCTTACCCTTTTATACCTATTAGAAACCCTAGCTAG
CTTGTAAACACCTATCTCGTGCTTTACTTCTATACTGACCTAAACGTGAACTGAACAATATGCCT
ACCTTTTTTATGTTTCTCAACAATAAGCATCCCGTAACCATATGCCAACAAACAACTCCTTAAAA
TGCTTATATGTATACAGCTTGGCCTTGCTATTCACAAATGTCTATCAGCTTCTCCTGCTTCTATA
CTTGCCTATCTGTGACATGACCTATTCCTACTTGCTTTGTCAACT
Right flanking sequence: Indices 461062 -- 461561
TATCCCCAGACCTATAAACAATGGGTCTCAATTCGGGAGGAAGAACCGGTAAATTGTACATACGA
ATGTCAATCTTCATTTAATACACTGGTAGGGGTCGATCAGGCAAATCCCAAAGCCCCGAACTGCT
CTACTGATCTTCTCTCTCTTCAGACTCACTGAACCTTCTCAAAGACTCCTTTTGCACTGAGAACA
CAATTAAGAACCCTCCTTCTCACAAGAAGGCAAACCTTGTACGTTGATCGAATCTTCTTTCGCAT
CCAGAAGAGAGGCTGTGGGCTATCCGAGAGAGTGGTTCAGGTGACTACCGGAGTCATTGATTAAG
CAGGTCAGATGGGCTTAGTAGGGCTCGAACCTACAATATCACCGTTATGAGCGGTACGTTTCAAC
CAATTAAACTATAAGCCCAATCGGATCTCTACATGCCGGGAAGAGCGGACAGAAAGAGGAGACCC
TTTGCTCTATCTCCTTCTTCCTCTTCCCGGGGTTTTTCCCCGGAG
Found at i:476293 original size:15 final size:15
Alignment explanation
Indices: 476273--476303 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
476263 TGCTCTACCC
476273 AACGAAAGCCATAGT
1 AACGAAAGCCATAGT
476288 AACGAAAGCCATAGT
1 AACGAAAGCCATAGT
476303 A
1 A
476304 TAGTTGAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.48, C:0.19, G:0.19, T:0.13
Consensus pattern (15 bp):
AACGAAAGCCATAGT
Left flanking sequence: Indices 475773 -- 476272
ATCTCCTCGAGTAAGGAGCGCCAAAAAACGTTGTAGTCCGCAATCGCACTCTCACGCCGGATACC
AGAGAATAGATTCACACGGAAAGCGCTTATTTCCTGTACTGACGGGAGATTCAGGTTCCTCTCAC
GCAAGATACCTTCCATTTCTCTAAATAAGGGGAGGGCTCGGAGTACCCTATGCACATCCTCCACC
GATTCCAATTGTGATTCTCGATTTAGTGGGATTCCAGGCATCCCACGAGTTGCAATCATAATGGG
TTTACTACTTGATAATAGCATTTTTCTATCCGTTAATAAAAATATCATCGTACTTTTCCATCTTT
TTCAGCTCTGCTCCCAAAAGAGAAAGGAGACTAGACTGATCCATTCTTGACGTCGGCGTTGGTTT
TTCCAACGAAAAAAAAGAACATTCGAACAAATAGACTTGACAAGACAAAATGCTAGCTTCCCAGT
ACAGTAACGCATACACTATAGACTTTATTCTCCCGTGCTCTACCC
Right flanking sequence: Indices 476304 -- 476803
TAGTTGAGAACAGGAGCGGGAGACTGAACACCGACACAATGTCGATTTGACAGATCATCGCCATC
TCTTTTGATGTAACGAGCACTCTTTCACGAACTTCTCGGACAAAACGCAATGCTCGTTTCGCATA
CACTAGAGCGTTTGTCCCATCCTTATCTAGTGGGCCAATGAGATTACTATTACTATTACTATACG
AATTTTCTGAGGAGCAACATGAGACTTGATTTTCCTATAGTCTGGCTACTATACTATACTATACT
ATACTATACTATAGAACCCTGGGCCATGTTTCCCGAGAGAGACTGCCTTCTCTCAGGCCAGCAGT
CTTATACTTATAGTCGACTGCTCTATGACGATCTGACCTCTTTCCTGGGCTCTGCTCGCTCGTCT
ACGCTCCGACCAATTCAGTCAAAATCGAAAAAACGATGTTTCGTCTAAGAATAAGAAATAGTAGT
AGTAGTCAAAAAGTGCACTTTTTCCATATATTTCGAGGGATCCCT
Found at i:476555 original size:5 final size:5
Alignment explanation
Indices: 476545--476576 Score: 64
Period size: 5 Copynumber: 6.4 Consensus size: 5
476535 ATAGTCTGGC
476545 TACTA TACTA TACTA TACTA TACTA TACTA TA
1 TACTA TACTA TACTA TACTA TACTA TACTA TA
476577 GAACCCTGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 476045 -- 476544
TAATAGCATTTTTCTATCCGTTAATAAAAATATCATCGTACTTTTCCATCTTTTTCAGCTCTGCT
CCCAAAAGAGAAAGGAGACTAGACTGATCCATTCTTGACGTCGGCGTTGGTTTTTCCAACGAAAA
AAAAGAACATTCGAACAAATAGACTTGACAAGACAAAATGCTAGCTTCCCAGTACAGTAACGCAT
ACACTATAGACTTTATTCTCCCGTGCTCTACCCAACGAAAGCCATAGTAACGAAAGCCATAGTAT
AGTTGAGAACAGGAGCGGGAGACTGAACACCGACACAATGTCGATTTGACAGATCATCGCCATCT
CTTTTGATGTAACGAGCACTCTTTCACGAACTTCTCGGACAAAACGCAATGCTCGTTTCGCATAC
ACTAGAGCGTTTGTCCCATCCTTATCTAGTGGGCCAATGAGATTACTATTACTATTACTATACGA
ATTTTCTGAGGAGCAACATGAGACTTGATTTTCCTATAGTCTGGC
Right flanking sequence: Indices 476577 -- 477076
GAACCCTGGGCCATGTTTCCCGAGAGAGACTGCCTTCTCTCAGGCCAGCAGTCTTATACTTATAG
TCGACTGCTCTATGACGATCTGACCTCTTTCCTGGGCTCTGCTCGCTCGTCTACGCTCCGACCAA
TTCAGTCAAAATCGAAAAAACGATGTTTCGTCTAAGAATAAGAAATAGTAGTAGTAGTCAAAAAG
TGCACTTTTTCCATATATTTCGAGGGATCCCTATCTTTATCTCTATCCACAGAGATACCTATCTA
TTCTATATAGAGAGATATTTTTATAAAAATTGATCTAGACTATCCTCTCCTCTATCCGGATAGAT
ATGTCCCTATGAGCGAAGCGACTAGGCCGATCTTTTTTTATATGTTTTGGCCACGTCCGTTTCCG
CTCCGAAGAGGAAGGTTTGGATCTTTCAATCTTATGTCGTGAGGGATGTGACCTATGTTAGGTCC
ATAAGATACCACAGCTTTTAGTGTTCTATGATTCACCTCCGAATA
Found at i:478927 original size:34 final size:35
Alignment explanation
Indices: 478887--478959 Score: 139
Period size: 34 Copynumber: 2.1 Consensus size: 35
478877 GTTAATCATT
478887 CGCATGCAGCCTCACATAAACAACAAATAACAA-G
1 CGCATGCAGCCTCACATAAACAACAAATAACAACG
478921 CGCATGCAGCCTCACATAAACAACAAATAACAACG
1 CGCATGCAGCCTCACATAAACAACAAATAACAACG
478956 CGCA
1 CGCA
478960 ACACTCATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
34 33 0.87
35 5 0.13
ACGTcount: A:0.45, C:0.32, G:0.12, T:0.11
Consensus pattern (35 bp):
CGCATGCAGCCTCACATAAACAACAAATAACAACG
Left flanking sequence: Indices 478387 -- 478886
TCTACGATATTCATTGCACCATGATTGAAGGCCTACGCATCTTCTTTCGGGTATTTCTTATTGGT
TGACATAAATTATAGACACCGTGGGGACGTCATCTAGACAAAAAGGGAAACTATTTATGATAGAT
TACCATCAATCCCATCTTATGGTGTTACACCCATGGACTAAAGATACTAGTCTTCCTACATTGCA
TCTATTGGGTTGAGAGAGGATCTCCTTTCTCCTAAAAATCCTCCTTGTCCATGATACTTACTTGC
AATCAATTCATAGTCTTCCCAAGTAGCTTCTAGGTTGGACCAATGAATGAGCACTTGTGGTACCG
CTGCATTTCTGGAACGGCTACTGCCTACATAACTTGTCTTCCTCTTTTCAAGGAAGTCAGTATCA
GACCATATGTAGTTCTCGTCTCGAGGGTCTTACTTCCTTTTTCCCGGACCAAAGAAAAGAGATAA
TTTATTAGCCTTCTCACATGGACATAAAGACACGAGTTAATCATT
Right flanking sequence: Indices 478960 -- 479459
ACACTCATATATTTTTTTAGATAATATGGACATAAGATTCCCCTCTTACCCCTAACTAACGATTA
TGCTGCTCTCGTCCTGTTTTTCCATACTTCCGCGCAATAAAAATAAAAACTAGAAATAGGAACAA
ACCGAGACCGAGAGCGAGAGCGAGAGGGTGAATGCCAAATTGATCCAAAGGACTCTCCGCTAAAT
GCATCGCAGCGAAATTTGCCGCTAAATTCTCATTCGCTAGCTCAGCTATTCCGTACTTGAAGGCT
TCACTTTCAGTGCCATTTGCTACTAAATCCCGGAGCTGTGATCGAAGAAATCCTATATTAGCACT
CCCCCCATGTATTCGTTCGGCTGCAACTAGAATCTCTTGGTGATCCCTGCCGGGCATTAATTTGG
CCATTTCCTCGCGTATAGCCCCTTGATATTCTACGACCCTTTCATCGGTCGGGATGGCCGATTTA
CGGACGAAGAGGAAGAGGGAGTACCACTGTCCGTTAAGAATACTC
Found at i:479536 original size:36 final size:36
Alignment explanation
Indices: 479496--479571 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
479486 TTCACAGAAA
479496 AGGATGCTAATGGCGAGGGTTGATTGACAGAGGAAG
1 AGGATGCTAATGGCGAGGGTTGATTGACAGAGGAAG
*
479532 AGGATGCTAATGGCGATGGTTGATTGACAGAGGAAG
1 AGGATGCTAATGGCGAGGGTTGATTGACAGAGGAAG
479568 AGGA
1 AGGA
479572 CGAGGGAGTC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.32, C:0.08, G:0.41, T:0.20
Consensus pattern (36 bp):
AGGATGCTAATGGCGAGGGTTGATTGACAGAGGAAG
Left flanking sequence: Indices 478996 -- 479495
ATTCCCCTCTTACCCCTAACTAACGATTATGCTGCTCTCGTCCTGTTTTTCCATACTTCCGCGCA
ATAAAAATAAAAACTAGAAATAGGAACAAACCGAGACCGAGAGCGAGAGCGAGAGGGTGAATGCC
AAATTGATCCAAAGGACTCTCCGCTAAATGCATCGCAGCGAAATTTGCCGCTAAATTCTCATTCG
CTAGCTCAGCTATTCCGTACTTGAAGGCTTCACTTTCAGTGCCATTTGCTACTAAATCCCGGAGC
TGTGATCGAAGAAATCCTATATTAGCACTCCCCCCATGTATTCGTTCGGCTGCAACTAGAATCTC
TTGGTGATCCCTGCCGGGCATTAATTTGGCCATTTCCTCGCGTATAGCCCCTTGATATTCTACGA
CCCTTTCATCGGTCGGGATGGCCGATTTACGGACGAAGAGGAAGAGGGAGTACCACTGTCCGTTA
AGAATACTCCTTTCACGGAAGAAGGGGATGGCTGGTTCACAGAAA
Right flanking sequence: Indices 479572 -- 480071
CGAGGGAGTCCCAAAAGAAATGAATCCTTCTGAAGAAGAAGGACTATGAGAGTGTAGACTAGAAT
TGCAAGACAAAAAAGACGATGAACTGGTGCTACTGGCACTCCCTCCCGAAAGATCACCCATTTTA
TTTCTGATATCCAACATGAGAAGATCTTCTGGTCTAGAATTAGTATAGTAGTTTTTTGCATTTCT
TTATTTTTAGTGGAAAGGAAAGAAGAGATCGCGAACCGCGCCCACACAATCTCAATTTTACACAG
CAACACTGCTTGTCAAGTTAAGTAGCGACCTGCATACAGGGGACCCCCTCGTGCCCCACCCCAAG
GGCTGACTCTTCTTTCATTACATACGATTTTTGTTACTGATCAAATTTGATTAATGGATGTCTCA
GAAGACAGGCTTTCTCCGACAAGAAAGATGAGAGGAACCGTGGAGTTGGACCAATACGTTGGAAT
AGATAGCTCTGTTGCTTACTTTCAAGCTTTAGATAGCTCTGTTTG
Found at i:492452 original size:33 final size:33
Alignment explanation
Indices: 492404--492469 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
492394 CAATCGGATA
492404 CTTTCCACTGACCGAGCTACTTCTCCATCTCTG
1 CTTTCCACTGACCGAGCTACTTCTCCATCTCTG
* *
492437 CTTTCTACTGCCCGAGCTACTTCTCCATCTCTG
1 CTTTCCACTGACCGAGCTACTTCTCCATCTCTG
492470 AAGGAACTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.14, C:0.39, G:0.12, T:0.35
Consensus pattern (33 bp):
CTTTCCACTGACCGAGCTACTTCTCCATCTCTG
Left flanking sequence: Indices 491904 -- 492403
CCCTAATCCCTCTATCCCTTCCAGAACTCATCCAAGCAAGAAAACGGATGCGCTAGACGGCCGCT
AGAAAACATCTTGACCTTGCGGTTTGTGTTTCCTTTCATTCGCCTTTGTCTGGTAACTGCTTGCT
TTAGCTGTTCGGCTATCTAGTTCGCGCAGTCTCAGTTGGTTGATAGTCCAACATTCCATCCTTTG
ATTTCAGCGGAAAAAGAAGCTACTCCGCTTCGCTCTAGTTCGTAGGAAGATACGCACACACAGCA
CAGGGCTTTCTCTGTCTATCAACTAAGGTTAGAAATCGATTCTATAAGAAATGAGCACTCAGAAC
TCTATCTGGAAGATCGAGGATAAGCGATCAAGAAAAGTACTGGCTGGCTTTGCTTTGGTACGAGT
AGTTCCAAGGCTTTCTCTTCCTTCAAACGAGTGCCTCTACTTTAGGGATCGGAGGGATCTATCTC
TATTTATGGAAGTCTTCCCAAGGGTAGGAGACTATCAATCGGATA
Right flanking sequence: Indices 492470 -- 492969
AAGGAACTGGCTTGTCTGGCAGAGGGAACTCACTGGCTGAGAGAACTCTCTTTTCTTAGGAATTC
CTCCCAAGCAAGGATCAGATACTGCTATATATTTTAGTACTCGATTTTGAAATGTTGCCCTTGCT
TCTTGACTTTCCCCTGCTTGTTCAAATCATGATATCCTTGCCCTGTAGGCATCCCTCATACGATC
CGATCTACTTTGATTGTTTCATAGCATAGGTTTGTTTACAAGAAGTGGTAGCTTTCTGTGTTCCT
AGCTTGATGGCTTTTCTTACATTCCTATTTCCACATTCCTATATTTCCTTTATTTTCTGGTCTGG
CACTGGGCATAAGTTTTTGGTCGGCGGGAAGATACACCCAGCACATATGTTTTAGGTCAGAGTCC
CATCCTACATTGACTATTTCCACACTTTATAGAAAGCATTTGGTACATTGGGCAACCTCACACAA
GAGATGAAATGGAATTATTCTTGGCATATTTCCTATCATTTCACT
Found at i:497828 original size:23 final size:23
Alignment explanation
Indices: 497800--497845 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
497790 ATCTTTCTAT
497800 TATATATATAAATATGAGGAGTC
1 TATATATATAAATATGAGGAGTC
*
497823 TATATATATAAATATGATGAGTC
1 TATATATATAAATATGAGGAGTC
497846 ATGATTGGGT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.43, C:0.04, G:0.15, T:0.37
Consensus pattern (23 bp):
TATATATATAAATATGAGGAGTC
Left flanking sequence: Indices 497300 -- 497799
CATACACGACAATTCTATAATTCTTCGTCCTTTTTCTTGAGATAACGCGGAAAAGTATCTTTTTG
CTATGGCGTATGATTTGATACTTGCCAACACGGAATAGAGACTCGCACTTGGGAACTCTTAGGAG
TGGTTCTAATGTTAGTCAGATTTACTTCTTCCTAACGCGACGAGCAGATCAGAAGTATTTCAAGG
ATTGTAAGGGTGATACCTGGAGAGAGTGTAGCAACCCAACATAGATTTTTAGTACTCTATCTTAG
TATTAAGAGATGGAAGAGAAGGAGCAAGGGAGCCTAGGATTAGGTGGTGGAATTGGAAAGGGGAT
AAGCAAGTTATGTTTAAAGAGAAAATAATTAATGAGACGGAGTGGAAGTTAGGTGAGGATGCTAA
CTCAATGTAGAATGAGATGGCTCATTGTATCAGTATCACGTCAGTGGCAAAAGAAGTTTTAGGTG
AATCGAGAGACTGACCGAACAAAAATAAACCTTTCATCTTTCTAT
Right flanking sequence: Indices 497846 -- 498345
ATGATTGGGTCGACCCAATCATGACTATGGGACCTTTTCTCGATAAATGCTTTTTTTCTCGTTTA
GTACTTTACTTGTGTAAACTCTCTCTTTTTCTTTTCTTAGAGAAGCGCAGGATTCCCTTTCTTCC
CGGAACACTAATACAATCGCACTTTCTTCCTTGTCCCGCTAACCTATTATTTTTTTTAAGACAGA
ATTTTTAGCTTGAACTATCAATACTAGCCTAATTGATTGCTGGAATGGAACTTGATGTAACTGGC
AGGGACCGCTTATATAGAACGCTTGTAGGGAACCGGAAACCAACCTGCTCTGCTAGGGAAACGAC
CCCGGAGACCAGCCTGATAGACTATATCTATGAACTTCGAATAAGTCCCTACTTTCCTAATAAGG
GTACTGGCTCGCGAATGGCCCTACAAAATGACTCTCCTAAAATCAATGTCTGGAAGTCCTTTTAA
GATAGGTTAATATAAGATATGCTATGCTTAACACTTAGGCTTAGC
Found at i:498904 original size:27 final size:27
Alignment explanation
Indices: 498873--498924 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
498863 GAAATCTTCT
*
498873 GAAGATGTCTCTTCTAGTAAGAATAGA
1 GAAGATGTCTCATCTAGTAAGAATAGA
498900 GAAGATGTCTCATCTAGTAAGAATA
1 GAAGATGTCTCATCTAGTAAGAATA
498925 CACTTATTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.21, T:0.29
Consensus pattern (27 bp):
GAAGATGTCTCATCTAGTAAGAATAGA
Left flanking sequence: Indices 498373 -- 498872
TCGCCATAGATTGATTGTGCAGGCAGGTAATACTCATTTTAACTAGAAAGAGGATATTATACATG
AGTACTGGTTATAGTCACACTCCCAAACTCCCGAGAAGTCTTTTTTACTTAACTCTAGGACTTGC
TATAAGGATGGATTGCTTTTACCCTCTATCCCGATCTCGAATTGCGCTTGGCGCCCCCAGGTTGG
GCACAAACCCAGGTAGCCCCTAAACCCGGGCTCAGTCAAGAGCGGCATCTGAATCCCGCTGCAAT
CCCTCCAGCGCAGGTGGAGAAAAAGGGGCAAAATCTCAGTGGCCGACCTAATATGTTGGCTCCAC
TACCCGATTCCCCTTAATCCTCCAAGCCAATCAATGCCCCATACCCTTATCATGGTCAGTCTCAT
CTTTAGTGACTCCCGTGGTAAGGGGTCGAGGGAAGTGGTGTGGTGGGCCCCCTCACTTTTTTTGG
AAAGAAGACAGAGAAATTCTTTTGCATTTTTGGAAGAAATCTTCT
Right flanking sequence: Indices 498925 -- 499424
CACTTATTTGTGATCCTCCCTCTGTGACTGCTATTCCTATACTATCAGAACAGAAAGTAGACTAT
CCTAAGATTCGGGTTGCGATCCTCAAGGAAATAAGCTTGAATCTAAAAAAGACTATTAGAGTAGA
GTGGGGAAACTTATAGCTACCTGCTCTTTCATTGAAATGAACGAATTACTGCCAGTAATCTGAGA
ATTCATTGGTTCAAGGTGATGCCGCCTTTTGGCTTGGTTCAAGCCAGCTATCCAATTACCGTGAG
AGCTCTTGGACTGTTAGACCAAGTAAAGGTATTTGTCCCTTCCCCTTCTACTTACTTGAGAGTAG
GGAGCAAAACTAGATAAGTCTTAAGCGAAGACTGGGTTTAATGATACCCTCCCCATTCGTAACTG
CTTACAGCGGAACTTCTACTATTCATTCTATCCACTATCTCTCGACAAATGAATCTGAATCAAAG
TAGAGTAGAAGGCCAGACCTTAGGCGAATTTCGGTATCAAGAGAT
Found at i:515445 original size:5 final size:5
Alignment explanation
Indices: 515435--515470 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
515425 TAAGGCAATC
515435 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT A
1 ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT ATAGT A
515471 CTGCCAGCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.42, C:0.00, G:0.19, T:0.39
Consensus pattern (5 bp):
ATAGT
Left flanking sequence: Indices 514935 -- 515434
CTTCAAAAACCGACGCTATCGGGGCTTGTTGAGACCATAGATCGCTTTGCGTAAAGGACAGACAA
GAGAAGAAGTCAGAAGGGCAGGTTCTCTTTCATCCGTCTTTTCTAGGTGCGCATCTCTATCTACT
AAAAGTAGGGGTGGTTGCCATAGATAGATTGGGTCATTCGTAACCTGAGCAATAACCGATGCTAC
TACAGCAATAACGGAAATAACCGATGCTACAGCAGAAACTACAGCTATACGTGGCGGCCCCACAC
GCAGCTTTGTTTAACAAGCATCACCCTTCCTTTCTTTTCAAATGCTTCCTCAGTCAATCAGCAGC
TTATTCGATTCCTATTCTTATTAAACATCTGATATAGATGGTGGGAACAATGAAGCAGATTCTTC
ATCTGTAGGTTGCAATCCGTATGATTTCTTCTCGATCTCCTGCTTGTGTTTCACCTCGCACCTAA
GCATCACGTTCCTAGGGACAGAGACATCTGCGCTCTAAGGCAATC
Right flanking sequence: Indices 515471 -- 515970
CTGCCAGCATGGTTACATCGTTCTGCGGGCAAGCTTCAACTTAAAAGTCACCTGATTTGGGCCAA
AGGAGTAGGAACAGCTGCTGGGGAAGCACCATTACCATCTATGGTATGGGAGGTTGAATAGCTGC
ATAAGTAGTAGTAGGAGCATGGGCACTGGGAAAAGATGAAATCGATCCAGCTCTGGTAACAAAGC
AGTAGGCAAGGCCTCCTCTACTAAAATACGAATACGAATACGAATACCCTACTTCCGAGGAGAAA
GGACATCCCTCAATCACGGGACAATCCTCCACTCCAGGGCAAAGGTACTTCCAAAGCAGACAAGG
TTCATCTGCGCATGAAAGGAATGAAACAAATTCAATAGATTCAATAGGGTCATCCCCACCGAGAT
CGGTACCTATCTAGATCCCCAGCTTCGACAAGGCGTCCTCCTTCGCATTTTGCGACCATTCCCAC
GAGGACTACGATTCGGATTCTCTAATTTCATCCCCAATTACACCT
Done.