123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_008333
Parameters: 2 7 7 80 10 50 500
Length:  539368

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19175--19222	23	2.1	23	92	0	78	35	22	20	20	1.96
34069--34120	23	2.3	22	83	12	61	42	7	25	25	1.81
66698--66736	20	2.0	20	94	0	69	43	5	20	30	1.73
107315--107359	21	2.1	21	95	0	81	44	4	24	26	1.72
109036--109095	21	2.9	21	84	0	75	36	3	41	18	1.67
110424--110461	20	1.9	20	100	0	76	13	26	18	42	1.87
132218--132246	5	6.0	5	96	4	51	37	20	0	41	1.53
148708--148756	24	2.0	24	100	0	98	36	12	0	51	1.40
157136--157197	21	3.0	21	78	0	61	12	29	24	33	1.92
168684--168709	6	4.3	6	100	0	52	34	15	15	34	1.89
179103--179146	21	2.1	21	86	0	61	25	27	20	27	1.99
179828--179854	6	4.5	6	100	0	54	51	0	14	33	1.43
181490--181520	6	5.2	6	100	0	62	35	16	16	32	1.91
188331--188355	6	4.2	6	100	0	50	36	16	0	48	1.46
204462--204522	26	2.4	24	79	15	68	36	29	14	19	1.92
205124--205161	18	2.1	18	90	0	58	21	31	21	26	1.98
206660--206684	5	5.0	5	100	0	50	60	0	0	40	0.97
212181--212236	25	2.2	25	84	12	71	19	14	30	35	1.91
219437--219461	5	5.0	5	100	0	50	60	20	0	20	1.37
229001--229037	18	2.1	18	94	0	65	18	13	21	45	1.84
229956--229993	19	2.0	19	85	10	51	44	21	31	2	1.66
254078--254122	5	9.2	5	92	4	74	37	17	2	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254634--254670	5	7.4	5	100	0	74	59	0	18	21	1.38
271894--271927	15	2.3	15	89	0	50	32	11	11	44	1.77
273000--273043	22	2.0	22	100	0	88	36	4	27	31	1.77
292518--292554	20	1.9	19	89	10	58	21	29	16	32	1.95
292524--292561	20	1.9	20	88	0	58	23	28	15	31	1.96
298253--298333	41	2.0	41	97	0	153	30	4	18	45	1.70
316104--316131	11	2.5	11	100	0	56	71	0	21	7	1.09
329898--329939	10	4.2	10	84	0	57	33	21	0	45	1.52
329896--329941	15	3.1	15	83	0	56	32	19	0	47	1.50
335194--335223	6	5.2	6	92	8	53	33	50	0	16	1.46
343991--344032	17	2.4	18	88	4	68	47	4	21	26	1.70
349721--349756	5	7.2	5	96	0	63	41	2	19	36	1.66
351584--351636	18	2.9	18	80	5	63	41	13	22	22	1.88
352456--352496	5	8.2	5	100	0	82	41	0	19	39	1.52
359885--359909	5	5.0	5	100	0	50	20	40	0	40	1.52
363594--363637	6	7.3	6	100	0	88	50	0	15	34	1.45
364665--364737	7	10.1	7	95	4	128	42	16	0	41	1.48
367561--367585	5	5.0	5	100	0	50	40	0	20	40	1.52
391307--391341	18	1.9	18	100	0	70	28	25	0	45	1.54
396214--396249	5	7.2	5	100	0	72	58	0	22	19	1.40
398908--398945	18	2.1	18	90	0	58	26	21	31	21	1.98
419532--419593	29	2.1	29	85	5	81	37	3	37	22	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440606--440654	5	10.0	5	97	2	91	20	40	0	38	1.53
461023--461061	20	2.0	20	94	0	69	30	20	5	43	1.73
476273--476303	15	2.1	15	100	0	62	48	19	19	12	1.81
476545--476576	5	6.4	5	100	0	64	40	18	0	40	1.51
478887--478959	34	2.1	35	97	2	139	45	31	12	10	1.76
479496--479571	36	2.1	36	97	0	143	31	7	40	19	1.80
492404--492469	33	2.0	33	93	0	114	13	39	12	34	1.82
497800--497845	23	2.0	23	95	0	83	43	4	15	36	1.66
498873--498924	27	1.9	27	96	0	95	38	11	21	28	1.88
515435--515470	5	7.2	5	100	0	72	41	0	19	38	1.52

Tables:   1

The End!