Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_053538
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 186911
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Found at i:6330 original size:13 final size:14
Alignment explanation
Indices: 6303--6333 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
6293 TCTATTATCC
*
6303 AAAAACTGACAAAA
1 AAAAACAGACAAAA
6317 AAAAACAGACAAAA
1 AAAAACAGACAAAA
6331 AAA
1 AAA
6334 GGGCAAAAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.77, C:0.13, G:0.06, T:0.03
Consensus pattern (14 bp):
AAAAACAGACAAAA
Left flanking sequence: Indices 5803 -- 6302
ATTTATGACCTGGTTGATATATACCATCAATAGGCATGGAGCGAGCAACGTACGTTCATGCGCTT
CACCATTTGCAGAGCTCAGGTGCCAATGGTTAATTGCTGGTTGACAAGGACCGAAAGAGTCTCCG
ATTCGCCAGTACAGAACCTCATCTTAAATACAAGAAAACCGGCTTGCTCCATACTTTTGGGTTAC
CCCCCCCGGGGAGGGGAAATGAAACCCCCTCAACAGAGCTTCTTGCACATGCTAAGGTCTCCGTG
TTCGTTGCCGAACAAGAATGAGTGCAACGCCTTTGCACAGAAATGGACTTGTGCTTTTTATCGTG
CGGGATCTAGACCGGTCGCCCGATGAAAATAATAAACTTAATTCGCCAAAAACAGACCGGGTCAA
CAGATTTTTAGTATCAAATGCTAATTCTTTGTTTTAGGCCATTATTGTACTGGCATTTTTAATAA
TAATTAGCGCATCCTGATTTCATTGTGAATAACTATCTATTATCC
Right flanking sequence: Indices 6334 -- 6833
GGGCAAAAACTTGCCTAACAAGCGGAGGCCTCCGGCCCGTAGGGCAGCGCTACGGGCCTTTTCGC
AGCATATATATTTTTCGCAGCAAAAATATATATATATTTTTTTCGGGATTTCTAGGAAAAAGAGT
AAACGTATATGTTACAAGTTTTAGCTCCATTTTATTCCAATTTAAGTGGTCTTATTTTGCTTCCT
TTGCTAGGAAGCCTTATTATTTTGGTGATCCCGAATTCAAGAGTACGTCTGATACGAGGTATCAC
AATTTGGACCTCTTTGATCACTTTTTTATATTCTATTTTTTTTTGGATACGCTTTGAGAATGATA
CAGCAAAATTTCAGTTTGTGGAAACTATTCGATGGCTTCCGTATTCAAATATCAATTTTTATATA
GGTATAGATGGTATCTCTTTATTCTTTGTGATCTTGACCACGTTTTTAACTCCTATTTGCATTCT
TGTTGGCTTTTATAGCGTCAAAAGTTATAAAAAAGAATATATGAT
Found at i:6429 original size:20 final size:18
Alignment explanation
Indices: 6392--6427 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
6382 GCTACGGGCC
*
6392 TTTTCGCAGCATATATAT
1 TTTTCGCAGCAAATATAT
*
6410 TTTTCGCAGCAAAAATAT
1 TTTTCGCAGCAAATATAT
6428 ATATATATTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.17, G:0.11, T:0.39
Consensus pattern (18 bp):
TTTTCGCAGCAAATATAT
Left flanking sequence: Indices 5892 -- 6391
AATGGTTAATTGCTGGTTGACAAGGACCGAAAGAGTCTCCGATTCGCCAGTACAGAACCTCATCT
TAAATACAAGAAAACCGGCTTGCTCCATACTTTTGGGTTACCCCCCCCGGGGAGGGGAAATGAAA
CCCCCTCAACAGAGCTTCTTGCACATGCTAAGGTCTCCGTGTTCGTTGCCGAACAAGAATGAGTG
CAACGCCTTTGCACAGAAATGGACTTGTGCTTTTTATCGTGCGGGATCTAGACCGGTCGCCCGAT
GAAAATAATAAACTTAATTCGCCAAAAACAGACCGGGTCAACAGATTTTTAGTATCAAATGCTAA
TTCTTTGTTTTAGGCCATTATTGTACTGGCATTTTTAATAATAATTAGCGCATCCTGATTTCATT
GTGAATAACTATCTATTATCCAAAAACTGACAAAAAAAAACAGACAAAAAAAGGGCAAAAACTTG
CCTAACAAGCGGAGGCCTCCGGCCCGTAGGGCAGCGCTACGGGCC
Right flanking sequence: Indices 6428 -- 6927
ATATATATTTTTTTCGGGATTTCTAGGAAAAAGAGTAAACGTATATGTTACAAGTTTTAGCTCCA
TTTTATTCCAATTTAAGTGGTCTTATTTTGCTTCCTTTGCTAGGAAGCCTTATTATTTTGGTGAT
CCCGAATTCAAGAGTACGTCTGATACGAGGTATCACAATTTGGACCTCTTTGATCACTTTTTTAT
ATTCTATTTTTTTTTGGATACGCTTTGAGAATGATACAGCAAAATTTCAGTTTGTGGAAACTATT
CGATGGCTTCCGTATTCAAATATCAATTTTTATATAGGTATAGATGGTATCTCTTTATTCTTTGT
GATCTTGACCACGTTTTTAACTCCTATTTGCATTCTTGTTGGCTTTTATAGCGTCAAAAGTTATA
AAAAAGAATATATGATAGCATTTTTCATTTGTGAATCTTTCCTAATTGCTGTGTTTTGCTCACTC
GATCTTTTAATATTTTACGTTTTTTTTGAAAGCGTGTTAATTCCC
Found at i:14635 original size:60 final size:60
Alignment explanation
Indices: 14546--14725 Score: 283
Period size: 60 Copynumber: 3.0 Consensus size: 60
14536 GAAAAGCGAT
*
14546 TATATAAACGAAACTTCAGTTTCTGTATATGTATATGCTATTTGAAGTTATATATATATA
1 TATATATACGAAACTTCAGTTTCTGTATATGTATATGCTATTTGAAGTTATATATATATA
*
14606 TATATATACGAAACTTCAGTTTCTGTATATGTATATTCTATTTGAAG-T-TATATATATA
1 TATATATACGAAACTTCAGTTTCTGTATATGTATATGCTATTTGAAGTTATATATATATA
* * * * *
14664 TATATATACGAAACTTCAGTTTCTGTATATGTATAGGCTATTTTAAATTATTTATATGTA
1 TATATATACGAAACTTCAGTTTCTGTATATGTATATGCTATTTGAAGTTATATATATATA
14724 TA
1 TA
14726 CGAAACTGAA
Statistics
Matches: 110, Mismatches: 8, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
58 53 0.48
59 2 0.02
60 55 0.50
ACGTcount: A:0.35, C:0.08, G:0.11, T:0.46
Consensus pattern (60 bp):
TATATATACGAAACTTCAGTTTCTGTATATGTATATGCTATTTGAAGTTATATATATATA
Left flanking sequence: Indices 14046 -- 14545
CCATCTTGTTATTGATGGCCTGCCCCTAGTCGAGTCCTCTATCAAATAATACAACACTTAAAGCC
GGCAGCATGACATTCGCGGCTGCTGGATGATCGCCGATGTGAGCTGTCACATAACCCCGATCTAC
AAAGTGTTCTACAAATTGCTTTATCATTGAAAACCTCAAAAGAACCGCAAAGGCTATAATTAAGC
CTAGAACGTATCAACTGCAAACTGCGCAGACTATTTATAAATAAATGAAAGGCTCAGAAAAGTCC
AGTACGCGCTGTCGTTCCGCGTACGAAAAGAAAAACATAAACGTGTACAATACGCGGGCCGGCCG
GGCACTCCGAAGAAATGAATAACTTTCAAAAAACATTTTAGGGTAATCACATAGGTATAATAAAC
GCGGATTAGCGCATAAAAGCCTCTGACTGCTGCAACTAGATAGTAACTTCAGCGGCTTCTTTCCA
TAAATTCTTTCAACTTGCACCTCGACAACGAATGTGAAAAGCGAT
Right flanking sequence: Indices 14726 -- 15225
CGAAACTGAAGTTTCGTGTATTCTATATGCTATAACAAGTCCTATATGCTATGCGTTATGCCGCA
CTCTGCGCCACGCCCCGGGGCCGTCTTAGGCTTCTGAGAACCAATAACACGTAAACTATGTAAAA
CTAAAGCAAATCAATATACAAAAAACACGAATTAGAATTTCCTCCAGAATTGTTTTTAATACAAA
ATGCATTATATTTCGTCGTGTGTTGAACTTTATCAAACCCAAGAAAACGCAAAGCAAAAAAAAAT
ATATATATTTTTTGTTCGTTTTATTCTATTCGACCCTTTCTCTTTCAGCCTTCATTCGCGATGCG
AATAAAGCGGGAGAGAAGAAAGAAGCAAGCTTCTCCGGAATTCACTCTTTTTTTGCGAAGTGGTT
AGTAATGTACTGCATTCTTAGCTCAGTTGGATAGAGCAACAACCTTCTAAGTTGAAGGTCACAGG
TTCAAATCCTGTAGAATGCGTAAAGTGCACAAGGAATAATATATA
Found at i:14665 original size:58 final size:58
Alignment explanation
Indices: 14546--14758 Score: 283
Period size: 58 Copynumber: 3.7 Consensus size: 58
14536 GAAAAGCGAT
*
14546 TATATAAACGAAACTTCAGTTTCTGTATATGTATATGCTATTTGAAGTTATATATATATA
1 TATATATACGAAACTTCAGTTTCTGTATATGTATATGCTATTTGAAG-T-TATATATATA
*
14606 TATATATACGAAACTTCAGTTTCTGTATATGTATATTCTATTTGAAGTTATATATATA
1 TATATATACGAAACTTCAGTTTCTGTATATGTATATGCTATTTGAAGTTATATATATA
* * *
14664 TATATATACGAAACTTCAGTTTCTGTATATGTATAGGCTATTTTAA---AT-TATTTA
1 TATATATACGAAACTTCAGTTTCTGTATATGTATATGCTATTTGAAGTTATATATATA
* ** *
14718 TATGTATACGAAACTGAAGTTTCGTGTAT-TCTATATGCTAT
1 TATATATACGAAACTTCAGTTTC-TGTATATGTATATGCTAT
14759 AACAAGTCCT
Statistics
Matches: 141, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
54 35 0.25
55 7 0.05
58 53 0.38
59 1 0.01
60 45 0.32
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.45
Consensus pattern (58 bp):
TATATATACGAAACTTCAGTTTCTGTATATGTATATGCTATTTGAAGTTATATATATA
Left flanking sequence: Indices 14046 -- 14545
CCATCTTGTTATTGATGGCCTGCCCCTAGTCGAGTCCTCTATCAAATAATACAACACTTAAAGCC
GGCAGCATGACATTCGCGGCTGCTGGATGATCGCCGATGTGAGCTGTCACATAACCCCGATCTAC
AAAGTGTTCTACAAATTGCTTTATCATTGAAAACCTCAAAAGAACCGCAAAGGCTATAATTAAGC
CTAGAACGTATCAACTGCAAACTGCGCAGACTATTTATAAATAAATGAAAGGCTCAGAAAAGTCC
AGTACGCGCTGTCGTTCCGCGTACGAAAAGAAAAACATAAACGTGTACAATACGCGGGCCGGCCG
GGCACTCCGAAGAAATGAATAACTTTCAAAAAACATTTTAGGGTAATCACATAGGTATAATAAAC
GCGGATTAGCGCATAAAAGCCTCTGACTGCTGCAACTAGATAGTAACTTCAGCGGCTTCTTTCCA
TAAATTCTTTCAACTTGCACCTCGACAACGAATGTGAAAAGCGAT
Right flanking sequence: Indices 14759 -- 15258
AACAAGTCCTATATGCTATGCGTTATGCCGCACTCTGCGCCACGCCCCGGGGCCGTCTTAGGCTT
CTGAGAACCAATAACACGTAAACTATGTAAAACTAAAGCAAATCAATATACAAAAAACACGAATT
AGAATTTCCTCCAGAATTGTTTTTAATACAAAATGCATTATATTTCGTCGTGTGTTGAACTTTAT
CAAACCCAAGAAAACGCAAAGCAAAAAAAAATATATATATTTTTTGTTCGTTTTATTCTATTCGA
CCCTTTCTCTTTCAGCCTTCATTCGCGATGCGAATAAAGCGGGAGAGAAGAAAGAAGCAAGCTTC
TCCGGAATTCACTCTTTTTTTGCGAAGTGGTTAGTAATGTACTGCATTCTTAGCTCAGTTGGATA
GAGCAACAACCTTCTAAGTTGAAGGTCACAGGTTCAAATCCTGTAGAATGCGTAAAGTGCACAAG
GAATAATATATACCAACGGTAATCCTTCTACTTGTTTAATTAGTC
Found at i:14753 original size:118 final size:117
Alignment explanation
Indices: 14546--14758 Score: 287
Period size: 118 Copynumber: 1.9 Consensus size: 117
14536 GAAAAGCGAT
*
14546 TATATAAACGAAACTTCAGTTTCTGTATATGTATATGCTATTTGAAGTTATATATATATATATAT
1 TATATAAACGAAACTTCAGTTTCTGTATATGTATAGGCTATTTGAA--TATATATATATATATAT
**
14611 ATACGAAACTTCAGTTTCTGTATATG-TATATTCTATTTGAAGTTATATATATA
64 ATACGAAACTGAAGTTTCTGTATATGCTATATTCTATTTGAAGTTATATATATA
* * *
14664 TATATATACGAAACTTCAGTTTCTGTATATGTATAGGCTATTTTAA-AT-TAT-T-TATATGTAT
1 TATATAAACGAAACTTCAGTTTCTGTATATGTATAGGCTATTTGAATATATATATATATATATAT
*
14725 ACGAAACTGAAGTTTCGTGTAT-T-CTATATGCTAT
66 ACGAAACTGAAGTTTC-TGTATATGCTATATTCTAT
14759 AACAAGTCCT
Statistics
Matches: 86, Mismatches: 7, Indels: 10
0.83 0.07 0.10
Matches are distributed among these distances:
112 32 0.37
113 6 0.07
114 3 0.03
115 2 0.02
118 43 0.50
ACGTcount: A:0.34, C:0.09, G:0.12, T:0.45
Consensus pattern (117 bp):
TATATAAACGAAACTTCAGTTTCTGTATATGTATAGGCTATTTGAATATATATATATATATATAT
ACGAAACTGAAGTTTCTGTATATGCTATATTCTATTTGAAGTTATATATATA
Left flanking sequence: Indices 14046 -- 14545
CCATCTTGTTATTGATGGCCTGCCCCTAGTCGAGTCCTCTATCAAATAATACAACACTTAAAGCC
GGCAGCATGACATTCGCGGCTGCTGGATGATCGCCGATGTGAGCTGTCACATAACCCCGATCTAC
AAAGTGTTCTACAAATTGCTTTATCATTGAAAACCTCAAAAGAACCGCAAAGGCTATAATTAAGC
CTAGAACGTATCAACTGCAAACTGCGCAGACTATTTATAAATAAATGAAAGGCTCAGAAAAGTCC
AGTACGCGCTGTCGTTCCGCGTACGAAAAGAAAAACATAAACGTGTACAATACGCGGGCCGGCCG
GGCACTCCGAAGAAATGAATAACTTTCAAAAAACATTTTAGGGTAATCACATAGGTATAATAAAC
GCGGATTAGCGCATAAAAGCCTCTGACTGCTGCAACTAGATAGTAACTTCAGCGGCTTCTTTCCA
TAAATTCTTTCAACTTGCACCTCGACAACGAATGTGAAAAGCGAT
Right flanking sequence: Indices 14759 -- 15258
AACAAGTCCTATATGCTATGCGTTATGCCGCACTCTGCGCCACGCCCCGGGGCCGTCTTAGGCTT
CTGAGAACCAATAACACGTAAACTATGTAAAACTAAAGCAAATCAATATACAAAAAACACGAATT
AGAATTTCCTCCAGAATTGTTTTTAATACAAAATGCATTATATTTCGTCGTGTGTTGAACTTTAT
CAAACCCAAGAAAACGCAAAGCAAAAAAAAATATATATATTTTTTGTTCGTTTTATTCTATTCGA
CCCTTTCTCTTTCAGCCTTCATTCGCGATGCGAATAAAGCGGGAGAGAAGAAAGAAGCAAGCTTC
TCCGGAATTCACTCTTTTTTTGCGAAGTGGTTAGTAATGTACTGCATTCTTAGCTCAGTTGGATA
GAGCAACAACCTTCTAAGTTGAAGGTCACAGGTTCAAATCCTGTAGAATGCGTAAAGTGCACAAG
GAATAATATATACCAACGGTAATCCTTCTACTTGTTTAATTAGTC
Found at i:18806 original size:14 final size:14
Alignment explanation
Indices: 18787--18817 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
18777 AAAAAAAGAA
*
18787 AAAAAACTGACAGG
1 AAAAAACTGACAAG
18801 AAAAAACTGACAAG
1 AAAAAACTGACAAG
18815 AAA
1 AAA
18818 CTCACAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.65, C:0.13, G:0.16, T:0.06
Consensus pattern (14 bp):
AAAAAACTGACAAG
Left flanking sequence: Indices 18287 -- 18786
GTATTAGGACTAGATATTAATGTTTAATCACTCGGCCGGAGCCAGTCTCTTGCTCCAGGGGAGGC
GCTCAGGAGATCCAAGGGCTGACTGGTCCGCCTCACGGCGGACGGAGCCATACCCTATGCCAATT
TATGTATATATATCTTAATTTATGGCGGAAATAGCTTAATGGTAGAGTATAGCCTTGCCAAGGCT
AAGGTTGAGGGTTCAAGTCCCTTTTTCCGCTTGGAGGGTTATTTACCGGTCTTTCGTTTCACAGG
GACGAAATGTTTGTGATCATCGGCGAAGCAAGCAGAAGGCGCGATAAGTTAGTGGCTTCTCTTCC
CTTTGTTTGTCTTTTCTATTTTGTGTTTTTTGTCAGTTTTTTTCCATTTATATGTCGGGGATAGA
GCTAAAGCCGAGACAAAAGGCCCGTAGCGCGGGGGACTGTCAGACAAAAAATAGAAAAAAACTGA
CAAAAAAAGGGCCCCAGGGGGGTGGACTGTCAGATAAAAAAAGAA
Right flanking sequence: Indices 18818 -- 19317
CTCACAAAAAAAGAAAAAAACTGACAAAAAAAGGGCTTTTGGACCCCCAAAACTTTCTGGGAGAG
GGCCGGAGGAGGCTATATCCCCGATAGGGTATAGGGCTGAAGCTCTCCCGGGCCGTAGGGATATA
TATATATTTTTTTGCTTTGCGTTTTCTGGATGGTTCTATAAGCGTTATATGGAGGCGCATTCCAT
TTTGTTTTCTCGTTGCGCAGCGAAAAAACAAAACTTTTTTGGACGTCGAAGACAGGGGTTCAAAT
CCCGTAAGGGGCCAAGCACCTACCCTTACTACGGTTGCTCTAAAAGCAGAGCGAAAAGGCTTTCT
GGTGCACGGGTTTTTACAAAAAAAACAGACTTTACAATGATAAATAAGAATACTATATCTGCAAA
AAGACAACTTGTTTTATGAACCGTCTCTAAGTTTAGAGTCCCTATTAGGCTTTTTTGAAATCGAT
GGTAGCTTACAGATTTTATTAAAAAAATCTGCTCGTATGACTTTT
Found at i:18846 original size:11 final size:11
Alignment explanation
Indices: 18787--18848 Score: 56
Period size: 11 Copynumber: 5.5 Consensus size: 11
18777 AAAAAAAGAA
18787 AAAAAACTGAC
1 AAAAAACTGAC
18798 AGGAAAAAACTGAC
1 ---AAAAAACTGAC
* *
18812 AAGAAACTCAC
1 AAAAAACTGAC
*
18823 AAAAAA-AGA-
1 AAAAAACTGAC
18832 AAAAAACTGAC
1 AAAAAACTGAC
18843 AAAAAA
1 AAAAAA
18849 AGGGCTTTTG
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
9 6 0.15
10 3 0.08
11 20 0.50
14 11 0.28
ACGTcount: A:0.68, C:0.15, G:0.11, T:0.06
Consensus pattern (11 bp):
AAAAAACTGAC
Left flanking sequence: Indices 18287 -- 18786
GTATTAGGACTAGATATTAATGTTTAATCACTCGGCCGGAGCCAGTCTCTTGCTCCAGGGGAGGC
GCTCAGGAGATCCAAGGGCTGACTGGTCCGCCTCACGGCGGACGGAGCCATACCCTATGCCAATT
TATGTATATATATCTTAATTTATGGCGGAAATAGCTTAATGGTAGAGTATAGCCTTGCCAAGGCT
AAGGTTGAGGGTTCAAGTCCCTTTTTCCGCTTGGAGGGTTATTTACCGGTCTTTCGTTTCACAGG
GACGAAATGTTTGTGATCATCGGCGAAGCAAGCAGAAGGCGCGATAAGTTAGTGGCTTCTCTTCC
CTTTGTTTGTCTTTTCTATTTTGTGTTTTTTGTCAGTTTTTTTCCATTTATATGTCGGGGATAGA
GCTAAAGCCGAGACAAAAGGCCCGTAGCGCGGGGGACTGTCAGACAAAAAATAGAAAAAAACTGA
CAAAAAAAGGGCCCCAGGGGGGTGGACTGTCAGATAAAAAAAGAA
Right flanking sequence: Indices 18849 -- 19348
AGGGCTTTTGGACCCCCAAAACTTTCTGGGAGAGGGCCGGAGGAGGCTATATCCCCGATAGGGTA
TAGGGCTGAAGCTCTCCCGGGCCGTAGGGATATATATATATTTTTTTGCTTTGCGTTTTCTGGAT
GGTTCTATAAGCGTTATATGGAGGCGCATTCCATTTTGTTTTCTCGTTGCGCAGCGAAAAAACAA
AACTTTTTTGGACGTCGAAGACAGGGGTTCAAATCCCGTAAGGGGCCAAGCACCTACCCTTACTA
CGGTTGCTCTAAAAGCAGAGCGAAAAGGCTTTCTGGTGCACGGGTTTTTACAAAAAAAACAGACT
TTACAATGATAAATAAGAATACTATATCTGCAAAAAGACAACTTGTTTTATGAACCGTCTCTAAG
TTTAGAGTCCCTATTAGGCTTTTTTGAAATCGATGGTAGCTTACAGATTTTATTAAAAAAATCTG
CTCGTATGACTTTTGGTTATTACATTCGGCCAGTTGCCGTTTTTT
Found at i:29242 original size:13 final size:13
Alignment explanation
Indices: 29224--29254 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
29214 GGTAATGTTT
29224 TTTCTCTGTTATA
1 TTTCTCTGTTATA
29237 TTTCTCTGTTATA
1 TTTCTCTGTTATA
29250 TTTCT
1 TTTCT
29255 AGCATTTTTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.13, C:0.16, G:0.06, T:0.65
Consensus pattern (13 bp):
TTTCTCTGTTATA
Left flanking sequence: Indices 28724 -- 29223
GTCGAATAGAAGAAGTCCCTCTTGGACCAGTAAAAATTACCGCAGGAACGGAAAATCTACAAAAA
CCCTCCATATCCAAGGAAGATTTTGCCAATTGCCTGGGGGGCGGATACCGTGTTCGGCGCAAGCT
ACGGGCTTGCGCATTTAGTTATCAAAGCCACTTTGGAGGCGATGAAAAGACCATCTAATTCCAGA
GCTTTCTTGGCGCTTGCAGGCGTCGGGTATCTTGCGCTATGAAGATGATTGATCAACATTGAAAT
GTTGGCGAAGGTCCAGAACAACCTGTAAAAACCGACCCCGAAGGCGGGGCGCGGGGTGAGTTCAT
CTCGTAGCGAGTGCTACAAGCAACTGGACTATGACGAGGGTTATTGCGGTGGCCTCAGCGCTAAT
TCCCCCGCAGAGTTGTGAGACTTGTGGAAATCCTGGTGGGATGCTTTAATGAATCCAACATCCAT
GGATCCACAAAGGGCTTTATATATTGCCAATTATTGGTAATGTTT
Right flanking sequence: Indices 29255 -- 29754
AGCATTTTTCAAAAATTGGTACTAATCCATTTTCTGGAAAAAATGCAAACCTTAACCATTGTAAA
ACAGAAACCTTGTATTAATCAATTAATACTGTGGTTTCTTAGGACTTTCCGTAAATTGTCCTTTC
AGCATAAAATAATAGCTATTATTATTATTTATAGCGATTTTTTTCTGTTTAGTATTTTTGCTAGA
ATTCTTAAGCACATGACTTTTTAGCTTAGTCGTTTTTTCATTTTTTCGGGTGCTGGTTTTGAGAC
CTTAGGTCTTAGTTTACCAGATCACAAAAGAAGGGGGGGCTTCTTTTTATCCGTTCATTACTGTA
TCCTCGACCGGGGACACCCGGAATTGTGGGCCTGGTGTAAGGCCTGAGGACGAAGGAAAGACAAA
GTCTAGACCCGCGGCTAGGTTCGAATCCTAACAGTTCCTATTACGCGGGATAAGGGCCACCGGCG
ACCCAAAGGCCACGATACTATAGGCACGGAGTGCGCGACCGCCCA
Found at i:44516 original size:76 final size:76
Alignment explanation
Indices: 44429--44581 Score: 254
Period size: 76 Copynumber: 2.0 Consensus size: 76
44419 CCTTTCTTTT
* *
44429 TTTTCTATTTTTTTCAATAAAAATTATTATTTCATA-TTGTATTATCGTACTTTAATACTTCATA
1 TTTTCTATTTTTTTCAATAAAAATTATTATTTCATACTT-TATTATCGTAATTTAATACCTCATA
44493 TACGATGCATCA
65 TACGATGCATCA
*
44505 TTTTCTATTTTTTTCAATAAAAATTATTATTTTATACTTTATTATCGTAATTTAATACCTCATAT
1 TTTTCTATTTTTTTCAATAAAAATTATTATTTCATACTTTATTATCGTAATTTAATACCTCATAT
*
44570 ATGATGCATCA
66 ACGATGCATCA
44581 T
1 T
44582 CAAACCGTTT
Statistics
Matches: 72, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
76 70 0.97
77 2 0.03
ACGTcount: A:0.32, C:0.12, G:0.05, T:0.51
Consensus pattern (76 bp):
TTTTCTATTTTTTTCAATAAAAATTATTATTTCATACTTTATTATCGTAATTTAATACCTCATAT
ACGATGCATCA
Left flanking sequence: Indices 43929 -- 44428
TCAATGATAAGAAATATATAAGGCTTTCACTTTCATATTGGCCTGAAGAACGAAAATGCTAGTCG
CTATACAGCGAGTAAGCAAATACGCTTCGCGTATCCCGAGTTCGAAGGCCGACAGTGTAACGTGT
CATTTCATAAGGGCAGGAGTAACCGTCCTGGCATCTGGCAAGTGGATGGATCGAACCGCCGGTCG
AGCCCTCAGAGATCGGGAATGATTTCCTCTGACCCGGGTCCAGAGTGAAAAGATAATAAAAATAA
AATAGATATCGGCCATCCTGTCCCTGTGAATAATGGAGACGCTACGCTTCTCAAGTACTAGGTTC
CCGCCGCCAGCACCACGTCTACAAAAGAACGGCGGCCGACGCATCGCGGAAGGCGAAGGTATTGT
TTCCCGTCTGTCCGTCGTAGACGGCTAATTGTCGTAGACGCTTAGCCGTCTACGACAATTAGCTT
TTTGCCCATTTCCCTATCTCTAGCTACAGCGTTGTCCTTTCTTTT
Right flanking sequence: Indices 44582 -- 45081
CAAACCGTTTTAGTTATAAAAATATTGAAAAATGCGTTTCAAAATTTTGAAACTACATGAAAATT
TGTTTAAAAAGATCCAATTCTACTAATGGTTTCAAATTGACTAAATTAGTAATATCCATCAATAA
AGCCCAAAATTATGCAGGCACAGGTAATGAAAACGAAGTGTAATGTCTTTTACGGAATAATTCAA
AATAGAACTACCCGAGTAGTGATACCAATTTGAAAAAGAAACTATAGACAGATCCCAGGGATATT
TTATAAATATAGTTCGAGAGGATTTGCTATAGGTGTAACCTCGGATATCTCGCCTGTGTTACTGG
TAAAGGCGACGGATTTCTCTCTATTTCTTTCTTTTGGAAATACTGAGACCGTATTTTCATGGCGG
CTGCGGTCGACTTTTTAGAATTTGCCGCGGCTTCCAATAATTCCTTTTTAGAGGATTCATTCCCC
TGGGACGGTTTAGTTCTTTGTAACAGGAGGGCCGCGCCCCCAATT
Found at i:44601 original size:76 final size:75
Alignment explanation
Indices: 44435--44604 Score: 182
Period size: 76 Copynumber: 2.2 Consensus size: 75
44425 TTTTTTTTCT
* * *
44435 ATTTTTTTCAATAAAAATTATTATTTCATATTGTATTATCGTACTTTAATACTTCATATACGATG
1 ATTTTGTT-AATAAAAATTATTATTTCATATTGTATTATCGTAATTTAATACCTCATATACGATG
*** *
44500 CATCATTTTCT
65 CATCATAAACC
* * *
44511 ATTTTTTTCAATAAAAATTATTATTTTATACTT-TATTATCGTAATTTAATACCTCATATATGAT
1 ATTTTGTT-AATAAAAATTATTATTTCATA-TTGTATTATCGTAATTTAATACCTCATATACGAT
44575 GCATCATCAAACC
64 GCATCAT-AAACC
*
44588 GTTTTAGTT-ATAAAAAT
1 ATTTT-GTTAATAAAAAT
44605 ATTGAAAAAT
Statistics
Matches: 81, Mismatches: 10, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
76 72 0.89
77 7 0.09
78 2 0.02
ACGTcount: A:0.35, C:0.12, G:0.05, T:0.48
Consensus pattern (75 bp):
ATTTTGTTAATAAAAATTATTATTTCATATTGTATTATCGTAATTTAATACCTCATATACGATGC
ATCATAAACC
Left flanking sequence: Indices 43935 -- 44434
ATAAGAAATATATAAGGCTTTCACTTTCATATTGGCCTGAAGAACGAAAATGCTAGTCGCTATAC
AGCGAGTAAGCAAATACGCTTCGCGTATCCCGAGTTCGAAGGCCGACAGTGTAACGTGTCATTTC
ATAAGGGCAGGAGTAACCGTCCTGGCATCTGGCAAGTGGATGGATCGAACCGCCGGTCGAGCCCT
CAGAGATCGGGAATGATTTCCTCTGACCCGGGTCCAGAGTGAAAAGATAATAAAAATAAAATAGA
TATCGGCCATCCTGTCCCTGTGAATAATGGAGACGCTACGCTTCTCAAGTACTAGGTTCCCGCCG
CCAGCACCACGTCTACAAAAGAACGGCGGCCGACGCATCGCGGAAGGCGAAGGTATTGTTTCCCG
TCTGTCCGTCGTAGACGGCTAATTGTCGTAGACGCTTAGCCGTCTACGACAATTAGCTTTTTGCC
CATTTCCCTATCTCTAGCTACAGCGTTGTCCTTTCTTTTTTTTCT
Right flanking sequence: Indices 44605 -- 45104
ATTGAAAAATGCGTTTCAAAATTTTGAAACTACATGAAAATTTGTTTAAAAAGATCCAATTCTAC
TAATGGTTTCAAATTGACTAAATTAGTAATATCCATCAATAAAGCCCAAAATTATGCAGGCACAG
GTAATGAAAACGAAGTGTAATGTCTTTTACGGAATAATTCAAAATAGAACTACCCGAGTAGTGAT
ACCAATTTGAAAAAGAAACTATAGACAGATCCCAGGGATATTTTATAAATATAGTTCGAGAGGAT
TTGCTATAGGTGTAACCTCGGATATCTCGCCTGTGTTACTGGTAAAGGCGACGGATTTCTCTCTA
TTTCTTTCTTTTGGAAATACTGAGACCGTATTTTCATGGCGGCTGCGGTCGACTTTTTAGAATTT
GCCGCGGCTTCCAATAATTCCTTTTTAGAGGATTCATTCCCCTGGGACGGTTTAGTTCTTTGTAA
CAGGAGGGCCGCGCCCCCAATTTGATATCAACATTATCTTTGAAA
Found at i:49220 original size:26 final size:26
Alignment explanation
Indices: 49166--49220 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
49156 TTATGACAGT
* * *
49166 CCCCCTGGGGCCCTGTCGGACAGTCC
1 CCCCCAGGGGCCCTGTCAGACAGGCC
* *
49192 CCCCCAGGGGCCTTGTCAGACAGGGC
1 CCCCCAGGGGCCCTGTCAGACAGGCC
49218 CCC
1 CCC
49221 GCCCTTTAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.11, C:0.45, G:0.31, T:0.13
Consensus pattern (26 bp):
CCCCCAGGGGCCCTGTCAGACAGGCC
Left flanking sequence: Indices 48666 -- 49165
AAAGGGCCCTTTATGCTTTATTATAGTACAAAGCCCCGCAGTTATGTATGCTATGACTTTGGGGG
CCAGAAAAAAAGCTTTAACTATTCTGCTTTCTAATTTAATTTTACCCAATGCAGGTTCAACTTGA
GACTCTGGCGGAGGCCTTTCCGTCACTGCAGATTCCGTATCAGTATAATAGCAGGACTCTGTTCG
AATAAACGGATACATATGAATCCGTGCGTGAGCGGTGACCGCCGCATCAATTTGAACTGTAACGT
TTAAAACCACTTTTTTATTTATAAGACTCGCCTCTACCACAGCTGCATGTCTCAGGACATCCGGA
GACTTATTGCCTATCACCTGCATTTCATCAAGATAGGTTATTAAAAAACGTTCCATATCCAATTC
GTGGAAACTCAAAATGCGGTAACACTAATCTTTCCTATTTTTACTAAAACCCTGTCAGTTTTTTT
CTTTTTTTGAAAGCATCGGTTTTTTTCCTTTTTTTTTATGACAGT
Right flanking sequence: Indices 49221 -- 49720
GCCCTTTAAACTCCACCACACTATACAATTGATCTAAGATGTACAATTATATGTATTATACCCGA
AATCATCAACAACCAAAAAATACAATGTATTTTTTTTGTAATGAATCATCGTAGATAATTCATTA
CTTTTGGGGAAATAGCTTAGTGGTTTATAGCGCTGGTCTGTCAAGCCAGAAGTCGCGGGTTCAAA
TCCCGTTTTTCCCGGTGAAACTTGAATCCAATTAGAAAACCCAGTTCATCAAGATATATATATTT
TTTTACGAAAAAACCAGCTTAGATAAGCTTTTTTTTAAGCTTCGGCATACTGGCGGAGCTCTTAC
ACCCCGCATCCTCCGCGCATATGCCGAAGCCAAGGTAATCAAAAAGATTTTTTTGTGTTTTTTTG
GAGGTATGGCTGAGTGGTTGAAAGCATTGGTTTGCTAAATCAGTGCGACAAGAAACTGTGCAATG
TAATGTGGTTCAATTCCACAGGACGTAACCCCCGTCCTACCCAAC
Found at i:69551 original size:27 final size:27
Alignment explanation
Indices: 69521--69576 Score: 85
Period size: 27 Copynumber: 2.1 Consensus size: 27
69511 ATAAACACTC
*
69521 ATGCAAAAAAAGCACGGTATTACTAAT
1 ATGCAAAAAAAACACGGTATTACTAAT
* *
69548 ATGCAAAAAAAACACTGTATTACTTAT
1 ATGCAAAAAAAACACGGTATTACTAAT
69575 AT
1 AT
69577 TCAATCAACT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.48, C:0.14, G:0.11, T:0.27
Consensus pattern (27 bp):
ATGCAAAAAAAACACGGTATTACTAAT
Left flanking sequence: Indices 69021 -- 69520
AAAATAAATCATGTCATATATTTTAGGAACTAATTTAAATTCCAATAAACAAGTCAAAATTGCCT
TAACTCGAATCTTTGGAATTGGGCCTAAAAAGGCAATTCAAGTTTGTGATCAATTAGGCCTCAGC
GATACCATTAAGGTTAATAAGTTAACTAAATATCAATTTGACCAAATTATAAAAATAATAAGTCA
AAATTATTTAGTTGATTCAGAATTGAAGAGAGTCATTCAGAGAGACATCAAACGATTAATTAGTA
TTGGTTGTTATCGTGGGTTTCGCCATAATGCAGGATTGCCCTTACGCGGCCAACGAACTCATACT
AATGCTAAGACTTGTCGCAAATTAAGATACGTTTCGATTAGAAGTTGATCAAAAATTTATTTTTT
TTTTTTCAGTTTGTACAAAATATCTTTGTAATTAGTAAACGGATTAGATGGATCATAAAAAACAA
AAATCGATGATATCAAACAACACCAAAAACATTCAATAAACACTC
Right flanking sequence: Indices 69577 -- 70076
TCAATCAACTTTTGGTAATACAATTATTACTTTAACAGATTATAACGGAAATACAAAAACTTGGT
CCTCCTCAGGTTCAGTGGGTTTTAAGGGATCTCGTCGCTCAAGCAATTATGCTGCTCAAGCAACT
GCAGAAAATGCCGCGCGAGTTGCCATTCAACTTGGATTTAAGTTTGTTGAAGTGAGAATCAAAGG
ATTAGGTTATGGAAAGGAATCTTCGCTACGTGGTTTAAAACTAGGAGGTCTTATTATTACAAAAA
TTCGCGATGTAACCCCAACGCCACATAATGGATGCCGACCCCCTAAAAAACGTCGTGTTTAAATA
TCATCATAAAGTCCTATGTCATCATAAAATGGGAAATTGAGGTTCAAGAGTCAAAAAAATTTTTT
TAGGGTCCGAAGGAGACTTCTTTGGCTTTACAGGGCTTAACCCTTCTTTCGTAAAGGCAAAGAAC
GAAATCTACAAGCCATGTCTGGCCTTCGGCCCTTCGGACCCACAA
Found at i:86001 original size:242 final size:242
Alignment explanation
Indices: 85576--86065 Score: 980
Period size: 242 Copynumber: 2.0 Consensus size: 242
85566 TACCAAAGCC
85576 TGTAACGACGCCGACATTCCGGTGAACCCCCATAAAATAGAAGAATTAACTACCCCGCGAGGAGG
1 TGTAACGACGCCGACATTCCGGTGAACCCCCATAAAATAGAAGAATTAACTACCCCGCGAGGAGG
85641 CCTGGGACCTCTAGCACGGGACGCAATTGAAGCTGTCCGTAATTTATATTCCAAAAAATAGATGA
66 CCTGGGACCTCTAGCACGGGACGCAATTGAAGCTGTCCGTAATTTATATTCCAAAAAATAGATGA
85706 CTTAAAATATTATGTCACTATTGGAAAAAAGCTTCTGTTTTCTATTTTGCTTTTCTGTGCCTTTG
131 CTTAAAATATTATGTCACTATTGGAAAAAAGCTTCTGTTTTCTATTTTGCTTTTCTGTGCCTTTG
85771 ATTCTCTTCGACTTGCTTGACTGTTTTATCTCTTAAAACCTACGGGG
196 ATTCTCTTCGACTTGCTTGACTGTTTTATCTCTTAAAACCTACGGGG
85818 TGTAACGACGCCGACATTCCGGTGAACCCCCATAAAATAGAAGAATTAACTACCCCGCGAGGAGG
1 TGTAACGACGCCGACATTCCGGTGAACCCCCATAAAATAGAAGAATTAACTACCCCGCGAGGAGG
85883 CCTGGGACCTCTAGCACGGGACGCAATTGAAGCTGTCCGTAATTTATATTCCAAAAAATAGATGA
66 CCTGGGACCTCTAGCACGGGACGCAATTGAAGCTGTCCGTAATTTATATTCCAAAAAATAGATGA
85948 CTTAAAATATTATGTCACTATTGGAAAAAAGCTTCTGTTTTCTATTTTGCTTTTCTGTGCCTTTG
131 CTTAAAATATTATGTCACTATTGGAAAAAAGCTTCTGTTTTCTATTTTGCTTTTCTGTGCCTTTG
86013 ATTCTCTTCGACTTGCTTGACTGTTTTATCTCTTAAAACCTACGGGG
196 ATTCTCTTCGACTTGCTTGACTGTTTTATCTCTTAAAACCTACGGGG
86060 TGTAAC
1 TGTAAC
86066 TAATCATGCT
Statistics
Matches: 248, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
242 248 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31
Consensus pattern (242 bp):
TGTAACGACGCCGACATTCCGGTGAACCCCCATAAAATAGAAGAATTAACTACCCCGCGAGGAGG
CCTGGGACCTCTAGCACGGGACGCAATTGAAGCTGTCCGTAATTTATATTCCAAAAAATAGATGA
CTTAAAATATTATGTCACTATTGGAAAAAAGCTTCTGTTTTCTATTTTGCTTTTCTGTGCCTTTG
ATTCTCTTCGACTTGCTTGACTGTTTTATCTCTTAAAACCTACGGGG
Left flanking sequence: Indices 85076 -- 85575
GGGTATCCAATAAATTAGACTAGAAAGCAAACAAAATCCCAATTATGTGTGTCCCTCAAAAACAT
TCTTTTCCAAGCAACTTTTTCCAAAAACTTCCAAGCAACTTTTAACATTTTTTATAAAGGTTGAA
CTTATTATTCTTTGGTTCTTCTTAAGTAACACTTGGCACTACCGAATTTACTTTGTTTTATTTTA
ACTTATACTTTATTATTAAAATGAGTACTTTTTGGCAAAATTTGTGGTTAATTTCACTTTTTATT
GTTTTTTATGTTTTAGGTATGTCTTTTGTTGTTTGGCTATTGTTAAGGTCGGCGAGCATAAAAAA
CTTTATTTATACCCTTGTGGGAAAAGATTTTGTAATATCTTGTATAGGTAATTCTGGGGCAAAAG
CCGTAGCGAGAGCTCTTATACCTATATTGGTTGCGGGAGTCGCTGAAGCTGCAGCGCAGACGACC
CAGACGGAATTCAATTATCACGTATGCAAACGATATACCAAAGCC
Right flanking sequence: Indices 86066 -- 86565
TAATCATGCTTTTATGCCTATTGTCGTAAAAGCTTTTTCTTTGGATGATTATGTTTCTTGGGTAT
CCAATAAATTAGACTAAAAAGCAAACAAAATACCAATTATGAGTGTCTCTCAAAAACATCCTTTT
CATTTAGTAGATCCCAGCCCATGGCCTCTTTTGGGTTCACTCGGAGCTTTGGCAAGCACTATTGG
TGGTGTTATGTACATGCACTCTTTTACGGGAGGCGGAACACTTCTTTGTTTAGGCTTGGGAATGA
TCTTATATACCATGGTGCGCCCGGAGAAACATCGTACGACAAGAGGAGCTATCCACTCTTTTTTG
TGCCATTCAGGCTAGCTCATAAGCTAGGACACAGGCTCAACTTGCAGAGGAGCCATAGTAACATG
GCTTACTCGGGAGCAGCAAGTTTCAATCAGAGAACTGTGGGGCTGCCACCGCTAAGACGCTCTGA
AAGAGCAGAAGGTAGGGCTAGGATAACTAACTTGATACGCAATGC
Found at i:97850 original size:21 final size:22
Alignment explanation
Indices: 97808--97850 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
97798 AATATGCCTC
*
97808 ACTAATATTTTTTGGAAAAATT
1 ACTAATATTTTATGGAAAAATT
*
97830 ACTAATA-TTTATGGGAAAATT
1 ACTAATATTTTATGGAAAAATT
97851 TTTAAAATAT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.42, C:0.05, G:0.12, T:0.42
Consensus pattern (22 bp):
ACTAATATTTTATGGAAAAATT
Left flanking sequence: Indices 97308 -- 97807
TTTGCTTGCGCCCATAACCAGCCTTTAATCGCATTAGTATATTATAAACAGCGTGAACAAATCGT
TCGAGAAAGCAAACTACAAGGCAAAAATAACAGAATTGATTTGAGTTTTCTATTGCGTAATTTTA
CTTCTGAAGATCTTAATTCTACTTATACCAAAGAAAAGATTTATGAACTAATAACGGATTACCAT
GATGGCAGGCAGGAGCTCTTGTTTTTTTTATGGAACCACTTAGTTGATACTGTTAATTTCACATA
AATCCTGGTTGATCGAAAATATGGAAAAGAGGTTTCAGCAATTTCGGCAAATTGGTGGCGCTGCT
GGGTCATGGCTTTCGAAATAGGAGGCGGATATATAGAAAAAAGCTTGTCGATTTACGAAGATCCT
ATGAAAACATCAGGACTTTGGATATGATCTTTTTTTAGGTGTCATCGATCGAAGATATTTCCCCA
AAACTAGGGGCAGGGCGAGGCTCTAAGACTAAAAAAATATGCCTC
Right flanking sequence: Indices 97851 -- 98350
TTTAAAATATTAGTAATTTTTGGGAAGAAAACTCGACAAAAAACGGGATTGGGGTGTTGGCTTTT
TACTTAATTTAGTGAAGTAGACTATGAATTCTTTTTTTTAATTATTTTTACTGTTCTGTTAATTA
TGTGAATTCAGGATTCTTACTGTTTTGTTTGATTCTTTTGGAATGGCCTTGCCGGCCCGAGGCGT
GAACCAGCCAAAAGCGACTAATGGGTAACATGTTGGGCCTTTGCTTGGGCGGGCATTCGAAATGG
CCGAGAAAGAAGGGTCCTTCTTACATAAAGACTTATTTGGCTTTCCGGGTCCTCTGGCCGGCTTT
ACGATTTCCGCCCTGAAGGCCTGCCGGCCTTGGGCTTTCGGCAGAGGCCCTTGGCCTTCGGCTTC
GGCCTTGGGCTGCTGGCCTGCTGCTTGTGGGCCTAGCCGGCCTAAGGCATGTAGCCGGCCGAAGG
CTGCCCTTGAATGAATGGGGTTACAAGCCCTCCAGCATTTTTTTA
Found at i:98695 original size:15 final size:15
Alignment explanation
Indices: 98677--98708 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
98667 AGTTGTTTCT
98677 ATGATAGCATATGCC
1 ATGATAGCATATGCC
98692 ATGATAGCATATGCC
1 ATGATAGCATATGCC
98707 AT
1 AT
98709 TACGTCTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.19, G:0.19, T:0.28
Consensus pattern (15 bp):
ATGATAGCATATGCC
Left flanking sequence: Indices 98177 -- 98676
CGATTTCCGCCCTGAAGGCCTGCCGGCCTTGGGCTTTCGGCAGAGGCCCTTGGCCTTCGGCTTCG
GCCTTGGGCTGCTGGCCTGCTGCTTGTGGGCCTAGCCGGCCTAAGGCATGTAGCCGGCCGAAGGC
TGCCCTTGAATGAATGGGGTTACAAGCCCTCCAGCATTTTTTTAAGCACGGGAGCTCGTCGGAAG
TTTCTATTTTCATTTGAAACAAAAGCCAAAAATAGTAGTTTACTATATGAATTTGTACTTTTTCA
TCTGCTTAGCCATTTTGGTTCTATTGCCTAAGCTAATCTACTGGCCACACCCCTATTTTCTAGCC
CGTGGGTCGTCACGGCAAGCATGGTTTTATATTTAATAGATCACTGGGTAAACACGGATTCCGCT
TTTTTGTCCTTTTGCAAAACTAGATTCTTTCAGTACTATTTGTATTATTACCTCTCCGGCTCGAG
GAATGGTTACGGGATAACTATTACGGGAGATTTATAGTTGTTTCT
Right flanking sequence: Indices 98709 -- 99208
TACGTCTTTATTTGTTGAATCCGGGGGACAAAATGAAGTTATTCATATATATAGCATCAGTTTAC
TCTATAAGACTCAGATATAAAATTATAAATGAGAATCAACTCAAATTTTATAGAGCTTATAAGGA
TTCTTGGGGCGCAGGCGGGTTGAATAATGCCAACCGCACCCTTTAAAATCCTTTTAAGTGGCAAC
CGGATACCCAAACGTAACATGAGGAGCTATAGGATAGCAAACGCAGCGCCTAAACCTGCCCCGGA
AACATTGTCAGCCGCCGCTATGGGTACGGGCAGACTAGCCTCCGCAGTTGTGGCTGGAGGGGCGG
TCAACATTGCGACCACTAAGATGATCGCGAACTCAAACGAAGAAATCCAAAAGTAAAAAATGGCG
CTGAAGGAATATCAACAAAATTTGGCCAATATGGCGTGGCATTAGAGCTTAAAATGAAACCGTCT
AAGCACACGGAGACAAGTTATCACAATTTGCTTGAGGGCGCACGG
Found at i:100484 original size:2 final size:2
Alignment explanation
Indices: 100477--100523 Score: 67
Period size: 2 Copynumber: 23.5 Consensus size: 2
100467 GCTGCAATAG
* * *
100477 AT AT AT AT AT AT AT AG AT AT AT CT AT AT AT AT CT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
100519 AT AT A
1 AT AT A
100524 ATTTATAGGT
Statistics
Matches: 39, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.47, C:0.04, G:0.02, T:0.47
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 99977 -- 100476
AGGAAGCATTGCTAAATGACTAAATTTCGCTAATATGACTAAATTCCGAGCGAGGATTTGTAGAT
AAATATAGATAATTAATACTCTGGAATCCTCATCGCTAATGACACCTTCGCGAAATGACGCATAT
TTAGCTAATATGACTAAACTTGTTGAGGATCTGTAGTATAATATAGAGGAATACCCTTTAATATG
GAATTAAAGGGTGGGGAAGGGAATATATAATAGAATTATATATGAAATATGGAATAATTCTATAG
AATTAAAAAGGGTTAATAAATTAAATTAAAATAAATAGAATAAATTAATAAATTCAGAAATAAAA
GAAATGAAAAAAAATATATATATATTTATATATAATAGAAGAAATGCATAAATAAAATAGATTCT
ATTATTTATAGAAGATACTTTTTAATCCATGTTTATTCTTCGCTCATCTTCCAAAATAAAATGAG
CTACTATTTTTCTTCTTCGAAGAAGAAGAGGATGAGCTGCAATAG
Right flanking sequence: Indices 100524 -- 101023
ATTTATAGGTCAGGGAAGATAGCCTTTACCTCTAACCTTTGAGGATACTGAAGGCCTAGATCTTC
CCCTACTTGGGTTGGGTTACCATGTTCTTGAGATCTGTTATATAGGCCTCTAGTTTTCCTTCGGG
AACGCCCAAAGACTTCCATCATGGAAATGACATAGGAACTCCGGGCGGGGGTCATGGCACTTCTC
ATAGAACCTTAGGGACGCTTCCGCCAGGAGTCCAAACTAATAGGACTGAAGATAGGAAGCATAGA
CGGAGGGGAACGTCTTTTCGGTTACGCGGTACGTACGTCCTGTAGGTTCTGTAAGCATCTCGTCC
TTATGCAGTTTGTAAAGGCTGTCCGCTATATTCCGAAGATCAAGAATTCTATTTGTTTGTTGGAG
GGCGGGGGACTTTGTTTTGTCGGACACCACAAAATACTGTCCGACAAAACAAAGGCCACTTACGA
CCTCTACAGCCTTGGCATACCTTTTAGGATAATCTGGCAAATCCT
Found at i:127489 original size:14 final size:14
Alignment explanation
Indices: 127470--127497 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
127460 AAGGTATACG
127470 GGCATAGATTGGAA
1 GGCATAGATTGGAA
127484 GGCATAGATTGGAA
1 GGCATAGATTGGAA
127498 AAAGATATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.07, G:0.36, T:0.21
Consensus pattern (14 bp):
GGCATAGATTGGAA
Left flanking sequence: Indices 126970 -- 127469
CCCTATTTCCGCGGACTGCCTAGGAAAGGCCTGCTGCTTGTTGGCCTCTAAGGCCCTTTAGTGGT
AAGGAGCCGAAGGCAAGGCCATGGGTAACACTACAGTACATAGGCCGCTACGCGCCTGCTGCTTA
TGCGCTTTGCTATCCGGCAATTCGGTTAGTCGAATTAGCAAACCCGATAGTAACAGAGCATACTG
TCTAAGTCAAAAAACTGCTACGCACCTCATAAAAAAACGTCATCGTAGGTATTGTTATATGTGTG
TGTGAAGACGTTTTTTAAGATTTGCAAAACAGATAGTCATCGTCGAGCACCCCCCCCCAAGTCGC
CTTCTTTCGAATAAATTGAGCTAAACAATATATCTCGAGTATATACATCATCTTTTATTCGTACT
CCTTCTATAAATATCCCTTCAGCTTTCCTTGTCTTAGTAACTGAAAACTCTTCATCTTTTAAAAC
TCGGGGAAACCGTCCGCGCGTAGCGGAAGGAAAGGAAGGTATACG
Right flanking sequence: Indices 127498 -- 127997
AAAGATATGATAGATACATAAAATATGACATTGTCATATTTTATACAAATATAACTCGAAGGAGT
GCCAAATACAGGAAGGGGTAGCCGGGGTAGGCGGGCGCCTACCCCGAAAAAGAGGCCTGGCTCGG
TCAAGTCCCTAACTACAACTTTCGGGGCGGGCTCCGCCCTATACAACTTTCGGGGCGGGCTCCGC
CCTATAAGGACTAGGTCTGTATAGGGCGGAGCGGGTCAGTGCTTAAGTTGCACAAATTGCTAAGA
CGTCTAAATGCTTTCCTTGATAGCTGGAAGTTCTTCAAAAGTATGAAATGCCGGAGGGCTTGGGA
CCATCCATTCAAGTGTCGTTGAATTCTGTTCAACAGCCCAAGGACTTGGAGCACACTTGTTTTCA
CTAGTTAAAGTAAGAAAAACCACTACAAAGAAACAAAAAATCCCTACTACAGAAACATATGAGCC
AAAACTACTAAAGGCATTCCATCCAGCGTAAGCATCTGGATAATC
Found at i:127673 original size:28 final size:28
Alignment explanation
Indices: 127641--127698 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
127631 AGTCCCTAAC
127641 TACAACTTTCGGGGCGGGCTCCGCCCTA
1 TACAACTTTCGGGGCGGGCTCCGCCCTA
127669 TACAACTTTCGGGGCGGGCTCCGCCCTA
1 TACAACTTTCGGGGCGGGCTCCGCCCTA
127697 TA
1 TA
127699 AGGACTAGGT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.16, C:0.34, G:0.28, T:0.22
Consensus pattern (28 bp):
TACAACTTTCGGGGCGGGCTCCGCCCTA
Left flanking sequence: Indices 127141 -- 127640
ACCCGATAGTAACAGAGCATACTGTCTAAGTCAAAAAACTGCTACGCACCTCATAAAAAAACGTC
ATCGTAGGTATTGTTATATGTGTGTGTGAAGACGTTTTTTAAGATTTGCAAAACAGATAGTCATC
GTCGAGCACCCCCCCCCAAGTCGCCTTCTTTCGAATAAATTGAGCTAAACAATATATCTCGAGTA
TATACATCATCTTTTATTCGTACTCCTTCTATAAATATCCCTTCAGCTTTCCTTGTCTTAGTAAC
TGAAAACTCTTCATCTTTTAAAACTCGGGGAAACCGTCCGCGCGTAGCGGAAGGAAAGGAAGGTA
TACGGGCATAGATTGGAAGGCATAGATTGGAAAAAGATATGATAGATACATAAAATATGACATTG
TCATATTTTATACAAATATAACTCGAAGGAGTGCCAAATACAGGAAGGGGTAGCCGGGGTAGGCG
GGCGCCTACCCCGAAAAAGAGGCCTGGCTCGGTCAAGTCCCTAAC
Right flanking sequence: Indices 127699 -- 128198
AGGACTAGGTCTGTATAGGGCGGAGCGGGTCAGTGCTTAAGTTGCACAAATTGCTAAGACGTCTA
AATGCTTTCCTTGATAGCTGGAAGTTCTTCAAAAGTATGAAATGCCGGAGGGCTTGGGACCATCC
ATTCAAGTGTCGTTGAATTCTGTTCAACAGCCCAAGGACTTGGAGCACACTTGTTTTCACTAGTT
AAAGTAAGAAAAACCACTACAAAGAAACAAAAAATCCCTACTACAGAAACATATGAGCCAAAACT
ACTAAAGGCATTCCATCCAGCGTAAGCATCTGGATAATCAGGAATGCGACGTGGCATACCTGCAA
GCGGTTTTTTCCTTATTTATCAAATGTTAATGGATTGTTACTAAAGATTTTTCCTTTGTAAACTT
CATCTGAAATTAGTCTTTTATACTTTTCAGTGTGTTTAAATCCCAATGTTGAATCAGTTCTTTTA
TTTATATTAAGAACTGGTTTATAAAGATCTAAATAGTACTGTTCT
Found at i:127934 original size:21 final size:22
Alignment explanation
Indices: 127902--127944 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
127892 TTAAAGTAAG
127902 AAAAACCACTAC-AAAGAAACA
1 AAAAACCACTACTAAAGAAACA
*
127923 AAAAATCC-CTACTACAGAAACA
1 AAAAA-CCACTACTAAAGAAACA
127945 TATGAGCCAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.60, C:0.26, G:0.05, T:0.09
Consensus pattern (22 bp):
AAAAACCACTACTAAAGAAACA
Left flanking sequence: Indices 127402 -- 127901
GAAAACTCTTCATCTTTTAAAACTCGGGGAAACCGTCCGCGCGTAGCGGAAGGAAAGGAAGGTAT
ACGGGCATAGATTGGAAGGCATAGATTGGAAAAAGATATGATAGATACATAAAATATGACATTGT
CATATTTTATACAAATATAACTCGAAGGAGTGCCAAATACAGGAAGGGGTAGCCGGGGTAGGCGG
GCGCCTACCCCGAAAAAGAGGCCTGGCTCGGTCAAGTCCCTAACTACAACTTTCGGGGCGGGCTC
CGCCCTATACAACTTTCGGGGCGGGCTCCGCCCTATAAGGACTAGGTCTGTATAGGGCGGAGCGG
GTCAGTGCTTAAGTTGCACAAATTGCTAAGACGTCTAAATGCTTTCCTTGATAGCTGGAAGTTCT
TCAAAAGTATGAAATGCCGGAGGGCTTGGGACCATCCATTCAAGTGTCGTTGAATTCTGTTCAAC
AGCCCAAGGACTTGGAGCACACTTGTTTTCACTAGTTAAAGTAAG
Right flanking sequence: Indices 127945 -- 128444
TATGAGCCAAAACTACTAAAGGCATTCCATCCAGCGTAAGCATCTGGATAATCAGGAATGCGACG
TGGCATACCTGCAAGCGGTTTTTTCCTTATTTATCAAATGTTAATGGATTGTTACTAAAGATTTT
TCCTTTGTAAACTTCATCTGAAATTAGTCTTTTATACTTTTCAGTGTGTTTAAATCCCAATGTTG
AATCAGTTCTTTTATTTATATTAAGAACTGGTTTATAAAGATCTAAATAGTACTGTTCTCGAGCT
AAATAATCCTTTTTAGTCATAGTACCTGTTGAACCACATAACTCAATAATAACTAAACTAAAATT
GTCATGACCATATTTCCAAATATAATTATAAATATATCTGTTATCAGATAATTTAGAAGGCTGAT
AGTATTCAGCAAGTCTATCGCTTTATTTATAAGCACTACCTACATATTGTTTACCATTAACTAAA
TTATGCCAAAGATAGATTCCAGTTTCCGTTAGATAATCAGAAACG
Found at i:165292 original size:24 final size:25
Alignment explanation
Indices: 165233--165279 Score: 78
Period size: 24 Copynumber: 1.9 Consensus size: 25
165223 GGGGGCCGCG
*
165233 ACTGTCTGACAGGGCCCCTGGGGAA
1 ACTGTCAGACAGGGCCCCTGGGGAA
165258 ACTGTCAGACA-GGCCCCTGGGG
1 ACTGTCAGACAGGGCCCCTGGGG
165280 GCCCTGTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 11 0.52
25 10 0.48
ACGTcount: A:0.19, C:0.30, G:0.36, T:0.15
Consensus pattern (25 bp):
ACTGTCAGACAGGGCCCCTGGGGAA
Left flanking sequence: Indices 164733 -- 165232
TGAACTTTCATTTACATAGTAATTGAATATTAGGTTTATTATTGTTTGCTTCAAGTTTAAGAGCT
GATTACGAAAAGGATGGATGTCTGAGCGGTTGAAAGAGTCGGTCTTGAAAACCGAAGTATTGATA
ATACCGGGGGTTCGAATCCCTCTCCATCCGTGAGTATGTTAATGAGTTAACTGCATTCTCTTCAA
TGCGTTTTCCCGAACCCTGGGGCTCTTCGGGCACTCGACCTATAAGGAGAGGGTCGAGCCGCCTC
TGGTGTTCGTGCGCGGAAATCGTCAAGCCATTTCTGGCCTTCGGCCCTTCGGACCCTTTGGGCCC
GAAGGATACTGCTTTGGCTTCCCGAAAAAAGGGCGCAGAAACTTTCCAGTATCTGCCCGCAGGCA
CGTAATGCGAAGAAAAAAGGGCCCCGGACTTTTTTGTCTGACTGACAAAGCCCCGGACTTTGTTA
TGTCGGACACCACAAAACAAAATACTGTCCGACAAGGGGGCCGCG
Right flanking sequence: Indices 165280 -- 165779
GCCCTGTCAGACAAAAAAAGGCAAAAAACCGATGCTTAAAAAAAAAACTGATTTACTTAAAATAG
TTTTTTTTCCCTGCGGTACAAAAACTAATTGAACCAATTCCAACTTGTACGGATAGAGGGACTCG
AACCCCCACGAACATTATGGTCACCAGAACCTAAACCTGGCATGTCTACCAATTCCATCATATCC
GCCAACCCTTGAAGTTATGCAATCACTAGGCCTTGGATAAATAAAAAATCTAGAAAAAAAGGAAA
GCGAAGTTTAAAAAAATATTTTAGGCACGTAGTGCTCGACCCGATAAGGGAGAGGGGTAGAAAAA
TATATATTTTTTCCGCTACGCGCCTTCTTTCTCAGCCATTTATAGAAGCGAATGTCAAACAAAAA
AAGATTTTGTAGAGTGCCTCTCCGAACCCAGAAACCAGTATCTGCGCGCAGGGCCCCAAAGGGGA
CTTTTTTTGTCTGACAAAAAAGGGCCTGCGGCCGGAGCCTATAAT
Found at i:168230 original size:18 final size:18
Alignment explanation
Indices: 168205--168248 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
168195 GAGGCGCGAA
168205 GACCAAAGAGAGA-AGGTC
1 GACCAAAGAGAGACA-GTC
* *
168223 GGCCAAAGCGAGACAGTC
1 GACCAAAGAGAGACAGTC
168241 GACCAAAG
1 GACCAAAG
168249 GAAGAGAGCC
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
18 21 0.95
19 1 0.05
ACGTcount: A:0.41, C:0.23, G:0.32, T:0.05
Consensus pattern (18 bp):
GACCAAAGAGAGACAGTC
Left flanking sequence: Indices 167705 -- 168204
ACAAAGCAATAGCTTCAGTTAAAGCAAAACCTAAAATGGCATAACCAAATAATTGCTTAGCCAAT
GATGGATTTCGCGCAACAGAATTAATCAAAGAATACCGATAGGGTTCTTCCCCCCGGTCAGAACC
ACACGTGCAAGTTTCCCTGCATGTGGCTCGTCCATGGCAATTTCTTCAGCTTTTGTGGCTTGGCC
GTATAAGCGCTACTAGCCCTCCTTACACCGGGACGCGCGACTACTGTGCAATTCCCCCCTCCCCT
GCACCTTGTAACTAAGTCATTGTAGGCATAGCGTGATCCGCTTTCTCGATTTGGCTATGGTTTCC
CTAGCAAGAGCGCCGAGACCGGGATATATTGAAAATATCTCAAGTGATACAGTTAAAGCTGCAAA
AAAAATTTTGAACTAGTCTAAATGGCTGAGAAAGAAGGGTCCGCAGGCTAGAAATGGCTTGACGA
TTTCCACGCACGAGTGCTAGAGGGAGAAGAGGGGAGAGGCGCGAA
Right flanking sequence: Indices 168249 -- 168748
GAAGAGAGCCTAAACATCTTTTTTTTGCCGGAGGCGCGGGATAGAGCCTTTTGTTGTGAGTAGTC
TGTCCGCTCTATCCACGGCACTCCATCACAGGGTTCCTCGAATATAGTCACCTGACTCCAGAATA
TGCTTCCTCGAGTATAGTAAGCTGATTGAACCTAGTAGCGTGGAACTTTCCTGTAGTTTTTAGAG
AGGTGGGGTAGTATAGTGACGCTACCTCCTTGCCTTTTTCTGTGATCCGCAGGTTTGGACCAAAC
TTTAGTAAAGCAGCTTTGGCTGACCGTAGCCCGTGTTTTCTGGCCAAGGTTAGCGCGCAGGACTT
TTTATAGATGGACACAACTTTCCACAGGGAAGAGCGCTTGTTCACAAATGAATAGTAGTTAACAA
TGCCGCGTATCACCGATGAGAAGTGGGTAAGAATGTGTTTGTCCCCTGAGGAAAGCAATCGTGGA
TTGGAGGTTGCTCGAGCTAAGCCCTTGGCGTTTTTTTTCGCGTAT
Found at i:169179 original size:19 final size:21
Alignment explanation
Indices: 169157--169199 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
169147 AAAAAACAAA
169157 TTTT-CAAAAAAATATTTTTT
1 TTTTACAAAAAAATATTTTTT
* *
169177 TTTTACTAAAATATATTTTTT
1 TTTTACAAAAAAATATTTTTT
169198 TT
1 TT
169200 GTTGTTCGCG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 4 0.20
21 16 0.80
ACGTcount: A:0.35, C:0.05, G:0.00, T:0.60
Consensus pattern (21 bp):
TTTTACAAAAAAATATTTTTT
Left flanking sequence: Indices 168657 -- 169156
AGAAGTGGGTAAGAATGTGTTTGTCCCCTGAGGAAAGCAATCGTGGATTGGAGGTTGCTCGAGCT
AAGCCCTTGGCGTTTTTTTTCGCGTATCCAAGTTCCAAGGCTTTAGTTATTAAGTCCTTTATGGG
AGCTATTAGTTGTGGACGAGATCGGAGTCTTATTTGTTTGACATCGGAGACCTTGTCAGTGCTTA
AGATTTCCACACTTCCGGTGCCGTAATATATTACTAATGCGCCTAAGTATTTGGCCATCTCGGAC
TTTGCGTGTAAGATTTTACTTTTCTGTTCGTTTATGTCCAACTTCAGTTCTTCCTGCAGGAAGTT
TTGCACAGCTTTTCTCATATCTAGGGCATCTTGTTTGCTGCCTATAACACCTAAAATTATGTTAT
CCGCGTACCGGAGGTACTTAAGTCTTTTTAATCCTTCTTTCTCAGCCATTTCTAGAAGCGTCCTT
CGGCCCAAAGGGCACGAAAGTTTAGGGTTTCGAAAAAAAAACAAA
Right flanking sequence: Indices 169200 -- 169699
GTTGTTCGCGGTTTATCCACTTTAGGTGTTTGATGTTTTTGATGGCCTGCTCTAATTCTGTATAA
TACTTGAAGAAGGCTTTGTCCTTTGAATGGATATTAAGCCTTTTCTTATATTCCGCCGACGCGGG
GCGCATATTCCCTACATTGTATTTGGGTATGAGTATGTCTTCGACATAACAATCCAACTTATGTA
GGAAGATATTGGCACAAAGCGGGGAGATTATAGAGCCCTGCGGAACGCCCTCTGTGTTGTATTGC
GTTCGATCTGTAAGGTTATATACATCTATGTATCCTGCGTTAAGTAGCTTTCGCATAAGATCCTG
TAGTGCTTTAGATCGCAGTACTGATTCCATTTCCTTAATAAGCAAGTCATGATGAATCTTGTCAA
AGTCTTTCTTAATATCAATTTGTACAAGCCAAGTCAGTGCCGTCCACGAGTAACGGAGGTCTCGG
AGGGCTTTATGACAGCTTCTCCCAGGGCGGAACCCGTGGCTTGAG
Found at i:171874 original size:17 final size:17
Alignment explanation
Indices: 171852--171888 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
171842 ATATTCAAAC
171852 ATTTTTCTTGAACATAT
1 ATTTTTCTTGAACATAT
171869 ATTTTTCTTGAACATAT
1 ATTTTTCTTGAACATAT
171886 ATT
1 ATT
171889 GCATTTGGTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.30, C:0.11, G:0.05, T:0.54
Consensus pattern (17 bp):
ATTTTTCTTGAACATAT
Left flanking sequence: Indices 171352 -- 171851
TACAACCTCGCCGTCGGTCAACTCTTTGGCTTTTTATTCCAAATCACAATAATAAATGACGTGAC
CGAAAAGATAACCAAGAAGTAAGCCCGAGAGAACCATCGGTCTTGCTATACTTATATGGAACCAT
AGAAGAAGTGATACATACCATGAGTTGGGCTATTTGACTGGCTATATCTCGGAAATCCTTAGTAT
TCGCAAGAGAAAGCCAAAGGTATCGCGTACTTTTCCGTGATGTTGTGAAAATCGATGTTTCCGCG
TAGAATAAGCGGTGGTGGGGCGAAGACTACGGCCTAAAGGGTTCGGGTCGAGCACTACGTGCCTT
CAATATACAAGCCCTCTCCCGTTGGTCTTCGTCCCCCTCGGGGCTTCTCCCGCTACCCGCGCACT
CCGTGCCTATGGGTCCGAAGGAGACTTTCTTTGGCTTTACGAAAGAAGGACCTGAAGGGCGCGAG
ACTATAGGGAGAGCTTTCTTTTTATTTTTTACGTAATATTCAAAC
Right flanking sequence: Indices 171889 -- 172388
GCATTTGGTAATGTTCGATATAATAAAAACTATGGAATCCCCGGGATTCCGAATCGACAACAGCT
TCAAGAAAACGAAGTAGGTAGCAATGACCCTCATATATAAAAGTGAGCTCCTTCCACAAGGTTAA
ACTAAGTAAAAGGGGATAGATGGCTATCAAATACCAATCGGTAGTTGAATATGTTGCTGTATTCT
CCACATTCTCGAGGTGATATTCAAAAATGATGTCATAAAAACAGTCTGTTGGTAAAATTGAGTCA
TATTAATGGTTGTGACAAAGTGTTTTTGGCTTACGCCAATCTTGTTGTTTTTCAGATTTTTTTTG
ATTTTGGTTCAAAAAGTATAAGAAATGGCTAAGTAACATAAGGGTAATGTATTGGATTGCAAATC
CTAGAAAGATGGTTCGAATCCGTCCTTAGCCTACTTTACGATTCTATTGTTCCTGAAAATAACCT
ATTATCTAATAAGTACAAAGATCTTGACCACCCTTTAGACTTACC
Found at i:178544 original size:22 final size:22
Alignment explanation
Indices: 178516--178557 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
178506 GCCTTGTCAA
178516 TTTTTT-CCTTTTTTCGTCAGTT
1 TTTTTTCCCTTTTTT-GTCAGTT
178538 TTTTTTCCCTTTTTTGTCAG
1 TTTTTTCCCTTTTTTGTCAG
178558 ACAGTCCCCG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.05, C:0.19, G:0.10, T:0.67
Consensus pattern (22 bp):
TTTTTTCCCTTTTTTGTCAGTT
Left flanking sequence: Indices 178016 -- 178515
GCAATGGCTATTAGCAGTGTGTTATTCTTATTAACAAAACATCCCCTTTTTCAGTTATTTTCCAA
AACCGCTGCCAAAATAGGTGCTTTGTTTACGTTGTTTACCCTAGTCACCGGGGGTTTTTGGGGAA
AACCTATGTGGGGTACCTTTTGGGTGTGGGATGCTCGTTTAACCTCTGTATTAATCTTGTTTTTT
ATTTACCTGGGTGCACTGCGTTTTCAAGAGTTTTCTGCGGATGTTGCTTCTATTTTTATATGTAT
AGGGCTAATCAATATACCAATAATTAAGTTTTCTGTCAACTGGTGGAATACATTGCATCAACCTT
CAAGCATTAGCCAATTTGGGACTTCAATACATATTTCTATGCTCATTCCAATCTTTTTAATCTTT
GCTAGCTTCTTCTTTTTAACTGGGATTTTTTTTATTTTGGAAACACGTCAAATAATTCTATCTTT
TTATTTTCAGCGAAAAAGCCAATGACTTCCCCAGAGCCTTGTCAA
Right flanking sequence: Indices 178558 -- 179057
ACAGTCCCCGGTCCCGTCTGACAGTGCCCCGCCCCGCGGGCCTTTTGTCATCAGGAGCCAAAAGC
CTATAGGAAATAAAACGCGCGCAAGGCACGTAGTGCGGTAGCCTGAAGCCCTACGGGCCGCCTTA
CCCTATTGGTTCGAGAGTTAAGGGCCAGCAGGCCGTAGCAGCTCAAAGGTCAATTTCTTTTATTG
AAAAACCTCGCCAAAGAATTCTTTTTATTCGTTATATGGACCCCGTCAATGCTGGCTGAAGTAGG
CCTTAGGTATAAAAATCTATTTTTTTTATACCTAAGGTCTTGTATTGATGGGTAAATACTGCCCA
TGATGTATGACGTCAATCATGAAGAACACAAAGTTTCCATGATCCGTGAAAAAGCAAATGATAGA
GCTGCTCGCCAATTCTTCTTGTTGATTCGCAGAAAAGGCAAGGCGCGTACGGCTGCGGCCCCCTA
TTCTATGGGGTTCATAGACGCTATTTTGTGAGAGTTTTAAGAGGC
Found at i:182371 original size:26 final size:26
Alignment explanation
Indices: 182335--182387 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
182325 CTCACTTTTG
182335 ACAGATTGGATTGGAATTAAAAATTC
1 ACAGATTGGATTGGAATTAAAAATTC
182361 ACAGATTGGATTGGAATTAAAAATTC
1 ACAGATTGGATTGGAATTAAAAATTC
182387 A
1 A
182388 TTGTAGGGGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.43, C:0.08, G:0.19, T:0.30
Consensus pattern (26 bp):
ACAGATTGGATTGGAATTAAAAATTC
Left flanking sequence: Indices 181835 -- 182334
TTTAATTATTTATAAACCGTCCCAAAAAACCCCATTCATGTTTGAGCATGATGGATCACGTCCTG
CCCTGTTGCAATCCCGGCCTACCGAAGGTGCGAAGCTCTCGACCAACGGGAGAGGCTTTAGCTCT
CGACCAACGGGAGAGGGAAACTTCTTTGGTCCGAAGGGCCGAAGGCCAGAAATGGCTTTAGGATT
TCCGCACACTTCTTTGCCTTTACGAAAGAAGGGCTTTACAGTTCTCGAACATAATAGTTTTTCAC
ATTGGTTGACTATGTTCCCAGAAAAAAGATTCTATTTTTCAAATCAAGAAAGGAGCACTACCAAA
GTGGCTATACATACCAATCTCTTTACGGATCTATATGCTTTGATTGGAACTGGAAGTTTTGAAAC
AGGCTGGTATACGACAGTAATTAAGCTCCCTTTTATTTTCTGTATTTGGATAGGGTTCATTATGG
CTTCGTTGGGAGGCTTGCTTAGTCTTTTCCGTAAGCTCACTTTTG
Right flanking sequence: Indices 182388 -- 182887
TTGTAGGGGTTGGTTCTTTTTTTTTTTTAATACTTTAGCTATGTTAAAAAAAAAAAAAAATGTAT
CTGAATAAGGAAATCTACGAATAACCTGGTATTGCGAGAATGATTTTATTATGGATTTTGTCTTC
CCTAAGACCCCGGTATATATATTTATCACATGTGTATAAGGAGCCTGCTCAGAAGAAAATTCTAG
ATACAGCGCATATTTCCATTTATGTGGGTTGCGCAAAGATGCTGTATTGTATATTATTCTATTCT
TAGCACATAGGGACATAGGTCGTCGGTCGGTGCGAAATCATGCCCGTTTTTTTAGAACTCTGTGG
ATGGGTGGCTAAAGTTCGCTATAGAATTTTTATATCGATGAGGTGTCCAATCTTATATAAAGAGA
GCAGCATTACATAGATTTATTACTCCCCTCTTACAACATAAAGCAGATGGCGGGTTATAGACTAG
GTTATAAGCATTCTAAGGAGACCCGGGATACGATGAGAGACGCTA
Done.