Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NC_029130

Parameters: 2 7 7 80 10 50 500

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500

Length: 978846
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.23


File 3 of 5

Found at i:449548 original size:14 final size:15

Alignment explanation


    Indices: 449520--449549  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

     449510 TTACGCATTA

                           
     449520 TCCCGAACGTGCCGG
          1 TCCCGAACGTGCCGG

                           
     449535 TCCCGAAC-TGCCGG
          1 TCCCGAACGTGCCGG

             
     449549 T
          1 T

     449550 AGCTGTGTTC


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    7  0.47
  15    8  0.53

ACGTcount: A:0.13, C:0.40, G:0.30, T:0.17


Consensus pattern (15 bp):   
TCCCGAACGTGCCGG

Left flanking sequence: Indices 449020 -- 449519
TTTCCTCCCTCATACGTCATACGTAAGGTATCCATCCGCTCCCCACGTGACGGCTCCGTCGGGTA
ACCGGTAGGGAACGACCCTTCCATGGGTCCATTTCCGGCACCACCACCAGTCGTAACCGGACGGA
CGCGTATGGAATAACCTCAAGTGACTGCACGTCCCTCGCGATCGTCTCGGCACCTCACATATATA
ACCCGTAATGATGTTGTAGGGATCTGTATTGAACTTTAGTCGGGGAAGTGGAACCAGTGAATATG
CCCGCGCATGGCTTATCTGGCAGTAACGTACGTCGTCATACCTTATTAAAGACGTCATGTTTCCA
CCCACTAGATCGGCTCTACAACAGAATCGGTGGAGGGGGGAGAGGCGAAAGGGAATTGAGTTTGC
CCAAGCGCCACCTGGTTGGTTGATGCGATGGTTATTGGATACGAGGTTGGCGCGTCTATAACCGC
ATTATCCCGAACACGTGCCGGTAGCTGTGTTCGTTTTACGCATTA


Right flanking sequence: Indices 449550 -- 450049
AGCTGTGTTCGTTTAAGAAGGCACTATGGTGGTTCGTTGGTTGATCGTAAACGCTTTCCCGTTGA
TCTACTTGTCGGTCACTTGAGAAAACGTTCTTACGTGAGGTTGTCAATCAGCCCTATCAATATGG
TATGGCATACGCGCAACCGATATGGCTGTATTTATTCCTCGTTTCTTCCAGCTGCTCTAGCTACT
CTATCACCGCGGATATCAAGTGCGTATCTTCGTTAGTAGTGGGATGTGGTAACCGGCAGTCCCGC
ACAAAACGGAATAATTCTATCGAACTCACCGCTTCACTCAGCCTATATATCAAGGTGTTATCGTG
TAACGAGTAAGCGGCCTACCCCCACCCCGTAGGCCCGGGTTATGACCTTCCTCCAAATGACAAAT
GATTTTCCAGAATCGAGAATCCGTTGTCAACTAACTCAGTCCATATCGCAATTCGAGAGTGAGTG
ACTCGGCCCAGAGAGGGCGAGAGCCACTTGAGGTTACGAAGTCTT



Found at i:450376 original size:22 final size:22

Alignment explanation


    Indices: 450344--450387  Score: 79
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     450334 TCTGAATTGT

                                  
     450344 CGGTGGACGGACCGCACCCACG
          1 CGGTGGACGGACCGCACCCACG

                  *               
     450366 CGGTGGGCGGACCGCACCCACG
          1 CGGTGGACGGACCGCACCCACG

     450388 ATACGGTGCC


Statistics
Matches: 21,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.16, C:0.41, G:0.39, T:0.05


Consensus pattern (22 bp):   
CGGTGGACGGACCGCACCCACG

Left flanking sequence: Indices 449844 -- 450343
CACTCAGCCTATATATCAAGGTGTTATCGTGTAACGAGTAAGCGGCCTACCCCCACCCCGTAGGC
CCGGGTTATGACCTTCCTCCAAATGACAAATGATTTTCCAGAATCGAGAATCCGTTGTCAACTAA
CTCAGTCCATATCGCAATTCGAGAGTGAGTGACTCGGCCCAGAGAGGGCGAGAGCCACTTGAGGT
TACGAAGTCTTCAATCACCTGCACAAGACCGAACAACTAGTCCGCTCCAGTGTGCGGGTACAACG
AAAGGCAGCTGGAACCGTGTAGCTTCCGTCAACTGACACTCAGCAACCACCCGGCTAGACCAGCG
TACTTATTCCGATCACCATTGTTCCTCTTGGGACTAGATAGACCCACTCCGGGAATGCCCACCCA
CATAATGGCATTTCCCTTCGTGCCAAAGACAGACACATTGTTGTGCCCGCCATTTTATATGGTAA
CACGTGAGAGGCTCCGACGTAACCCGCTTAGCAACTCTGAATTGT


Right flanking sequence: Indices 450388 -- 450887
ATACGGTGCCGTGTCTAAAGAGCCGATAGGAGCTGAGTGAGATTCGGCGTGAGCTGCGCGCTCGT
CGTAAGACCCAAATGGAACCTTGTTGTGCCGTGCTCGTGCTCTATATGGTTGGTGGTTGGTTCAA
TCTATCAAGCTAGTGTTGTGTGGGTATGAGTCGTGTTGTGGCTTCATACTATGAAGCTGCCTAAG
CTGGTTTATTGCCACATGCCGCGCGATCTGGGCCACCCCACCGTGCGTCAAATTAAATAACCATC
GTTTTCGCCACATATACATATATATAAACGAATCACTTTATATGGTATAGCATACCCATGATGCC
AGTCCTTGATGGTGGGTGGCTAGTCTGGATCCTTCTTCCCGTCTGAGATATCGTTGGCAGAGTAG
AGGTTCCGCCCGTTGTGTCGTCGGTCTACCGAGAAGGTAAACACCCGGCTATACGGTGCCGTATA
GTTGGCAGAGATCATTGTGGTGCGAGAGCACCGTTCAGAGTTCTT



Found at i:452750 original size:16 final size:16

Alignment explanation


    Indices: 452729--452760  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

     452719 GAGAGCGTTC

                            
     452729 TAGTTCCCACATCGGG
          1 TAGTTCCCACATCGGG

                            
     452745 TAGTTCCCACATCGGG
          1 TAGTTCCCACATCGGG

     452761 CTGTCGACGC


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.19, C:0.31, G:0.25, T:0.25


Consensus pattern (16 bp):   
TAGTTCCCACATCGGG

Left flanking sequence: Indices 452229 -- 452728
ACAACCGTGGCGGGTTACTTGTCCATAAAACACAATAGTTCATGAGGCCGAGCGGTCTGATCGAG
CTGCTTTAGACCACCAGATCCGTGCTCTCCCAACGGTTTCGGGGGGCGCGGTCAGAGTGGAGCGA
ATCCCTCTCGGTGTGAAGAAGCCAGCATCACATCATATAGGCAGGCAGCGGTTGGCTGACTCAAC
GAAATCTGTAGTTTTGTTCTTTGTTCATTTGGGTTACGTCGAATAACAACTACCAACGCTGTCTC
TTCCACCACAACACCGATTATGTGAAGCATGACGCTTCATAATCTCTATGCAGCTACGGTGAGCC
TCATCACTTACTAGGTGCCTACAACAAAGACTGGCCGATCCCCCACGATACGGTGCTGCGATACA
TCTTGCTGAGAGGCGTGCATAGGGGTGTGCACACTTTGATAATCCCAACTCAGTGTTACGCTAGA
CTGGCTTCTTGAAGTGATGCCGCTCTAGGTCTTATGAGAGCGTTC


Right flanking sequence: Indices 452761 -- 453260
CTGTCGACGCCTATCGATCAGGCAATAAGAAGACAACGGGTTAGGGAGAGGTTCCCGCCCGTAAC
GAACCATGTCACCGTAACATGGACGATTGGAAATATGTAACGTGGCAGCCAGCTGATACGGTAGG
GTAGGTAGTAACTTGCTATGTAGGGGCAATTCTCTGAGTTTCCCGTACCGCTCCCAAGCGTTCTA
GTGACATATAGGGCAGTAGGGAATGGTTGAGGGAATGACCCACTCATCGCGCATGGAGCAGCCTG
ACAGGTGAGAATGGGTAATTCCTAGCTCTGTATATACGGTAACAAGCTGGGAATCGTGCCATTCT
ACGTAACTAGTCAAACGCACGTAGGGACAGTGGGTGAAGCTACGGTTGCTAGGGCCTGGGACGGC
ATTTCCTCAATCGGTGTCATAACACGCCACCACCTTATATAACGCCCCCAAAACCCCTCTCGAAC
AATGTGGGGCGAACAATGTGGTGGATAAATCACCCGATCCCTATC



Found at i:457089 original size:20 final size:20

Alignment explanation


    Indices: 457064--457102  Score: 78
    Period size: 20  Copynumber: 1.9  Consensus size: 20

     457054 CGGGAATTGA

                                
     457064 CCCACGGGAAATAAGCACCG
          1 CCCACGGGAAATAAGCACCG

                               
     457084 CCCACGGGAAATAAGCACC
          1 CCCACGGGAAATAAGCACC

     457103 CTTCGGCCGT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   19  1.00

ACGTcount: A:0.36, C:0.36, G:0.23, T:0.05


Consensus pattern (20 bp):   
CCCACGGGAAATAAGCACCG

Left flanking sequence: Indices 456564 -- 457063
ACATCGTATCTGGCTCCTTCTTAAGAAGCATGTTGTGGGCTTGTGACGGTTCCGGGATTACGGTG
GGCGAACGAGGAGTGGGCGAACGAGTTTGGGGTGGGGGTTGTTAGTTAATAGGTTGTAGCCGGAA
GACATGAATCAACAACCCACAACCCCGAAACCGGTATACGTTAGTTGTTGTTGATGCGGCTAGCA
GGAAGTTGGCTGACGGCGGTACTAGTAACTAACGATCGCCACCACGCGGCATCCTCCTTTATCGT
ACGTTGAGTTTGTCTCATATCTGTACGGGCCAAGGTATCTGCAGGTAGTTTCTAGTTGTTGGCTG
CATGCATGGGGCGTGTGGCCGGCTACAGGGGGTACTATATGTACGGGTGTTTGGGGGGGTTGCGG
TACGGGTTATTGCCGGCATATGCTTGCCTACCCTACAGGGCGTACTCAATAAGTACTGAGGGAAC
GCTAAGTAAACATGAGTACGCGGTGTAACTGGCCCCGGGAATTGA


Right flanking sequence: Indices 457103 -- 457602
CTTCGGCCGTTCGTTCACCCTACTGGCTCGCAAAAAAGGGCCCGCTCTTTGTGCTATCTATCTAC
CTCTCCAAACACAATATCTTGAGTACCAATGATGGTGACCACATCTGCTGGCATGTGATGTTTGG
ACATAGAATCGAGTCCTTGTAAATGGGCAGAGCCGGGTGCTCTTATTCGTAGACGATAGGGACGA
TTGCTTCCATTACTGACCAGAAGCACACCAAATTCTCCTTTAGGTGCTTCAACTGCGGTATGGGT
AGAAGAAGCTGGTACAGAAAAACCTTCTGTATAGGGTTCAAAATGGTGAATTGAGGTAGAGTAGA
AGACCGATGACCCCGTAGTCAGTCATTCAGGCAGGCCACTGAACGGACCCTTATGATGCTCCTGC
CCTCATCATCTTTCTCTCTCCAAACCTAACGTGATAGTTTCCCATCATAAGGCTCTCTATCTTAG
TGATTATGGCTCCGCCATTACTGGACAAGAAGCTGATTCGTCCAG



Found at i:459440 original size:5 final size:5

Alignment explanation


    Indices: 459430--459454  Score: 50
    Period size: 5  Copynumber: 5.0  Consensus size: 5

     459420 GCCTAGGCGG

                                         
     459430 CATAC CATAC CATAC CATAC CATAC
          1 CATAC CATAC CATAC CATAC CATAC

     459455 AGTAGGGGAC


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.40, C:0.40, G:0.00, T:0.20


Consensus pattern (5 bp):   
CATAC

Left flanking sequence: Indices 458930 -- 459429
CCTACACACACATGTTGCGTTACGAAAGTGTTTCGACTCGTAGTTCAGTGGGTGAGATGGCTGCG
CTTTAGCTCACTCAAGAATGGGACGGCAGCGGTCCGCCGGCAAGCTCGTTCTGATCCTGGACGCA
GTACATTGGAATCCTGATGCACCACCACGAACGCTACCGCTTAGTCCGCCTGCGGTAAGGCACCA
CCCAGCTGTGCCAGCAGCCAACCCCTAGTGTCAGCTCAGTTATCCTCATCAAGCCACTTACTGTC
TGTCTAGCTAGCTCCCCAATAGTACTGATGAGACGCTTATCAGATCGACTCAGCTATCCTCATCA
AGCTCAGTCGATCCCCCCACCCAGTCGATCTAGCCTACATGCGCCGCATATAGTCGTCGTCGGTC
GCCGGCCAGAACTCCCTTCCCCCCTCCCAACTCTATTTCTCTTATTGCACCAACAACCGCGGGTA
GGTAGCCGCCATTGCAGATATTTCATAGAGGGAGGGCCTAGGCGG


Right flanking sequence: Indices 459455 -- 459954
AGTAGGGGACTTGGGGTTGGTTTGTCGATCGATTGATCGATTGCAACAAGATCGATGCGTGTAGC
GGGGGCGGGTGGCCTACGGAAAGGGGGTACCCCCGATGGGTATGCGGGGGGGTAAGGGTTCGTAT
GCGATGCGGTGAACGAATGGGCGAAGCGGCCTTCCCCTCGCGCGTGTAGGGAAAGGCATATATTG
GTTGTTACCGGAGCCCCCTATCGAATGGAAACGTTGGGGTTTCCCAATGCTCTTCCACCAACGCT
CTCCACGTGCCGGTTCCGTTCCGTTTCGAGATACGCCACCCCGGGATGCTTTACTCCTAACCCCA
CGCAGGTTCCGAGACGGGGCTTAACCTGAGTCTCGGTTAAGAACGGCATCGTAGTTTCACACGGC
GCACGATTCCATGGATAGTTTCATTTGACTTCGTGATGGGGGACATAGCTTACGATCATCGGCTT
GAATCATGCCACTAGGCATTCGATTAAGACATTGCACAATGATTC



Found at i:461078 original size:18 final size:18

Alignment explanation


    Indices: 461051--461086  Score: 63
    Period size: 18  Copynumber: 2.0  Consensus size: 18

     461041 ACCCACACCC

                              
     461051 GGCTACACAGGGGAGGAT
          1 GGCTACACAGGGGAGGAT

                 *            
     461069 GGCTATACAGGGGAGGAT
          1 GGCTACACAGGGGAGGAT

     461087 ATATGGTTCA


Statistics
Matches: 17,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   17  1.00

ACGTcount: A:0.28, C:0.14, G:0.44, T:0.14


Consensus pattern (18 bp):   
GGCTACACAGGGGAGGAT

Left flanking sequence: Indices 460551 -- 461050
GAAACATAAATAGAGTCAACGACAGAACGGACAACGGAACTTCGATCGAGCTTTTTCGTACACGT
TCACTTGCATGCATCACATACACGAGTGCTCTCTGAACCGTGCAATAAGGTCACCCATGACACGG
CTCTCCCACAGGAGTTACCGGTTCTGGGTCGTCCCGGGGTGGGCCATGCATTTACAAACGAGTCG
ACGGCAGATGGGGGAGTGTTTCCACAACTAGGTGAGTGACGGAAGGTGAGCCCCCCAAAGCCCAA
CCAGCGCCATACCCTTTGTATCGGGGCCTTTTTGACGTCTATAGTACCCCCTACTTATCTAGACA
GAGAAGTCAACAATCCCCGACCCTACAAGTGAGCCGCCCTTCGGTGGATACCCCAGAACCCCCTA
TGTAACGGGGGCATGTAGAGTGAGTATGCGGGGGGCTACAGGCGCTCTTCGTGCGAGCCCTACCG
CAGCATATATATGTATGCGTATGCGGGGGGGTAGAACCCACACCC


Right flanking sequence: Indices 461087 -- 461586
ATATGGTTCAGTTGCGTGACGTATCAGGGAAGCACACTCAATGTCCTCATTACGCCGATTGGCTG
GCCTACCGTGAATACCTGAGCGTGAATACCTGGGGAGCGTTTTCTAACAACCAACGCTGCGCCCT
CGTTCACGCGATTTACGGTGAAGTCCTCGTTACTGACTCTCTTAAAGGACGCCCAGCCTCAACCG
GGCAGATACTAGACTAACGCGAGGGGAGCCCTACCTCTCCAAAGGTGAGAGCATGGGGCACTCAA
CGGGCACTGCTCTACGTCCACGTCGGTGATTGAGTTGCGTCCTCCAGTAATTAATCGCGTAGCGA
TCCCATGTCAGTGATATGAGGTAGTTCCGGTAGGGCGTACGTATGCGACGGAAGGATCTAGTATG
TATAGGCGCCGCTACGTATGCGTATGCGCCACACGCTTACTCACTACGAAACCAACACGTGTCAG
TAAGCTCAGTAATGGAGAGCATGGGGCATCGGCGGCCGCATCGCG



Found at i:469147 original size:27 final size:23

Alignment explanation


    Indices: 469127--469173  Score: 80
    Period size: 21  Copynumber: 2.1  Consensus size: 23

     469117 CGTACAATAC

                                   
     469127 GCCCACCATCCCCTTACCG--TA
          1 GCCCACCATCCCCTTACCGTATA

                                   
     469148 GCCCACCATCCCCTTACCGTATA
          1 GCCCACCATCCCCTTACCGTATA

               
     469171 GCC
          1 GCC

     469174 GGGTAGTTGC


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  21   19  0.79
  23    5  0.21

ACGTcount: A:0.19, C:0.51, G:0.11, T:0.19


Consensus pattern (23 bp):   
GCCCACCATCCCCTTACCGTATA

Left flanking sequence: Indices 468627 -- 469126
GGGGTCGTGAGACATTCGGATTAGCGTCCCAGGTCCTGCTATCGGTCATCGCCCCGGTAGTGGGA
TAACCTCGCCCTCTGGTTTTCACCTGTCGTTTTCGCCTATGTATACGGTGGCGGCACGATGCGCG
TTGCTATGTGGCGGCACTCGCACCGTGGTAAGTATCGTGGCTCTGGCGCATCTGGCCATTGCCGA
TGAAGTCTACCTTGTCTACACGTGGCACCCCCTGTACATAACCTCTTCGTCGTTACAGGGGGCTT
GTCCAGCAGGGAACCATATAAACAAAACTGCGTTTATAAACGATCATGTCAAGGTAGCTGCCCTG
CCGATGGTGATCTCGGATTCGTTCTCATACCGGTGACGCCCTGCGGCTCTACGGTTTTCCCTGAC
AACAGCGCCGTATTCGGGGGGCAACTGCAATATGCTTCTACTGAAACCCCCACACCCCCACCTTG
TTGACGTATTCGGGGTAAGCACAAATACCCCCTACCGTACAATAC


Right flanking sequence: Indices 469174 -- 469673
GGGTAGTTGCCGTTGTTGGTTCGCCCTACTTGCCGCTGGTCGGAACAAGGATCCTGGTGACTGCG
TGTCAATCAAATACGCCCTTCTGGTGATGCCGTCCCAGTTCTGGCTACTGACGTGGTTGCCTGTT
CAATCCTGGGTCACGAGTTGCGATGGCGAAATCCTGACGGTCAGGTCCAGTTGTTGGTCGTCTCC
CCGATAACGGAATAGCCTCACCCTCGTAACCGGTCGTAACTTGAGCTACGTCTTTGGCGCCCGCC
CCTTCGTATTAAGTAGTGCACGGGTTGGGTGTTGCATGGTCTAGACTGGCACCTCTCCCTAGAGT
CGGTCTGGGGTTACATCGGCTTGGTTACCGCGTCAGGAGCTCACCCGCTATCAGGCATACATAGG
TGACAACGTGTTCCCTTTCCGTGGTCTAGCAGAGATCCCATGCGCGAATGCTAGTCGGTCTGCCA
TGGGGACTGACTCGATGTTATCTGCAACTCTGCAATTTCAACTAC



Found at i:469153 original size:21 final size:21

Alignment explanation


    Indices: 469127--469168  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     469117 CGTACAATAC

                                 
     469127 GCCCACCATCCCCTTACCGTA
          1 GCCCACCATCCCCTTACCGTA

                                 
     469148 GCCCACCATCCCCTTACCGTA
          1 GCCCACCATCCCCTTACCGTA

     469169 TAGCCGGGTA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.19, C:0.52, G:0.10, T:0.19


Consensus pattern (21 bp):   
GCCCACCATCCCCTTACCGTA

Left flanking sequence: Indices 468627 -- 469126
GGGGTCGTGAGACATTCGGATTAGCGTCCCAGGTCCTGCTATCGGTCATCGCCCCGGTAGTGGGA
TAACCTCGCCCTCTGGTTTTCACCTGTCGTTTTCGCCTATGTATACGGTGGCGGCACGATGCGCG
TTGCTATGTGGCGGCACTCGCACCGTGGTAAGTATCGTGGCTCTGGCGCATCTGGCCATTGCCGA
TGAAGTCTACCTTGTCTACACGTGGCACCCCCTGTACATAACCTCTTCGTCGTTACAGGGGGCTT
GTCCAGCAGGGAACCATATAAACAAAACTGCGTTTATAAACGATCATGTCAAGGTAGCTGCCCTG
CCGATGGTGATCTCGGATTCGTTCTCATACCGGTGACGCCCTGCGGCTCTACGGTTTTCCCTGAC
AACAGCGCCGTATTCGGGGGGCAACTGCAATATGCTTCTACTGAAACCCCCACACCCCCACCTTG
TTGACGTATTCGGGGTAAGCACAAATACCCCCTACCGTACAATAC


Right flanking sequence: Indices 469169 -- 469668
TAGCCGGGTAGTTGCCGTTGTTGGTTCGCCCTACTTGCCGCTGGTCGGAACAAGGATCCTGGTGA
CTGCGTGTCAATCAAATACGCCCTTCTGGTGATGCCGTCCCAGTTCTGGCTACTGACGTGGTTGC
CTGTTCAATCCTGGGTCACGAGTTGCGATGGCGAAATCCTGACGGTCAGGTCCAGTTGTTGGTCG
TCTCCCCGATAACGGAATAGCCTCACCCTCGTAACCGGTCGTAACTTGAGCTACGTCTTTGGCGC
CCGCCCCTTCGTATTAAGTAGTGCACGGGTTGGGTGTTGCATGGTCTAGACTGGCACCTCTCCCT
AGAGTCGGTCTGGGGTTACATCGGCTTGGTTACCGCGTCAGGAGCTCACCCGCTATCAGGCATAC
ATAGGTGACAACGTGTTCCCTTTCCGTGGTCTAGCAGAGATCCCATGCGCGAATGCTAGTCGGTC
TGCCATGGGGACTGACTCGATGTTATCTGCAACTCTGCAATTTCA



Found at i:469749 original size:21 final size:21

Alignment explanation


    Indices: 469723--469764  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     469713 TAACTACCCC

                                 
     469723 CCCGAACCCCTAGTTACGTAT
          1 CCCGAACCCCTAGTTACGTAT

                                 
     469744 CCCGAACCCCTAGTTACGTAT
          1 CCCGAACCCCTAGTTACGTAT

     469765 GTATCATCAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.24, C:0.38, G:0.14, T:0.24


Consensus pattern (21 bp):   
CCCGAACCCCTAGTTACGTAT

Left flanking sequence: Indices 469223 -- 469722
GATCCTGGTGACTGCGTGTCAATCAAATACGCCCTTCTGGTGATGCCGTCCCAGTTCTGGCTACT
GACGTGGTTGCCTGTTCAATCCTGGGTCACGAGTTGCGATGGCGAAATCCTGACGGTCAGGTCCA
GTTGTTGGTCGTCTCCCCGATAACGGAATAGCCTCACCCTCGTAACCGGTCGTAACTTGAGCTAC
GTCTTTGGCGCCCGCCCCTTCGTATTAAGTAGTGCACGGGTTGGGTGTTGCATGGTCTAGACTGG
CACCTCTCCCTAGAGTCGGTCTGGGGTTACATCGGCTTGGTTACCGCGTCAGGAGCTCACCCGCT
ATCAGGCATACATAGGTGACAACGTGTTCCCTTTCCGTGGTCTAGCAGAGATCCCATGCGCGAAT
GCTAGTCGGTCTGCCATGGGGACTGACTCGATGTTATCTGCAACTCTGCAATTTCAACTACTTAG
TTCATGCGTCCTTCGCCTTGTACGGGGGCCGTTCGTAACTACCCC


Right flanking sequence: Indices 469765 -- 470264
GTATCATCAGTTGTTACGTGAAACTCGGCGTCTTGGGGCCCACTAACTGCACTGCACTGCACTGC
ACTGCACTGATATATGGCGGCGGCGGCAACAACAACGACAACCAACCAACCAACCAACAACAACC
ATATTGACGTGGGCGTGACGTGACGTGACGTGACGTGGGGGGCTGGCCGTTTATGTGCGCGTTGG
TTGAGTACGCCCCTAACGCAACACGTACTGGGAGCGGTAACCCCGTACATTGGGGTGGAGGGCTT
GCCGCGTACGGTATAACGAACGGTTTCTCCACGACCCTAAGCGACTCGCTCATAAGCCAGCCCGA
GCTGGCATTAGTACGAACGCACCATACGTAACGTCACGCAGGTCTGTCGTCCTAGGCGGCGAGGG
GAGAAGCAAGTGCGAATCGCCCACCCAGGACGCGCCGTGTTGGGCTGACGGTTGCTACACCGGCT
GTGTCTGGCACTAGTGCGAGCTGCGCATGACCAGCCCCGTTGATA



Found at i:469820 original size:5 final size:5

Alignment explanation


    Indices: 469810--469838  Score: 58
    Period size: 5  Copynumber: 5.8  Consensus size: 5

     469800 GGGCCCACTA

                                              
     469810 ACTGC ACTGC ACTGC ACTGC ACTGC ACTG
          1 ACTGC ACTGC ACTGC ACTGC ACTGC ACTG

     469839 ATATATGGCG


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   24  1.00

ACGTcount: A:0.21, C:0.38, G:0.21, T:0.21


Consensus pattern (5 bp):   
ACTGC

Left flanking sequence: Indices 469310 -- 469809
TGGGTCACGAGTTGCGATGGCGAAATCCTGACGGTCAGGTCCAGTTGTTGGTCGTCTCCCCGATA
ACGGAATAGCCTCACCCTCGTAACCGGTCGTAACTTGAGCTACGTCTTTGGCGCCCGCCCCTTCG
TATTAAGTAGTGCACGGGTTGGGTGTTGCATGGTCTAGACTGGCACCTCTCCCTAGAGTCGGTCT
GGGGTTACATCGGCTTGGTTACCGCGTCAGGAGCTCACCCGCTATCAGGCATACATAGGTGACAA
CGTGTTCCCTTTCCGTGGTCTAGCAGAGATCCCATGCGCGAATGCTAGTCGGTCTGCCATGGGGA
CTGACTCGATGTTATCTGCAACTCTGCAATTTCAACTACTTAGTTCATGCGTCCTTCGCCTTGTA
CGGGGGCCGTTCGTAACTACCCCCCCGAACCCCTAGTTACGTATCCCGAACCCCTAGTTACGTAT
GTATCATCAGTTGTTACGTGAAACTCGGCGTCTTGGGGCCCACTA


Right flanking sequence: Indices 469839 -- 470338
ATATATGGCGGCGGCGGCAACAACAACGACAACCAACCAACCAACCAACAACAACCATATTGACG
TGGGCGTGACGTGACGTGACGTGACGTGGGGGGCTGGCCGTTTATGTGCGCGTTGGTTGAGTACG
CCCCTAACGCAACACGTACTGGGAGCGGTAACCCCGTACATTGGGGTGGAGGGCTTGCCGCGTAC
GGTATAACGAACGGTTTCTCCACGACCCTAAGCGACTCGCTCATAAGCCAGCCCGAGCTGGCATT
AGTACGAACGCACCATACGTAACGTCACGCAGGTCTGTCGTCCTAGGCGGCGAGGGGAGAAGCAA
GTGCGAATCGCCCACCCAGGACGCGCCGTGTTGGGCTGACGGTTGCTACACCGGCTGTGTCTGGC
ACTAGTGCGAGCTGCGCATGACCAGCCCCGTTGATAATAGTGACGTTTGGCAACACGACCGGACA
GCCATGGGTGGGGTGTTTGCTTATTGTGGTGCGAATCCTCGTGGG



Found at i:470879 original size:32 final size:32

Alignment explanation


    Indices: 470838--470901  Score: 119
    Period size: 32  Copynumber: 2.0  Consensus size: 32

     470828 CTCACTTCGT

                                            
     470838 AGAACCTACGTACCTACCCGAATACCTTCCAA
          1 AGAACCTACGTACCTACCCGAATACCTTCCAA

                        *                   
     470870 AGAACCTACGTAGCTACCCGAATACCTTCCAA
          1 AGAACCTACGTACCTACCCGAATACCTTCCAA

     470902 CCCCCATATA


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   31  1.00

ACGTcount: A:0.34, C:0.36, G:0.11, T:0.19


Consensus pattern (32 bp):   
AGAACCTACGTACCTACCCGAATACCTTCCAA

Left flanking sequence: Indices 470338 -- 470837
GTACGTGAATAGCCTGTACGCGCCTCGTCCCTTGGTGTGTTGCAGGTTCAGGTACAAAACGCTGC
TGTCCATCTTGACAGGTAAATGTCTACTTGTCACTGCACGTTGTAACAAACCGTTACCTGGCATA
AACAGTTCGGTTGCAACAAGTGTTGCTGACCCGAAACAGGCATTACCGAAGCGAACAACTTGATC
TTGGCTCGTGGAGCCTAGGTCGAAAAGCGTTTGTTAACAAGCGTAACGTAGGAACAATGCGGTAT
CAGCGAAGGGCCAACTGCCAACCCTACCCTACACGGTGCCCGCCTATAGGTAAGGTAAATCTTGT
TCGACTTCAACCAAGACCGGTACTTCACAGACCATGAATAAACCACTACCTTGTGTGACGAGCAA
TCAACTTGTTATTCAACAATAACTTCCGGTGGCTACATGGGGTGGGGGCTCCCGCGCCGTAAATG
CGAAGGGTGTTATCTGAAGCTTGGCGGGTGTCTCACTCACTTCGT


Right flanking sequence: Indices 470902 -- 471401
CCCCCATATAGTGGTGTTTCACCCTACAACTAACTTGAACAACAACAACACCCAGACCGGCACCG
TTCGTTCCTATATAAGGCCTCCCCAACTACCACCAGCCTGGAAACTGGCATATGTAGTGCGGTGC
GGTCCCTCTTACGTGATTTATAACGAAGAAGCTCGCACCGTGCAAGCTCAGAACCCAACAAACTC
ACAAACAAGTAGCCAGAACAACGGTCTAGAAGTAGCCAGTGACCTGCTTGACGTAAGTACGAAAC
CACTATACCAACGAAGAAGTAAGATCACCCGTCGATGGAACAACCACATAGGAAGTCTGCCTGCC
CGAATCCCAGTGTGCCGTTCCGAATACACTAAAGCGACAAGCGCCAACTCGTTCGTATGTGGGGC
AGGAAGCCGGCTAGTGGATCGAGGCCTATAGAATCCTGTAGTCAACAGCCACGTATATTGCGCCG
TACAAGCGCCACCTACAGATGAAGGTCCATCCCGAACAGTTTACG



Found at i:476569 original size:20 final size:20

Alignment explanation


    Indices: 476544--476581  Score: 76
    Period size: 20  Copynumber: 1.9  Consensus size: 20

     476534 CCCGTGTAGG

                                
     476544 AGACAAGCACGAGATGGCTA
          1 AGACAAGCACGAGATGGCTA

                              
     476564 AGACAAGCACGAGATGGC
          1 AGACAAGCACGAGATGGC

     476582 GGCTATATGA


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  20   18  1.00

ACGTcount: A:0.39, C:0.21, G:0.32, T:0.08


Consensus pattern (20 bp):   
AGACAAGCACGAGATGGCTA

Left flanking sequence: Indices 476044 -- 476543
GAACACGCAAGTGCTGATACGTACCCTTCCTCTGCCGGCCCTCCGTCGTTCCCCTGGGTGGGGTT
ACGGGCGACAGTACAGGAGCGGGAACTCAGTACTGGAGTTGCCCATTGAGTAGTGGGCCAGGACC
CAGAACGGTAACGCCCTAGGGGGCCCTTCGGTTACCCGCCCCTAACACATTATTCCTACCGCACG
GCCTTTCTGCCCTTGTGGCAGCCCCTCATATCACGCCAACCAACAACGCCACAACCTTGATCGCC
CCCCGAATACACGGCACAGCCGTATGTGTATGTATACGCCGCTAGTTCGGTTCAGTAACGTATCA
GGTTGCGGGGAGGGGGGGTAGTGTGGTGGCTGTGGTGGGTGGAATAAGTAAGGTGGTAAGGTGGT
CCCCACATCGTTTACGCTGTAGCCAAAAGCTACATACGGTGTTAACCCCCTGTACACTCACTACC
TTACCCCCCAGGGGATGGTGGGCGGCCCAATACCGCCCGTGTAGG


Right flanking sequence: Indices 476582 -- 477081
GGCTATATGATATGGGGGGCCCCACCGTACGTCAATAAATAACGCGAGGGTGGGTGGTTGCGGTA
GTTGTTTTCGAAGACAACCTTACCACCCAAACCCACGGCTACATAACGGGGCCAGTAACAACCCA
GGGAGGTGGGGTACGAATACGAAACTACACAACTGATACCGCAACAACAACCTTACCACCCACCC
AACCCCGGTACGTATCAGCCCCAATACCGTTGGTGTGGGGGGAGAATACGTAAGGTACGTATCAG
GTTGGGGCGTGTAGGTTACCCTACATACGCGCGGTTGTTTGTGTTTTCTGCTGCTATCGCACATG
CACCAGCACTACCTTAACCGGCACTACACGGCGCGTCCAGCACTACTTGACCTCGTCCCCACACC
CCCCTACAAACGGCGTTATCTACCCGCCTGCCAGCGGTTATAGGGGTTAGGAGCAACCGGGACGG
GGGGTTAGTGTCGTAAGAGCAACCTGAGTTAGGAGCAACCGGGGG



Found at i:481188 original size:15 final size:15

Alignment explanation


    Indices: 481168--481197  Score: 60
    Period size: 15  Copynumber: 2.0  Consensus size: 15

     481158 AACGTGCTAT

                           
     481168 CAGTCAGTGTTGGAG
          1 CAGTCAGTGTTGGAG

                           
     481183 CAGTCAGTGTTGGAG
          1 CAGTCAGTGTTGGAG

     481198 GAGGATCAAT


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.20, C:0.13, G:0.40, T:0.27


Consensus pattern (15 bp):   
CAGTCAGTGTTGGAG

Left flanking sequence: Indices 480668 -- 481167
ACATAATTCACCCTCCTAGTTGGCTTGTATCAGTGGCTCGGTCCCAACTAGTTGGATTTATTTCC
TTCCATAGTTGGATTTGTATCAAGCCAGTTCGTAAGGCCGAAGGAGTTGTTTGTGTCTTCGAATG
AGCGCACTATCATTCCTCGATCAAGCATCAGGTAAGGGGTCACATCAACAGCATCGGGGTAAAGC
CGCCCATTCCGCCCCTGTAGACGCCGCCCCCGTACAAGGCCCCACATTGACGTTCTGTGTTCAAC
ATACGATCAACAGCATCGGGCATCAGATGATCAACAGCACCAGGCTAGGCCCCACATTGACGTTC
TGTATTCAATTCACGATCAACAGCGTCAGCCCTACGGTAGGGGGGTACCGGGGTTGTACGGGGGG
GTAGTGTACGGAATGTTACGTATCATTACAAAGGCACCAGGCGAGGCCCCACATTGACGTTCTGA
TTTATAAACCATCAGTCTACGTATGTTGCAAGCAGAACGTGCTAT


Right flanking sequence: Indices 481198 -- 481697
GAGGATCAATCCGCTCGATTATGATACAGAACCGATCAATGACACGCTTCATCAATAACCCAATA
ACGGTACACCGCATAACGGTACAATAATGTGGGCGCCCTCACCTCACCTCACCTCACCGTCAATA
ACAACACAACACAACACTCAGCTCAGTTATTGACGGTGGGGCTGAACATTCATGGATTCAATAAC
CGTGAGCGGCCAGCCCAGAAGACGCTCGTACCTTGCTCGGAACCGCCCATGTTGCAGTTTATGGT
GGGCAGGGTTATATAGAGAGGCCGGGGTGGGCTCGTCAACTCGTGATTCTAGGGGCAGCAACTGT
GGGGGAAAGGGGTACCCCCGAAGTGGGCTCGTCAACTCGTGACTCTAGGGGCGGCGAACTAGCCA
ACAACTACGCCCATGTAGCCGGGACAGGGGTTGGTGGTAAGGTAAGCCCCGCATATAATCCCCGC
ATCATATAATATAGATATATACGCCGGGGTACCCCCCTTTGGTTG



Found at i:483096 original size:22 final size:22

Alignment explanation


    Indices: 483070--483114  Score: 81
    Period size: 22  Copynumber: 2.0  Consensus size: 22

     483060 GAGCCTTGTG

                    *             
     483070 GGATCCCGGTATCAAGGCACGT
          1 GGATCCCGATATCAAGGCACGT

                                  
     483092 GGATCCCGATATCAAGGCACGT
          1 GGATCCCGATATCAAGGCACGT

             
     483114 G
          1 G

     483115 TAGTCGTCAT


Statistics
Matches: 22,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.24, C:0.27, G:0.31, T:0.18


Consensus pattern (22 bp):   
GGATCCCGATATCAAGGCACGT

Left flanking sequence: Indices 482570 -- 483069
AAGGGCTGCTAGCCGGAAATCCACCTCCAGACAAGTTCTCACAACAGGTAGCAGAACACCACTTA
GATAGGCGCAAACACTGGCGAACACCACGGTGCGCTCATTGAGCTTATTGGTTCCTATCCCTATC
CCCGTACACGGTGCGCTCATTCTTCGAGTGAGCCCTATCCCTATCCCCTAAGTAAGTCTCTATAG
TGGGTGGGGTAGGCGTGGTTGGTCGTGGTCTGGTGCAAACACCGCAAGGTTCGTAGCCAAGGCGT
ACTAATACGTCTACTATTACCGTACCGTACATAACACTACACGTAACTATTTCGTAGACAGTAAG
GCTCCCAGTTCCGTGAGAAGGAAGCAGCGCTATCAGGGGGGAAGGCCTCTAATGCGAATAGGATG
TCGTCAGCTACACGTGCGAAACCCTTGCGCGTGACCTCTCGCTTCGATCTGCCAGTCCAGGTAAA
CCCGGTATACATTCTGAAGGATGGGGGATATTGGTGAGCCTTGTG


Right flanking sequence: Indices 483115 -- 483614
TAGTCGTCATCCACGTCGTTACTGGTTTATCCACCGCTTGATGGTTGGAACTTTGTAGTTGCGTT
TCACCGTATATAATCCCCGGCGGACTGCTGATCTCTTTCAATTGTCCATGTTGCACGTCGTTACA
GTTACCCATGTAACACGTCGTTACCTGCTACGGTATGCTGCTTGTTTAAAACCAAGACTGCTCAC
GCGGCTCCCGAGCCTCGGCGGCAAGAATGGCGCCCGGTCGACGCCTCCGGCTGGGCCCTGTGAGG
AGCCCACTGGAAAAAGCACACAGCCGCCTACCCCGATTCCTAGTGATAGTGACTTAACACTAGAC
GCAGTTATGGATAAGGCAACTACTCGTGGACCTTCCTCGCACCCCTATTTCGTTTATGACAGGAC
TACTCGAGAGTTGCTGGCTTACGGCTTCAGTTCTATGACGCTCAAACATTGCAACAAATGGTGGC
TACAGTACTTGGAGAAAACTGCCAAGTCGAACTGCTCACAAGCAC



Found at i:484499 original size:25 final size:25

Alignment explanation


    Indices: 484468--484517  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

     484458 AACCATGAAC

                                     
     484468 CGTATCAGTATCATGTGCGAAGGAA
          1 CGTATCAGTATCATGTGCGAAGGAA

                                     
     484493 CGTATCAGTATCATGTGCGAAGGAA
          1 CGTATCAGTATCATGTGCGAAGGAA

     484518 AGAATCGTTG


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24


Consensus pattern (25 bp):   
CGTATCAGTATCATGTGCGAAGGAA

Left flanking sequence: Indices 483968 -- 484467
CTAACTGGTTCCCCTGGTAACGTCGTACCCATGGTTACCCTGTCTCCTCTTCAACCAAGAAAACG
AAAGGCCGAAGGTTCTGATGCGGCCGGATTGAATCTCTCTCCGTCTCCCCTACCTGGGCTTCCAG
CGGTCCGTGGTACCTTCCCCTCGCCTTCCTATGGAGTGGACGGCCGCATCGTGGTGCTGCTCAGA
GGGTCCGTATGGCGAAAGCTGCCCGGGGCGATCACCGGATCGTCACCGTGCGGTAAGTGCCCCAC
CGAATCGATTCGTTCTCTTCATGCGCCCCCTTCATATGCGTGGTTTTTCCTCGACCAACCGACCA
TCCTTACGTGAACACCCGAACCACGGATGCTCCAATCGGATCCCTAAGTACCAGATATACCAAAA
CCATCCAACCATCAGGGGCGGTTATTGAGGTGGGCCGTCCCGGTCAGTCGCTTTCACTTGTGATC
GGGCGCACCGTTGACGATGAGCATACACCGTACTGAACCATGAAC


Right flanking sequence: Indices 484518 -- 485017
AGAATCGTTGGTAACCTTGTTTCCACACCACATATATGAAAGAAATGGCGTTATATAAATCAATC
ATCGCTGTCACGTTTTGGAATGTTCTGCATGCAGCCCCACATAACGTAACGCCGCGACAACCGGC
ATAAAGTAAGGAAATGATGTGCCGGCTTCTTCTAGTATCAAGCAATGTTAGTTGGAACATGCGGT
AACACGGCTATGTATTGCACTTTCTCCAGATTCCCGGAAGGAACCTATCTGGCTCACCTCCTATC
AAGTAAGCGGGATGTGCAAGTACGGGTGCTTAATCCACCACCACAACCCGCCCCACTGTACGGTA
CGGGGTAGGGTAGGGTAGGGTAGGCGAAACAAGGTTTCGAAGTCCGGGGTAAGACCCGGCTACAG
GGGATTTTCAGGAATCGATAAACCAGTCGGCCCCACCCCCACCCCACCGTGCGTCAAACCTACTG
TGCTGGGTGGTGTTTCGCATCTTGTTCCGGTACCAACGTTGTTGA



Found at i:490625 original size:54 final size:57

Alignment explanation


    Indices: 490543--490657  Score: 182
    Period size: 54  Copynumber: 2.0  Consensus size: 57

     490533 TTATCTAACG

                                                                     
     490543 GAAGGCAGAGCACAGATTACCTCCCACTTG-CGACG-C-CCACCCACCGTACACGTA
          1 GAAGGCAGAGCACAGATTACCTCCCACTTGTCGACGCCACCACCCACCGTACACGTA

                                                                        
     490597 GAAGGCAGAGCACAGATTACCTCCCACTTGCTTCGACGCCCACCACCCACCGTACACGTA
          1 GAAGGCAGAGCACAGATTACCTCCCACTTG--TCGACG-CCACCACCCACCGTACACGTA

             
     490657 G
          1 G

     490658 CCTTCGCGCT


Statistics
Matches: 55,  Mismatches: 0, Indels: 6
        0.90            0.00        0.10

Matches are distributed among these distances:
  54   30  0.55
  57    5  0.09
  59    1  0.02
  60   19  0.35

ACGTcount: A:0.27, C:0.39, G:0.20, T:0.14


Consensus pattern (57 bp):   
GAAGGCAGAGCACAGATTACCTCCCACTTGTCGACGCCACCACCCACCGTACACGTA

Left flanking sequence: Indices 490043 -- 490542
AAGGAAGGTAGGTGCTAGGCCTTACCTGAGAGATGTCTGAACCTGACCTCCGATAGAGGCAGCCC
GTTGGAAGAGGTCACCTTCGACAACTCAAGAAGGGGCGACACCTCTCGAAGCCCGTCTGCCGATT
AGATAGGGGTTAGTTATCTGATGAACATCTCGGCTCTCAGCGCGACTGAAGCTGCATCCTTGACG
GGGAGTGAGGCGGGCGGCCAATTCGGGATAAGTTGAGATCGGCAAACTCCACTGTGGAGGCAGCT
CCCCACCACTGAGCTCGCTTTATCGAAGAGCGAGGAAGGGATCGTGGGGCAGCACGAGATGCGAT
CAGAATCCCGTCGTTGATCTGCGCCGCACTGCGAGGAAGGCAATTAGTGTGATAGAGCAGATGAG
GTGACCACACGGAACAATCACTGCAACCGAAGCTACAGCTGGCCACTAGGTGTTATGCTGAAAGC
GCCTCTGCCCTAGCTTCGTTCTAGAGCAACTTTACTTATCTAACG


Right flanking sequence: Indices 490658 -- 491157
CCTTCGCGCTCGGATCGTGACACGATGCACACGCATCTTCACTGATACTAACTAGAGCAGCCTTA
TCTATCTTATTTGACGTGGTTGTGGTCGGTAACAGCGCATAGCAGAAGTATCAGGCGTTACACGC
GCGCACCGATTCGTTGACGCATCGGCCGTCGTCCGTCATCGGGAGAATATGATGACGCTCCCGAT
GACTCGTTTCGAAAGGCTGGTTCTATTGGTCTGACTTGCCCAGCGAAGTACAGGGGACTCCGTGA
GTTTATTTATACGTAGTTATTGCTCCTATTGCCACTTACCCAACAGCTTTCGCACATGCTTCTCT
TCTTCATGATAAGATCTGCGCACGTACTAGTAGGGGTAGAGCCATCCTGGATCGAGTTCTCTCTC
TACATGGTAGTAACAAAGTTTGATAGTTACGGGACCCTTGTTCCGCTGGTTGGCTACCGGTTATG
ACAAGCTATTGGTATTTGCGAATGATGCATTGTGAGTCATCTCGG



Found at i:491903 original size:16 final size:16

Alignment explanation


    Indices: 491882--491913  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

     491872 ATATAATACT

                            
     491882 GCCCGCTGCTGTGGGC
          1 GCCCGCTGCTGTGGGC

                            
     491898 GCCCGCTGCTGTGGGC
          1 GCCCGCTGCTGTGGGC

     491914 ATGTTCGGGG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.00, C:0.38, G:0.44, T:0.19


Consensus pattern (16 bp):   
GCCCGCTGCTGTGGGC

Left flanking sequence: Indices 491382 -- 491881
AGTATATTCGTATCCTTCATTGTCTCTTTTCTGAACATTGAGGTAGGCGTTCACTAGGCCAAGGG
TGAAACGGTCGATGCCGAATCGCTGCGAGGTCATCAAGAGTTGGGTGTGGATGGGCCGGATACAC
CAGTGGAAAGACACAGGCTGGAATCAACATGTTATAACCTGGTGAATACCCCGATTGCCAATTGA
TCAGACTAATCGCAGGGAATAGCGCTACATGGTTGGCAAGGTTCTTCACAAAGGGGTGTTCCTGC
GCCCTCTCAACACCTATCCTATCCTATCCTAGCAGTGAAGAGCTCCGTGGTCTTGAGCTCGACAC
TGCAGAATGCTCAACGACCGGCTTGGCTGCCCCTCCCCATTGACGTAACGCAGAGCGAGCTCCGG
GCCGGAACTTACCTAGGACGCTCAGGACCTTTCCTGAATCAAAACACTTCGGGCGGGCTTCTTCT
CCCTTCCCCCGTAATTTGTGTGATATACGTGCGTGATATAATACT


Right flanking sequence: Indices 491914 -- 492413
ATGTTCGGGGTTACGCCCGTCACAGGGCTAACTCCGCAACCACATGGGCCTAGTATACGTGTGAC
AGTAAGCACCTCTTAATTGTTCCGCGGAGAGAGATCCGAATGAACTGCCCGCCCTAGTACTTGCC
ATTGGCCCCGAGTCCCCACGTCCGCTTTTCCCCCCGGCTGGCCTTCTGAAGGCATGACGGAGGTA
AATGGGGGCCAAAATCACCCACCTTCATTGGCGAGGGAGGTTTTGTCTTTTTGGGAATATGCTGT
TCCCACCGCGCTCACGGCCCGGCGTGCCCCCCGAAACCGGGGCTTAGTTAGTGGGGATTATCCCG
TTCCCTGGTCAATAGTTGTATCAGGTTGGATGTGGAATCTACTCCACGAGGAGCGGTACGGACGT
AGACGGTATCATATCATCACGACCTCTCTCTCTTTCCGTACCGCTGGGGATGCTTAACGCCACTT
CGCCAACTGGCCTTACCTGCGGTGAAACCATCTCTCAGTGTGGGC



Found at i:493736 original size:28 final size:28

Alignment explanation


    Indices: 493704--493759  Score: 103
    Period size: 28  Copynumber: 2.0  Consensus size: 28

     493694 GCATATTGAT

                       *                
     493704 ACCGTAAGAACTAGACACACAAACAAGG
          1 ACCGTAAGAACCAGACACACAAACAAGG

                                        
     493732 ACCGTAAGAACCAGACACACAAACAAGG
          1 ACCGTAAGAACCAGACACACAAACAAGG

     493760 TTGCGAGGAA


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  28   27  1.00

ACGTcount: A:0.50, C:0.27, G:0.18, T:0.05


Consensus pattern (28 bp):   
ACCGTAAGAACCAGACACACAAACAAGG

Left flanking sequence: Indices 493204 -- 493703
CTATACGCTGCAGGCAACTCGTAGCTCAATCGGCGCCTTACTCACGTCGCTGCGGGTACCCTATA
GCCACATGCCCCCGCGAAGCTGCATGCCCCTCCCCTCAGTCGCTGGGTGGGCGGCTTGGACAACA
AAGATGTTGGAAATCGACTTCGTCTCCCATATCACCTACTTTCTTCATATATGCGGGACCAGGGG
TTAGTAGGAACATTGATAAAGATGCTTGTAACGGCAGTCGATGAAACGAACACCTTAGAGGAGAG
TTTGTTCCCAGCCCGCTAGGCGATATCACGACATACCCAACCCATGTTTCCTCCCCAGCCTCGCT
AGACTGAGCACCTACATAGGGGGTCCCTTCTCCGAAGGGTTTCGAGGTGTTGATCCGGCCGAGCC
CAGCGGCCCCCACCGTACGTCAATAAATAACGCGGATAACCCCGAACAGCAGTTATATATGAGTG
TGGGGGCGGCGTGTTGTTGGACGGAAAGAGGTGCTGCATATTGAT


Right flanking sequence: Indices 493760 -- 494259
TTGCGAGGAAACCTGCGTGGGCAAGAGCGACTGGCATCATCCGAAACTCATTCCAGTCTGTTAGA
GCAGCGCGTCACCTCAGCATGTCACCGTACGATATAGAGTATCCCCTTTGTTGAGGGTAGCTGCT
TGTTGAAACATACTTGGGCATTTGTAACGAGAGAATGGGTAGGGTATTGGGTAGTTAGATGACTC
ATCACACATCACGAAGCGCTTGAAGTTCGAAACATAAACGCCATGATGCCTTTGTATGTACGAAC
AGCTAGTACGTACTCAGTGGTTGGGTCGCTGCTGCCTGCATACGTACGGTGAAACGCGCGATAAC
CTCCCTCACCTCACATTGGAGAGAAAGGGAGAGAAAGAGAAAGATAGATCCATTGATCAACTAGT
CGCAGATAACATGGCGTACATCTATCAATCAAGATAACGTAGAAAGATCAAGTGAACTGAGTGAG
CTCGCGCGATAACCTCTATGAAGAATGTGGCTCACGCTGCTAACC



Found at i:494377 original size:39 final size:39

Alignment explanation


    Indices: 494323--494400  Score: 156
    Period size: 39  Copynumber: 2.0  Consensus size: 39

     494313 CATTATATAG

                                                   
     494323 AACGGTAGGGGTAGGTAGTTCGGTGGGCGGCTAAGGAAT
          1 AACGGTAGGGGTAGGTAGTTCGGTGGGCGGCTAAGGAAT

                                                   
     494362 AACGGTAGGGGTAGGTAGTTCGGTGGGCGGCTAAGGAAT
          1 AACGGTAGGGGTAGGTAGTTCGGTGGGCGGCTAAGGAAT

     494401 CGCAAGGTTC


Statistics
Matches: 39,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  39   39  1.00

ACGTcount: A:0.23, C:0.10, G:0.46, T:0.21


Consensus pattern (39 bp):   
AACGGTAGGGGTAGGTAGTTCGGTGGGCGGCTAAGGAAT

Left flanking sequence: Indices 493823 -- 494322
GAGCAGCGCGTCACCTCAGCATGTCACCGTACGATATAGAGTATCCCCTTTGTTGAGGGTAGCTG
CTTGTTGAAACATACTTGGGCATTTGTAACGAGAGAATGGGTAGGGTATTGGGTAGTTAGATGAC
TCATCACACATCACGAAGCGCTTGAAGTTCGAAACATAAACGCCATGATGCCTTTGTATGTACGA
ACAGCTAGTACGTACTCAGTGGTTGGGTCGCTGCTGCCTGCATACGTACGGTGAAACGCGCGATA
ACCTCCCTCACCTCACATTGGAGAGAAAGGGAGAGAAAGAGAAAGATAGATCCATTGATCAACTA
GTCGCAGATAACATGGCGTACATCTATCAATCAAGATAACGTAGAAAGATCAAGTGAACTGAGTG
AGCTCGCGCGATAACCTCTATGAAGAATGTGGCTCACGCTGCTAACCTAGTTGTTACTAACTAGA
ACAGGAACAACACCGGAGTGGTACAACACAACCAACATTATATAG


Right flanking sequence: Indices 494401 -- 494900
CGCAAGGTTCAGTGGCTTTGTAACCAACAAAGAACGAATCACCACCATACCATACCATACTATAC
CATATGAAGCAATAGTTGCGGGCGCATCATACCATACCATATGAAGCGATCGTTGCGGGCGCATC
GAGTTATCCCAGAACCGGGCCCGGGTAAGTAGGCGCTTAACCCGCACTCACTTGCCGTTTACCGA
GAGTCCATCAAAACAAGGGCACATTGACCCCTGACTCGGTGGGCCCTGAAAACAGGCTCACCATG
TGCCGTACACCAGAGAGTCAAACTCAAACTCTGATACTAACCACACGAACCACCGCCCCACAGTT
CGGCCCACAACCGCTACTTGAGGTGCAATACTGCTTCAACGATACCATATCAACAAAGGGGGGTT
GGAAGGTGGGTTCTGTGACTTTCAGTACCAACATCCCATTCCATGCAACACGCGCTCAGTCACCA
GCGTCACTTTTCGAATACTGTGACTTTCAGGTCATGCATTCGACT



Found at i:494506 original size:37 final size:37

Alignment explanation


    Indices: 494456--494530  Score: 123
    Period size: 37  Copynumber: 2.0  Consensus size: 37

     494446 CATACCATAC

                 *                               
     494456 CATACTATACCATATGAAGCAATAGTTGCGGGCGCAT
          1 CATACCATACCATATGAAGCAATAGTTGCGGGCGCAT

                                *  *             
     494493 CATACCATACCATATGAAGCGATCGTTGCGGGCGCAT
          1 CATACCATACCATATGAAGCAATAGTTGCGGGCGCAT

             
     494530 C
          1 C

     494531 GAGTTATCCC


Statistics
Matches: 35,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  37   35  1.00

ACGTcount: A:0.29, C:0.25, G:0.23, T:0.23


Consensus pattern (37 bp):   
CATACCATACCATATGAAGCAATAGTTGCGGGCGCAT

Left flanking sequence: Indices 493956 -- 494455
TCACACATCACGAAGCGCTTGAAGTTCGAAACATAAACGCCATGATGCCTTTGTATGTACGAACA
GCTAGTACGTACTCAGTGGTTGGGTCGCTGCTGCCTGCATACGTACGGTGAAACGCGCGATAACC
TCCCTCACCTCACATTGGAGAGAAAGGGAGAGAAAGAGAAAGATAGATCCATTGATCAACTAGTC
GCAGATAACATGGCGTACATCTATCAATCAAGATAACGTAGAAAGATCAAGTGAACTGAGTGAGC
TCGCGCGATAACCTCTATGAAGAATGTGGCTCACGCTGCTAACCTAGTTGTTACTAACTAGAACA
GGAACAACACCGGAGTGGTACAACACAACCAACATTATATAGAACGGTAGGGGTAGGTAGTTCGG
TGGGCGGCTAAGGAATAACGGTAGGGGTAGGTAGTTCGGTGGGCGGCTAAGGAATCGCAAGGTTC
AGTGGCTTTGTAACCAACAAAGAACGAATCACCACCATACCATAC


Right flanking sequence: Indices 494531 -- 495030
GAGTTATCCCAGAACCGGGCCCGGGTAAGTAGGCGCTTAACCCGCACTCACTTGCCGTTTACCGA
GAGTCCATCAAAACAAGGGCACATTGACCCCTGACTCGGTGGGCCCTGAAAACAGGCTCACCATG
TGCCGTACACCAGAGAGTCAAACTCAAACTCTGATACTAACCACACGAACCACCGCCCCACAGTT
CGGCCCACAACCGCTACTTGAGGTGCAATACTGCTTCAACGATACCATATCAACAAAGGGGGGTT
GGAAGGTGGGTTCTGTGACTTTCAGTACCAACATCCCATTCCATGCAACACGCGCTCAGTCACCA
GCGTCACTTTTCGAATACTGTGACTTTCAGGTCATGCATTCGACTATATGCGGAGAAGAGACATT
TGTGATAGATACTTATCGGTGTCGCGTCGAAAGGAGCTAGCAGCAGTCGTCGTCGAGATGTTGTA
TAAACAAGCAAGCCGCTCACTCTAGCGTTACTTAACCCACCCGGC



Found at i:496368 original size:18 final size:18

Alignment explanation


    Indices: 496345--496424  Score: 90
    Period size: 18  Copynumber: 5.0  Consensus size: 18

     496335 TATATTATAT

                              
     496345 CGCGCACCTCACTTGGAG
          1 CGCGCACCTCACTTGGAG

                              
     496363 CGCGCACCTCACTT-G-G
          1 CGCGCACCTCACTTGGAG

                              
     496379 -G-G----TCACTTGG-G
          1 CGCGCACCTCACTTGGAG

                              
     496390 -GCGCACCTCACTTGGAG
          1 CGCGCACCTCACTTGGAG

                              
     496407 CGCGCACCTCACTTGGAG
          1 CGCGCACCTCACTTGGAG

     496425 ATCATTCCCT


Statistics
Matches: 54,  Mismatches: 0, Indels: 16
        0.77            0.00        0.23

Matches are distributed among these distances:
  10    6  0.11
  11    3  0.06
  12    1  0.02
  14    1  0.02
  15    1  0.02
  16    9  0.17
  17    2  0.04
  18   31  0.57

ACGTcount: A:0.15, C:0.36, G:0.30, T:0.19


Consensus pattern (18 bp):   
CGCGCACCTCACTTGGAG

Left flanking sequence: Indices 495845 -- 496344
CATTCCGGTGCTTCAACACCCTACAGCCCCACCCAAGGCAGCTCATACAGAGGACACAAACCCCG
TTAGCGGTTGTGCTTCAGCAGGGGGAGTAATCAGACAATTCATTCTACTAACGTCACCGTATCTG
AAGCTCGAATTCTCAGTCCCTTCTTCTGCAGGTCACCGCGACGAGGCTTCGTATGGAATCAAACT
ACATATGCTACCGGTTAGTATCTGGGTCGCTAGGCCTATTCACAGCTTGTTGCTTGGGGGGAAAT
GTTGTTCCACTATGTTGGTTTACCGTAGCTCCATACCGGGCACACGGTAGAAACCGCATGAGCTC
ACCATGTAGGCGTATAGGTAAACTCAACCGTAACTAGTTAATGAGCCGGCTACATACGCAGCCTG
ACGACAACGCTTCCCACTAGCAGCGGGTCGCGGGTAATGCCTGGGTGGGTGCTTTATAGAAAAGG
GAGCCAGTTACGTACAATGGCCCGCCTGCGTAGTATATATTATAT


Right flanking sequence: Indices 496425 -- 496924
ATCATTCCCTCAGGTTCGTCGGAAAAGGTACGCCAGTTTCAACAATCCGCCCTAGCCTTGTACTC
CTGTTAGTATCTATCCTATACCACCCACCGTACGATGCATATGCAGCCAGGTAGGTCATGTCAAC
ATACTCTCCTCTGTCAGTTACGTACAATGGCTTTCAGCATTCCCATGAGCTTTCGACGTAAGTCA
TTCGGTTCCCCGCAGCCGCAAGCATCATGTGTACGCAGCAGTTCCTGCCTTTTGTTACCCTGGTG
CTTCAGTCTATTCCAGATTTGTTCGTGCAAGCGAGACAGCATTCCTAACCAGTCATGCCCCTTAG
TCCGCCATGGTATCGATCAGTTGCCTACTCGCTTCCCACCGGCTAGTGCTGTAGCGAGGAAATTC
CAAGTGACGGTTGGGGGTTGCGCAAGCATTTGGGGAGGGCATAAAGCACCGCATGAAACAACATT
GTTCCTTTATGCATGGCATTCTGGTTGCTAGGTAACCTCCCATCA



Found at i:496400 original size:26 final size:28

Alignment explanation


    Indices: 496353--496404  Score: 90
    Period size: 26  Copynumber: 1.9  Consensus size: 28

     496343 ATCGCGCACC

                                        
     496353 TCACTTGGAGCGCGCACCTCACTTGGGG
          1 TCACTTGGAGCGCGCACCTCACTTGGGG

                                      
     496381 TCACTTGG-G-GCGCACCTCACTTGG
          1 TCACTTGGAGCGCGCACCTCACTTGG

     496405 AGCGCGCACC


Statistics
Matches: 24,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  26   15  0.62
  27    1  0.04
  28    8  0.33

ACGTcount: A:0.13, C:0.33, G:0.31, T:0.23


Consensus pattern (28 bp):   
TCACTTGGAGCGCGCACCTCACTTGGGG

Left flanking sequence: Indices 495853 -- 496352
TGCTTCAACACCCTACAGCCCCACCCAAGGCAGCTCATACAGAGGACACAAACCCCGTTAGCGGT
TGTGCTTCAGCAGGGGGAGTAATCAGACAATTCATTCTACTAACGTCACCGTATCTGAAGCTCGA
ATTCTCAGTCCCTTCTTCTGCAGGTCACCGCGACGAGGCTTCGTATGGAATCAAACTACATATGC
TACCGGTTAGTATCTGGGTCGCTAGGCCTATTCACAGCTTGTTGCTTGGGGGGAAATGTTGTTCC
ACTATGTTGGTTTACCGTAGCTCCATACCGGGCACACGGTAGAAACCGCATGAGCTCACCATGTA
GGCGTATAGGTAAACTCAACCGTAACTAGTTAATGAGCCGGCTACATACGCAGCCTGACGACAAC
GCTTCCCACTAGCAGCGGGTCGCGGGTAATGCCTGGGTGGGTGCTTTATAGAAAAGGGAGCCAGT
TACGTACAATGGCCCGCCTGCGTAGTATATATTATATCGCGCACC


Right flanking sequence: Indices 496405 -- 496904
AGCGCGCACCTCACTTGGAGATCATTCCCTCAGGTTCGTCGGAAAAGGTACGCCAGTTTCAACAA
TCCGCCCTAGCCTTGTACTCCTGTTAGTATCTATCCTATACCACCCACCGTACGATGCATATGCA
GCCAGGTAGGTCATGTCAACATACTCTCCTCTGTCAGTTACGTACAATGGCTTTCAGCATTCCCA
TGAGCTTTCGACGTAAGTCATTCGGTTCCCCGCAGCCGCAAGCATCATGTGTACGCAGCAGTTCC
TGCCTTTTGTTACCCTGGTGCTTCAGTCTATTCCAGATTTGTTCGTGCAAGCGAGACAGCATTCC
TAACCAGTCATGCCCCTTAGTCCGCCATGGTATCGATCAGTTGCCTACTCGCTTCCCACCGGCTA
GTGCTGTAGCGAGGAAATTCCAAGTGACGGTTGGGGGTTGCGCAAGCATTTGGGGAGGGCATAAA
GCACCGCATGAAACAACATTGTTCCTTTATGCATGGCATTCTGGT



Found at i:497540 original size:50 final size:50

Alignment explanation


    Indices: 497481--497580  Score: 191
    Period size: 50  Copynumber: 2.0  Consensus size: 50

     497471 AGGAACCTTC

                                                              
     497481 ACTGTGGTTGTGTCCCTTCTTCCTCACATCCCCAACCGGTCGATCGCGTA
          1 ACTGTGGTTGTGTCCCTTCTTCCTCACATCCCCAACCGGTCGATCGCGTA

                                                        *     
     497531 ACTGTGGTTGTGTCCCTTCTTCCTCACATCCCCAACCGGTCGATGGCGTA
          1 ACTGTGGTTGTGTCCCTTCTTCCTCACATCCCCAACCGGTCGATCGCGTA

     497581 CTTATACCAT


Statistics
Matches: 49,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  50   49  1.00

ACGTcount: A:0.14, C:0.35, G:0.21, T:0.30


Consensus pattern (50 bp):   
ACTGTGGTTGTGTCCCTTCTTCCTCACATCCCCAACCGGTCGATCGCGTA

Left flanking sequence: Indices 496981 -- 497480
GTTGTGTCTCGTTAGTCCAACATGCAGGTCGTGCAATACGTCCATAACTAGTACAGAAGAGCCGC
CTAGCCGCCGTAGAAGGGCGGGCCGGTAATGGGTGCTTTCGTAGTTTCGTGAGCATTGTGAAGCG
GGAAGCTTTCCCCTACCCACTGAGGTGTAACTAGCATACAAAAAAGGAGGAATGTCCGAGGCTTT
CCACGTCGAGTAAGGCTAGGGCTGCTCCCGTTACACGGATCCTTCCCGCGTACTCTCCTGGGAGG
TGCATTGATCCTTCGCCCCACACGCACATATATATGTAGGTAGTTCAAAACATGTTGGGTCTTTG
ACAGTCAGTGCGGGGTTAGTCGGCGTATAGATCAGCTCCTCTTGAGAGCGGGGAAGGGATGGGGG
TCAGGGTTGTGGCCTCTTAACGTAGTGCGTAACCGCATATGATGCCTTTTCCATGTTGGACTGCT
GACCTTGAAACCAGGATCCTGAGCATCCGTTACGTAGGAACCTTC


Right flanking sequence: Indices 497581 -- 498080
CTTATACCATGCACTTTGTTCCAGGTTCCGGCATATACGCAACTCGTCCCAACCCCAAGGTGATA
GAGCCAGCACAGCTGATTCGTTGCCTTACCCGCATGGGCTGGGCATTTGATGCAGCGCAGGGTCA
TCTCGCCCCCTAGAATAACCACACTGGATAGAACGAAATAGGCGGCCTTGAGATGTTACCCCCGA
GCAGGTGTGGGGAATTACTCGGCTGTTTCTATCGGGAGGGCCACGTTCTCTACCATGCGGCCAGG
ACTCAACCAATAGCATTTCTGCATCGTGTACTGGTCAGGAAAGTACTGTTCACCGCAACTCCCGC
ACTTCGCTCACTGGTAAGCTGTCCCTTGGCACGTCTGGTTATCTTCCCCCCGGCAAGCCCCGAGG
GTGCTCAAGGCACGCTTCGTCATGTTGGCATCAGCGTCCAGCCTCACGCAAGTGCCCCAACTTCA
TACGTCACGTAGCCTTCCATGCAAAGCGCTCAATCCTTTGTTGGC



Found at i:498243 original size:22 final size:22

Alignment explanation


    Indices: 498215--498285  Score: 133
    Period size: 22  Copynumber: 3.2  Consensus size: 22

     498205 TCGCCTTGGT

                          *       
     498215 GGATAGTGAAGTGCTGTGGGTC
          1 GGATAGTGAAGTGCCGTGGGTC

                                  
     498237 GGATAGTGAAGTGCCGTGGGTC
          1 GGATAGTGAAGTGCCGTGGGTC

                                  
     498259 GGATAGTGAAGTGCCGTGGGTC
          1 GGATAGTGAAGTGCCGTGGGTC

                 
     498281 GGATA
          1 GGATA

     498286 ACCTCCTCAT


Statistics
Matches: 48,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  22   48  1.00

ACGTcount: A:0.20, C:0.11, G:0.45, T:0.24


Consensus pattern (22 bp):   
GGATAGTGAAGTGCCGTGGGTC

Left flanking sequence: Indices 497715 -- 498214
GCCCCCTAGAATAACCACACTGGATAGAACGAAATAGGCGGCCTTGAGATGTTACCCCCGAGCAG
GTGTGGGGAATTACTCGGCTGTTTCTATCGGGAGGGCCACGTTCTCTACCATGCGGCCAGGACTC
AACCAATAGCATTTCTGCATCGTGTACTGGTCAGGAAAGTACTGTTCACCGCAACTCCCGCACTT
CGCTCACTGGTAAGCTGTCCCTTGGCACGTCTGGTTATCTTCCCCCCGGCAAGCCCCGAGGGTGC
TCAAGGCACGCTTCGTCATGTTGGCATCAGCGTCCAGCCTCACGCAAGTGCCCCAACTTCATACG
TCACGTAGCCTTCCATGCAAAGCGCTCAATCCTTTGTTGGCATCACGGTGGGTTGCCACTCGGTT
TAGCTGACCGCCTGGCTGCATACAGGCTGCATACATATAGAAGTACGGTGGGTGGGCGGAAAACC
AACCAGCCCCGTGTCCGTTGCAGTCGCACATTTCATCGCCTTGGT


Right flanking sequence: Indices 498286 -- 498785
ACCTCCTCATGTGGTTACACGCACATGCCCCATATACGGTAAGGCGACCAGTGAGTCCAGAATAC
GTGCGGAAGGTGGGTGGTATCGGACAAGTGAAGCTCGTGGAAGCGTATATGCGGAAACGGTGGGT
GGTATCGGACAAGGTGAAGCTCGTGGGGCTCGTACCGCCCTTCCCTGGATTGAGCAAGTAACTTC
TGCTTCCCTAAGTAACCTATATAACATGTTGCACCATATAGAAGGACCTACTGGGGAGTTACCCT
TTACAAAGGTTGTATCCGTCCCGAGGGGCAAGACATGGTCCCATCTCGTGGTCACCGACTCATAA
AGCGCTTGCGTAAAGTGTGCCGTTCTCCACACCAGTAACGTCATTGTACGTTGCAGGTAGCTCGA
ACCAGGGTTCCCGCTTACCGTCGCACGCAGGCCCACGTTGTTGGGCCGGGCAGGTCGCCTTCCTT
CAGGTCCATACGCCATGGGAGTTGCCCGCAGGTTGTTATTTCAAT



Found at i:498867 original size:21 final size:21

Alignment explanation


    Indices: 498841--498882  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     498831 GGTATATTAT

                                 
     498841 ATAACACGTAGTCGGTACCTG
          1 ATAACACGTAGTCGGTACCTG

                                 
     498862 ATAACACGTAGTCGGTACCTG
          1 ATAACACGTAGTCGGTACCTG

     498883 GCCCGTTGAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.29, C:0.24, G:0.24, T:0.24


Consensus pattern (21 bp):   
ATAACACGTAGTCGGTACCTG

Left flanking sequence: Indices 498341 -- 498840
TCCAGAATACGTGCGGAAGGTGGGTGGTATCGGACAAGTGAAGCTCGTGGAAGCGTATATGCGGA
AACGGTGGGTGGTATCGGACAAGGTGAAGCTCGTGGGGCTCGTACCGCCCTTCCCTGGATTGAGC
AAGTAACTTCTGCTTCCCTAAGTAACCTATATAACATGTTGCACCATATAGAAGGACCTACTGGG
GAGTTACCCTTTACAAAGGTTGTATCCGTCCCGAGGGGCAAGACATGGTCCCATCTCGTGGTCAC
CGACTCATAAAGCGCTTGCGTAAAGTGTGCCGTTCTCCACACCAGTAACGTCATTGTACGTTGCA
GGTAGCTCGAACCAGGGTTCCCGCTTACCGTCGCACGCAGGCCCACGTTGTTGGGCCGGGCAGGT
CGCCTTCCTTCAGGTCCATACGCCATGGGAGTTGCCCGCAGGTTGTTATTTCAATAAGTAACCTC
GGATAGTTCGTAGCCTTTATATATGGAAACACGGCGGTATATTAT


Right flanking sequence: Indices 498883 -- 499382
GCCCGTTGAGGGCTACGTATCGGCTTCCCATTCAGGCAGTGAGCCAGACCCCACTCATCTCCTTC
ATGAGCGTAACTTGATCAGTTAGATAATGCTGCCTCCACCCTGGGTTTGGGAGAAGGGCAGGTGA
GCGGTGACAGAGGATAGAGGAAACCTACTCGCGTGCAAGCAGCTTACCATCTCGAATCAGGGTTA
CACAGCCTGCCAAGTGCGTAGGGGAAGTGTGGTGGGATTGTGTACTCGCATGCGGACCACGGCAT
TTCCGGATAACCCAGCCCCGCGTACGCATTGAGGATTTCCCCGTCGTAGGAAACACGATGGAGGA
CCGGCATGCGTCGAGGGAGTCATGGTTGCGTTATACGCGTAGACGATCCCCGTTGAGCAGCACTT
ACAGCACCACAATAGAAGAGTAGTCGCCAGAGACAAGGCGGGCTGAAGGGCTTCATGGCGTTTCG
TAACTGCACACCCAGCCACTCTATCGGAAGCCAACTACACCTCAT



Found at i:499871 original size:21 final size:21

Alignment explanation


    Indices: 499847--499888  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     499837 CCCACCCTAT

                                 
     499847 ATCTCTACTGCCACGCCCAGC
          1 ATCTCTACTGCCACGCCCAGC

                                 
     499868 ATCTCTACTGCCACGCCCAGC
          1 ATCTCTACTGCCACGCCCAGC

     499889 TCACCGGTCA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.19, C:0.48, G:0.14, T:0.19


Consensus pattern (21 bp):   
ATCTCTACTGCCACGCCCAGC

Left flanking sequence: Indices 499347 -- 499846
ACCCAGCCACTCTATCGGAAGCCAACTACACCTCATCACCGTGTAGCCTGCTTATATACGCAGTC
CTCCTTCACCCTTCGCTTTCCCCATGTACGTTCGCATAACGTACGAACTATCCTCATATCCGTTA
TTTGTAACCAATGGCTTTCAGTCTTCCAATGCGCCACGCGGGTCTACACACCGCCGCGTGCATAG
GCCAAGCAGCTGTTCCAACCTTCGCAAGAGCGATACTCGGGTGCTAGGGGTACGTCGATCCAATT
GGGTTAGCACAAGGGCGGCAGCCACCCTAGTCCGTTATGCACCGTTGTCCTAAGGGTAGAATGCA
TTTGCCTACTCCGTCACTTGCAACCATATAGCCCCAGCTTGATGGAAAATCCGACGCTTGGATTG
GGAGCAGCTACATCGTACAGAGGGTAGGGAAGGCGATGACACATCTTGAGTAATTGCACCACATG
GAGGCGCCCGGCACATCAGAGGAAATCCGTTCACCCCCACCCTAT


Right flanking sequence: Indices 499889 -- 500388
TCACCGGTCAACATTTCGAGTTCAAGTCTGTTGCACAACGTCGTATATAGTTGTTGGGATGGGTG
GGGTATTGAGTACAGACAAGCGATCGGTTCGAACTGTTACCTTGCGTCAAGCACAATTGAGGAGA
TAAGAGGAAACTGCCCTCAGGCAGCCCACCGAATCCATAGCATACACCGGACCGATGGTTGTATA
TAGGGGGGCTATACGTCCTTCAAGGTTGATGACCGTTAGTGAGTGGGTTGCCGGGTAGGCAACTC
ATATGGGAAGTGTAGTTTGTGCTTCGCCCCAGAACGCATGTGTCCGTTAGTGAGTGGGTTGCTCG
CATAACAGTTTAAATATGCAGGGGATGGATGCTATAGGATCAGTTCCCCAACAAGCGACATTGTT
GTATGTACGGGTTACGAGATCGCCTCCTTGCTTTCGCCACCATATAGACCTCCAATGACGTCGAG
TGGGGGCAGGCAAGGAACATTCATTTTCCCCTCCGTACATTCCGG



Found at i:500790 original size:12 final size:13

Alignment explanation


    Indices: 500763--500795  Score: 50
    Period size: 12  Copynumber: 2.5  Consensus size: 13

     500753 AGCTGCTTTA

                          
     500763 TGGTATGGTATGGT
          1 TGGT-TGGTATGGT

                         
     500777 TGGTTGGT-TGGT
          1 TGGTTGGTATGGT

                   
     500789 TGGTTGG
          1 TGGTTGG

     500796 GGTGCTCCTC


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  12   11  0.58
  13    4  0.21
  14    4  0.21

ACGTcount: A:0.06, C:0.00, G:0.48, T:0.45


Consensus pattern (13 bp):   
TGGTTGGTATGGT

Left flanking sequence: Indices 500263 -- 500762
AACAAGCGACATTGTTGTATGTACGGGTTACGAGATCGCCTCCTTGCTTTCGCCACCATATAGAC
CTCCAATGACGTCGAGTGGGGGCAGGCAAGGAACATTCATTTTCCCCTCCGTACATTCCGGTCGA
TTGCTCCGTCGTATCATACTCAAAGTGTCAAGGTTCCTCTATGTAGCAATCCTTCCCAACCGTCC
ATACTCAAGCTGCGTTTATAAGCACAGCGTATACGTGCGGGGTTACGAACATTGGCAGGACACTA
GATGCACCGCATGGTCGTCCCGTCCCCTAGAGGGAGGTCGCCGGGTATAACAGCCGAGGTCTGGG
AATGTGACACCAGAATAGGAGTGAACAATTCCTCCATTGTTCCAATGTACAGGGCAGAGTTACCC
ACCAGTAAGCCAGGACTCACACGGTGCATTTGGCTTCGTACGCTGGCAGGGGTGCCGACTACAGG
GAAGACGTGCCAGTTAGACGTCCAGACTGAGCACGAGCTGCTTTA


Right flanking sequence: Indices 500796 -- 501295
GGTGCTCCTCTATATTGCTGATACAGAGGCGCCGCCCGAAACGACCCCATACCATATATGTGATA
CTATACGGTGCGTCGTCGGGTGGCCCAGGCATCCATGAAGATGTTCCAGCCTGTACTGTTGTACA
CGAATCAATCCCTGCTATGTGATACTATACGGTGGTTCATTGCAAACGGTGAACAGCCTGCTGGA
CTCGGCGTGTTAACGGTGACATACGGTTTGTACTACGTGATAATGAGAAACCGACTGCCGCTTAA
CGAGTTCCCGGGTGGGGGGACGGTAACGGGCTAGGTAATGATATGGGGAGTAGCTGTATATTGGC
GTATGCCTCATCGGTCGTATAGTGTGGATGTGGCGATCTCGTACGTGTAGGCGTTCGTCTATATT
GTTGTGAATGTTTCTCGCCATGTCCCTTCGATCCTGTATGTTGAGCGAGAAAGGCGCCCGCCACC
GGCCACTCACGGGTGGGTGGGTATGGCCTAAGCGTTTCTATCAAC



Found at i:502675 original size:27 final size:27

Alignment explanation


    Indices: 502633--502687  Score: 101
    Period size: 27  Copynumber: 2.0  Consensus size: 27

     502623 GACAACTAAC

                       *               
     502633 CGTTGGTAGTTGGGGAAATGGGTCTTG
          1 CGTTGGTAGTTAGGGAAATGGGTCTTG

                                       
     502660 CGTTGGTAGTTAGGGAAATGGGTCTTG
          1 CGTTGGTAGTTAGGGAAATGGGTCTTG

             
     502687 C
          1 C

     502688 ACGATAGAGC


Statistics
Matches: 27,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.16, C:0.09, G:0.42, T:0.33


Consensus pattern (27 bp):   
CGTTGGTAGTTAGGGAAATGGGTCTTG

Left flanking sequence: Indices 502133 -- 502632
CATCGGTGGCGCTGTCTGGCGTGGCCGGGGTTGCTCAACTATGCGGAGCGGAACTTCAATAAAGC
CTTGATGGGAACGCTCGAACGTAGATCGCACCGCCTTTCCAGTACGATGTGGAAATGGTCGCTCG
TCTGGTCTGTGCCTTGCTTCTTGGTCTTGAATGGACCAACCGTACCGTGGGCGTGTTGGGTGCCA
TCCATTCTGACGTTCATGGAGTGGTGGTCCTTATGAGCGGACGGACGACGTTGACTTCCTGATAG
TGGGGTGTACGACTGGTAACCCTGATGGACGGTTGATCTTGCTAGGCGGGATCTATTGACACCGT
TTGGAGCTCTCGCTACGAAGGGGTTGCGGTTGAGACACGCCTATTTGTGAATGCGCCACCCAGTT
ACGTTCAATGCTAAGTAGCCGGAGCGTAACTACGTGCACCTGCACAATACAAGTGAGATAGTGGC
CCAGCCTAGGTTATATAGAGAGGGCTGTGACCATGGACAACTAAC


Right flanking sequence: Indices 502688 -- 503187
ACGATAGAGCAAGGATGTGGCTGTTAGACACCGGCATCATCGTTGGAAGCGCGTATACCAGGTGC
TCACTTGCGGGCGGTGAAATCTATATGAGTTGTACGAGACCCCACCGCTCAGTTACGGTCGGAGC
TGTCGGCTACAGTTATAAGGGGTGGCGCGCGTACGCTATTGGGTGACGCCACGGGCATAGGGGAA
TGTCCCCCAAGTAGTGTGAAACTAGCGTGCACGAAGGAAAGTATCATGTGTGGAGATGGCATTCT
GTAATGGTTCCAGGCAAGGTAGACTGTGTGGGAAAGGCACCGAGCGGGATGGTTGAGAAAGAGCA
TCTCCATCCGCGACAAGAACATCACCCTGAGGTCGAGATCTATCCGTTCTTCAAGGGTGAAGGGT
AAGCAAGGTGATCGTGCTTGTTCTATCCGTCAGGTGGCCTTGCCCATCGAGATCAGATGCATGCA
GGCAGGTGTTCCCAACGTAGACTAGGTTGGTTCTTACCTGTCGAT



Found at i:503732 original size:13 final size:13

Alignment explanation


    Indices: 503714--503739  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

     503704 CAACTACGTT

                         
     503714 CTTTTCTGTCATG
          1 CTTTTCTGTCATG

                         
     503727 CTTTTCTGTCATG
          1 CTTTTCTGTCATG

     503740 ATGGGAGGGA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.08, C:0.23, G:0.15, T:0.54


Consensus pattern (13 bp):   
CTTTTCTGTCATG

Left flanking sequence: Indices 503214 -- 503713
CATACATACTGGTTCAACCTGCCGTACCACACATGCCGGATGGCACCGGTAGTTCCCCACAATGA
CGAACTCGCACTCGCTACCCGCTGAAGCTGAGCCTGGCACACCCTTCACCCTTCACTCTTCCGTT
CAAACGGTAACAGAATTGGGTGGATGAATGAAGAAGTGAACGTGTTTTCCAAGCACAAGCCCATT
CAGATCAGATGCAAGTCGCAAGATCCAGTTGACACTCCTGCATCTTCATAGTGTGTACTGACCAC
CCCCACCACGTATGTCTTCACCGCTTGCTGTTGTTCCCAGGAGTGGGCACACCGCGAGCCAACAC
CACCTTTCGCGCTGCCTCTTCTTCTACCATGTGCGGGGAACCCGACTGAGGACTGAGCATAAAGA
ACAGTTGGTCTCAGTAGGGTCGGGTTATTCTCTCTCTCTGTCCCCGGTAGTGCTATCCTTCTAAT
TACAGAGACACAAAGCTGCTCTACGGACTGACGATCAACTACGTT


Right flanking sequence: Indices 503740 -- 504239
ATGGGAGGGAGTAGGTCAACCCACATACCGGGCGCCTAGTCGATAAAGGGAGTAGGTCACCCCAC
ATACCGGGCGCCTAGTCAGGCTGGGTCACTGCTCAGAGGGGAGGTGTTCAGACGCGGCTTGTTAG
TGTGGCACAACGGTGTCTAGTTACCAACTAGACGGCTTCGGCAAGGCTTTTGACAAGAACATATC
GAGCCTAACCCACACGTAACCCCAACCCCACCTCAAGCGGAGCGGGGGGGCGTTGTTGTAACGCC
TATTAAGGTAGCTCTATAAAAACTGGTTCGTATGACCCCCCTCTACCCCCCGATTGTTGTTGTTT
TCAACCGCGTTTACTCGTACCGCACGCAGCACCACCACCACCTCACCAATATAGAAACGGACTGA
CGCAGGCAGGCAGGCAGCCGCGGGCGCTTGGAAGATCGTTCAGAGCCGTGGACCTGGAGGTAAAT
CCGAACAAGGAACGTCGTCGGTACGGTACTGCAGTCAGTGGGCGG



Found at i:506982 original size:27 final size:27

Alignment explanation


    Indices: 506944--506997  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

     506934 CGCTCGTGGT

                                       
     506944 GCCTTCTGATACAGTGAGTTTTACGTA
          1 GCCTTCTGATACAGTGAGTTTTACGTA

                                       
     506971 GCCTTCTGATACAGTGAGTTTTACGTA
          1 GCCTTCTGATACAGTGAGTTTTACGTA

     506998 TAGATGCGTA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.22, C:0.19, G:0.22, T:0.37


Consensus pattern (27 bp):   
GCCTTCTGATACAGTGAGTTTTACGTA

Left flanking sequence: Indices 506444 -- 506943
CCCATCTCACGCGCCCCGGAATAGCGTATAGTACCTTGTGACGCCGCCGCGCCAATGAACCTTAC
CGAAGACCCTTTCCCCAGTAGTTGCCCCGAGTACTTACGTAGGGTGGGGGATGGTGGATCGTAGC
CGGGTACTTTCTGAGAGGGCTCAGTACCTGTCTGCAATAAGACCGTCTATTATAAACGCTATATC
GGTCTATCAGTGATTCGAGGTAAATGCTTTTGGCATTGTGATAGGGAGTTGCCCCGTCAGCCCTG
GATTGCTGTGGGTTTCCATGCTCCACAAACACGTATGCTGTGTCAAGGTAGAAACAACCACGGTG
GGAACGGCGAAACCGCCATGCGCGACAGATTATTGAATTGTATTGGTGGGGCATGGCAGACTCTC
GTTATAGTCGAGAATCACAGGCCGGCATCACCGCTTGCTTTATATTGATGAGGGTTCCCACCCAG
TTTGAAATGCAATTTCACATGCATACATCCATAAACGCTCGTGGT


Right flanking sequence: Indices 506998 -- 507497
TAGATGCGTAGGCCGTCGCTCGGGGCGCAACAACAACTACCCCCAGTGCAACTCCCGCCGGTAGG
ACCCCGGTGGAGGGTAATCCGAAATCAACTATCACGCATACATCCATAAACCGTTATCGAACACA
CACCCGAAATCGCCCTCCCGTGGTTGTAGGCGATATGGTGCTTTACGACATTGTATTCAACACCC
GAAATCACGTTGTATAAACGCGCGAGGGAGGGCTGGTCCGTGGTCTCACCTGTTTCTTAACACAT
GGGGCGGCCCCACCGTACGTCAATAAATAACGCGAGGGCGCGTATCGAAATAGGAACAAGGTACC
GCTTCGCTAGTATATACTGATACGCCGATCGAAGTACCGCGGAGCGGGAGCGTATAGCGTATGCG
GGAACGTATAGCGTATATATATGCCCGAAAACGGGAACAGCCGTAGCGTAGGAACAGCAGCCGTA
GCGTATATTATATAATAGCAGCCTGCGGTAGCGGAGAACGCTGTA



Found at i:507390 original size:19 final size:19

Alignment explanation


    Indices: 507366--507403  Score: 67
    Period size: 19  Copynumber: 2.0  Consensus size: 19

     507356 GTACCGCGGA

                  *            
     507366 GCGGGAGCGTATAGCGTAT
          1 GCGGGAACGTATAGCGTAT

                               
     507385 GCGGGAACGTATAGCGTAT
          1 GCGGGAACGTATAGCGTAT

     507404 ATATATGCCC


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   18  1.00

ACGTcount: A:0.24, C:0.16, G:0.39, T:0.21


Consensus pattern (19 bp):   
GCGGGAACGTATAGCGTAT

Left flanking sequence: Indices 506866 -- 507365
GCTTGCTTTATATTGATGAGGGTTCCCACCCAGTTTGAAATGCAATTTCACATGCATACATCCAT
AAACGCTCGTGGTGCCTTCTGATACAGTGAGTTTTACGTAGCCTTCTGATACAGTGAGTTTTACG
TATAGATGCGTAGGCCGTCGCTCGGGGCGCAACAACAACTACCCCCAGTGCAACTCCCGCCGGTA
GGACCCCGGTGGAGGGTAATCCGAAATCAACTATCACGCATACATCCATAAACCGTTATCGAACA
CACACCCGAAATCGCCCTCCCGTGGTTGTAGGCGATATGGTGCTTTACGACATTGTATTCAACAC
CCGAAATCACGTTGTATAAACGCGCGAGGGAGGGCTGGTCCGTGGTCTCACCTGTTTCTTAACAC
ATGGGGCGGCCCCACCGTACGTCAATAAATAACGCGAGGGCGCGTATCGAAATAGGAACAAGGTA
CCGCTTCGCTAGTATATACTGATACGCCGATCGAAGTACCGCGGA


Right flanking sequence: Indices 507404 -- 507903
ATATATGCCCGAAAACGGGAACAGCCGTAGCGTAGGAACAGCAGCCGTAGCGTATATTATATAAT
AGCAGCCTGCGGTAGCGGAGAACGCTGTAAGGGTTGCTTGGTCCCCCTCGTAACAGGCAGACAAG
AACAGGTGGTCCCGCTTGCTCTCGTAGGCCGCGAGGTAAGCCTATATAACCCGGGTGACCCCGGC
CGTCCAGTTGGCACTCGTTCTTCCCCCACTTGTGAACGGCAACATGATCTAGTATCTGATCCTAT
CTCATACCCCGATTCTACTCCCTTGTTGTCTACGAACCCGCTGCTCAACAACAGCTAGCCTTCCC
CGCGAAGCGGGCATATCATATAGTAGGAGGTCTACGAATCGGTTGCTACTCCCTGGGATCAGGCA
ACTTGGAACCCACGCGCATGCAATTCGTTTCAATTAGTCGCACATGGTGGGGCCCAATACGGGTC
ATCTCGAGTGCACCTTTCCCCAGATACTGCGCACCATGGCCCGCT



Found at i:508992 original size:15 final size:15

Alignment explanation


    Indices: 508972--509003  Score: 55
    Period size: 15  Copynumber: 2.1  Consensus size: 15

     508962 TGCAGTGAGA

                           
     508972 TTGATACATAACGGC
          1 TTGATACATAACGGC

                       *   
     508987 TTGATACATAAGGGC
          1 TTGATACATAACGGC

              
     509002 TT
          1 TT

     509004 TAGCGTTGTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   16  1.00

ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31


Consensus pattern (15 bp):   
TTGATACATAACGGC

Left flanking sequence: Indices 508472 -- 508971
CATGAACCATCACAACGCTACCTTGCTTCTAGGGAGGTGGGGTGTAGTATCAATCGATTACCCGT
AGCTCTGGCTCCTTCAGTGTAGACGCGGTTCATTCTAATTCGTTTTCGGCGTGCTTCGTTCACCA
CCACATGCGTGTATGTATCAGGAAACTGGATTATTGATGAGCTGGTATGGCGTTGTATGTTATTG
ATGTTGGTATATTCGTAGACCCGGGTGACAGGTTATTGGCAGGTAAGCGAGGATACTCTCCTATG
AAGGGGCGGTACGTGGTACCATACCCCCTTTCACCTTCCGGTTGGGCAGGTTCGACCCCGTGAGT
TGTGACATGACCAGCTTTTGACCTAGTTCTAGTAAGTACCTTCCGGCCACGATCACAGGTACGAC
TTCGGGGAAATAAATTGACGGTGGGTGGGTAACGTTCTTTGTGAGGACTCGCTTACTGATGACTG
ATACGTGGCACAAACAAGCAATATGTGGGCCTGCCTGCAGTGAGA


Right flanking sequence: Indices 509004 -- 509503
TAGCGTTGTGTGACCTGGCTGCTACCCGGCAACCCCCAACCGGTACGACGTACCAACCCCGGGAG
CGTACGCGCGGGTGGTCTCGCGTTTAGGGCCCGATTGCGGCACGAGTGGGAACTCTGTAAATCGG
CTCCCATATGGTACTAGTTTCACCGCACGTGATATACCAGATCACACAAGGTAACTACGGCTGGC
TATATACGCCGTCTATATCAATGACTGGATTGCAGAATGGAATGGTTGGTCTTGTGCTTAGGAAC
CGGCACGGGCATCGACTTCGTCGAGTTCGTCATACATGACTACTTCCCTCTGGATCGGGTACGTC
GTACCTTCCTCAGGTGCCTCCGTTGACATGGCATAATCATCTGGCCTCAGGTGTATACGACTGCC
CTTGCTTTTGTAACAAGTATGCGGTAGGATGCTGGTAGCTGCTATCTATCTCCCATAACCGGTAC
CAGGTACCCACTTCGGAAACCGGTTATGGTATCGCGGGTTCACCC



Found at i:511659 original size:13 final size:13

Alignment explanation


    Indices: 511641--511666  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

     511631 TTGAGGTGGG

                         
     511641 GGTGGCGTCGTAA
          1 GGTGGCGTCGTAA

                         
     511654 GGTGGCGTCGTAA
          1 GGTGGCGTCGTAA

     511667 TGAAGGTTTA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.15, C:0.15, G:0.46, T:0.23


Consensus pattern (13 bp):   
GGTGGCGTCGTAA

Left flanking sequence: Indices 511141 -- 511640
CTGGAGTGTTGCAGATTTGTCGACAGCCCGGTATATTCGTAACGGAGTGGATGAACCAACGAACC
CCACCACCCCACCCCACCGTGACGCGGGCGGCCGCCGTTATTGAACGTTGCGGTAATACCAGCTG
TGATCGCTCATCAACTACTGTTGCGGGACGACCGCCCACCGTACGTCAAGCTTGCAGTTGTTGGA
CTGCTAGGTCCAAGTTACACGGTTAGTAGATGTACTTCGGCGTATATGGTTACCATACGGTATGT
TCATCCGTGAGACCGATCTCGTTCTACGGTTATGCCACTCCAGTTGATACCACTTGACTCGACTA
CTTATTCATCAAGAGGTGGTTGTAAAGTCTGTGATGGTGTTACCAACTATGTGTCCAATATAGTG
GGAAGCGGGTGCTGTCTGCCGGGTTCAACTGCTGCGGATGCCCGTGGGGTGGATGCCCGTGGGAA
TGATAAACTCGGACTGAGTTACCCTACTTTCGTTATTGAGGTGGG


Right flanking sequence: Indices 511667 -- 512166
TGAAGGTTTATCGCCCCCTACTGCGGTGCGGGGGCTAGTACACCGCATGGTAAAGTGCCATCACG
CTCACGGTAGCCGTCACGTTCGATCGTGTTGTGGCGCAATGTGGGCTGGCTTATGTGCCAGTAAT
TGAAACAGGTATGTTGGCTGGGATAGTGTCCGTGAACGCTGCTGCGGCTTCGACACACTCGAAGC
CTTGCCCTTGCACGTTGGGGCTGATGCTGATGCACTCTGCCAGCTGAAGGAACTACATGCTTGCA
CGTTGGGGCTGATGCTGATGCACTCTGCCAGCTGAAGGAACTACATGAAAGAGTGCGTAGATCTT
GGGTGACTATCATATAGTAGTGCTTCCATCTGTGATGGTGATGATATTGAGACTGGCTTTCCGCG
TGGTGCTGCAGCTCCGGCGTATGTGTCTTCGGGCACACACTGTTCGTCTCGCCCTCCGTGCTGTA
TGGTGGTGCCCCCCAAAAAAGGAACAAGTATATAGTACAACATCT



Found at i:511931 original size:53 final size:53

Alignment explanation


    Indices: 511868--511973  Score: 212
    Period size: 53  Copynumber: 2.0  Consensus size: 53

     511858 AAGCCTTGCC

                                                                 
     511868 CTTGCACGTTGGGGCTGATGCTGATGCACTCTGCCAGCTGAAGGAACTACATG
          1 CTTGCACGTTGGGGCTGATGCTGATGCACTCTGCCAGCTGAAGGAACTACATG

                                                                 
     511921 CTTGCACGTTGGGGCTGATGCTGATGCACTCTGCCAGCTGAAGGAACTACATG
          1 CTTGCACGTTGGGGCTGATGCTGATGCACTCTGCCAGCTGAAGGAACTACATG

     511974 AAAGAGTGCG


Statistics
Matches: 53,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  53   53  1.00

ACGTcount: A:0.21, C:0.25, G:0.30, T:0.25


Consensus pattern (53 bp):   
CTTGCACGTTGGGGCTGATGCTGATGCACTCTGCCAGCTGAAGGAACTACATG

Left flanking sequence: Indices 511368 -- 511867
TACTTCGGCGTATATGGTTACCATACGGTATGTTCATCCGTGAGACCGATCTCGTTCTACGGTTA
TGCCACTCCAGTTGATACCACTTGACTCGACTACTTATTCATCAAGAGGTGGTTGTAAAGTCTGT
GATGGTGTTACCAACTATGTGTCCAATATAGTGGGAAGCGGGTGCTGTCTGCCGGGTTCAACTGC
TGCGGATGCCCGTGGGGTGGATGCCCGTGGGAATGATAAACTCGGACTGAGTTACCCTACTTTCG
TTATTGAGGTGGGGGTGGCGTCGTAAGGTGGCGTCGTAATGAAGGTTTATCGCCCCCTACTGCGG
TGCGGGGGCTAGTACACCGCATGGTAAAGTGCCATCACGCTCACGGTAGCCGTCACGTTCGATCG
TGTTGTGGCGCAATGTGGGCTGGCTTATGTGCCAGTAATTGAAACAGGTATGTTGGCTGGGATAG
TGTCCGTGAACGCTGCTGCGGCTTCGACACACTCGAAGCCTTGCC


Right flanking sequence: Indices 511974 -- 512473
AAAGAGTGCGTAGATCTTGGGTGACTATCATATAGTAGTGCTTCCATCTGTGATGGTGATGATAT
TGAGACTGGCTTTCCGCGTGGTGCTGCAGCTCCGGCGTATGTGTCTTCGGGCACACACTGTTCGT
CTCGCCCTCCGTGCTGTATGGTGGTGCCCCCCAAAAAAGGAACAAGTATATAGTACAACATCTAC
ATGTGCCGCCCCTTGCTGGAAATGTTCCGAGAAAGGTTTCTCCCTCGGGGCTCGGATGGCAGATG
TGCGTTTGTCAGTGTGACATGGCAGCGCCTATCTCTCCATCTGTTGTCCAAGTATCGGCCAGTAT
CTGCGAGGTTGAACTAGACGATGAGATGTGAGCATCTGTGGTATATAGTGTTGCTCTGGTTCAAC
TACGAACGGCGGAGCGTCACGTCCCGCAACGGTTGTCTGACTCCGGGGGTACCGGGTCCAGACTC
GTTATCATGTACCCCAGTGTGTTCCCCGCGAATGTGAACCGAGGA



Found at i:513194 original size:17 final size:17

Alignment explanation


    Indices: 513172--513205  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

     513162 ACAACTAGCT

                             
     513172 AGCTATATATCAGTGGA
          1 AGCTATATATCAGTGGA

                             
     513189 AGCTATATATCAGTGGA
          1 AGCTATATATCAGTGGA

     513206 GAATGTGTCC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29


Consensus pattern (17 bp):   
AGCTATATATCAGTGGA

Left flanking sequence: Indices 512672 -- 513171
AGGGTAGGATGCCTGATGTCGAACGATGGAGAGGGAGATACTACAGGCGCGCCTTCAGACGACCA
TCGATTGGCACGAACGGGGCGGTGTGGTTTCGCCGCTTATGGAACTGTTTCCCGGAGTTACGTAC
TAATGGATGAAGTAAGCCTTCTGTGTGTGGCGTGCGCCCGTGAGGACCAACCACTCAGTCCGGCG
TGACAGCTAGCTCCTCACTAATGATCCTGTTCCATGAAGCAGGCGCTGACGGGGTTACCGGCATA
ACACGGACAACGGGAAAACCCCAGGGTGCCATACTGGCTGTGGTACGTAGGGCTGGGCTTGGTCT
CCCCGATGTGGCCCTTGGAGTGAAGTCATTCGTTGGGGGATATGGATTTCTATTCCTCCAAATTC
GAGTTGTACTTGGGACGCACAACAACTACTGCTATTCCCACACGCGAACACGTAGGGGGCGCGGG
CTTATGACCATATATAGCGCTACCTACCGTATAGAACAACTAGCT


Right flanking sequence: Indices 513206 -- 513705
GAATGTGTCCAGGCTTGTGTAGGCGAGAGACAGTGGAGAATGTATCCAGGCTCGTGTAGGCGAGA
GACTTACCTTACCCCCCGTTATCCCCTGCTAAGTACGCGGATTGCATCCTAAGGGATTTGTGTTT
GGAGACTCTGCTAGCTAGTACGGTGAGCCTTTTCCTCGTCTCCACCCACGTCCTCACGCCTATCC
CCTACATGAGGTGGCCCCGCTTGAACCACACGGAGGCAAAGCTGCGTTATATAGGGTGGGGCCCG
CGCCAGGTTAGTGACCTGACTCTACGTATGCGCTGGGGTGATGACTGGCAAGTGGAGAACTATCA
TCACCGGTACGAGCCCCCTACAGGTGCAGCGACCGCACCCAGGTCGGCGGCGGTAGGTATATATG
TGTCGACATGGGCTTCTACGTAATGCCCGACCATGAAGTGAACAACCTCGTTCTGAGGTAGGGTA
GCCCAGCCACAGGCTCAAGGTACCCCGTCTGCACTTGCCGTTATG



Found at i:513254 original size:37 final size:37

Alignment explanation


    Indices: 513199--513273  Score: 132
    Period size: 37  Copynumber: 2.0  Consensus size: 37

     513189 AGCTATATAT

                         *        *              
     513199 CAGTGGAGAATGTGTCCAGGCTTGTGTAGGCGAGAGA
          1 CAGTGGAGAATGTATCCAGGCTCGTGTAGGCGAGAGA

                                                 
     513236 CAGTGGAGAATGTATCCAGGCTCGTGTAGGCGAGAGA
          1 CAGTGGAGAATGTATCCAGGCTCGTGTAGGCGAGAGA

             
     513273 C
          1 C

     513274 TTACCTTACC


Statistics
Matches: 36,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  37   36  1.00

ACGTcount: A:0.25, C:0.16, G:0.39, T:0.20


Consensus pattern (37 bp):   
CAGTGGAGAATGTATCCAGGCTCGTGTAGGCGAGAGA

Left flanking sequence: Indices 512699 -- 513198
GGAGAGGGAGATACTACAGGCGCGCCTTCAGACGACCATCGATTGGCACGAACGGGGCGGTGTGG
TTTCGCCGCTTATGGAACTGTTTCCCGGAGTTACGTACTAATGGATGAAGTAAGCCTTCTGTGTG
TGGCGTGCGCCCGTGAGGACCAACCACTCAGTCCGGCGTGACAGCTAGCTCCTCACTAATGATCC
TGTTCCATGAAGCAGGCGCTGACGGGGTTACCGGCATAACACGGACAACGGGAAAACCCCAGGGT
GCCATACTGGCTGTGGTACGTAGGGCTGGGCTTGGTCTCCCCGATGTGGCCCTTGGAGTGAAGTC
ATTCGTTGGGGGATATGGATTTCTATTCCTCCAAATTCGAGTTGTACTTGGGACGCACAACAACT
ACTGCTATTCCCACACGCGAACACGTAGGGGGCGCGGGCTTATGACCATATATAGCGCTACCTAC
CGTATAGAACAACTAGCTAGCTATATATCAGTGGAAGCTATATAT


Right flanking sequence: Indices 513274 -- 513773
TTACCTTACCCCCCGTTATCCCCTGCTAAGTACGCGGATTGCATCCTAAGGGATTTGTGTTTGGA
GACTCTGCTAGCTAGTACGGTGAGCCTTTTCCTCGTCTCCACCCACGTCCTCACGCCTATCCCCT
ACATGAGGTGGCCCCGCTTGAACCACACGGAGGCAAAGCTGCGTTATATAGGGTGGGGCCCGCGC
CAGGTTAGTGACCTGACTCTACGTATGCGCTGGGGTGATGACTGGCAAGTGGAGAACTATCATCA
CCGGTACGAGCCCCCTACAGGTGCAGCGACCGCACCCAGGTCGGCGGCGGTAGGTATATATGTGT
CGACATGGGCTTCTACGTAATGCCCGACCATGAAGTGAACAACCTCGTTCTGAGGTAGGGTAGCC
CAGCCACAGGCTCAAGGTACCCCGTCTGCACTTGCCGTTATGGGACAGATGCAGATCTCTGATAG
GGCGGTATCAGTGGCCGCGCGGCGACGATTATATAGAGGACGCGA



Found at i:520728 original size:5 final size:5

Alignment explanation


    Indices: 520718--520760  Score: 86
    Period size: 5  Copynumber: 8.6  Consensus size: 5

     520708 ACTTATTGAC

                                                               
     520718 GGTGA GGTGA GGTGA GGTGA GGTGA GGTGA GGTGA GGTGA GGT
          1 GGTGA GGTGA GGTGA GGTGA GGTGA GGTGA GGTGA GGTGA GGT

     520761 CACCAATATC


Statistics
Matches: 38,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   38  1.00

ACGTcount: A:0.19, C:0.00, G:0.60, T:0.21


Consensus pattern (5 bp):   
GGTGA

Left flanking sequence: Indices 520218 -- 520717
CAAGGCGCCAACCTACGGACCTTCCGTCTTGTAGGGCAGGTTATCATATAGAAAGAGTGAGTGGC
ACACACATAGTTCGGGTTCAACGGTCTCCTCTTACTGAACCGGACAGCACAGATAGAGAGCTAGA
CAAATGCAGTTAGTGTTTCTCATCCGAGCCCGCTCATAGTTGCTTATGTATGCGTATCAGTAACC
TCCTTTGTTATGAGAGATGTACGTAGCCCGGGCGGGCCGCTTTGTGGCACCCCACCCGTCAATAA
CGGTACGCGCTCTTGCCGCTACATGGTTATAAACGCGAAGCGCGGCTCCTACCCTTTCCGATCCG
TTATGGGCTCGGCACCCACGAATCCCTTTGGCTACCCACCGAACTAACCGTTCCCTACCGAACTA
ACCTAGAGCGAATCCAGCCTGTGTATGTATCCCGGTCCAACGGATCACTTCCGAAGAGACCTGAG
TTTACCGTACAACCAACAACACAACACTTAACAACACTTATTGAC


Right flanking sequence: Indices 520761 -- 521260
CACCAATATCCGATTTCCAATATCCCAACTACTCAACGCTGGTTCAGTTCTGGTAGGCAGCCTTG
CACCGCTTTTTCAATGGTGAGCTCGCTATCGACCCTCCCGCTACGGCGCTTTGACCGCAACGGTG
ATTGCAGTTACTAGGGAGGTGAGCGATAAGGGCTGCCCAAGCGCGACGGGTGGCTGTGGGATTGA
AGCGGGATAGGACAGAGGCAGTTGCTTTTGCAGCCTGCAGTGAAGGATACGCGACGACGGCTTCG
TCCCGGTAACCACCACGTACCAAGTAGCAACGAATGGGGCGGGGGATGGATTCGAACTCAGCGGT
GCTCCCCCCTACGGCTATGTATGTGAGCTCAAAACGACCACGAAGGCGAGGGAACGTAAACCGTG
CTGTCCTACTTGCGCGTGTTCCTCACGGAGCTAGGTGAAAGCAGGACCTTGACTCCCCTAATAAT
CCAACCCGCCTCGTATTCACATAGGTAAAGGTAGGTAAAGGTCTG



Found at i:521535 original size:19 final size:19

Alignment explanation


    Indices: 521511--521549  Score: 69
    Period size: 19  Copynumber: 2.1  Consensus size: 19

     521501 AGCAGCGAAA

                               
     521511 GTGGCGGATTCGCATATGT
          1 GTGGCGGATTCGCATATGT

                         *     
     521530 GTGGCGGATTCGCCTATGT
          1 GTGGCGGATTCGCATATGT

             
     521549 G
          1 G

     521550 CTTGGTCGTC


Statistics
Matches: 19,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   19  1.00

ACGTcount: A:0.13, C:0.18, G:0.38, T:0.31


Consensus pattern (19 bp):   
GTGGCGGATTCGCATATGT

Left flanking sequence: Indices 521011 -- 521510
GACGGCTTCGTCCCGGTAACCACCACGTACCAAGTAGCAACGAATGGGGCGGGGGATGGATTCGA
ACTCAGCGGTGCTCCCCCCTACGGCTATGTATGTGAGCTCAAAACGACCACGAAGGCGAGGGAAC
GTAAACCGTGCTGTCCTACTTGCGCGTGTTCCTCACGGAGCTAGGTGAAAGCAGGACCTTGACTC
CCCTAATAATCCAACCCGCCTCGTATTCACATAGGTAAAGGTAGGTAAAGGTCTGCCCTTAGTGA
CGTACGGGCCATCACGTATTCACAAACTCACCTCACGTATTCACTAGTATAACAGATACGCATGC
ATCGCCTATGTTCGTATATGACTACTGACATTAGTTGCGTTTACGTAGGGAATGCTGGTTCAGTT
GTTACGTCATTCAGTTTTCTTAGTCGGGTTGGACTTGCCCTCTCCAACCTGCGTATGCGGGGACC
ACCATATATAACTAGAACACGGTTGTGCTTGTTACAGCAGCGAAA


Right flanking sequence: Indices 521550 -- 522049
CTTGGTCGTCAACATAACCATACCATACCATATGGCGGCTTATATGCTTTTATGCTCTGCTTCTG
TTCATGTAGCGGTCGTTTGTGATTGTGGAACCTCTCTATATAACCGATTCAGTGAAAGCTAGCCC
AGCGTATCACTCAGTGCCTTAACCGTCCACTAGGATGAGGTGTTTTGTGTGAGCCCAGCACTACT
ACATATGGGGGCTCTCTGTCGCCTGAATGGAGCGAGGTGAGCATTGGCTTACGTCAGTTCAGTAG
TACTTGTTACCGCACTGACCGAAATCCGTTTATGTTACTGACTACCTCATGTACCCGATCAGACG
ATAAGTGTTGAGAACCAAGTGGTCTGATCTCTTCTGGTGGCTGGTAAGGGGTGGTGTTGTCGTGT
GGAGAGCCCCTGCCTTTCCTGTAGCTCGTGGAAATGTCTCTTAGTGTGGTGCGTGACGTATGTCG
CTGCCAGCTCCGTGCTCACGTAGGTGAGCGGCCCCCACCTTATAT



Found at i:523846 original size:32 final size:32

Alignment explanation


    Indices: 523809--523872  Score: 119
    Period size: 32  Copynumber: 2.0  Consensus size: 32

     523799 GACCGACCTC

                             *              
     523809 TGGCACTACGTAATAGAGTCAATGCGAGCTGG
          1 TGGCACTACGTAATAGAATCAATGCGAGCTGG

                                            
     523841 TGGCACTACGTAATAGAATCAATGCGAGCTGG
          1 TGGCACTACGTAATAGAATCAATGCGAGCTGG

     523873 CAGATGGCTC


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  32   31  1.00

ACGTcount: A:0.30, C:0.19, G:0.30, T:0.22


Consensus pattern (32 bp):   
TGGCACTACGTAATAGAATCAATGCGAGCTGG

Left flanking sequence: Indices 523309 -- 523808
AAAGCAAGTGTCTTCTATGACCCGGCATGCGCAACCTGGGTGGGGCATTCTCGCTCGCTTCCAGA
TGTCCACATTGACCTCGCCCTACAGTAAGTAAGGGTAATTACAGCTTGTTTCCAGTGCTGCCATA
TAGGCGTTATTGAAGTAAACGCGTGGGCCTTTTGTAGGGCTTAGTAGCGGTGCTGGCGGATGTTC
GGGTTTGCGAGTTCTCTAAGTACATGCCACTTCAACACGGTACCCCAGAAACCTCATTCACATAC
CGCAGCTTCAGCCTTTGTTCCTGCTGCCTGACTGCGAAACCCCCTACAGAACTTCCAACTCTAGA
GCTGGGTGGGGCTTGTTCCATTCACTGTCAAGTCCATATTCCCGAATCACACGGGAATCCGCCCT
TACCTGGGCATCGGTCTCATCGTCTTTGTGTTCCGTGGCAATACCCCGGCGTATTGACGCAGCCA
GCAGATTCGTTTGTAACAATGTGACATGGTCCGAGGACCGACCTC


Right flanking sequence: Indices 523873 -- 524372
CAGATGGCTCTTTCGCAACCATATCCGATCTCCTAACCCCCGCAACCCCATGATCGGGAACGCGT
TACCCCCCTATTGGCAATAACGCGGCAGTCGGTTACCCGTACGTCGTGCTGGAGACTAGGTTCAG
GGGGGTCGCTCCGAAGGGAGCTTAAAGTGTCGGTAAGGGAATACAAGGAGTCGAGCGGACTCGAG
TTCGGATTCTGTACCACGGTTTGTGAATAGATCGCCCTCCCGGCACCGAAGACGCGACAGCCCGT
AGAGTGGGCCAATCTGCGGTGCAACCGGAACATAGGAGCAGCAATCCCGCGAGGGAACAGGGTCC
GAGACGATGCGTCCCTCCATAGCTTCGTTCGTCCGGGGATGGAATCCCTCGATGGCGGTGCGGAA
ACCCATGACACCGTTCCTTTGAGATAGAAGTACGTCAACGATAACGCCATAGCGCAAACGGATAC
CGTACCGGACCGCTTCTGTGCCAATCTAGTTCCAACGCCGATCCC



Found at i:528944 original size:5 final size:5

Alignment explanation


    Indices: 528930--528960  Score: 53
    Period size: 5  Copynumber: 6.0  Consensus size: 5

     528920 TGACGGTGAG

                                                
     528930 GTGGT GGTGGT GTGGT GTGGT GTGGT GTGGT
          1 GTGGT -GTGGT GTGGT GTGGT GTGGT GTGGT

     528961 ATATCTAGGT


Statistics
Matches: 25,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5   20  0.80
   6    5  0.20

ACGTcount: A:0.00, C:0.00, G:0.61, T:0.39


Consensus pattern (5 bp):   
GTGGT

Left flanking sequence: Indices 528430 -- 528929
TGGACATTCCAAAATCGTTCGTTATGAGGGCGTTGGGGCGGCTAATGCTCATCATCACTTAGGGA
AAACACACTGTAGCTGGCCGTATTCGGGGGATGTACATAATGGGGGGGCGTATGTACGGGGCGGA
CCAACCTCGGCCCGGCGACTTCACTGTCTGGTCTCCGTAAGCAGAACAAGGTGTCCCTTATGCTA
CATGAGTTCGCGATACGCTGGATGCGGTCGGCCGCCTACGCTTCCATGTTGTGGACCAGGCAACA
GTTTCATGAAGCACTGGTGGATAGATAGAGTGTCTTGGTCTATAGCGAGCCAGTTGAGTTGACCT
TGGAAATGACGCAACAATGTCTAGTATGTTACGCAACAATGTCTACCGTATTCGGGGGGTACCCT
ACTCCCTCCGTAATTCCCCACCCGTACAACCCCATGGGGGGTATAATAACGTGTACGCAACAATG
TAGGAACAAATGCGGTACCACGCGTTTCAAGTTATTGACGGTGAG


Right flanking sequence: Indices 528961 -- 529460
ATATCTAGGTACCGATCTATCCGCTACATCGCACAGAGGAAGAGATACGAGTACCAAGGTTACGT
ATTAAGGTTAGTGGATCAGATAGGTGCTCAGACAGTGAGGTGTTCAGACAGTTAGGCGCTCAGAA
TGGACCTAGGTCAACCCCAATAAGATGTTCGAACTACAGATGATAGAACTACAGGCGTGTTGCGG
TGAACTCCCAGTTCGTTGGGTTATCCACCCTGGGTCGCAAGGGGGTGGTGCACAACGGAGTCGAG
TGGTACTCGCATACCCGTTGCATTATGAGCGGAGAATGACTTCTGGCGAGATGGATGGTACCGTC
CTAGCTGCTCATAACGGAGTCGGGCCCTGATATGGGCCTTCTGGAGTACCCGTTGCAGACGGACC
CATCACGTTCAGATGGCTCTGGGTAGGGTCCTGGCCCCGATGATCCTAGAAACTACAGGTGAGTC
GCGGTGTCACGTGTACGGTTGCCTTCGGAGTGTTGCCAGTTTGTT



Found at i:529072 original size:16 final size:16

Alignment explanation


    Indices: 529047--529089  Score: 59
    Period size: 16  Copynumber: 2.7  Consensus size: 16

     529037 TGGATCAGAT

                            
     529047 AGGTGCTCAGACAGTG
          1 AGGTGCTCAGACAGTG

                 *         *
     529063 AGGTGTTCAGACAGTT
          1 AGGTGCTCAGACAGTG

               *       
     529079 AGGCGCTCAGA
          1 AGGTGCTCAGA

     529090 ATGGACCTAG


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  16   23  1.00

ACGTcount: A:0.26, C:0.19, G:0.35, T:0.21


Consensus pattern (16 bp):   
AGGTGCTCAGACAGTG

Left flanking sequence: Indices 528547 -- 529046
TGTACGGGGCGGACCAACCTCGGCCCGGCGACTTCACTGTCTGGTCTCCGTAAGCAGAACAAGGT
GTCCCTTATGCTACATGAGTTCGCGATACGCTGGATGCGGTCGGCCGCCTACGCTTCCATGTTGT
GGACCAGGCAACAGTTTCATGAAGCACTGGTGGATAGATAGAGTGTCTTGGTCTATAGCGAGCCA
GTTGAGTTGACCTTGGAAATGACGCAACAATGTCTAGTATGTTACGCAACAATGTCTACCGTATT
CGGGGGGTACCCTACTCCCTCCGTAATTCCCCACCCGTACAACCCCATGGGGGGTATAATAACGT
GTACGCAACAATGTAGGAACAAATGCGGTACCACGCGTTTCAAGTTATTGACGGTGAGGTGGTGG
TGGTGTGGTGTGGTGTGGTGTGGTATATCTAGGTACCGATCTATCCGCTACATCGCACAGAGGAA
GAGATACGAGTACCAAGGTTACGTATTAAGGTTAGTGGATCAGAT


Right flanking sequence: Indices 529090 -- 529589
ATGGACCTAGGTCAACCCCAATAAGATGTTCGAACTACAGATGATAGAACTACAGGCGTGTTGCG
GTGAACTCCCAGTTCGTTGGGTTATCCACCCTGGGTCGCAAGGGGGTGGTGCACAACGGAGTCGA
GTGGTACTCGCATACCCGTTGCATTATGAGCGGAGAATGACTTCTGGCGAGATGGATGGTACCGT
CCTAGCTGCTCATAACGGAGTCGGGCCCTGATATGGGCCTTCTGGAGTACCCGTTGCAGACGGAC
CCATCACGTTCAGATGGCTCTGGGTAGGGTCCTGGCCCCGATGATCCTAGAAACTACAGGTGAGT
CGCGGTGTCACGTGTACGGTTGCCTTCGGAGTGTTGCCAGTTTGTTCTCCGAGGCGGTCAACCAT
GAGCCCATTTCCTGGATTCCGGTCGAGTGTTTGTAGTGGTTCTTCATAGAAAATGCAACTTGTAT
GATGTGGAGGTTCCCTTCGCTCCGGTACTAGTCGGTAGGGAACAC



Found at i:531110 original size:12 final size:12

Alignment explanation


    Indices: 531093--531124  Score: 64
    Period size: 12  Copynumber: 2.7  Consensus size: 12

     531083 CAATCCCGTT

                        
     531093 CGTGTTGTGTGA
          1 CGTGTTGTGTGA

                        
     531105 CGTGTTGTGTGA
          1 CGTGTTGTGTGA

                    
     531117 CGTGTTGT
          1 CGTGTTGT

     531125 TAAGTGTTGT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   20  1.00

ACGTcount: A:0.06, C:0.09, G:0.41, T:0.44


Consensus pattern (12 bp):   
CGTGTTGTGTGA

Left flanking sequence: Indices 530593 -- 531092
AGTGAGCTGAGGCCTGAACCGATACAGCACGTGAGGAGCCCAGGCGCGTGTTGCGTATCGCCTTA
CCCCGCTGGCTGAGCATCTGATCGTTGCTATAAGGTTTATCTAGTTGTGATTATGTTCCGATGTA
ACGCACACGCAGACTGACCCTTCGATCGTTACCCAATAGAACTGGTTTGATGTTGCTATCTACTA
CCATGAGTCGCGTGTTGTCTCAATGTTGTGTTACTTAACGACTGAATCCAACACGATTATGTAGT
AGTTAATAGACCAGGTTATGTTGGAAATGGTAGTTCCTCACAACCCAATGCAGTTATTGTAAACT
GTTGTTTGTACTAGCTATGTTGTTATCCTGGTGTACGGAAGCATCTCAACTATGTGCTGCGAAGC
ACCTGCCAACCGGCACCTTATGTAGATCAGGTTGACGTGTGTTGGAAAGGGTACGTAGGGCTGCT
TGTAGGTGGGCTGATTCTGACTTGAAGAAGTAAATCAATCCCGTT


Right flanking sequence: Indices 531125 -- 531624
TAAGTGTTGTTAAGTGTTGTTATTGAGGTGGGGTGGGGTGGGGTGGGGCACGCACCTTTCGGTTT
CATAGAGATAGTTGTTGTTGCTATCTTCCCAGGAGCACGTCCCGAACCCGAAGCGTAGGACCACA
TAGATCCATCCCTCAATCTCTCCATCCCGCTATGCGGGGCGCGGGGCAGGTATGCGAGAATAGAT
CTTCCCGTTTCCCCTACAGGAGATAACAACCCGACTTGCCGCCTAAAGGGGCCCGTACAACCCCC
ACCGTACACGACCGCTGCTGTCTCTTCCTCGTTGTTGGTTCGGTGCCCACCCCACTCCACCAGCA
TCGACGTATGGGCGGTCTTGTTCCGGGCCGTGCTGGTTGAGTACATATGTGAGGCAAGGGTGGCA
GTGAAGGTGAGGTTCCACAACGGTGGAGACAACCAGTTGTGGTCGCCCGCAGTTGTTGAGGTTGT
GTAGTTAGTTACACCCCCCACCGTATATAACTCTAGCTGTAGCCG



Found at i:531131 original size:10 final size:10

Alignment explanation


    Indices: 531118--531146  Score: 58
    Period size: 10  Copynumber: 2.9  Consensus size: 10

     531108 GTTGTGTGAC

                      
     531118 GTGTTGTTAA
          1 GTGTTGTTAA

                      
     531128 GTGTTGTTAA
          1 GTGTTGTTAA

                     
     531138 GTGTTGTTA
          1 GTGTTGTTA

     531147 TTGAGGTGGG


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   19  1.00

ACGTcount: A:0.17, C:0.00, G:0.31, T:0.52


Consensus pattern (10 bp):   
GTGTTGTTAA

Left flanking sequence: Indices 530618 -- 531117
AGCACGTGAGGAGCCCAGGCGCGTGTTGCGTATCGCCTTACCCCGCTGGCTGAGCATCTGATCGT
TGCTATAAGGTTTATCTAGTTGTGATTATGTTCCGATGTAACGCACACGCAGACTGACCCTTCGA
TCGTTACCCAATAGAACTGGTTTGATGTTGCTATCTACTACCATGAGTCGCGTGTTGTCTCAATG
TTGTGTTACTTAACGACTGAATCCAACACGATTATGTAGTAGTTAATAGACCAGGTTATGTTGGA
AATGGTAGTTCCTCACAACCCAATGCAGTTATTGTAAACTGTTGTTTGTACTAGCTATGTTGTTA
TCCTGGTGTACGGAAGCATCTCAACTATGTGCTGCGAAGCACCTGCCAACCGGCACCTTATGTAG
ATCAGGTTGACGTGTGTTGGAAAGGGTACGTAGGGCTGCTTGTAGGTGGGCTGATTCTGACTTGA
AGAAGTAAATCAATCCCGTTCGTGTTGTGTGACGTGTTGTGTGAC


Right flanking sequence: Indices 531147 -- 531646
TTGAGGTGGGGTGGGGTGGGGTGGGGCACGCACCTTTCGGTTTCATAGAGATAGTTGTTGTTGCT
ATCTTCCCAGGAGCACGTCCCGAACCCGAAGCGTAGGACCACATAGATCCATCCCTCAATCTCTC
CATCCCGCTATGCGGGGCGCGGGGCAGGTATGCGAGAATAGATCTTCCCGTTTCCCCTACAGGAG
ATAACAACCCGACTTGCCGCCTAAAGGGGCCCGTACAACCCCCACCGTACACGACCGCTGCTGTC
TCTTCCTCGTTGTTGGTTCGGTGCCCACCCCACTCCACCAGCATCGACGTATGGGCGGTCTTGTT
CCGGGCCGTGCTGGTTGAGTACATATGTGAGGCAAGGGTGGCAGTGAAGGTGAGGTTCCACAACG
GTGGAGACAACCAGTTGTGGTCGCCCGCAGTTGTTGAGGTTGTGTAGTTAGTTACACCCCCCACC
GTATATAACTCTAGCTGTAGCCGTACATGGGTTTTGGTTTGTTAA



Found at i:534545 original size:6 final size:6

Alignment explanation


    Indices: 534534--534562  Score: 58
    Period size: 6  Copynumber: 4.8  Consensus size: 6

     534524 GGAAAGGTCC

                                             
     534534 ACAACT ACAACT ACAACT ACAACT ACAAC
          1 ACAACT ACAACT ACAACT ACAACT ACAAC

     534563 CACGACTACC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   23  1.00

ACGTcount: A:0.52, C:0.34, G:0.00, T:0.14


Consensus pattern (6 bp):   
ACAACT

Left flanking sequence: Indices 534034 -- 534533
TGTCCCTCCCGCGGGACACCATTCTCCAAAAGAGCGAGCCCGGCGGTGTAGCACCATAAACGCGA
GTTACATACGGTAGCGCGGCGGCTACATAGTCAGTTCGGGGGGGAGAGGTAGTCCAGAAAACAAA
CAACTCCGTACATACGCCGCCGCCCAATACCCCCTTTGGGCCCCTGGTTCGGTAACCGAACTGAG
GTGAGGGACAACAACCGGTTGTTACGGGCCGAACTGTGGGGCGTCCAACATTCATATCGTTGTCC
AACGAAGCTTCGGTCAGGAGTTCGTAACTGGTTGTCAGCGTTACACCATGGAAGTACGGTTGGGT
GGCGTTGCCGGAACTGATAGACTGATCATGATCGGTAGGCAGGGGCCCGTAAGCAGGCAGTATAT
ATGGTGGCAAGTGTGCTGCGGCTAGGCTACTGAACGGGGGGTGGGGTGGGGCTTCCGCTGACGCC
CACAACCTGGGCGTTGACGTGCCAGTATCAGGTCAGGAAAGGTCC


Right flanking sequence: Indices 534563 -- 535062
CACGACTACCGTTTATTGACGTACGGTGGCCGCTCGCTGTAGCTGCCTGCCATTGCCAGCCGGCA
TAAGTGAACAAAGCAGCAAGGCAAGTAGCCAGCCGGCACCGTGACACCGCATCAATAGCCCCGAG
TAACCGCCCACCCGGCGCTTATATAACACTAGACGGACGCGCCCTGTTCCACCGCACTTACCGAA
CTATACGTATTAGGCGCTTCATGGTTGGTTGTACAACCATAAGTACCAAGCGCCGCAGCGCAGTT
ATGAATATATATCGGTAGTTGTCCAGTCGTACCCAAACAATAATATGGCGGATGAAAATGCACCG
TTAATCAAATATTTCAAGCCGGCTTCCGTGGAAAATTCAGAGTTCCTTTTTGATGCTGCGATCAC
GTAAAAACAGTTACTTTGAAGCTCAATAGCTAAATACATGGAAATTAAATCATAAGCCGAGATCA
TAAAGAGCATACTGCAAGTAGAAAGTAGAATTAATACAATGAATT



Found at i:534570 original size:18 final size:18

Alignment explanation


    Indices: 534534--534571  Score: 58
    Period size: 18  Copynumber: 2.1  Consensus size: 18

     534524 GGAAAGGTCC

                       *      
     534534 ACAACTACAACTACAACT
          1 ACAACTACAACCACAACT

                          *   
     534552 ACAACTACAACCACGACT
          1 ACAACTACAACCACAACT

              
     534570 AC
          1 AC

     534572 CGTTTATTGA


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.47, C:0.37, G:0.03, T:0.13


Consensus pattern (18 bp):   
ACAACTACAACCACAACT

Left flanking sequence: Indices 534034 -- 534533
TGTCCCTCCCGCGGGACACCATTCTCCAAAAGAGCGAGCCCGGCGGTGTAGCACCATAAACGCGA
GTTACATACGGTAGCGCGGCGGCTACATAGTCAGTTCGGGGGGGAGAGGTAGTCCAGAAAACAAA
CAACTCCGTACATACGCCGCCGCCCAATACCCCCTTTGGGCCCCTGGTTCGGTAACCGAACTGAG
GTGAGGGACAACAACCGGTTGTTACGGGCCGAACTGTGGGGCGTCCAACATTCATATCGTTGTCC
AACGAAGCTTCGGTCAGGAGTTCGTAACTGGTTGTCAGCGTTACACCATGGAAGTACGGTTGGGT
GGCGTTGCCGGAACTGATAGACTGATCATGATCGGTAGGCAGGGGCCCGTAAGCAGGCAGTATAT
ATGGTGGCAAGTGTGCTGCGGCTAGGCTACTGAACGGGGGGTGGGGTGGGGCTTCCGCTGACGCC
CACAACCTGGGCGTTGACGTGCCAGTATCAGGTCAGGAAAGGTCC


Right flanking sequence: Indices 534572 -- 535071
CGTTTATTGACGTACGGTGGCCGCTCGCTGTAGCTGCCTGCCATTGCCAGCCGGCATAAGTGAAC
AAAGCAGCAAGGCAAGTAGCCAGCCGGCACCGTGACACCGCATCAATAGCCCCGAGTAACCGCCC
ACCCGGCGCTTATATAACACTAGACGGACGCGCCCTGTTCCACCGCACTTACCGAACTATACGTA
TTAGGCGCTTCATGGTTGGTTGTACAACCATAAGTACCAAGCGCCGCAGCGCAGTTATGAATATA
TATCGGTAGTTGTCCAGTCGTACCCAAACAATAATATGGCGGATGAAAATGCACCGTTAATCAAA
TATTTCAAGCCGGCTTCCGTGGAAAATTCAGAGTTCCTTTTTGATGCTGCGATCACGTAAAAACA
GTTACTTTGAAGCTCAATAGCTAAATACATGGAAATTAAATCATAAGCCGAGATCATAAAGAGCA
TACTGCAAGTAGAAAGTAGAATTAATACAATGAATTCGAAAGCCG



Found at i:541527 original size:9 final size:9

Alignment explanation


    Indices: 541513--541539  Score: 54
    Period size: 9  Copynumber: 3.0  Consensus size: 9

     541503 TGATACCGCA

                     
     541513 ACTTACCAC
          1 ACTTACCAC

                     
     541522 ACTTACCAC
          1 ACTTACCAC

                     
     541531 ACTTACCAC
          1 ACTTACCAC

     541540 CCAACCCCTC


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.33, C:0.44, G:0.00, T:0.22


Consensus pattern (9 bp):   
ACTTACCAC

Left flanking sequence: Indices 541013 -- 541512
CCGTTCTACGCGTGCCGGTATATGGGCTTGTGCGGTGTCGACGTCCAAGTAACGGAAACGGTCGT
AACATGGTGGATTCCCCAACAGCAACACCAACCCACCCACAACCGAAGGGTCGCCCACCCGCACT
ATGGGATGGGGCCGTAGGTCTTCAGTATAGTTGCTACAGAAGCAACCGGTGCCCCAAGTAACGTG
GGCGGGCGTAACACATAGGCTGGCCGAATTCTTCTGCATCAGCCCGTACGAACTGAGCCTTCACC
GTAAGGCGCGGGCCCGGCGGATTCTTTATCTTGAGTAACTCTTCTACACCACCACTTTCTTACGA
AACAGATCAGGGGCCGGAGCTGCTACCTCAACCCAACCACCCAACCCCGCCACAACCCCACCTCA
ATAACTGCCGCGTTGGTGGCCCGCACCCGCCACTACGTAAACGGTGAAGTTCAGTATCAGGTTGC
TACGTACTAGTAACGGGGGGTAGTGTATACGCAACTGATACCGCA


Right flanking sequence: Indices 541540 -- 542039
CCAACCCCTCTCGTTATATGGCCCACGACGTTGTTCCAACCCACCCAATGCCCACGAATACAACT
AAACCGGCATGAGCGTTATGGCGGATAGGAGAGGCTCCAAGGCACCTCGGGCCTGAGTTATTGAT
GAGTCTAGCATTGCCAGCCCACCTGTAGAACCTGTAGTTTATTGGTCACGACCAGCGTGCAGTAA
GAGTTCCATTAAGGAGCGTTTCCAGGTTACCCCGTTGATGCGGGGTGTTCCTCGTCCCCGAAGTG
GGAGGCTGGGGGGTTGAAGTGGGTTAGGGGATGGATGGTGGGCCCAAGTAATACGAAGTAGTTGC
CCCGAGTACATACGAAGTGTTACAAAGGTCGAACGCAGTTGGCCTTGGCGAAGGTGGAACAGTCA
GCTATTCTAACTAGAATAAGGCACGCTTCTAGTAGGGTTTCAACTTCAAAAGCAGGTTGGTTGGC
CCCACCCCACCCCACCGCCATATAACTAACTAACTAGTGCCGGTG



Found at i:542944 original size:14 final size:14

Alignment explanation


    Indices: 542925--542953  Score: 58
    Period size: 14  Copynumber: 2.1  Consensus size: 14

     542915 GCCGCATGAG

                          
     542925 ACCTTACCCTTTCT
          1 ACCTTACCCTTTCT

                          
     542939 ACCTTACCCTTTCT
          1 ACCTTACCCTTTCT

             
     542953 A
          1 A

     542954 TATACCGCCC


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   15  1.00

ACGTcount: A:0.17, C:0.41, G:0.00, T:0.41


Consensus pattern (14 bp):   
ACCTTACCCTTTCT

Left flanking sequence: Indices 542425 -- 542924
CCGTCTCTATGTGGTTGTGGTTGTGGTTGTTGTTGTTGTTGTTCCGTAGCAGGAGCTTTCTCTAG
TAACTACGGTTCAGAAGGAACCGCCCGCCCACGTAACCACCACTGTTTCAAACTCTTCTCTCAAC
TCCTTGACTGCTGAAGGGTAGGGTAAGTCGCACCGTTACGTTATTGAGGTGGGGTGGTGTGGTGG
TGGTGCGTGCTTGTTATATCAATGTTGCTCCATGGATATTCTCTTCAATGTGCCGATGCTTCTTG
GGGCCGTTATGTAGGGGCGACCGTGAAGTCACCGCAGCCGGAATTCCTGTTTCCGTGTACGGTAT
ATCGGAGAAGCACTACATCGAAAACCAGTTCCATATGGAACCTAGTGCGCCGGGTATCAGCATGT
CGTTTTCCTGGAACAACCTAGTTTACGGGTCCATACTGGACTACGTAACCGCACACCGCCTGAGA
CAGCAGAGGCAGAGTGACATTGACTAAGTTATGGTGCCGCATGAG


Right flanking sequence: Indices 542954 -- 543453
TATACCGCCCACCGCACCGCACATCCCATCGTGCCCGTGCCCGAAAACCTCTTCTGCTAGATGTG
AATCGTAGTTGAGAAGGCTCCAACTCCGTCGTAGCAAGAGGGCAACAACAATCTCCAAGCAACCA
ACCCAGAAGCTGTTTACTCTGTCTCGATACACTGAAAGCAATGTATTGTGCGTTCGTTATCCCCC
ACTAACCGTCACCCCACTAACCTCACATATATTGACGTCGTCTACGTTGTCTGGTTATCGCAACA
ACAACAGCGGCGGCGGCTAGGCTATATATGGGTGGGTGGGGGGTGTGGCGTGGTGTGGGGTGGGG
TGGGTGGAAGGTGAACACCATTGGGACTTCCGATTCAATACGTGTGGGTCCTGGGGCAGAGGGCT
CGTAGTATCGACGGAGCTTTACTCACAGTAATGCATGCCTTGGTGACTCACGAGGTAAGGAGGTG
GGTGTGGAGAAGGGGGGCCTCAGCAGGCATATTGAAGGATCGAGA



Found at i:543165 original size:15 final size:14

Alignment explanation


    Indices: 543145--543174  Score: 51
    Period size: 15  Copynumber: 2.1  Consensus size: 14

     543135 GTTCGTTATC

                           
     543145 CCCCACTAACCGTCA
          1 CCCCACTAACC-TCA

                          
     543160 CCCCACTAACCTCA
          1 CCCCACTAACCTCA

             
     543174 C
          1 C

     543175 ATATATTGAC


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  14    4  0.27
  15   11  0.73

ACGTcount: A:0.27, C:0.57, G:0.03, T:0.13


Consensus pattern (14 bp):   
CCCCACTAACCTCA

Left flanking sequence: Indices 542645 -- 543144
TGCTCCATGGATATTCTCTTCAATGTGCCGATGCTTCTTGGGGCCGTTATGTAGGGGCGACCGTG
AAGTCACCGCAGCCGGAATTCCTGTTTCCGTGTACGGTATATCGGAGAAGCACTACATCGAAAAC
CAGTTCCATATGGAACCTAGTGCGCCGGGTATCAGCATGTCGTTTTCCTGGAACAACCTAGTTTA
CGGGTCCATACTGGACTACGTAACCGCACACCGCCTGAGACAGCAGAGGCAGAGTGACATTGACT
AAGTTATGGTGCCGCATGAGACCTTACCCTTTCTACCTTACCCTTTCTATATACCGCCCACCGCA
CCGCACATCCCATCGTGCCCGTGCCCGAAAACCTCTTCTGCTAGATGTGAATCGTAGTTGAGAAG
GCTCCAACTCCGTCGTAGCAAGAGGGCAACAACAATCTCCAAGCAACCAACCCAGAAGCTGTTTA
CTCTGTCTCGATACACTGAAAGCAATGTATTGTGCGTTCGTTATC


Right flanking sequence: Indices 543175 -- 543674
ATATATTGACGTCGTCTACGTTGTCTGGTTATCGCAACAACAACAGCGGCGGCGGCTAGGCTATA
TATGGGTGGGTGGGGGGTGTGGCGTGGTGTGGGGTGGGGTGGGTGGAAGGTGAACACCATTGGGA
CTTCCGATTCAATACGTGTGGGTCCTGGGGCAGAGGGCTCGTAGTATCGACGGAGCTTTACTCAC
AGTAATGCATGCCTTGGTGACTCACGAGGTAAGGAGGTGGGTGTGGAGAAGGGGGGCCTCAGCAG
GCATATTGAAGGATCGAGATCGAGGGTAGGAGACTAACACAAATGGTGAGGTTTATGGAGCTACA
GAGAAACCATGTGGGCGTTCTGTTCTCTTAAACGCAAGAGCTATGCGCCGTGGGACTTAGTGGTA
CTGGCTGGGGACTGAAGGTGCGGGTGAAGTCAACCAACCCAGCAACTTGTGACGTTACGTAACGA
CACAAAAACCCTTTTCAAGTGACAGTCATCTACATAGGGATCCCT



Found at i:547949 original size:6 final size:6

Alignment explanation


    Indices: 547938--547969  Score: 64
    Period size: 6  Copynumber: 5.3  Consensus size: 6

     547928 GAGGGTGGTT

                                                 
     547938 TCAGAA TCAGAA TCAGAA TCAGAA TCAGAA TC
          1 TCAGAA TCAGAA TCAGAA TCAGAA TCAGAA TC

     547970 TATGTGGCGG


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.47, C:0.19, G:0.16, T:0.19


Consensus pattern (6 bp):   
TCAGAA

Left flanking sequence: Indices 547438 -- 547937
ACCCACCCTACAGCCGTTGCATAACCAGATTCGTTGACGGGCTTGGTGTTCAGGTCCGTGGGAAT
GGCCATTACCCCCGCTGCGGTGCTGGTGACCTTGACAGGTGGTATGAATTCCGCACGTCTCAAGG
ATGGCCGCACATGGCGTGGTGCTAAGCCGAAGCCGATAGGATATGTAGCCATGTAGCCATATGGT
ATGCGAGTGTGGACTGCGTGAATCGGTGTGTGTCCACCCGGGCTCCTGTGAGGGTAATCCAGAAC
GACCCCCGCTGGACCGTGCATGTGAGTAGCGTTCGAGAGCGTGCCTCGAGATCTGGTTACACCGG
CGGCATGGGATCTCCGTTGAGCCTGGGTGGACAAGATCCTAGACACCATGGAGGGTGGTCCTCGA
TGTTCGCAGTCACATCGCGTTATGTGGGGGGTGCTGGTGTTCCTCCTACGTGATACTGGAAGTCA
TATCGCACATTTCCCAACGCACGGTACCTCGACTCGAGGGTGGTT


Right flanking sequence: Indices 547970 -- 548469
TATGTGGCGGTGGCGGTGGCGGTGGCGGTATGCCTTACGGTTATATAGATGTGAGCTCACCCCGT
GCTTTTGTTGTCGGTGGAGAAGAATGGAATCGGACGGATCATGGTCATGGTCTTCGTTGCTCGCC
CTGGGTCCAGACCTAGAGCGTTGGGCCGGGGATTGCTTCTTGCAAGCGGTCGGGAGATCTCGGTG
TAACTGGCCACGGGTGTAACTGGCGTTCCACGAGAACCACATTAACGGGTGTAACTGGCTGGCGT
TGGAATCACGGTTGTGCTGATACGTACCCTTCCACGCCCTCTCTATATAACCCGGCCAGACGCTG
GTGAGTAAATGCGGCTCCCAGCTTTCAGGTATGGTGGTTTATAGGACAACGCACAAACCACAACC
CGGGCCTAGGCAGAAGGGCGTAAGCAAGACGCGATACGCCCCCGCGCACCGCGGTTATTGAGGTG
GGGGCACAAACAACAAACCAATTACACAACTGACCGAACCAGGGA



Found at i:547982 original size:6 final size:6

Alignment explanation


    Indices: 547973--547998  Score: 52
    Period size: 6  Copynumber: 4.3  Consensus size: 6

     547963 CAGAATCTAT

                                          
     547973 GTGGCG GTGGCG GTGGCG GTGGCG GT
          1 GTGGCG GTGGCG GTGGCG GTGGCG GT

     547999 ATGCCTTACG


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   20  1.00

ACGTcount: A:0.00, C:0.15, G:0.65, T:0.19


Consensus pattern (6 bp):   
GTGGCG

Left flanking sequence: Indices 547473 -- 547972
GACGGGCTTGGTGTTCAGGTCCGTGGGAATGGCCATTACCCCCGCTGCGGTGCTGGTGACCTTGA
CAGGTGGTATGAATTCCGCACGTCTCAAGGATGGCCGCACATGGCGTGGTGCTAAGCCGAAGCCG
ATAGGATATGTAGCCATGTAGCCATATGGTATGCGAGTGTGGACTGCGTGAATCGGTGTGTGTCC
ACCCGGGCTCCTGTGAGGGTAATCCAGAACGACCCCCGCTGGACCGTGCATGTGAGTAGCGTTCG
AGAGCGTGCCTCGAGATCTGGTTACACCGGCGGCATGGGATCTCCGTTGAGCCTGGGTGGACAAG
ATCCTAGACACCATGGAGGGTGGTCCTCGATGTTCGCAGTCACATCGCGTTATGTGGGGGGTGCT
GGTGTTCCTCCTACGTGATACTGGAAGTCATATCGCACATTTCCCAACGCACGGTACCTCGACTC
GAGGGTGGTTTCAGAATCAGAATCAGAATCAGAATCAGAATCTAT


Right flanking sequence: Indices 547999 -- 548498
ATGCCTTACGGTTATATAGATGTGAGCTCACCCCGTGCTTTTGTTGTCGGTGGAGAAGAATGGAA
TCGGACGGATCATGGTCATGGTCTTCGTTGCTCGCCCTGGGTCCAGACCTAGAGCGTTGGGCCGG
GGATTGCTTCTTGCAAGCGGTCGGGAGATCTCGGTGTAACTGGCCACGGGTGTAACTGGCGTTCC
ACGAGAACCACATTAACGGGTGTAACTGGCTGGCGTTGGAATCACGGTTGTGCTGATACGTACCC
TTCCACGCCCTCTCTATATAACCCGGCCAGACGCTGGTGAGTAAATGCGGCTCCCAGCTTTCAGG
TATGGTGGTTTATAGGACAACGCACAAACCACAACCCGGGCCTAGGCAGAAGGGCGTAAGCAAGA
CGCGATACGCCCCCGCGCACCGCGGTTATTGAGGTGGGGGCACAAACAACAAACCAATTACACAA
CTGACCGAACCAGGGAAACCAAGGTACAGTCGCTCGAAGCCTAGC



Found at i:548802 original size:26 final size:26

Alignment explanation


    Indices: 548765--548859  Score: 98
    Period size: 26  Copynumber: 3.9  Consensus size: 26

     548755 CCCCAACCCG

                   *                  
     548765 CACAGTTGCCGCATCGAGTTTGCCCA
          1 CACAGTTCCCGCATCGAGTTTGCCCA

                                        
     548791 CACAGTTCCCGCGCATCGAG---G----
          1 CACAGTT-CC-CGCATCGAGTTTGCCCA

                                      
     548812 C-CAGTTCCCGCATCGAGTTTGCCCA
          1 CACAGTTCCCGCATCGAGTTTGCCCA

                   *               
     548837 CACAGTTGCCGCATCGAGTTTGC
          1 CACAGTTCCCGCATCGAGTTTGC

     548860 GTTCTCGAGA


Statistics
Matches: 57,  Mismatches: 2, Indels: 20
        0.72            0.03        0.25

Matches are distributed among these distances:
  18    9  0.16
  19    2  0.04
  20    5  0.09
  21    2  0.04
  25    2  0.04
  26   27  0.47
  27    1  0.02
  28    9  0.16

ACGTcount: A:0.18, C:0.36, G:0.24, T:0.22


Consensus pattern (26 bp):   
CACAGTTCCCGCATCGAGTTTGCCCA

Left flanking sequence: Indices 548265 -- 548764
GCCCTCTCTATATAACCCGGCCAGACGCTGGTGAGTAAATGCGGCTCCCAGCTTTCAGGTATGGT
GGTTTATAGGACAACGCACAAACCACAACCCGGGCCTAGGCAGAAGGGCGTAAGCAAGACGCGAT
ACGCCCCCGCGCACCGCGGTTATTGAGGTGGGGGCACAAACAACAAACCAATTACACAACTGACC
GAACCAGGGAAACCAAGGTACAGTCGCTCGAAGCCTAGCAGCCTTAGTGACCCCATATAATCCTA
ATGAACCTACTGAACCCTGAACACCAACCCAAGATCCTTTGTGCTGTAGCGACGTATCGTACTGA
GGTGGATACATCCGAAAGCATAAAGCGATTGTTGGGCCGAACCGATCTACTGTTGCCCCATCACG
ATGTTGGGCACCGCCCACAGTTTCAGGATAGGGCTTGGCTGAATGTTACTGCCAGGTCGTGGAGA
TCGACCTTGTAGGGGGGGTACGTTTATACGTACTTCCCCAACCCG


Right flanking sequence: Indices 548860 -- 549359
GTTCTCGAGAGGAGTTGGTGAGTTGTTACCCGAGGTTGGTTGAATTCCCAATCGATTCCTCTATG
TGCCGGCACACTTCGTATATACGGAGATGGATGGTTCGTGTTTACGCGCTGTGGGTGGGAGATAG
TTGCTCGTATCGGAATAGGATACGCCTCACTCAAGCTACTACATATACACCTGGAACTAGCTTAA
CTCATCTCAGTCATTCAGTTGTACCGCTTAAGCAGGACGGATAGATGACAACCGCAAGTTTGTAT
CGAGCTGGAAAACGGTGGGTTACTGGAGGAATCGCTACAGAACAAAGCGTTTACATAAGGGTCAT
TACATAAGCGTTTATACGTACTTGGAACAAGCAGCCAGGTTCAACAGTACATACATATCATGGAG
GAACAGCTAGGCCCACCACCACGTCAATAGAAGATCCAAGAGATCATGCGGGAGCGGTAACAGGT
TCCGTATACCACTCTTACCAGCGACGACCATAGGCACGTAGCAGG



Found at i:549952 original size:18 final size:18

Alignment explanation


    Indices: 549929--549964  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

     549919 TCGACCATAT

                              
     549929 CAATATACGGTTTATTGA
          1 CAATATACGGTTTATTGA

                              
     549947 CAATATACGGTTTATTGA
          1 CAATATACGGTTTATTGA

     549965 ATGAACTTGT


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39


Consensus pattern (18 bp):   
CAATATACGGTTTATTGA

Left flanking sequence: Indices 549429 -- 549928
CCCTTACCATCGACCGTCTAGCGCAAAGCTCCAACAAACTGTCCAATAGGTCCCGGCGAGTCAAC
AGTCGAAGATGGCCATCCACACTCAGGTCAGGGTGGTTCAGAATTTCCGAGCGAAGGGCACGACG
AACACTACCATATAACGAGCGAGAAGCACAGGCCAGGTAAGCCGCCCACCATGTGCCGTAGCTGC
TTATTAGAGGAATCATTTACTGAGATCACGTACGCTTTACGTTCAATTGATACGATCGCATATCC
AATAGATGTCCCATACTAACAACCGTACGCATAACAAACCTCACCTTCGTAGAAAACATCCCATT
GTTGAGATACGCTTGAGATACGCTCCAACACTTGTGCGTAACGCGCCATGCCACACATCCATCTT
GCTAGTTACGCGGCATAGACCAACAACGCAACGAGATGTTCGAGAACCGCTAGTGCACAATGGTG
CCTCACGTGGACCCTGGCATTCGGAACGGGCCATATCGACCATAT


Right flanking sequence: Indices 549965 -- 550464
ATGAACTTGTTCACAGCAACTCCATTGTTCTTACCCGGCGCAGTTAACTCTAGGCCCCAGCCTCG
GGGAAGAGTTGGAATCTATACCCTTACTGACAGAAAGGCCAGGTACTCAGTGCCGTAGGGGGCTT
GCCGTGTACGGGGGAAATCCCACCGCTTACTGACAGTACATTGTTACTTGAGCCAGAGGGATGGG
ATTGAGTCTAGGGCAGGGATAATAAGGTTGAGATAAGACGTAACCCTTCACACCCAGTGCCCCTA
TTCCCTGTAACCTGCGGCTAAAACCGGAACCTCTCTCATTAAACGGTATAGAGCACCTCATAAAG
ATCTCCCCGCCTTTACGGTACACACCAGCAAGTGTACTAGACAGTTAGTGGTGCGACCAGGTTGG
CTCACTCCACAGAAGGCTGAGAACCAGCGCAATAGTCCACAGGTCTCGAGGAGCTTTGTCCACAG
TAACAACCATCACTGAGGCTTCAGAGAGGAGGAAGAAGGCCCCTT



Found at i:551419 original size:25 final size:25

Alignment explanation


    Indices: 551391--551440  Score: 100
    Period size: 25  Copynumber: 2.0  Consensus size: 25

     551381 AGCGTACAAC

                                     
     551391 CGTTTCACCAGCTCGGTACGGATGG
          1 CGTTTCACCAGCTCGGTACGGATGG

                                     
     551416 CGTTTCACCAGCTCGGTACGGATGG
          1 CGTTTCACCAGCTCGGTACGGATGG

     551441 GCTCTAGGAA


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.16, C:0.28, G:0.32, T:0.24


Consensus pattern (25 bp):   
CGTTTCACCAGCTCGGTACGGATGG

Left flanking sequence: Indices 550891 -- 551390
GTCGGCGTACGGTTATATAGAGAGGTATCTGGCTGCTATATACCACAACGTATCTTGGACACCAG
CTGCGAGATATCTATGTAACTACGGAGCTTTTCACCATGTGCGTGCGTGTATATATCGGGTAGTA
AGGTAGGTTGCCGTGTATGTAGTTGAGCGAAGGAAGGTAACTCGCCATGTTCTTGTGTTTCACCA
TGCTACGTACTTATTGAGGACTGATAGATACCACAGATGTGCCGCCAACAGTCACAGCGTAACTT
CCCAGTTACACTAGCATAGCCAACGCCAGCATAACCGTTTACCTCTCAACAATCACTTTGGATGA
TGTTGGAGTTTCACCTTGAAGGGGATGAACCCCAGCAACAACTGTCACTGACACAAATACGAGGG
AAGTGCGACTTACCCTACCTCAACAAGAATCGTCAACCACGGTTTATTGAAGCGATAAGTTGCTC
GTACTGAATGGACTTACGATATATGTCCACCTCCCAGCGTACAAC


Right flanking sequence: Indices 551441 -- 551940
GCTCTAGGAAGTTTTCTGGCTTACGATACCGGTAATAGCAACCGTGTGCATACGAAGGGTTCATG
AGGAAGCAACAGGAGAGTGGCATATAACGGTAGTGGGAAGGAGGATTGACCGGAGCCGCGGTCAG
TCTCCTCGATGACGATTGGTTACCGAACAGCTCGGGTAACTGGTGCCCGTAACGTGGGTTACCTT
GGGAACTTCCGATACTCAGTGTTTCCTGCACTCGTATCAGAGCGCGCCAGTGTTCCGGGCTCACC
TCTATATAACGGTGTAGGTGTATATATGCGCATAAGTACGCTATTCGCCCACGACCATGTTGGGC
CCTTCCCTTGAGCATCAGGGTCGGGATGCATTCCTACACGGTCCACCGCGGTTGTTACCGGGAGG
AACACTCTGTTATTGAGGTGGGGGCAGCTCACTGGTCTCTTGTTACCATGTAGGGTGTCGGCTAT
GTGCAGGTGACTTGCGGAATGACCATTAGCGACAGTGAGGCGTAT



Found at i:552221 original size:17 final size:17

Alignment explanation


    Indices: 552201--552234  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

     552191 TTTCTCGTTA

                             
     552201 CGCAACCTTACTAGTAC
          1 CGCAACCTTACTAGTAC

                             
     552218 CGCAACCTTACTAGTAC
          1 CGCAACCTTACTAGTAC

     552235 TGTGTATATT


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.29, C:0.35, G:0.12, T:0.24


Consensus pattern (17 bp):   
CGCAACCTTACTAGTAC

Left flanking sequence: Indices 551701 -- 552200
TCTATATAACGGTGTAGGTGTATATATGCGCATAAGTACGCTATTCGCCCACGACCATGTTGGGC
CCTTCCCTTGAGCATCAGGGTCGGGATGCATTCCTACACGGTCCACCGCGGTTGTTACCGGGAGG
AACACTCTGTTATTGAGGTGGGGGCAGCTCACTGGTCTCTTGTTACCATGTAGGGTGTCGGCTAT
GTGCAGGTGACTTGCGGAATGACCATTAGCGACAGTGAGGCGTATATAAGTACAGATAGTGACAG
GGAAGGCCCTCAATAGCAGTCTTTCTAGTTGCAGGCCTTAGACAGAGACATGGCGGGGACCACTT
GCAGTTGCGTTGCGCTTAAACACTCCTAGGCACGCCCAGCAAGTGCCGATAGACCCAGAGTCGAG
TTCAATGGGTGGGATCGGTGGGAACCGTTTCGGAGTGTGTTGCCACAACACCACTAGGCAATTCG
TTACACCAGTGGCTCTACCGCCGCCACTTTACTCCTTTCTCGTTA


Right flanking sequence: Indices 552235 -- 552734
TGTGTATATTACCTGAACCGCAACTCGGCTGTGCAGCTTGTGCCGGTGCAGGTGGCATGTCGGGA
AGGCCGTTGACTCGTATCAGCGGGGAGTCAGGTCGTAATACGAGGCTGAGTTACAGAGATGACAA
CCCCTTTCCAACACGACTGGTAGCAACCCCGAGCGGTTTACCGTAATACATAAAGTTCGGTGCCC
TCACCCCGTTGGCGGACCCTTGATCTATGTGGGACATAACGGCACCACCTCTACTCGTAACTATA
GAGCCGAATACGGCATCTACGTATCTCACAGCCTGCCGGGGTTCATAACCACAGGTCGGACGATA
CTGTAGCATTTCGATGGCTCGATTACCACGCGGCTTCTCGCCTGCAGCCAACAACCAGCCCGGTT
GACCTTGCATTACCTCTGTCTACCATACCATATATAATGCATATAAGTACTGAAAGCATCGCAAC
TTTCGTGACACCGGCAGCTACGCGGTTATATAGAGAGGTTCACCT



Found at i:552776 original size:23 final size:23

Alignment explanation


    Indices: 552750--552793  Score: 79
    Period size: 23  Copynumber: 1.9  Consensus size: 23

     552740 GACAGTAGGT

                    *              
     552750 TATTTGTATAGTGACAAATCCAC
          1 TATTTGTACAGTGACAAATCCAC

                                 
     552773 TATTTGTACAGTGACAAATCC
          1 TATTTGTACAGTGACAAATCC

     552794 TGTCCCTTGG


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  23   20  1.00

ACGTcount: A:0.34, C:0.18, G:0.14, T:0.34


Consensus pattern (23 bp):   
TATTTGTACAGTGACAAATCCAC

Left flanking sequence: Indices 552250 -- 552749
AACCGCAACTCGGCTGTGCAGCTTGTGCCGGTGCAGGTGGCATGTCGGGAAGGCCGTTGACTCGT
ATCAGCGGGGAGTCAGGTCGTAATACGAGGCTGAGTTACAGAGATGACAACCCCTTTCCAACACG
ACTGGTAGCAACCCCGAGCGGTTTACCGTAATACATAAAGTTCGGTGCCCTCACCCCGTTGGCGG
ACCCTTGATCTATGTGGGACATAACGGCACCACCTCTACTCGTAACTATAGAGCCGAATACGGCA
TCTACGTATCTCACAGCCTGCCGGGGTTCATAACCACAGGTCGGACGATACTGTAGCATTTCGAT
GGCTCGATTACCACGCGGCTTCTCGCCTGCAGCCAACAACCAGCCCGGTTGACCTTGCATTACCT
CTGTCTACCATACCATATATAATGCATATAAGTACTGAAAGCATCGCAACTTTCGTGACACCGGC
AGCTACGCGGTTATATAGAGAGGTTCACCTTGATAGACAGTAGGT


Right flanking sequence: Indices 552794 -- 553293
TGTCCCTTGGGTGCCATTCGCTGGAGTTACGAGTAGAGGAGCGCGGATGGATGGTCGCAGCACTA
AGGTCACCTTCAAAGCTTCCCACCCACTTTCCGTACATTCCAACCCACGTGCCGGTCGCTTCCTG
GCACGGTAATAGAAGTGATTTCATGTCACCAACGATATCTGGGGTTCAGCTCTCGCGCACCAGTC
GCGCTGACTTCCGCGACCGCGACCGCGACGACTACTTTATAGCAACGGCAACGGCAACGCAACGA
ACGGTTATGTTAGTTATATGGCGGTGGGGTGGGGTGGGGTCCTAGAGGTAGTCTGACTTGCGACC
CTGGTAAGAGTTTGAACTATTGACTCCATAGCTACGTACAACGTCGTTATATGGTATGGTGGTTT
CAATGTTGCAAGAATCAACCACTTTGTAGAGAATACAATAACGCTTGTCCACATGAAACCTGAAC
GTGTTGGTTTATACGATCAGTATTGAACTAGTACGCCCATTGGCC



Found at i:553865 original size:5 final size:5

Alignment explanation


    Indices: 553855--553892  Score: 62
    Period size: 5  Copynumber: 8.0  Consensus size: 5

     553845 CGCATGCATA

                                                           
     553855 TATGG TATGG TATGG -ATGG TATGG TATGG -ATGG TATGG
          1 TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG

     553893 GGGCCCCGAC


Statistics
Matches: 31,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
   4    8  0.26
   5   23  0.74

ACGTcount: A:0.21, C:0.00, G:0.42, T:0.37


Consensus pattern (5 bp):   
TATGG

Left flanking sequence: Indices 553355 -- 553854
CTGAGCCATCACCTTTCCACGAGGTCCGCGACTGGAGGGACAAGCGTGGTTGAGCCGATATGGTG
TAGCAGATAAACTTGATATGGTGTAGGTGTCCATAAAGGTGAGAGACAGTCCACTGAGCCGGAGA
GTCCAATGAACTCAACCAGCTGTATACGTCCTTCAGTACGGTTATTCCAACGTCCCTCAAACGCT
CCCCGCAACTAGGTAAACCGCAACACAAGGGACGCGTTGTCGCAGTGGGTCTCCTATGCAACCTT
GTTATACTAGTTACAGCGGGCTACTTGTCGCAGAGGAAGTAAGCCTTACTGAGCTGTGCGTGTCG
AGAGTCTACGTGGGCTCATCCCGTCAGTCCCAGCTGTGCACCGTCAGTCACTAACGTGTTGTACA
AAGAACCCGCGAACCACAACATTCGCCAACCTATATGTTCTACGAATACCCTCAGTTACACACGA
CAGGTCTCGCAGAAACCCAACGTAGTTGTCAACGCCGCATGCATA


Right flanking sequence: Indices 553893 -- 554392
GGGCCCCGACTTGTAGCAATTACGCTAGTAACCTGTAGCCGGCCGGTACTTAGTGGTCGTTCGGT
TTAGGGGAGCAGTCACCCACCCAGTCAGTATAGAAGGCATTAGGGAACTCAACTTCCCGTGATTC
CATCCACCTGATCCTGTGCGAGGTAAAGGATCGTTCCCTCATACGTTTGAGCTCCTAACGCATGG
TACTCTACTTGAGCGCACATACCTTGGTGGCATTACTCCCTTTTGGATAAACTCACCAAGAGGAA
GTAGTTTCACTGGGACGATAGAGTTTATGTTACCTACGTGAGAACATGATGGTGATACCCCCCAC
CCAGTCTACGTACCCCTACATCAAGCACCTGGATTACTGCAACACAACCCTTGGGAACTCGTACG
GTCAGACAGAACAACATGCCTTCCAGAAGGGATTACGAACCACAGAGTAAGGAGCACCACCAACC
ATCTACGAACCGCAATCCTCCATCATCGGCACGCGAAGAAAATGC



Found at i:553875 original size:9 final size:10

Alignment explanation


    Indices: 553855--553892  Score: 62
    Period size: 9  Copynumber: 4.0  Consensus size: 10

     553845 CGCATGCATA

                      
     553855 TATGGTATGG
          1 TATGGTATGG

                      
     553865 TATGG-ATGG
          1 TATGGTATGG

                      
     553874 TATGGTATGG
          1 TATGGTATGG

                      
     553884 -ATGGTATGG
          1 TATGGTATGG

     553893 GGGCCCCGAC


Statistics
Matches: 27,  Mismatches: 0, Indels: 3
        0.90            0.00        0.10

Matches are distributed among these distances:
   9   18  0.67
  10    9  0.33

ACGTcount: A:0.21, C:0.00, G:0.42, T:0.37


Consensus pattern (10 bp):   
TATGGTATGG

Left flanking sequence: Indices 553355 -- 553854
CTGAGCCATCACCTTTCCACGAGGTCCGCGACTGGAGGGACAAGCGTGGTTGAGCCGATATGGTG
TAGCAGATAAACTTGATATGGTGTAGGTGTCCATAAAGGTGAGAGACAGTCCACTGAGCCGGAGA
GTCCAATGAACTCAACCAGCTGTATACGTCCTTCAGTACGGTTATTCCAACGTCCCTCAAACGCT
CCCCGCAACTAGGTAAACCGCAACACAAGGGACGCGTTGTCGCAGTGGGTCTCCTATGCAACCTT
GTTATACTAGTTACAGCGGGCTACTTGTCGCAGAGGAAGTAAGCCTTACTGAGCTGTGCGTGTCG
AGAGTCTACGTGGGCTCATCCCGTCAGTCCCAGCTGTGCACCGTCAGTCACTAACGTGTTGTACA
AAGAACCCGCGAACCACAACATTCGCCAACCTATATGTTCTACGAATACCCTCAGTTACACACGA
CAGGTCTCGCAGAAACCCAACGTAGTTGTCAACGCCGCATGCATA


Right flanking sequence: Indices 553893 -- 554392
GGGCCCCGACTTGTAGCAATTACGCTAGTAACCTGTAGCCGGCCGGTACTTAGTGGTCGTTCGGT
TTAGGGGAGCAGTCACCCACCCAGTCAGTATAGAAGGCATTAGGGAACTCAACTTCCCGTGATTC
CATCCACCTGATCCTGTGCGAGGTAAAGGATCGTTCCCTCATACGTTTGAGCTCCTAACGCATGG
TACTCTACTTGAGCGCACATACCTTGGTGGCATTACTCCCTTTTGGATAAACTCACCAAGAGGAA
GTAGTTTCACTGGGACGATAGAGTTTATGTTACCTACGTGAGAACATGATGGTGATACCCCCCAC
CCAGTCTACGTACCCCTACATCAAGCACCTGGATTACTGCAACACAACCCTTGGGAACTCGTACG
GTCAGACAGAACAACATGCCTTCCAGAAGGGATTACGAACCACAGAGTAAGGAGCACCACCAACC
ATCTACGAACCGCAATCCTCCATCATCGGCACGCGAAGAAAATGC



Found at i:553875 original size:14 final size:14

Alignment explanation


    Indices: 553856--553892  Score: 74
    Period size: 14  Copynumber: 2.6  Consensus size: 14

     553846 GCATGCATAT

                          
     553856 ATGGTATGGTATGG
          1 ATGGTATGGTATGG

                          
     553870 ATGGTATGGTATGG
          1 ATGGTATGGTATGG

                     
     553884 ATGGTATGG
          1 ATGGTATGG

     553893 GGGCCCCGAC


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   23  1.00

ACGTcount: A:0.22, C:0.00, G:0.43, T:0.35


Consensus pattern (14 bp):   
ATGGTATGGTATGG

Left flanking sequence: Indices 553356 -- 553855
TGAGCCATCACCTTTCCACGAGGTCCGCGACTGGAGGGACAAGCGTGGTTGAGCCGATATGGTGT
AGCAGATAAACTTGATATGGTGTAGGTGTCCATAAAGGTGAGAGACAGTCCACTGAGCCGGAGAG
TCCAATGAACTCAACCAGCTGTATACGTCCTTCAGTACGGTTATTCCAACGTCCCTCAAACGCTC
CCCGCAACTAGGTAAACCGCAACACAAGGGACGCGTTGTCGCAGTGGGTCTCCTATGCAACCTTG
TTATACTAGTTACAGCGGGCTACTTGTCGCAGAGGAAGTAAGCCTTACTGAGCTGTGCGTGTCGA
GAGTCTACGTGGGCTCATCCCGTCAGTCCCAGCTGTGCACCGTCAGTCACTAACGTGTTGTACAA
AGAACCCGCGAACCACAACATTCGCCAACCTATATGTTCTACGAATACCCTCAGTTACACACGAC
AGGTCTCGCAGAAACCCAACGTAGTTGTCAACGCCGCATGCATAT


Right flanking sequence: Indices 553893 -- 554392
GGGCCCCGACTTGTAGCAATTACGCTAGTAACCTGTAGCCGGCCGGTACTTAGTGGTCGTTCGGT
TTAGGGGAGCAGTCACCCACCCAGTCAGTATAGAAGGCATTAGGGAACTCAACTTCCCGTGATTC
CATCCACCTGATCCTGTGCGAGGTAAAGGATCGTTCCCTCATACGTTTGAGCTCCTAACGCATGG
TACTCTACTTGAGCGCACATACCTTGGTGGCATTACTCCCTTTTGGATAAACTCACCAAGAGGAA
GTAGTTTCACTGGGACGATAGAGTTTATGTTACCTACGTGAGAACATGATGGTGATACCCCCCAC
CCAGTCTACGTACCCCTACATCAAGCACCTGGATTACTGCAACACAACCCTTGGGAACTCGTACG
GTCAGACAGAACAACATGCCTTCCAGAAGGGATTACGAACCACAGAGTAAGGAGCACCACCAACC
ATCTACGAACCGCAATCCTCCATCATCGGCACGCGAAGAAAATGC



Found at i:555252 original size:38 final size:37

Alignment explanation


    Indices: 555210--555283  Score: 130
    Period size: 38  Copynumber: 2.0  Consensus size: 37

     555200 GCTGGTAAGC

                                                  
     555210 AGCTCTAGCCTGGTACTATATATATATAAACCATATCT
          1 AGCTCTAGCCTGGTACTATATATATA-AAACCATATCT

                                      *         
     555248 AGCTCTAGCCTGGTACTATATATATACAACCATATC
          1 AGCTCTAGCCTGGTACTATATATATAAAACCATATC

     555284 CGCGTTAATT


Statistics
Matches: 35,  Mismatches: 1, Indels: 1
        0.95            0.03        0.03

Matches are distributed among these distances:
  37    9  0.26
  38   26  0.74

ACGTcount: A:0.34, C:0.23, G:0.11, T:0.32


Consensus pattern (37 bp):   
AGCTCTAGCCTGGTACTATATATATAAAACCATATCT

Left flanking sequence: Indices 554710 -- 555209
AGACAAGGGTTTCGTTCCGGTGCGATCTCAGCTCGCATTGCGCTCACCGAAAGTTGCTGAACCAC
GTACTAGGCGGGCGGGGCGGCAGTGAACCGCATTCTATTGGTAATTGCTTACCATGTAACAAGCG
ATTATGTACACGGTGGGCGAGTATCAGCCTACATGGGGCGGTTTATCGGAACGTGTTCTGGATAG
GATACGTCACCATGGCGAGAACGGTTGGCAACGGTTGACAGTCCCGAATATCATCGGCTGACATG
CATCGCGCACTTCCAGAGCAATGTACGGGGCCGCGACCCTATCCGGATGATCGTGCTCAGTCCTC
CGCAACCGTTCCCAACCACCCAGAGCCAACTACGAACCCGTAGCCCTCCTCTCACGGGGATGGGG
AACAACACAGCTACCCCGGCAACCAGTACCTTTCCGTAATACTGGCGAAGTGTGATAGTTGAACA
GACAGCGTGAAACAACCTGGTACCACCCATACGACGCTGGTAAGC


Right flanking sequence: Indices 555284 -- 555783
CGCGTTAATTATATAACCCAGAACTTTCCCCCTCATAACACCCCGCGCATCAACGGGGTTGTACG
GGGAGGACACTATACGGTAGTTTCACCCGGGGTTGGTGGTTTCCTTATACACGACTACCTTACCT
GGCTACATGGTGGGCGGAAACAACTAAACGCTGGCTCATACCCATAGTTGCGGGCGGGCAACTCA
CAGCCGACCTCGTTGCCAGACAGCTAGGAATGGGCAGGGACGGGGCTGGGCTAGGCAATACACAT
CTTTTCGGGGCATCTGTCCGGGGCAGCACAAGACACCGTGTACGGTCTTATTTGTTCCGCAAGCG
CCGATACGTCATGAACTCAACTCTATCTCTATCGGGCGTCACATCACATGTCAAGAGCAGTCCGG
GCAAAGCGATGAACACCGTGCGTGTTACCACGGCACACGGGTCTGGGCTATAACCCCTCTCTTGT
CGTCGTTGGGGCTGGACTGAGCTCTCTTCTGGTCTGTGCCTATTC



Found at i:557467 original size:12 final size:12

Alignment explanation


    Indices: 557434--557478  Score: 54
    Period size: 12  Copynumber: 3.8  Consensus size: 12

     557424 GGCGCAACAT

                  *  *  
     557434 GACGACGACGAC
          1 GACGACAACAAC

               *        
     557446 GACAACAACAAC
          1 GACGACAACAAC

             *          
     557458 GGCGACAACAAC
          1 GACGACAACAAC

                     
     557470 GACGACAAC
          1 GACGACAAC

     557479 GTAAACTACA


Statistics
Matches: 27,  Mismatches: 6, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  12   27  1.00

ACGTcount: A:0.44, C:0.33, G:0.22, T:0.00


Consensus pattern (12 bp):   
GACGACAACAAC

Left flanking sequence: Indices 556934 -- 557433
ACGAAAGCTCCACTGCGTATCCTGGTAGACGTGTTGCTGTGGTGGACCTCCTCTGCTCTTTCCCA
TGTCCGTCGTTGCAGTTGTGTTTAGACGCCCCTCCGTCGGGAAATCGAACTCAGTACTGTGGTTG
AATGTGGCCGGGGCGGACTAGCAGAAAACGCTCTGCTATTACGATATCTTCGTACTTGTTATGAA
GAAGTAGAGGTCCTCCCGCACTTGCTCTTAAGCAGCACCTGCACTATATAACGGGGTGCGGGTAC
TGGGGTGCTGTTCTCAGAAACAAGCAACAAACGACCCAGGTATGTGCCCTTGAGCGGGTCGACCC
TATTCCCACGATGCGTATGCACCACATGCACGGTAGCGCGGGTTGGTGGGCGGATCAGTAATTGG
GTGGGGTGTATCGATGCCGGCTACAGGCCCCACACCCCCCGTACATAGGCGTTATCTACCCGCCT
GCCTAGGCAACTCATCAGTGTTCTCTCATGATCGAGGCGCAACAT


Right flanking sequence: Indices 557479 -- 557978
GTAAACTACAACTACATATGGCGGGCGGGCCCGGTGGGGTGACGGTTAGTGGGGTGAGGTGAGGT
TAGTGAGGTGAGGTGAGGTGCGGTGGGGTTAGTGCGGTGCGTGCGTGCTGCCTGTTTTGATAGTG
TGATGTGCCCTATCTGATAGAAGTTGCTAGTGTTCCTTCCTTCGGAGATAGAACGTAATCTCAAT
TCGCATGCGTTTGTGGAGGAACGGCGCGGAAGGGATGATTATCTCTGTGCGGCATGTTCCGGCCC
TCCCTCCCAGATACTTACGTAGGGGTTCGTTGGCGTTGCTCACCGGGGATGTTGCCCTTAGGGCG
AACAAAAGATGGTCGGCATATGAAGTGTAGCGACACCCATGTTTGTGCCCTCTTTTTTCGGTGAG
ACGAGCGTTACATGCGGTCTATGGAGAATAAGTAGACGTTCATGAGAATAGGGCCGCCCAAAGGG
CGGGGAACTTACCTTACCCCGGGGATTGGGTAGGGTCTCGACCCA



Found at i:557541 original size:5 final size:5

Alignment explanation


    Indices: 557531--557568  Score: 51
    Period size: 5  Copynumber: 7.8  Consensus size: 5

     557521 CGGTTAGTGG

                           *                        *     
     557531 GGTGA GGTGA GGTTA -GTGA GGTGA GGTGA GGTGC GGTG
          1 GGTGA GGTGA GGTGA GGTGA GGTGA GGTGA GGTGA GGTG

     557569 GGGTTAGTGC


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
   4    3  0.10
   5   26  0.90

ACGTcount: A:0.16, C:0.03, G:0.58, T:0.24


Consensus pattern (5 bp):   
GGTGA

Left flanking sequence: Indices 557031 -- 557530
TCCGTCGGGAAATCGAACTCAGTACTGTGGTTGAATGTGGCCGGGGCGGACTAGCAGAAAACGCT
CTGCTATTACGATATCTTCGTACTTGTTATGAAGAAGTAGAGGTCCTCCCGCACTTGCTCTTAAG
CAGCACCTGCACTATATAACGGGGTGCGGGTACTGGGGTGCTGTTCTCAGAAACAAGCAACAAAC
GACCCAGGTATGTGCCCTTGAGCGGGTCGACCCTATTCCCACGATGCGTATGCACCACATGCACG
GTAGCGCGGGTTGGTGGGCGGATCAGTAATTGGGTGGGGTGTATCGATGCCGGCTACAGGCCCCA
CACCCCCCGTACATAGGCGTTATCTACCCGCCTGCCTAGGCAACTCATCAGTGTTCTCTCATGAT
CGAGGCGCAACATGACGACGACGACGACAACAACAACGGCGACAACAACGACGACAACGTAAACT
ACAACTACATATGGCGGGCGGGCCCGGTGGGGTGACGGTTAGTGG


Right flanking sequence: Indices 557569 -- 558068
GGGTTAGTGCGGTGCGTGCGTGCTGCCTGTTTTGATAGTGTGATGTGCCCTATCTGATAGAAGTT
GCTAGTGTTCCTTCCTTCGGAGATAGAACGTAATCTCAATTCGCATGCGTTTGTGGAGGAACGGC
GCGGAAGGGATGATTATCTCTGTGCGGCATGTTCCGGCCCTCCCTCCCAGATACTTACGTAGGGG
TTCGTTGGCGTTGCTCACCGGGGATGTTGCCCTTAGGGCGAACAAAAGATGGTCGGCATATGAAG
TGTAGCGACACCCATGTTTGTGCCCTCTTTTTTCGGTGAGACGAGCGTTACATGCGGTCTATGGA
GAATAAGTAGACGTTCATGAGAATAGGGCCGCCCAAAGGGCGGGGAACTTACCTTACCCCGGGGA
TTGGGTAGGGTCTCGACCCAGCTTGCCAGGAGTTGTCAGTTTGGTTATTAGGTGGCGGTGGCGGT
TGGGGCTGGCCGCACTTGAGGTAGCCCGGGGAGGGTGATATGCCG



Found at i:557546 original size:19 final size:19

Alignment explanation


    Indices: 557511--557562  Score: 77
    Period size: 19  Copynumber: 2.7  Consensus size: 19

     557501 GGGCGGGCCC

                *              *
     557511 GGTGGGGTGACGGTTAGTGG
          1 GGTGAGGTGA-GGTTAGTGA

                               
     557531 GGTGAGGTGAGGTTAGTGA
          1 GGTGAGGTGAGGTTAGTGA

                         
     557550 GGTGAGGTGAGGT
          1 GGTGAGGTGAGGT

     557563 GCGGTGGGGT


Statistics
Matches: 30,  Mismatches: 2, Indels: 1
        0.91            0.06        0.03

Matches are distributed among these distances:
  19   21  0.70
  20    9  0.30

ACGTcount: A:0.15, C:0.02, G:0.58, T:0.25


Consensus pattern (19 bp):   
GGTGAGGTGAGGTTAGTGA

Left flanking sequence: Indices 557011 -- 557510
CAGTTGTGTTTAGACGCCCCTCCGTCGGGAAATCGAACTCAGTACTGTGGTTGAATGTGGCCGGG
GCGGACTAGCAGAAAACGCTCTGCTATTACGATATCTTCGTACTTGTTATGAAGAAGTAGAGGTC
CTCCCGCACTTGCTCTTAAGCAGCACCTGCACTATATAACGGGGTGCGGGTACTGGGGTGCTGTT
CTCAGAAACAAGCAACAAACGACCCAGGTATGTGCCCTTGAGCGGGTCGACCCTATTCCCACGAT
GCGTATGCACCACATGCACGGTAGCGCGGGTTGGTGGGCGGATCAGTAATTGGGTGGGGTGTATC
GATGCCGGCTACAGGCCCCACACCCCCCGTACATAGGCGTTATCTACCCGCCTGCCTAGGCAACT
CATCAGTGTTCTCTCATGATCGAGGCGCAACATGACGACGACGACGACAACAACAACGGCGACAA
CAACGACGACAACGTAAACTACAACTACATATGGCGGGCGGGCCC


Right flanking sequence: Indices 557563 -- 558062
GCGGTGGGGTTAGTGCGGTGCGTGCGTGCTGCCTGTTTTGATAGTGTGATGTGCCCTATCTGATA
GAAGTTGCTAGTGTTCCTTCCTTCGGAGATAGAACGTAATCTCAATTCGCATGCGTTTGTGGAGG
AACGGCGCGGAAGGGATGATTATCTCTGTGCGGCATGTTCCGGCCCTCCCTCCCAGATACTTACG
TAGGGGTTCGTTGGCGTTGCTCACCGGGGATGTTGCCCTTAGGGCGAACAAAAGATGGTCGGCAT
ATGAAGTGTAGCGACACCCATGTTTGTGCCCTCTTTTTTCGGTGAGACGAGCGTTACATGCGGTC
TATGGAGAATAAGTAGACGTTCATGAGAATAGGGCCGCCCAAAGGGCGGGGAACTTACCTTACCC
CGGGGATTGGGTAGGGTCTCGACCCAGCTTGCCAGGAGTTGTCAGTTTGGTTATTAGGTGGCGGT
GGCGGTTGGGGCTGGCCGCACTTGAGGTAGCCCGGGGAGGGTGAT



Found at i:557551 original size:14 final size:14

Alignment explanation


    Indices: 557532--557582  Score: 57
    Period size: 14  Copynumber: 3.6  Consensus size: 14

     557522 GGTTAGTGGG

                          
     557532 GTGAGGTGAGGTTA
          1 GTGAGGTGAGGTTA

                        * 
     557546 GTGAGGTGAGGTGA
          1 GTGAGGTGAGGTTA

                *    *     
     557560 GGTGCGGTGGGGTTA
          1 -GTGAGGTGAGGTTA

               *    
     557575 GTGCGGTG
          1 GTGAGGTG

     557583 CGTGCGTGCT


Statistics
Matches: 32,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  14   21  0.66
  15   11  0.34

ACGTcount: A:0.14, C:0.04, G:0.57, T:0.25


Consensus pattern (14 bp):   
GTGAGGTGAGGTTA

Left flanking sequence: Indices 557032 -- 557531
CCGTCGGGAAATCGAACTCAGTACTGTGGTTGAATGTGGCCGGGGCGGACTAGCAGAAAACGCTC
TGCTATTACGATATCTTCGTACTTGTTATGAAGAAGTAGAGGTCCTCCCGCACTTGCTCTTAAGC
AGCACCTGCACTATATAACGGGGTGCGGGTACTGGGGTGCTGTTCTCAGAAACAAGCAACAAACG
ACCCAGGTATGTGCCCTTGAGCGGGTCGACCCTATTCCCACGATGCGTATGCACCACATGCACGG
TAGCGCGGGTTGGTGGGCGGATCAGTAATTGGGTGGGGTGTATCGATGCCGGCTACAGGCCCCAC
ACCCCCCGTACATAGGCGTTATCTACCCGCCTGCCTAGGCAACTCATCAGTGTTCTCTCATGATC
GAGGCGCAACATGACGACGACGACGACAACAACAACGGCGACAACAACGACGACAACGTAAACTA
CAACTACATATGGCGGGCGGGCCCGGTGGGGTGACGGTTAGTGGG


Right flanking sequence: Indices 557583 -- 558082
CGTGCGTGCTGCCTGTTTTGATAGTGTGATGTGCCCTATCTGATAGAAGTTGCTAGTGTTCCTTC
CTTCGGAGATAGAACGTAATCTCAATTCGCATGCGTTTGTGGAGGAACGGCGCGGAAGGGATGAT
TATCTCTGTGCGGCATGTTCCGGCCCTCCCTCCCAGATACTTACGTAGGGGTTCGTTGGCGTTGC
TCACCGGGGATGTTGCCCTTAGGGCGAACAAAAGATGGTCGGCATATGAAGTGTAGCGACACCCA
TGTTTGTGCCCTCTTTTTTCGGTGAGACGAGCGTTACATGCGGTCTATGGAGAATAAGTAGACGT
TCATGAGAATAGGGCCGCCCAAAGGGCGGGGAACTTACCTTACCCCGGGGATTGGGTAGGGTCTC
GACCCAGCTTGCCAGGAGTTGTCAGTTTGGTTATTAGGTGGCGGTGGCGGTTGGGGCTGGCCGCA
CTTGAGGTAGCCCGGGGAGGGTGATATGCCGGTTACGTGCTCGCC



Found at i:558147 original size:17 final size:17

Alignment explanation


    Indices: 558125--558158  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

     558115 GGACGGGTCC

                             
     558125 ACCTGTCCATCTCCATG
          1 ACCTGTCCATCTCCATG

                             
     558142 ACCTGTCCATCTCCATG
          1 ACCTGTCCATCTCCATG

     558159 TTGTTTCTTA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.18, C:0.41, G:0.12, T:0.29


Consensus pattern (17 bp):   
ACCTGTCCATCTCCATG

Left flanking sequence: Indices 557625 -- 558124
ATAGAAGTTGCTAGTGTTCCTTCCTTCGGAGATAGAACGTAATCTCAATTCGCATGCGTTTGTGG
AGGAACGGCGCGGAAGGGATGATTATCTCTGTGCGGCATGTTCCGGCCCTCCCTCCCAGATACTT
ACGTAGGGGTTCGTTGGCGTTGCTCACCGGGGATGTTGCCCTTAGGGCGAACAAAAGATGGTCGG
CATATGAAGTGTAGCGACACCCATGTTTGTGCCCTCTTTTTTCGGTGAGACGAGCGTTACATGCG
GTCTATGGAGAATAAGTAGACGTTCATGAGAATAGGGCCGCCCAAAGGGCGGGGAACTTACCTTA
CCCCGGGGATTGGGTAGGGTCTCGACCCAGCTTGCCAGGAGTTGTCAGTTTGGTTATTAGGTGGC
GGTGGCGGTTGGGGCTGGCCGCACTTGAGGTAGCCCGGGGAGGGTGATATGCCGGTTACGTGCTC
GCCAGAGGTAGCACAGGGTACAGAGCCAAAGGAGGGGACGGGTCC


Right flanking sequence: Indices 558159 -- 558658
TTGTTTCTTAGGTGGTGGTAGTGGTAATATGGAGCCTTTACCTCCTTCCCCAGAACCTTCATGGA
TTCTGGCCAACCCCAGGCTCACCGGATCCGGTTCCTGACCCCGTGGCCGAGCCTGATTCGGTTCC
GGATCCCGTGGCCAAGCCTGATTCAGTCCCGAACACAACGGCGGATGACCCCGGCCCTTCACGCA
CCGCCACTTCATCCTCTAGCATCTCGTTGTCTGATCTTTCCCATTTTATCGACCAGGATCTTCGG
GTCATGGACGTTCTGGATATAAAGGAAAAAGGTGCATATGAAACAATGGAAAGAGGTTTCCCGTC
ACATAGATCCGAACCTCACCTATTCCCACGCCAACTGTTGAATGAACGTGTGCTAGAGGCACTTG
ATGAAGGCGATCCGGGGACACAATGTTGGCGCACGCTCCTCTCGGCTGCATCCGCTCCGGAAAAC
CTGACCCAACGCGTATAACTCAGGGGTACATGGATTGAAAAGGAG



Found at i:558286 original size:30 final size:30

Alignment explanation


    Indices: 558252--558312  Score: 95
    Period size: 30  Copynumber: 2.0  Consensus size: 30

     558242 TCACCGGATC

                   *            *         
     558252 CGGTTCCTGACCCCGTGGCCGAGCCTGATT
          1 CGGTTCCGGACCCCGTGGCCAAGCCTGATT

                      *                   
     558282 CGGTTCCGGATCCCGTGGCCAAGCCTGATT
          1 CGGTTCCGGACCCCGTGGCCAAGCCTGATT

             
     558312 C
          1 C

     558313 AGTCCCGAAC


Statistics
Matches: 28,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  30   28  1.00

ACGTcount: A:0.11, C:0.36, G:0.30, T:0.23


Consensus pattern (30 bp):   
CGGTTCCGGACCCCGTGGCCAAGCCTGATT

Left flanking sequence: Indices 557752 -- 558251
CTTACGTAGGGGTTCGTTGGCGTTGCTCACCGGGGATGTTGCCCTTAGGGCGAACAAAAGATGGT
CGGCATATGAAGTGTAGCGACACCCATGTTTGTGCCCTCTTTTTTCGGTGAGACGAGCGTTACAT
GCGGTCTATGGAGAATAAGTAGACGTTCATGAGAATAGGGCCGCCCAAAGGGCGGGGAACTTACC
TTACCCCGGGGATTGGGTAGGGTCTCGACCCAGCTTGCCAGGAGTTGTCAGTTTGGTTATTAGGT
GGCGGTGGCGGTTGGGGCTGGCCGCACTTGAGGTAGCCCGGGGAGGGTGATATGCCGGTTACGTG
CTCGCCAGAGGTAGCACAGGGTACAGAGCCAAAGGAGGGGACGGGTCCACCTGTCCATCTCCATG
ACCTGTCCATCTCCATGTTGTTTCTTAGGTGGTGGTAGTGGTAATATGGAGCCTTTACCTCCTTC
CCCAGAACCTTCATGGATTCTGGCCAACCCCAGGCTCACCGGATC


Right flanking sequence: Indices 558313 -- 558812
AGTCCCGAACACAACGGCGGATGACCCCGGCCCTTCACGCACCGCCACTTCATCCTCTAGCATCT
CGTTGTCTGATCTTTCCCATTTTATCGACCAGGATCTTCGGGTCATGGACGTTCTGGATATAAAG
GAAAAAGGTGCATATGAAACAATGGAAAGAGGTTTCCCGTCACATAGATCCGAACCTCACCTATT
CCCACGCCAACTGTTGAATGAACGTGTGCTAGAGGCACTTGATGAAGGCGATCCGGGGACACAAT
GTTGGCGCACGCTCCTCTCGGCTGCATCCGCTCCGGAAAACCTGACCCAACGCGTATAACTCAGG
GGTACATGGATTGAAAAGGAGCTTGCCAAAGCCCGAAACGAGTTATTTCAACATTACCTATGACG
TAACGGGGCGGGACATGAATTGCGACATGTGCAACAGGGGCGGCGGAACATGATGCAATGGAAAC
GAATAGACATATAGACGTGTTAAGAGACCGATTGGAGTTGTGCAC



Found at i:560070 original size:18 final size:18

Alignment explanation


    Indices: 560047--560084  Score: 76
    Period size: 18  Copynumber: 2.1  Consensus size: 18

     560037 TGGGGAACAA

                              
     560047 CGACTACGTATGCCCCAG
          1 CGACTACGTATGCCCCAG

                              
     560065 CGACTACGTATGCCCCAG
          1 CGACTACGTATGCCCCAG

              
     560083 CG
          1 CG

     560085 GGAACTAGGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   20  1.00

ACGTcount: A:0.21, C:0.39, G:0.24, T:0.16


Consensus pattern (18 bp):   
CGACTACGTATGCCCCAG

Left flanking sequence: Indices 559547 -- 560046
ATATCCACACAACCACCTATATAGTTGTTAACGGTGGACGCCGTGTTAGATAGAACCACGCTAGT
ATATAGTGGTGGGCTGGGGCAACTACCCGGCTATACGCCCACCCCACCCCACGTCATCTTCGAAG
TTACTTGGGGCCGTTCAGCGGCGTGTTTCGATTTCCTATTCCTAGTTGACGAAGGATTCCCGTAG
TCATTTGTCTTTCTGGGTGCCGGGTGGGCCATGTGCCATATACACCGACCGATACAGTTCATATT
GTTTCTGACTGTACCCTGCTTCACCGGGCAGAGTGCGGAACAAGCCAAGCAGACTACCATATAGT
ATCTATCGGTCTCACGCGGTTTCACGGTAGATAGCCGGCTACTTACCCACCCAAGTTGATTGACG
AATTACTCTGTTCCTATGTACTGCAGAGATGTAGTTGAAGTTGACGGCGACCTTAGGACGGGGGA
CCCTGGGGGGTGCTGCCCCTATACGGCCCGAAGGATGGGGAACAA


Right flanking sequence: Indices 560085 -- 560584
GGAACTAGGACTAGTTACCCCAAGTTGATTGACTAACTGAGACGAATAGTCAGAATAGTCAATAC
CCGCGTCGGCGGAGCAAGTAGCGTCGGCCGGAGCCAGTAAGCAGTAAGGAAGGCCGCGTTGTTAC
AAGTAGCGTAAGCGACCATTCCCGCTTCGCGCACCAAGGAGCCCATGCGGACCACCCGCTGCGCA
GGCGTTTATTGACTACCTTGACAACGGAATGAATCACGTAACATGACGTAAAGTGTTCCGTACAA
CTACATAGAGCGAGCGTTTACCAACTATTTCCGGGCCCGTTCCGGGGGTGGGCGGTATCTTGCAC
CAGGGCATGGAATCTTCCACCTGCCTGGTAAGTCTGCCCGGACAGAGAATCGTCCCCGCGCACGC
GCATGCGTGACTTGTTCCTCTACTTGAAGATCTGAACTCTGTCGTACGCGCCATGGTATTTGTGG
GTGTTATGCAGTACATAACACGAACGGCTTCTTCATTGAACGTCT



Found at i:560175 original size:18 final size:19

Alignment explanation


    Indices: 560152--560188  Score: 58
    Period size: 19  Copynumber: 2.0  Consensus size: 19

     560142 GTCAATACCC

                               
     560152 GCGTCGG-CGGAGCAAGTA
          1 GCGTCGGCCGGAGCAAGTA

                          *    
     560170 GCGTCGGCCGGAGCCAGTA
          1 GCGTCGGCCGGAGCAAGTA

     560189 AGCAGTAAGG


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    7  0.41
  19   10  0.59

ACGTcount: A:0.19, C:0.27, G:0.43, T:0.11


Consensus pattern (19 bp):   
GCGTCGGCCGGAGCAAGTA

Left flanking sequence: Indices 559652 -- 560151
ACCCCACCCCACGTCATCTTCGAAGTTACTTGGGGCCGTTCAGCGGCGTGTTTCGATTTCCTATT
CCTAGTTGACGAAGGATTCCCGTAGTCATTTGTCTTTCTGGGTGCCGGGTGGGCCATGTGCCATA
TACACCGACCGATACAGTTCATATTGTTTCTGACTGTACCCTGCTTCACCGGGCAGAGTGCGGAA
CAAGCCAAGCAGACTACCATATAGTATCTATCGGTCTCACGCGGTTTCACGGTAGATAGCCGGCT
ACTTACCCACCCAAGTTGATTGACGAATTACTCTGTTCCTATGTACTGCAGAGATGTAGTTGAAG
TTGACGGCGACCTTAGGACGGGGGACCCTGGGGGGTGCTGCCCCTATACGGCCCGAAGGATGGGG
AACAACGACTACGTATGCCCCAGCGACTACGTATGCCCCAGCGGGAACTAGGACTAGTTACCCCA
AGTTGATTGACTAACTGAGACGAATAGTCAGAATAGTCAATACCC


Right flanking sequence: Indices 560189 -- 560688
AGCAGTAAGGAAGGCCGCGTTGTTACAAGTAGCGTAAGCGACCATTCCCGCTTCGCGCACCAAGG
AGCCCATGCGGACCACCCGCTGCGCAGGCGTTTATTGACTACCTTGACAACGGAATGAATCACGT
AACATGACGTAAAGTGTTCCGTACAACTACATAGAGCGAGCGTTTACCAACTATTTCCGGGCCCG
TTCCGGGGGTGGGCGGTATCTTGCACCAGGGCATGGAATCTTCCACCTGCCTGGTAAGTCTGCCC
GGACAGAGAATCGTCCCCGCGCACGCGCATGCGTGACTTGTTCCTCTACTTGAAGATCTGAACTC
TGTCGTACGCGCCATGGTATTTGTGGGTGTTATGCAGTACATAACACGAACGGCTTCTTCATTGA
ACGTCTCACCTTTGTGCTGTTCAGTAGTTGCGATATGGGATTCCTTTTTCGAGTTGCCAACCGCA
CAGGGGGGCGTATCCCACAAATATTCCATCAGCTGCTACAGCATC



Found at i:562372 original size:16 final size:16

Alignment explanation


    Indices: 562351--562383  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

     562341 GAAACCCGAT

                            
     562351 ACCGAATCCGCCCACC
          1 ACCGAATCCGCCCACC

                            
     562367 ACCGAATCCGCCCACC
          1 ACCGAATCCGCCCACC

             
     562383 A
          1 A

     562384 TATAGAGTCG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.27, C:0.55, G:0.12, T:0.06


Consensus pattern (16 bp):   
ACCGAATCCGCCCACC

Left flanking sequence: Indices 561851 -- 562350
ATGCTTGCATGTTAGAGCTCTACAACCCATATGGCACGTGTCTCATATCAGGATGGGTTACGAAG
TGGGGCGCTAACGCGGTTTAATAACAACGTCGGCGTATGGTATGGCACCGAACCCAGGGTTAGAC
CATACTGAATCGACCGAATAAGGGAGCCAACTGACGTAGCCAACTAGATGTAACGAGTTACCAGT
GGGGAACGAGCAGTTACCCGTAGTGCCCACCCAATTATCAAGAACATTTCGTTGAGTTACCCAAC
GCCAACCCGAGTAATCGCGCCATGCGGGCATGTTCCGTATTTGTTTCGGTAGCAACGCTGGTTAT
TACTTATGATGTTTCGGCGATTACGTAACCTCCTCATACTCTGTTGCTTTCGGCAACCTCCACCC
GCCCCCGATTACTTGACTGACTTATTGAACTCCTTCCTACGGGCTTGTTGATCCAACCCACCATA
TGTACTAGATCACACTCGCCCGGCACCGGCCATACGAAACCCGAT


Right flanking sequence: Indices 562384 -- 562883
TATAGAGTCGTCAAAGGAAGGCGATCGTGATATGTACGGTGCATTCGCACATGGTTTCTGCCCTT
CCCACCCAGCACCCGGTGTTACTTGTAGGGAGGGTTGGGAAAGGTGGTATAGCGCAGGCGTACAT
CTTGTTTGTTTGTTCCTCGATCGAGGTAACCGACAGGTTCATGTTGCTATCAGTCAGTGGGCGGA
GGGCGACCAAGGGGAGCGGGAACAACGTGCTATCAGTCAGTGGGTGGAGGGCGACCAAGGGGAGC
GGGAACAACGAAGCACCTGTAGGGTGGGGAACTACGTACTTGAGTTACCCCAGTTACCCCGGTGG
GCCAGGATAGATAAGCCCGGCGTACACGGGTGATCCACGGGAGTGACCATGTGCTAGCGGACGGT
GGCCTTTGTAACTGCGAGCGAAGCGGTGGACAACTACCCGGCTATACCCAGCCCTAGCGGCCCCA
CCGTGCAATAACGCGCCCCACCTTGATATCACGCCCCACATACGG



Found at i:562629 original size:48 final size:48

Alignment explanation


    Indices: 562558--562653  Score: 183
    Period size: 48  Copynumber: 2.0  Consensus size: 48

     562548 AGGTTCATGT

                                                            
     562558 TGCTATCAGTCAGTGGGCGGAGGGCGACCAAGGGGAGCGGGAACAACG
          1 TGCTATCAGTCAGTGGGCGGAGGGCGACCAAGGGGAGCGGGAACAACG

                             *                              
     562606 TGCTATCAGTCAGTGGGTGGAGGGCGACCAAGGGGAGCGGGAACAACG
          1 TGCTATCAGTCAGTGGGCGGAGGGCGACCAAGGGGAGCGGGAACAACG

     562654 AAGCACCTGT


Statistics
Matches: 47,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  48   47  1.00

ACGTcount: A:0.25, C:0.20, G:0.44, T:0.11


Consensus pattern (48 bp):   
TGCTATCAGTCAGTGGGCGGAGGGCGACCAAGGGGAGCGGGAACAACG

Left flanking sequence: Indices 562058 -- 562557
GTTACCCGTAGTGCCCACCCAATTATCAAGAACATTTCGTTGAGTTACCCAACGCCAACCCGAGT
AATCGCGCCATGCGGGCATGTTCCGTATTTGTTTCGGTAGCAACGCTGGTTATTACTTATGATGT
TTCGGCGATTACGTAACCTCCTCATACTCTGTTGCTTTCGGCAACCTCCACCCGCCCCCGATTAC
TTGACTGACTTATTGAACTCCTTCCTACGGGCTTGTTGATCCAACCCACCATATGTACTAGATCA
CACTCGCCCGGCACCGGCCATACGAAACCCGATACCGAATCCGCCCACCACCGAATCCGCCCACC
ATATAGAGTCGTCAAAGGAAGGCGATCGTGATATGTACGGTGCATTCGCACATGGTTTCTGCCCT
TCCCACCCAGCACCCGGTGTTACTTGTAGGGAGGGTTGGGAAAGGTGGTATAGCGCAGGCGTACA
TCTTGTTTGTTTGTTCCTCGATCGAGGTAACCGACAGGTTCATGT


Right flanking sequence: Indices 562654 -- 563153
AAGCACCTGTAGGGTGGGGAACTACGTACTTGAGTTACCCCAGTTACCCCGGTGGGCCAGGATAG
ATAAGCCCGGCGTACACGGGTGATCCACGGGAGTGACCATGTGCTAGCGGACGGTGGCCTTTGTA
ACTGCGAGCGAAGCGGTGGACAACTACCCGGCTATACCCAGCCCTAGCGGCCCCACCGTGCAATA
ACGCGCCCCACCTTGATATCACGCCCCACATACGGTTCGGGGTTCGCAAAGCGTGCACGCACAGG
GGCAGCGAGGATGCGGGGAAGGGACCCCACTAAGGCTATGACACGGCTCCAGTCCAATCACCCAT
GCCAGCGATTTTCGTACCAATCAGCCATGCCAGCGTCACATACTCTGGTCTGGTAAGTGTTGTTT
CGCTGAGCTTTGCCTACAGCCCAGCCAGCGTCACTACGTATTTGTTGTTTCGCCCACGACGCGAA
GTTGGCTTGGCTTGGCTTGGCTTGGCCCCCACCCCACCTCAATAA



Found at i:563120 original size:5 final size:5

Alignment explanation


    Indices: 563110--563134  Score: 50
    Period size: 5  Copynumber: 5.0  Consensus size: 5

     563100 CGACGCGAAG

                                         
     563110 TTGGC TTGGC TTGGC TTGGC TTGGC
          1 TTGGC TTGGC TTGGC TTGGC TTGGC

     563135 CCCCACCCCA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.00, C:0.20, G:0.40, T:0.40


Consensus pattern (5 bp):   
TTGGC

Left flanking sequence: Indices 562610 -- 563109
ATCAGTCAGTGGGTGGAGGGCGACCAAGGGGAGCGGGAACAACGAAGCACCTGTAGGGTGGGGAA
CTACGTACTTGAGTTACCCCAGTTACCCCGGTGGGCCAGGATAGATAAGCCCGGCGTACACGGGT
GATCCACGGGAGTGACCATGTGCTAGCGGACGGTGGCCTTTGTAACTGCGAGCGAAGCGGTGGAC
AACTACCCGGCTATACCCAGCCCTAGCGGCCCCACCGTGCAATAACGCGCCCCACCTTGATATCA
CGCCCCACATACGGTTCGGGGTTCGCAAAGCGTGCACGCACAGGGGCAGCGAGGATGCGGGGAAG
GGACCCCACTAAGGCTATGACACGGCTCCAGTCCAATCACCCATGCCAGCGATTTTCGTACCAAT
CAGCCATGCCAGCGTCACATACTCTGGTCTGGTAAGTGTTGTTTCGCTGAGCTTTGCCTACAGCC
CAGCCAGCGTCACTACGTATTTGTTGTTTCGCCCACGACGCGAAG


Right flanking sequence: Indices 563135 -- 563634
CCCCACCCCACCTCAATAACAACACTTAACAACACGTCACCTTGGTGTGGTGTTGGCTCCATATA
CTCATTTGTATATATACTGGTGAAACTGTGAGCGAACCCAGTTATTGACGGTGGGCGTGCCCTCT
CTATATAACCCCGAAGTTTCCGTGACGCGAGATGTTGTGGGCGACGAGGGTGAAGCGGGGACAAG
TGGGGTGGGAACAGTTCGGTTGTGCAACAATCCTACACGGCGCGTTAATGCTGGACCTCGCTCGC
CAGCGGAAACCGAACCATGCTGGGCTGGCGTATGTTGTCCAAGGGTGTGGGGGGAGAAGGTGTAG
GTGGGGCGTGTAGGTTACGGTTGGTTGTTAGTCGACGCTCATATCTACGTATATTCCAACTCCTC
CTCCCAACTCCTCCTTTTTGTTGTGGGTGAACTACGCAACTGATACAATCCCTACGTGTATTACG
GTTCAGGGGGGCATGCAGCTCAACAATCCCTACGTGTACGGTGTT



Found at i:563533 original size:13 final size:13

Alignment explanation


    Indices: 563515--563539  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

     563505 TACGTATATT

                         
     563515 CCAACTCCTCCTC
          1 CCAACTCCTCCTC

                        
     563528 CCAACTCCTCCT
          1 CCAACTCCTCCT

     563540 TTTTGTTGTG


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.16, C:0.60, G:0.00, T:0.24


Consensus pattern (13 bp):   
CCAACTCCTCCTC

Left flanking sequence: Indices 563015 -- 563514
CACATACTCTGGTCTGGTAAGTGTTGTTTCGCTGAGCTTTGCCTACAGCCCAGCCAGCGTCACTA
CGTATTTGTTGTTTCGCCCACGACGCGAAGTTGGCTTGGCTTGGCTTGGCTTGGCCCCCACCCCA
CCTCAATAACAACACTTAACAACACGTCACCTTGGTGTGGTGTTGGCTCCATATACTCATTTGTA
TATATACTGGTGAAACTGTGAGCGAACCCAGTTATTGACGGTGGGCGTGCCCTCTCTATATAACC
CCGAAGTTTCCGTGACGCGAGATGTTGTGGGCGACGAGGGTGAAGCGGGGACAAGTGGGGTGGGA
ACAGTTCGGTTGTGCAACAATCCTACACGGCGCGTTAATGCTGGACCTCGCTCGCCAGCGGAAAC
CGAACCATGCTGGGCTGGCGTATGTTGTCCAAGGGTGTGGGGGGAGAAGGTGTAGGTGGGGCGTG
TAGGTTACGGTTGGTTGTTAGTCGACGCTCATATCTACGTATATT


Right flanking sequence: Indices 563540 -- 564039
TTTTGTTGTGGGTGAACTACGCAACTGATACAATCCCTACGTGTATTACGGTTCAGGGGGGCATG
CAGCTCAACAATCCCTACGTGTACGGTGTTCCTGTGACCGTCCATGTGCAGGGGATGGTGGGCCC
AAGTAACCCTTCCCACAACCCACCAACCCCGGGCCAAGGGGGGGCTTATTTATATACGGTAGTTG
ATGCGGGTATAACGGCCCCCGTACAACGGTAAGTTCCCTTGGGAAATAGTTGTGATCAAAGTCCC
CCGAACCCCCACGGTGCCACAGGATCTCCGTAGCCTTCCACACATGGTTCCCCACGGTGCCACAG
GATCTCCGTAGCCTTCCAACATGGTTTATATGGGCAACCCACCGAACGACTTCAACCATATCGTA
GAAATGGAATGCCCTTATTGACCGCTGTCTTGAACTTTGATACTTCAAAGGCGAAGCGGATACAT
ACATACTTGGCGCCGGGGGGGGAACTCCAAGGCCAATATTCTATA



Found at i:563867 original size:43 final size:42

Alignment explanation


    Indices: 563806--563890  Score: 161
    Period size: 43  Copynumber: 2.0  Consensus size: 42

     563796 TCCCCCGAAC

                                                       
     563806 CCCCACGGTGCCACAGGATCTCCGTAGCCTTCCACACATGGTT
          1 CCCCACGGTGCCACAGGATCTCCGTAGCCTTCCA-ACATGGTT

                                                      
     563849 CCCCACGGTGCCACAGGATCTCCGTAGCCTTCCAACATGGTT
          1 CCCCACGGTGCCACAGGATCTCCGTAGCCTTCCAACATGGTT

     563891 TATATGGGCA


Statistics
Matches: 42,  Mismatches: 0, Indels: 1
        0.98            0.00        0.02

Matches are distributed among these distances:
  42    8  0.19
  43   34  0.81

ACGTcount: A:0.19, C:0.39, G:0.21, T:0.21


Consensus pattern (42 bp):   
CCCCACGGTGCCACAGGATCTCCGTAGCCTTCCAACATGGTT

Left flanking sequence: Indices 563306 -- 563805
CGACGAGGGTGAAGCGGGGACAAGTGGGGTGGGAACAGTTCGGTTGTGCAACAATCCTACACGGC
GCGTTAATGCTGGACCTCGCTCGCCAGCGGAAACCGAACCATGCTGGGCTGGCGTATGTTGTCCA
AGGGTGTGGGGGGAGAAGGTGTAGGTGGGGCGTGTAGGTTACGGTTGGTTGTTAGTCGACGCTCA
TATCTACGTATATTCCAACTCCTCCTCCCAACTCCTCCTTTTTGTTGTGGGTGAACTACGCAACT
GATACAATCCCTACGTGTATTACGGTTCAGGGGGGCATGCAGCTCAACAATCCCTACGTGTACGG
TGTTCCTGTGACCGTCCATGTGCAGGGGATGGTGGGCCCAAGTAACCCTTCCCACAACCCACCAA
CCCCGGGCCAAGGGGGGGCTTATTTATATACGGTAGTTGATGCGGGTATAACGGCCCCCGTACAA
CGGTAAGTTCCCTTGGGAAATAGTTGTGATCAAAGTCCCCCGAAC


Right flanking sequence: Indices 563891 -- 564390
TATATGGGCAACCCACCGAACGACTTCAACCATATCGTAGAAATGGAATGCCCTTATTGACCGCT
GTCTTGAACTTTGATACTTCAAAGGCGAAGCGGATACATACATACTTGGCGCCGGGGGGGGAACT
CCAAGGCCAATATTCTATATTGGTAATTGCGCCAGCCAACTTGTAGAACGATCCTCCCTCTTGAT
GCCAAACGCCTTGCAACCGTCCTCGGGGCTAACGGCAACAAAGGATCCTGCTGCCCATTCATTGG
TGCCCGACCCCGGTCGAAAGCACACAAGTCCATCCTGACGTAACAAACTGGATTGACGTAAAGGT
GCTCGCGATCGGGTGCCCTGCCCGGGCTTTCTGTATTGCGTTCGCTAGTCACCGATCTTGATAGG
TGCGTTCGCTAGTCACCGTTCTTGATAGGCCGATAAGCTAGCCACGTCTGTTCCTCACACTGACT
GAAGCTCAACGCCGACGTGCCTATGGGAGTCAGGCCTAGATCTAT



Found at i:564294 original size:29 final size:29

Alignment explanation


    Indices: 564252--564309  Score: 107
    Period size: 29  Copynumber: 2.0  Consensus size: 29

     564242 CTTTCTGTAT

                                         
     564252 TGCGTTCGCTAGTCACCGATCTTGATAGG
          1 TGCGTTCGCTAGTCACCGATCTTGATAGG

                              *          
     564281 TGCGTTCGCTAGTCACCGTTCTTGATAGG
          1 TGCGTTCGCTAGTCACCGATCTTGATAGG

     564310 CCGATAAGCT


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   28  1.00

ACGTcount: A:0.16, C:0.24, G:0.28, T:0.33


Consensus pattern (29 bp):   
TGCGTTCGCTAGTCACCGATCTTGATAGG

Left flanking sequence: Indices 563752 -- 564251
CCCGTACAACGGTAAGTTCCCTTGGGAAATAGTTGTGATCAAAGTCCCCCGAACCCCCACGGTGC
CACAGGATCTCCGTAGCCTTCCACACATGGTTCCCCACGGTGCCACAGGATCTCCGTAGCCTTCC
AACATGGTTTATATGGGCAACCCACCGAACGACTTCAACCATATCGTAGAAATGGAATGCCCTTA
TTGACCGCTGTCTTGAACTTTGATACTTCAAAGGCGAAGCGGATACATACATACTTGGCGCCGGG
GGGGGAACTCCAAGGCCAATATTCTATATTGGTAATTGCGCCAGCCAACTTGTAGAACGATCCTC
CCTCTTGATGCCAAACGCCTTGCAACCGTCCTCGGGGCTAACGGCAACAAAGGATCCTGCTGCCC
ATTCATTGGTGCCCGACCCCGGTCGAAAGCACACAAGTCCATCCTGACGTAACAAACTGGATTGA
CGTAAAGGTGCTCGCGATCGGGTGCCCTGCCCGGGCTTTCTGTAT


Right flanking sequence: Indices 564310 -- 564809
CCGATAAGCTAGCCACGTCTGTTCCTCACACTGACTGAAGCTCAACGCCGACGTGCCTATGGGAG
TCAGGCCTAGATCTATGAGCGAGACCCTGTAGCGGTTGCGAGTGACCGTGATCGGTTTACGTGAC
TTTCCGCATCAACTCTATATGTGTGGATACGTGCCTCGTCCGCCTCCCGCGTGGAAAGCGAACTA
AGTACCGATCTCACTTGTGTCACCCTGTAGCCTTACGTGTATGTTGGTAGGGTAGGAAAGATCTA
ACACCACCGTTAGGGGGGAATACCCGAGCAGGCCTGGGCAATTTCTAACTAGCGGGTGCCGGAAT
AGCCCATACTTGTTGTTGGGATTCCCAGACCGGTGGGGAGCAGAGCCGTGACAGTTCCCACGTGT
TGTAGTTCGCCCGGCGGGCACACAGTCAGTGGCATGCCATGTAGCGTAATACGTTGAAACTAGTA
CGGAAACGTACGGGGCGTTCCCATCTAGTAGGGCTTACGTTGGTC



Found at i:564320 original size:29 final size:29

Alignment explanation


    Indices: 564259--564321  Score: 74
    Period size: 29  Copynumber: 2.2  Consensus size: 29

     564249 TATTGCGTTC

                                   *   **
     564259 GCTAGTCACCGATCTTGATAGGTGCGTTC
          1 GCTAGTCACCGATCTTGATAGGTCCGTAA

                       *                  
     564288 GCTAGTCACCGTTCTTGATAGG-CCGATAA
          1 GCTAGTCACCGATCTTGATAGGTCCG-TAA

                 
     564317 GCTAG
          1 GCTAG

     564322 CCACGTCTGT


Statistics
Matches: 29,  Mismatches: 4, Indels: 2
        0.83            0.11        0.06

Matches are distributed among these distances:
  28    2  0.07
  29   27  0.93

ACGTcount: A:0.21, C:0.24, G:0.27, T:0.29


Consensus pattern (29 bp):   
GCTAGTCACCGATCTTGATAGGTCCGTAA

Left flanking sequence: Indices 563759 -- 564258
AACGGTAAGTTCCCTTGGGAAATAGTTGTGATCAAAGTCCCCCGAACCCCCACGGTGCCACAGGA
TCTCCGTAGCCTTCCACACATGGTTCCCCACGGTGCCACAGGATCTCCGTAGCCTTCCAACATGG
TTTATATGGGCAACCCACCGAACGACTTCAACCATATCGTAGAAATGGAATGCCCTTATTGACCG
CTGTCTTGAACTTTGATACTTCAAAGGCGAAGCGGATACATACATACTTGGCGCCGGGGGGGGAA
CTCCAAGGCCAATATTCTATATTGGTAATTGCGCCAGCCAACTTGTAGAACGATCCTCCCTCTTG
ATGCCAAACGCCTTGCAACCGTCCTCGGGGCTAACGGCAACAAAGGATCCTGCTGCCCATTCATT
GGTGCCCGACCCCGGTCGAAAGCACACAAGTCCATCCTGACGTAACAAACTGGATTGACGTAAAG
GTGCTCGCGATCGGGTGCCCTGCCCGGGCTTTCTGTATTGCGTTC


Right flanking sequence: Indices 564322 -- 564821
CCACGTCTGTTCCTCACACTGACTGAAGCTCAACGCCGACGTGCCTATGGGAGTCAGGCCTAGAT
CTATGAGCGAGACCCTGTAGCGGTTGCGAGTGACCGTGATCGGTTTACGTGACTTTCCGCATCAA
CTCTATATGTGTGGATACGTGCCTCGTCCGCCTCCCGCGTGGAAAGCGAACTAAGTACCGATCTC
ACTTGTGTCACCCTGTAGCCTTACGTGTATGTTGGTAGGGTAGGAAAGATCTAACACCACCGTTA
GGGGGGAATACCCGAGCAGGCCTGGGCAATTTCTAACTAGCGGGTGCCGGAATAGCCCATACTTG
TTGTTGGGATTCCCAGACCGGTGGGGAGCAGAGCCGTGACAGTTCCCACGTGTTGTAGTTCGCCC
GGCGGGCACACAGTCAGTGGCATGCCATGTAGCGTAATACGTTGAAACTAGTACGGAAACGTACG
GGGCGTTCCCATCTAGTAGGGCTTACGTTGGTCAGATAACGCTTG



Found at i:565071 original size:16 final size:16

Alignment explanation


    Indices: 565050--565082  Score: 66
    Period size: 16  Copynumber: 2.1  Consensus size: 16

     565040 CCGTATTGGG

                            
     565050 CCCACCATCCCAAGTA
          1 CCCACCATCCCAAGTA

                            
     565066 CCCACCATCCCAAGTA
          1 CCCACCATCCCAAGTA

             
     565082 C
          1 C

     565083 GTAACCATGG


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   17  1.00

ACGTcount: A:0.30, C:0.52, G:0.06, T:0.12


Consensus pattern (16 bp):   
CCCACCATCCCAAGTA

Left flanking sequence: Indices 564550 -- 565049
GGTAGGGTAGGAAAGATCTAACACCACCGTTAGGGGGGAATACCCGAGCAGGCCTGGGCAATTTC
TAACTAGCGGGTGCCGGAATAGCCCATACTTGTTGTTGGGATTCCCAGACCGGTGGGGAGCAGAG
CCGTGACAGTTCCCACGTGTTGTAGTTCGCCCGGCGGGCACACAGTCAGTGGCATGCCATGTAGC
GTAATACGTTGAAACTAGTACGGAAACGTACGGGGCGTTCCCATCTAGTAGGGCTTACGTTGGTC
AGATAACGCTTGATATTCCCGGAGGACAGCACAAGCTTGAGTTTGCGAGAACCCCCACCGTACGT
CAATAAGCCTTCGGCTATTACGCCAGGTTCTAGTATAGCATTCTGGATGGGGCCGTGGCACCATA
GGAAAACAAGATTCGTTGCGTTGCCCTTGTACGGGGGGCGGCGTCGTATACTCCCTGGCTTTCCC
ACCATCCCCTATGTACGGGGCACACACACTTCGTACCGTATTGGG


Right flanking sequence: Indices 565083 -- 565582
GTAACCATGGGGTAAGGTGTGGGGTAAGGTAGTTGCCCGGTAGTTGCCGGCTACGTTGGTTGTTC
GGTTGGTATATAGATCGGTTGCACTAGCGAAGGCAGCCAGCATATAGGCAGATGTGTGTACCGTG
CTCAAGTGGTCGTTTGTACCGTGCTATCTCCATGTTGTATCAGTAAGCACGAGTGGTTTACGCAT
GACCCAATTCCTCAGTCGAGGTGGTCAATACGTACAGGCGATCGCTAAGCGGCTAGGCGGTAGCA
GTACCCCAGCAGCCCCAAGGTGGGAGTGCCGGGCGGGGACGCTCGCTGCGTGGCATGTACGGCAA
CGAGGATCCTTGCTGACTTCCCATCGGCGATATTCCTGCATTCTACGTATACGTAGCATACTAGT
ATACGCTGGTCGTATCAAGTGGCAGCACTCCGTGTTACATATGAGTGAGTGTGGGGCCTGCCTCG
ATCAACTACGCTTCGGATTGGTCTGCTGCGATCTCTAGTATATGT



Found at i:567125 original size:20 final size:19

Alignment explanation


    Indices: 567100--567138  Score: 69
    Period size: 20  Copynumber: 2.0  Consensus size: 19

     567090 GCATCCAAGC

                                
     567100 ATCATTAACGTAAGAGTAAG
          1 ATCATTAACGTAAG-GTAAG

                               
     567120 ATCATTAACGTAAGGTAAG
          1 ATCATTAACGTAAGGTAAG

     567139 GTCCTCCGGG


Statistics
Matches: 19,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  19    5  0.26
  20   14  0.74

ACGTcount: A:0.44, C:0.10, G:0.21, T:0.26


Consensus pattern (19 bp):   
ATCATTAACGTAAGGTAAG

Left flanking sequence: Indices 566600 -- 567099
CGCCACCCACTACCGCTACTGATGGGAACGAAACTGATCCTACCGGCACGTGTTCAGACCTTATC
GACCGCATCCACGAATACGTGTAGATTGGAACGATTCATGGGATGGGAGTGTCCCCTGCCTTGGT
CCGAGCCAAACCTAGGTAACTGACGTTAGGGCGACTACAAGACCCAAAGGGCGGGGTAAGGTAGT
ACAGAACCGTAAGGTTGTGGTTCCCCGCAGGGTACATATGGCGGGTAACTGGGGTAAGGGGCGGG
GTCGTTCCCCACCTGTAGGGTCCGTACTGAGTTCCCGCTACAGTACTGGTCGCCCTCACCTAGGC
GGGAAGCATCGGTCACTGGACCACTAGGAGCGGGAAGCAACCTGTTACATGAGCGTACTGGGTGG
GGTACAGTTCATAACCGTATACTAGGAGGAGCGTTGCTGGTTACCGAGGCCTTGTACTAGTGGTA
TGCGGGGGGCATATGGTTCGGGTCGCGTGCTTCAAGCATCCAAGC


Right flanking sequence: Indices 567139 -- 567638
GTCCTCCGGGAGGCGGACCCTCTAAGTATGGGCGATCGAACAGTTTGCGTAGTTGGCGGGTGGGT
AACCAACATCTTGCTGCTATTCTCTTGATAAGTGTCTGTTGTTCGAAGGGGATCTTAATATTGAA
TGAAGAAACGATAGTAGCTTGTTGTTTCATAGGCTTTACCATATTCAGTCAGAGGAGTTTGGGTA
GTTCTCTATACGCCACTTTAGATGGGAGAAGAGCAGCTATTCAGAGGGAATTGCAGCAATTACTC
AATCCGTTAGAAGTGGTTAAGCTGGAATCCAATGAACAACAGAACAACCTTAGGATCTGCTTGCG
TTCCTTGGAGCCGGAAATTGTTTCATCATTACTGGGGATCGCCCGCTGCGCGCCGAAGTGCCATT
TGACAGTGCAAGCTGTGTTATGCCGAAACCTTGCGGTGGAATTGGCCACACTGAACAATGCCATT
TCCGCCCGGCGAACCCGGCTTCGGGACGATCTAGTCACTGGGTTT



Found at i:577167 original size:17 final size:17

Alignment explanation


    Indices: 577145--577178  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

     577135 TCGTTCCCCC

                             
     577145 ACACATCACATCACATA
          1 ACACATCACATCACATA

                             
     577162 ACACATCACATCACATA
          1 ACACATCACATCACATA

     577179 TATATGACGC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.47, C:0.35, G:0.00, T:0.18


Consensus pattern (17 bp):   
ACACATCACATCACATA

Left flanking sequence: Indices 576645 -- 577144
CATAATGGCTCGGTTATTGAGGTGGGGCGGTGTAACGATCTTCTTCTATAAAACAGCATCAACAC
CAGGTGCAACGGTCCCGCCGATCATCCGCGACACGTGGGTGGGAAAGTACCATGTGTGCATGGGC
CGCTTAAGTGTCGTACGCGGGGGCATGAAACAACAAACCCGCCGATAGCCATAGACTCGTTACGA
ACTGCAGCAACCGAGCGCGTGTAACTAAGGGTTCGCCCGATCAGCAGGATAGTGGTTGTGTCGCC
TCTCCAGTATGAAGTACGAAACAACTACAAGCCGTCGTACCTTTTCTTATTGGTAGCGGCTGTTC
CGGGTCACGTAGATACTTGTGCCGGTTTACCTAGTAAGTCCCGTTATTGAGGTGGGGCGCCCACC
CTTGAGTATATTGAATTATTGGTCGTAACGGTTGTCGTTTACCCGGGTCAGCACTGAATACGAAG
GTTGCGCGGGGGGGTTATTGAGGTGGGGTAGCCGCTCGTTCCCCC


Right flanking sequence: Indices 577179 -- 577678
TATATGACGCCCTAGTAAGTCCCGTGTGTTTATCTCCAGTGCCGTCGTTTACCCGGGCATAATCA
ACGTATAGCGTTCGGTGCCGTTTCTAGTGCCGCTGACGTTGGTCCTGTGTGGTTGTCGGGGTTCC
CAAGCGCTGCCACTACACCAAGGAGAGCCAGTTCTAACGGTGTCGATGCGTGACCCTGTTGCGTC
GTGCCGGGAGTGCTGTGTTTCTGCGTTCGCCGTTGCCAGTATGGAAAGGGTAAAGCCCAGGTCAA
TTCCTGGCACCGGTCTGCCTGTTGGGTTGGGAGTTATTCCCTGTGCTGTCCCGCGTTGTGGCAGG
AGGGGTAGGTGGTCTATTCCGGTCTATAAGAAAGACAGGAGAACATGAGACACACCAGGGTTGTA
GCTGGGGGAAGCTTGTTCCCATGCGTTGTGCCGCAGTTCCCCGAGAGCGCCAAGGTGGTGTCCAG
ACAACACTACCCTACCGCGTCTGGATGGCCGCTTTGGAAGTGCTC



Found at i:581538 original size:31 final size:31

Alignment explanation


    Indices: 581500--581562  Score: 117
    Period size: 31  Copynumber: 2.0  Consensus size: 31

     581490 GATAAGTCAA

                                           
     581500 GTTGGGAGGTCGCACTCGGGTGCATATCCAC
          1 GTTGGGAGGTCGCACTCGGGTGCATATCCAC

                       *                   
     581531 GTTGGGAGGTCTCACTCGGGTGCATATCCAC
          1 GTTGGGAGGTCGCACTCGGGTGCATATCCAC

             
     581562 G
          1 G

     581563 CGCGGGACAT


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   31  1.00

ACGTcount: A:0.16, C:0.25, G:0.35, T:0.24


Consensus pattern (31 bp):   
GTTGGGAGGTCGCACTCGGGTGCATATCCAC

Left flanking sequence: Indices 581000 -- 581499
CACCTGGGTGGGCGGGGCTATTCCTCCCTGAAACGTTGTAGGGGAGTTTACGGTTGAACCGTTCA
CGACCAACCGGTCCAAGGCCGTGCACCCTTCCACCTGCTCAAGTGACGAAGGAACTGTTATTGAT
ACAGTAAGGTAGGTGAACTCGATCAGGGCGAAGACCGTAACCAAGTAATATGCGGTGCCGTGCCG
TGGTTTTCTGCTTACCATGATGCTGTCGCCTATACGAAACCGGTACCTGTGTAACTGCGTGCACA
ACGACTCAGTTATGCAAGATCCCTACCCTGGCTCCTCGGGCAGCGGTACACGTCGTGCGTGGGCG
AGGCCGGAACAGGTCGTTGTGATGTTGGTAGAGCTACGTTATTGAACTGATTCCCGATTCATATG
TATATGGGGTGGTTTCCAAAGCGTAACTACAATGACAGGCTGCAGCTTCGGTAAGCGGGGTGAGT
ACCCGTCTGGTTCTCACTGCACAATGTCCACAATCGATAAGTCAA


Right flanking sequence: Indices 581563 -- 582062
CGCGGGACATCGACTTGAGTCTCGCCCGCCGCGGCGTATCACCGAAGATTGCAGCGCTTGCAACC
CCATTGCCGGTAGGGGGAGCTACCTCTATCCAGTTCGCTTCGCTTACTCGGAGGTGTTCGCTTCG
CTTACTCGGGGGTGAATATATATCTTACAATACCTACTGCGTACTAACGCGCAGGAAAGGAACAA
TTCATTATGACAAGTAAGTAACGAGTGTACGTAGTCTGGGCGTAAGGTTACTTACTTGGTATTCG
GCGTAGAGTAGTGTGGTAACAGCATAGCTATTTCCACTAAGTAACAAACGCTTCATATGCACATA
GAGCCCCATTGAAGGGGTATGTGGGGTCGAAGGATGCCCATGAACAAGGGCAAAGTGACAGTTGG
TTCCACCGTTCCAGAGTTTGGCGCATTTACAAGTGGTGAACCATCCTCCTCCGTTTCCAATCAGG
GGGAGGAAGTGTTGAATTATACGCTGGGGTGGGAGAGTTGAGGTT



Found at i:581690 original size:23 final size:23

Alignment explanation


    Indices: 581660--581706  Score: 85
    Period size: 23  Copynumber: 2.0  Consensus size: 23

     581650 CCTCTATCCA

                                   
     581660 GTTCGCTTCGCTTACTCGGAGGT
          1 GTTCGCTTCGCTTACTCGGAGGT

                               *   
     581683 GTTCGCTTCGCTTACTCGGGGGT
          1 GTTCGCTTCGCTTACTCGGAGGT

             
     581706 G
          1 G

     581707 AATATATATC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.06, C:0.26, G:0.34, T:0.34


Consensus pattern (23 bp):   
GTTCGCTTCGCTTACTCGGAGGT

Left flanking sequence: Indices 581160 -- 581659
AAGACCGTAACCAAGTAATATGCGGTGCCGTGCCGTGGTTTTCTGCTTACCATGATGCTGTCGCC
TATACGAAACCGGTACCTGTGTAACTGCGTGCACAACGACTCAGTTATGCAAGATCCCTACCCTG
GCTCCTCGGGCAGCGGTACACGTCGTGCGTGGGCGAGGCCGGAACAGGTCGTTGTGATGTTGGTA
GAGCTACGTTATTGAACTGATTCCCGATTCATATGTATATGGGGTGGTTTCCAAAGCGTAACTAC
AATGACAGGCTGCAGCTTCGGTAAGCGGGGTGAGTACCCGTCTGGTTCTCACTGCACAATGTCCA
CAATCGATAAGTCAAGTTGGGAGGTCGCACTCGGGTGCATATCCACGTTGGGAGGTCTCACTCGG
GTGCATATCCACGCGCGGGACATCGACTTGAGTCTCGCCCGCCGCGGCGTATCACCGAAGATTGC
AGCGCTTGCAACCCCATTGCCGGTAGGGGGAGCTACCTCTATCCA


Right flanking sequence: Indices 581707 -- 582206
AATATATATCTTACAATACCTACTGCGTACTAACGCGCAGGAAAGGAACAATTCATTATGACAAG
TAAGTAACGAGTGTACGTAGTCTGGGCGTAAGGTTACTTACTTGGTATTCGGCGTAGAGTAGTGT
GGTAACAGCATAGCTATTTCCACTAAGTAACAAACGCTTCATATGCACATAGAGCCCCATTGAAG
GGGTATGTGGGGTCGAAGGATGCCCATGAACAAGGGCAAAGTGACAGTTGGTTCCACCGTTCCAG
AGTTTGGCGCATTTACAAGTGGTGAACCATCCTCCTCCGTTTCCAATCAGGGGGAGGAAGTGTTG
AATTATACGCTGGGGTGGGAGAGTTGAGGTTGCTTGGTTAAGCAACGATCAACGACCATAACCGC
ACACCTTCTGTATTGGTATGCAACCCGCTTGAGCTTTTCGCACCTTCTGCAGCGGAACATTGCAG
CTACTTCCTGCTCCTTTATACAACATAAGTGCATCATCTTCCCAG



Found at i:584830 original size:17 final size:17

Alignment explanation


    Indices: 584808--584841  Score: 68
    Period size: 17  Copynumber: 2.0  Consensus size: 17

     584798 ATGCAGCAGT

                             
     584808 TTGTTAGTACGATCATG
          1 TTGTTAGTACGATCATG

                             
     584825 TTGTTAGTACGATCATG
          1 TTGTTAGTACGATCATG

     584842 AACGCTCCAC


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.24, C:0.12, G:0.24, T:0.41


Consensus pattern (17 bp):   
TTGTTAGTACGATCATG

Left flanking sequence: Indices 584308 -- 584807
GCATTCAGGACTCCCAAGCGCATTCGACCTTGGTCATTGTGTTACCCACCGCCGGTAGCTTGTCT
GGCGCATCCGCTCCCGCCGGGCTGTCCTACGGTGCGAAGGTGCCGTGGTTTATGGATTCAAGAGT
GCAAGGTAAGCCGTGCTTTCAAGCTAGCTGAGCGTTGTACCCTGCCATGGCCGACAAGCGTCTGC
TTGCTGTTGCCGATATATATGGATAGTGAGACTCCATAGAGATCCGCTGCAATGATCGGGAATCG
CAGATTCCTGTAGAGAGGTAGGGGAACAATAGATCATGCAGGAGGGTTGCTGGGCGAACTAGTTA
CTATACCACTCTTCGTTCTAAGGATTCACCACTCCAACCACATATATCATCCGCTACGTCATGGG
CGATGGGCAGTAACGTTTTGTTTACCCACGCCCACCCCACCCCACCTCAATAACTAACTTGGGGC
CATCTGGTTGCGATTACGAAATGTACGGTCACAACATGCAGCAGT


Right flanking sequence: Indices 584842 -- 585341
AACGCTCCACCAGCACCCGGGACGTACCTTTCCGTTCTTTAGAAAGGGTTCTGCGATCAGTTGGG
CACAGCACTCAGGCGGGCCGAATCTGTTTTCCCATTTGTTACGTGGCGGGCTGTCCTTCCTAATA
AGCTACGGTGCCGGTGCGCATGAGCCTTTGCCCTGCGTGTTGTGTATGCAGGGTAGAGGTGCCGC
TGGCCCCGCTAGGCCTCCAACGTAGGGCAGAGGTGTAGTCCAGGACTCTCTCCCTTGTCGTACTG
CATACCGAAGTTACCTATTCTCACATAGAACAATATCCATCCTTCAGATCCACTGAGTTTGTAGT
TAGTGTATGTTGAGGCACAGTAAGCTGGTTCACCCCGCGGATTCCCTCCTCTCCGGCATCAACAT
CCTAATGCCCGGCATCATGCAGCAGGACACCCCCTCAGTAGCCACTAGTTCCTATCTTGTGATCA
TGTAGCACAGTCAGTACTTAGTTGCCCTGTTTCGTTAGAACCACT



Found at i:588735 original size:53 final size:53

Alignment explanation


    Indices: 588663--588775  Score: 226
    Period size: 53  Copynumber: 2.1  Consensus size: 53

     588653 AACTACCCTT

                                                                 
     588663 ATATACGATCAAGTACATTTACCCGTACTCGATAACCCTGCTCCAACCCTGCG
          1 ATATACGATCAAGTACATTTACCCGTACTCGATAACCCTGCTCCAACCCTGCG

                                                                 
     588716 ATATACGATCAAGTACATTTACCCGTACTCGATAACCCTGCTCCAACCCTGCG
          1 ATATACGATCAAGTACATTTACCCGTACTCGATAACCCTGCTCCAACCCTGCG

                   
     588769 ATATACG
          1 ATATACG

     588776 GTAGCGGCAA


Statistics
Matches: 60,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  53   60  1.00

ACGTcount: A:0.29, C:0.33, G:0.13, T:0.25


Consensus pattern (53 bp):   
ATATACGATCAAGTACATTTACCCGTACTCGATAACCCTGCTCCAACCCTGCG

Left flanking sequence: Indices 588163 -- 588662
GAAAGCATTTCCTTGGACCGCATATACATACGTATTTCATAACAATGTATTACCGCGTTCACTTG
TTAACCAACTGCTTACTGAATGAAAGAGAGGTTGTACGTATATAGCAGCCGGGCCGGGGGGTGGG
TGGTATATAGGCTTTCAAGCAACATCAGGTTACATATGGGTAGAGTGCTTCGGTTGCACTACAGG
TAGCGGCGTGTAGTAGCAACGAATTGCTTCTATGTAAAGGCGCTGGAGGAGACAAAGGTCACGTA
CGTCGGGAGGCTTCTTGCAACAACAACGGGCATCTGTAGCGACGCCACGGGTAGTGCATCGTTTT
ATATGATGGTTTATCGGTTCACTGAACTATCATGTCTGCCACACTTGAGAAATAGCTTGGCCATG
TAGCTACGTATTTGTTCTATGCCAAAGTCGAACGGATAGCCGGACAAGTCCGTATTCGGAGTATT
GTCAATTCCTGAACAGCATATGTAGTTGTATGAGCAACTACCCTT


Right flanking sequence: Indices 588776 -- 589275
GTAGCGGCAATAACATCTATGCGAAATGCGGTGCAACAGGCAAGTTGGCATGTTCTCACGAACAC
TCTTATGTACACGGTTTCAGCGTGTAGAGCTGGCGGAGATTCAACCAGTCCAATTACCTCTAGGT
CGCTACGGTGATTATGGTGGGCGTAAGAACCCGGGGAGTTGAGCGCGCTTCCTACCGTTACAAAG
GTATCGACTCCGTTACTTGATGTCTAGAATGCGGTTCACTTGTCTGAAAAGCAGCTTCAGCCATC
GCATGTTAACGGTACTAATAAACCTCGCATGTCACCTCCCAGTAACACATCCGCCGTCAGCAAGT
AGGTTATTCCATACGCGGCAACCATGGAACAACTTCATACATGTGCGCAGTATCGAAATATCGAT
ATATCTCACTCATCAGCAAGGGTTACCCGCACCACCAACCCAACCCCTCTTCGTCAATAGTACGG
TACGGTACGGTACGGTACGCAAAGCAGCAGTTACGGTGGGATGTG



Found at i:589235 original size:5 final size:5

Alignment explanation


    Indices: 589225--589249  Score: 50
    Period size: 5  Copynumber: 5.0  Consensus size: 5

     589215 TTCGTCAATA

                                         
     589225 GTACG GTACG GTACG GTACG GTACG
          1 GTACG GTACG GTACG GTACG GTACG

     589250 CAAAGCAGCA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   20  1.00

ACGTcount: A:0.20, C:0.20, G:0.40, T:0.20


Consensus pattern (5 bp):   
GTACG

Left flanking sequence: Indices 588725 -- 589224
CAAGTACATTTACCCGTACTCGATAACCCTGCTCCAACCCTGCGATATACGGTAGCGGCAATAAC
ATCTATGCGAAATGCGGTGCAACAGGCAAGTTGGCATGTTCTCACGAACACTCTTATGTACACGG
TTTCAGCGTGTAGAGCTGGCGGAGATTCAACCAGTCCAATTACCTCTAGGTCGCTACGGTGATTA
TGGTGGGCGTAAGAACCCGGGGAGTTGAGCGCGCTTCCTACCGTTACAAAGGTATCGACTCCGTT
ACTTGATGTCTAGAATGCGGTTCACTTGTCTGAAAAGCAGCTTCAGCCATCGCATGTTAACGGTA
CTAATAAACCTCGCATGTCACCTCCCAGTAACACATCCGCCGTCAGCAAGTAGGTTATTCCATAC
GCGGCAACCATGGAACAACTTCATACATGTGCGCAGTATCGAAATATCGATATATCTCACTCATC
AGCAAGGGTTACCCGCACCACCAACCCAACCCCTCTTCGTCAATA


Right flanking sequence: Indices 589250 -- 589749
CAAAGCAGCAGTTACGGTGGGATGTGCACACAAGTGCCGTTCGATTAGACGCGCCACGCATAGTA
TCGAGCGCAACCGCTTGCTGCGAGTCGTATCTTCGAATGTGTTGGCCCACTGGTTCCACCGGAAC
CCGCATACGTAAATGCTCATCATCCTTTACGATCATTATACCATCGGGAGTCATAGCCGGTAGCT
CGGGGGGAGTCCTAGCCGGTAGCTCGGGAGTCATAGCCGGTAGCATGAAGGATAGCCAGTAACCG
CATATGAAGGTGCACCGCATATACAGTGTTACAAAACGCGGCCCGCCCTATGTAGCCACAACGCT
ACTGAGTTGTTGCATGTGCGGAAGTCAGATGAAGCGGTTATCGCACATAACGAACTAGACGAAGG
AAAGCCTCACACGGTGCGGGTAGTTGACTAGAATACAACACGAACTCGCCTGGCAGCGTTCGGCC
GCCATGAGCGCTTGTGAGATGTGGGGGTAATCGTTCATATTGCAA



Found at i:589453 original size:24 final size:21

Alignment explanation


    Indices: 589423--589488  Score: 96
    Period size: 21  Copynumber: 3.0  Consensus size: 21

     589413 CATTATACCA

                                 
     589423 TCGGGAGTCATAGCCGGTAGC
          1 TCGGGAGTCATAGCCGGTAGC

                        *           
     589444 TCGGGGGGAGTCCTAGCCGGTAGC
          1 TC---GGGAGTCATAGCCGGTAGC

                                 
     589468 TCGGGAGTCATAGCCGGTAGC
          1 TCGGGAGTCATAGCCGGTAGC

     589489 ATGAAGGATA


Statistics
Matches: 40,  Mismatches: 2, Indels: 6
        0.83            0.04        0.12

Matches are distributed among these distances:
  21   20  0.50
  24   20  0.50

ACGTcount: A:0.17, C:0.24, G:0.41, T:0.18


Consensus pattern (21 bp):   
TCGGGAGTCATAGCCGGTAGC

Left flanking sequence: Indices 588923 -- 589422
TGGGCGTAAGAACCCGGGGAGTTGAGCGCGCTTCCTACCGTTACAAAGGTATCGACTCCGTTACT
TGATGTCTAGAATGCGGTTCACTTGTCTGAAAAGCAGCTTCAGCCATCGCATGTTAACGGTACTA
ATAAACCTCGCATGTCACCTCCCAGTAACACATCCGCCGTCAGCAAGTAGGTTATTCCATACGCG
GCAACCATGGAACAACTTCATACATGTGCGCAGTATCGAAATATCGATATATCTCACTCATCAGC
AAGGGTTACCCGCACCACCAACCCAACCCCTCTTCGTCAATAGTACGGTACGGTACGGTACGGTA
CGCAAAGCAGCAGTTACGGTGGGATGTGCACACAAGTGCCGTTCGATTAGACGCGCCACGCATAG
TATCGAGCGCAACCGCTTGCTGCGAGTCGTATCTTCGAATGTGTTGGCCCACTGGTTCCACCGGA
ACCCGCATACGTAAATGCTCATCATCCTTTACGATCATTATACCA


Right flanking sequence: Indices 589489 -- 589988
ATGAAGGATAGCCAGTAACCGCATATGAAGGTGCACCGCATATACAGTGTTACAAAACGCGGCCC
GCCCTATGTAGCCACAACGCTACTGAGTTGTTGCATGTGCGGAAGTCAGATGAAGCGGTTATCGC
ACATAACGAACTAGACGAAGGAAAGCCTCACACGGTGCGGGTAGTTGACTAGAATACAACACGAA
CTCGCCTGGCAGCGTTCGGCCGCCATGAGCGCTTGTGAGATGTGGGGGTAATCGTTCATATTGCA
ATAGGTTCGTACGGCGCCGGCTCAGTAGCGGCGTTAGTGTGCCCCGCTCAGCCAGTGCAGTAACT
GGTTACTGCCGTTTCATGCCCGCCACCATTGTACGGTATACGCGCCCACCAGGGGTCTCCAGGGG
AGGGGGGTTGCGGTAGTGAGTGTACAGGGGCCCGAAGGCGTACATAACGTTCCACCGTACAAAAT
CATGTGCCTCGCTCCGGCTCCTTTCAAGTGTTAGAGGGCGTTATA



Found at i:591061 original size:13 final size:13

Alignment explanation


    Indices: 591043--591068  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

     591033 TGCGAGTGTG

                         
     591043 ATCAACCTGTAGC
          1 ATCAACCTGTAGC

                         
     591056 ATCAACCTGTAGC
          1 ATCAACCTGTAGC

     591069 CATGTTTCCG


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.31, C:0.31, G:0.15, T:0.23


Consensus pattern (13 bp):   
ATCAACCTGTAGC

Left flanking sequence: Indices 590543 -- 591042
TAACAAGGTCAACCGGGCTGGTGTCTGTACACTTAGACTGCTCACCGCCTCCCTGCGCCACTTAG
TCCACCTGGTAAAGCCCACGACAACTAGTCCTCGTGTGGACGGTGCGGGCCTTTGTCTATGTAGC
CTCAATCGCCCTACGTTCCGGACAATATAGAGGTCACGTACGACCGTTCTGCGTAGCACATGAAT
CAACAACTCCGTCTATGTAGGTATGCTCCGACAATCAGATATGTGGCCCCACCGGCTGCGCCTAT
ACACGCCAGGTTCCGTTACCCTAGTACGGCGACTTTCAGTACGTCGGCTCCAGTCTGATACTGGC
TTTCGAGATGGATTTGTATCCGGAGCAAGCATTTAGACTGTTTTGCGGCCCGGGAGCGATACGGT
ATTATGAGATATCACACCCTGATGCGGGAAGCTTCGTGGGTTACACACCTCAATAGTCTGTTCTC
CTCGTCTGTTACAACTATTGAAAGTGGGTATGTGCTGCGAGTGTG


Right flanking sequence: Indices 591069 -- 591568
CATGTTTCCGACCAGTCGAGTTCGCTTATGTATCCTCTCCGATACTTGCTCCGTAGAACTATACC
TTTACCAATTACACCGTCGTTGATGTGGCTGGACCGGACAACTGGGTTATTCTGTGCGTTCCGGT
ACCTTTCCCTGTTGGGTTCGGGGCCCACCGTCAATAACTGTCTCTGGGTTCGGGGGCTGGCAGTG
GTTATTGACGTACGGTGGGGCTGTCGGTTCGCTGCCACATAGACGGACCGGCCGCATACTTGCAT
AACGAACTTGACGTGCCCGGGGTTGGCTCACTCGCAGCTTTGTTCCAGGTACAGAACAACCAGCG
ACTTCAGTATCGGAAGGCAGATTCCGGGAACTAGTTTCACTCGCAACTGTAGATGGGTAAGTCGG
AGGAATCGGTTCACACAACGGCAGGGCAGTCAGTCACTTCCAAGGCTCGCACCGCTTCCCAAACT
ACTTCAAATGTGGAATGCAAGCACAGTTAACAACATGGAGGGAAG



Found at i:600267 original size:20 final size:19

Alignment explanation


    Indices: 600242--600283  Score: 75
    Period size: 20  Copynumber: 2.2  Consensus size: 19

     600232 CGTAGACGAG

                                
     600242 GGTCAGTACGTGAAGGGTCA
          1 GGTCAGTACGTGAAGGG-CA

                               
     600262 GGTCAGTACGTGAAGGGCA
          1 GGTCAGTACGTGAAGGGCA

               
     600281 GGT
          1 GGT

     600284 TGGCCAACTC


Statistics
Matches: 22,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
  19    5  0.23
  20   17  0.77

ACGTcount: A:0.24, C:0.14, G:0.43, T:0.19


Consensus pattern (19 bp):   
GGTCAGTACGTGAAGGGCA

Left flanking sequence: Indices 599742 -- 600241
CAATAACACAAACCCTTTCCCGTTGCCCGGGACTATATCAAATCACCCTGGAACCTGCTATATCG
GCCTATACTACCGGGAGTATAGAACCGTGTTGAGAGATACGGAACTTCGCACCCCTCTATGACAC
CAGCACAGAGCATCTCGATTGGCCATAGACCCGTGGCCATGTGATACCCCATGAATTTCCCCTCT
ATGACGGGTTGAGGACCACTACCTTCTTGTATAAACCCGTGTTGAGAGATACCACTAGTTACGGA
ACCTCTTAGAAACCATCGGACGCATCGTCATAGAGTATAACACCGTGTTGAGAGATACCAATTCC
ACTTCCTTGTGTGTTGGGAATCGTATTCGCCAACCCCATGGTTCGGTATTTCAGAAGTGCACATT
CGCGCAGACCCTATCTCCTCCCCACCCACCCCCTATAGCCGTGCTTCCAGTCTATCTTACTGGTG
TCCAACACCGATACAGAAGCCTCATAACTGGATCCCGTAGACGAG


Right flanking sequence: Indices 600284 -- 600783
TGGCCAACTCAAGAGGGCTTCTAGTATGAATAGAGGTCGTCCAACCCCGGAACAACTGCATGGAA
CTGCAGGTACTTCGCTGTTCGATCGCTTCGCTCTCTCGTAGAAGTACAGACAAGAGAGGGGCGCT
CCTCCTCTCCCAACTACAAGTATCGTGGTACGGGTTCTGCTTCACCATCCCGAGGCGAGGAGCTG
CAAGTCACTGTGGCCAGGTGGAAGCCCCCTCTCTAACAAGTATCTCCAGACAGGTAGCTCGCTCC
CCCACATAGCAGCGAGGCTAGGCGATACATGCGTCTATAGCTGCAGGTCAGTACCTCTTCTCTAG
CTACAGGTCACTGTTGCCAGGTTATGCGTCTCTAGCTGCAGGAACTAGCTTCATAGTATCCACCT
TCCGACCAACCAAGAACAAAGGCTATAGCGATAACCCCCTGTACCCCTCTTTAGACAAGGAAGAC
TGTAGGAACTATGAGATCGAGTAGGAACCATCCCTATGCGAGGTA



Found at i:600897 original size:25 final size:23

Alignment explanation


    Indices: 600838--600907  Score: 88
    Period size: 22  Copynumber: 3.0  Consensus size: 23

     600828 AGCGATAAAC

                                   
     600838 CAGTTGCCCAGTAGCCCTATGC-
          1 CAGTTGCCCAGTAGCCCTATGCG

                    *               
     600860 CAGTTGCCAAGTAGCCCTATGCGG
          1 CAGTTGCCCAGTAGCCCTATGC-G

             *    *                 
     600884 ATAGTTTCCCAGTAGCCCTATGCG
          1 -CAGTTGCCCAGTAGCCCTATGCG

     600908 TCTATAGCTC


Statistics
Matches: 41,  Mismatches: 4, Indels: 4
        0.84            0.08        0.08

Matches are distributed among these distances:
  22   21  0.51
  24    1  0.02
  25   19  0.46

ACGTcount: A:0.20, C:0.31, G:0.24, T:0.24


Consensus pattern (23 bp):   
CAGTTGCCCAGTAGCCCTATGCG

Left flanking sequence: Indices 600338 -- 600837
ACTGCATGGAACTGCAGGTACTTCGCTGTTCGATCGCTTCGCTCTCTCGTAGAAGTACAGACAAG
AGAGGGGCGCTCCTCCTCTCCCAACTACAAGTATCGTGGTACGGGTTCTGCTTCACCATCCCGAG
GCGAGGAGCTGCAAGTCACTGTGGCCAGGTGGAAGCCCCCTCTCTAACAAGTATCTCCAGACAGG
TAGCTCGCTCCCCCACATAGCAGCGAGGCTAGGCGATACATGCGTCTATAGCTGCAGGTCAGTAC
CTCTTCTCTAGCTACAGGTCACTGTTGCCAGGTTATGCGTCTCTAGCTGCAGGAACTAGCTTCAT
AGTATCCACCTTCCGACCAACCAAGAACAAAGGCTATAGCGATAACCCCCTGTACCCCTCTTTAG
ACAAGGAAGACTGTAGGAACTATGAGATCGAGTAGGAACCATCCCTATGCGAGGTAGCAACTAGG
CTAGTATCCCTATGCGTCTATAGCTGCCCAGGAGAAGCGATAAAC


Right flanking sequence: Indices 600908 -- 601407
TCTATAGCTCCAGGAACTGGAAGAGCCAGTAGCAACCATCCCTGTGCGAGGGTAGCAGAGGAGGA
AGTTCCGCTGCTTCCCCACGTGCGAGGTCAGTACTTGGAGCAAGTGTTGGCCAACTCTATTCTGG
CAACCAGTACTCACAGAGGAACACCAACACAAACTCGAGCAAGGCAAGGGTACGTGTAGATCCCC
GCCTGTGTAAAGGGTACGTGTAGATCCCCGCGTGTGTAACGCATTCCCATCCGGTAGGGTTGGCT
TTATCTAGCAAGGGCTTCCAGTGTGTGACGAGGTCGTGCAACCCGAAGCCAGTAGGCGGGAAGGA
CTAATTGCTATGTGCCTAGTATCGGAGGGTTTACGAGCTCCATACGGCGTGTTGTATTCGTGGAG
GTACCGTATAGCCAGGAACAATTAGGTAGGAAGGAGTTTTTCCATATGCCAGTTGACCAGGAACA
CCAAGCGGTTGGTGACCTCAGTGCGTGCTGGTTGTCTTCATAGAG



Found at i:601125 original size:29 final size:29

Alignment explanation


    Indices: 601083--601141  Score: 109
    Period size: 29  Copynumber: 2.0  Consensus size: 29

     601073 CGAGCAAGGC

                                         
     601083 AAGGGTACGTGTAGATCCCCGCCTGTGTA
          1 AAGGGTACGTGTAGATCCCCGCCTGTGTA

                                  *      
     601112 AAGGGTACGTGTAGATCCCCGCGTGTGTA
          1 AAGGGTACGTGTAGATCCCCGCCTGTGTA

             
     601141 A
          1 A

     601142 CGCATTCCCA


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.22, C:0.22, G:0.32, T:0.24


Consensus pattern (29 bp):   
AAGGGTACGTGTAGATCCCCGCCTGTGTA

Left flanking sequence: Indices 600583 -- 601082
GCTGCAGGTCAGTACCTCTTCTCTAGCTACAGGTCACTGTTGCCAGGTTATGCGTCTCTAGCTGC
AGGAACTAGCTTCATAGTATCCACCTTCCGACCAACCAAGAACAAAGGCTATAGCGATAACCCCC
TGTACCCCTCTTTAGACAAGGAAGACTGTAGGAACTATGAGATCGAGTAGGAACCATCCCTATGC
GAGGTAGCAACTAGGCTAGTATCCCTATGCGTCTATAGCTGCCCAGGAGAAGCGATAAACCAGTT
GCCCAGTAGCCCTATGCCAGTTGCCAAGTAGCCCTATGCGGATAGTTTCCCAGTAGCCCTATGCG
TCTATAGCTCCAGGAACTGGAAGAGCCAGTAGCAACCATCCCTGTGCGAGGGTAGCAGAGGAGGA
AGTTCCGCTGCTTCCCCACGTGCGAGGTCAGTACTTGGAGCAAGTGTTGGCCAACTCTATTCTGG
CAACCAGTACTCACAGAGGAACACCAACACAAACTCGAGCAAGGC


Right flanking sequence: Indices 601142 -- 601641
CGCATTCCCATCCGGTAGGGTTGGCTTTATCTAGCAAGGGCTTCCAGTGTGTGACGAGGTCGTGC
AACCCGAAGCCAGTAGGCGGGAAGGACTAATTGCTATGTGCCTAGTATCGGAGGGTTTACGAGCT
CCATACGGCGTGTTGTATTCGTGGAGGTACCGTATAGCCAGGAACAATTAGGTAGGAAGGAGTTT
TTCCATATGCCAGTTGACCAGGAACACCAAGCGGTTGGTGACCTCAGTGCGTGCTGGTTGTCTTC
ATAGAGGTGCTTCAACCACGATACAGGAGCTATGAACCCCTACCTCCCCTCGAAGGCGGAAGGTT
GGCGAGCTATAGTCGTGCTTCCAGTCTTGCTATGGGTGGTTCAACCACTCACCAGTACGATAAGC
TGGATACGATAAGCTGCAGGCCAGTACGCTGGATGAAGCTGGATACGATAAGCTGGATCCTACCT
AAGAGGAGGAACTGGTTGTCCAAGAGAGGGCTTGTGAGTACGTGT



Found at i:601541 original size:14 final size:14

Alignment explanation


    Indices: 601522--601589  Score: 54
    Period size: 14  Copynumber: 5.1  Consensus size: 14

     601512 CACTCACCAG

                          
     601522 TACGATAAGCTGGA
          1 TACGATAAGCTGGA

                        * 
     601536 TACGATAAGCTGCA
          1 TACGATAAGCTGGA

            ** *    *      
     601550 GGCCAGTACGCTGGA
          1 TACGA-TAAGCTGGA

                          
     601565 T--G--AAGCTGGA
          1 TACGATAAGCTGGA

                          
     601575 TACGATAAGCTGGA
          1 TACGATAAGCTGGA

             
     601589 T
          1 T

     601590 CCTACCTAAG


Statistics
Matches: 40,  Mismatches: 9, Indels: 10
        0.68            0.15        0.17

Matches are distributed among these distances:
  10    8  0.20
  12    1  0.03
  14   24  0.60
  15    7  0.17

ACGTcount: A:0.31, C:0.18, G:0.31, T:0.21


Consensus pattern (14 bp):   
TACGATAAGCTGGA

Left flanking sequence: Indices 601022 -- 601521
GCCAACTCTATTCTGGCAACCAGTACTCACAGAGGAACACCAACACAAACTCGAGCAAGGCAAGG
GTACGTGTAGATCCCCGCCTGTGTAAAGGGTACGTGTAGATCCCCGCGTGTGTAACGCATTCCCA
TCCGGTAGGGTTGGCTTTATCTAGCAAGGGCTTCCAGTGTGTGACGAGGTCGTGCAACCCGAAGC
CAGTAGGCGGGAAGGACTAATTGCTATGTGCCTAGTATCGGAGGGTTTACGAGCTCCATACGGCG
TGTTGTATTCGTGGAGGTACCGTATAGCCAGGAACAATTAGGTAGGAAGGAGTTTTTCCATATGC
CAGTTGACCAGGAACACCAAGCGGTTGGTGACCTCAGTGCGTGCTGGTTGTCTTCATAGAGGTGC
TTCAACCACGATACAGGAGCTATGAACCCCTACCTCCCCTCGAAGGCGGAAGGTTGGCGAGCTAT
AGTCGTGCTTCCAGTCTTGCTATGGGTGGTTCAACCACTCACCAG


Right flanking sequence: Indices 601590 -- 602089
CCTACCTAAGAGGAGGAACTGGTTGTCCAAGAGAGGGCTTGTGAGTACGTGTAGAGGTGATACAA
CCCCGGTCCAGTACGAGCAGGTAAGCACTAGTGAGATATGCTATATGGGTGGGAAAGGGGGAAGT
AGGGGAAGTCCCTTCAACCATAACTACCAGAATTCGTGTGCGAGGTAGCTACATCGTGTGCGAGG
TAGCAGCCACTAGCTACGTGGTTGCCAGGTAGCAGCCCCTCTCTAGCTACAGGTAGCTGATCAGT
ACGATACCTTCGCACACCTCCTCCAGAAGCCTCATAACTGCATGCCAATGCGATGGAGCTGCATC
CCTAGGCCAGGTAGCTACAGCCAGATCCCCAACCAATACGTGACGGATCCCCTACCTCTGAAGAC
AAGGAAGACCAACCCCAAAACCCCTCATCAGACAAGGTTGACTGGAGGAACTAGAAGAGCCAGTA
GCCATCCTACCGAGGCGAGGTAGCTACTTGTCCCTTCTGAACCGT



Found at i:601801 original size:30 final size:29

Alignment explanation


    Indices: 601765--601821  Score: 78
    Period size: 29  Copynumber: 1.9  Consensus size: 29

     601755 GTGTGCGAGG

                            *             
     601765 TAGCTACATCGTGTGCGAGGTAGCAGCCAC
          1 TAGCTACATCGT-TGCCAGGTAGCAGCCAC

                   * *                 
     601795 TAGCTACGTGGTTGCCAGGTAGCAGCC
          1 TAGCTACATCGTTGCCAGGTAGCAGCC

     601822 CCTCTCTAGC


Statistics
Matches: 24,  Mismatches: 3, Indels: 1
        0.86            0.11        0.04

Matches are distributed among these distances:
  29   14  0.58
  30   10  0.42

ACGTcount: A:0.21, C:0.26, G:0.32, T:0.21


Consensus pattern (29 bp):   
TAGCTACATCGTTGCCAGGTAGCAGCCAC

Left flanking sequence: Indices 601265 -- 601764
ACGAGCTCCATACGGCGTGTTGTATTCGTGGAGGTACCGTATAGCCAGGAACAATTAGGTAGGAA
GGAGTTTTTCCATATGCCAGTTGACCAGGAACACCAAGCGGTTGGTGACCTCAGTGCGTGCTGGT
TGTCTTCATAGAGGTGCTTCAACCACGATACAGGAGCTATGAACCCCTACCTCCCCTCGAAGGCG
GAAGGTTGGCGAGCTATAGTCGTGCTTCCAGTCTTGCTATGGGTGGTTCAACCACTCACCAGTAC
GATAAGCTGGATACGATAAGCTGCAGGCCAGTACGCTGGATGAAGCTGGATACGATAAGCTGGAT
CCTACCTAAGAGGAGGAACTGGTTGTCCAAGAGAGGGCTTGTGAGTACGTGTAGAGGTGATACAA
CCCCGGTCCAGTACGAGCAGGTAAGCACTAGTGAGATATGCTATATGGGTGGGAAAGGGGGAAGT
AGGGGAAGTCCCTTCAACCATAACTACCAGAATTCGTGTGCGAGG


Right flanking sequence: Indices 601822 -- 602321
CCTCTCTAGCTACAGGTAGCTGATCAGTACGATACCTTCGCACACCTCCTCCAGAAGCCTCATAA
CTGCATGCCAATGCGATGGAGCTGCATCCCTAGGCCAGGTAGCTACAGCCAGATCCCCAACCAAT
ACGTGACGGATCCCCTACCTCTGAAGACAAGGAAGACCAACCCCAAAACCCCTCATCAGACAAGG
TTGACTGGAGGAACTAGAAGAGCCAGTAGCCATCCTACCGAGGCGAGGTAGCTACTTGTCCCTTC
TGAACCGTAGTTCTGCCTTGTCCCTTCTGAACCGTAGTTCTGCAAGGGCGGGTAAAGGCAAGGTT
TCCCTATGCGAGCTATACGAGACGAGGAGGACTAAGGCGTTAGAGTCGGCGACACGAGATACTTG
TTAGAGAGGGCCCACAAACCCCCGTAAGACAGGGAGCTCGCTCTTCACCCTCCTAAGCTCCCCCA
CATAGCAGCGAGGCTAGGCGATACATGCGTCCTGCATGAACACGA



Found at i:602101 original size:27 final size:27

Alignment explanation


    Indices: 602071--602124  Score: 108
    Period size: 27  Copynumber: 2.0  Consensus size: 27

     602061 GAGGTAGCTA

                                       
     602071 CTTGTCCCTTCTGAACCGTAGTTCTGC
          1 CTTGTCCCTTCTGAACCGTAGTTCTGC

                                       
     602098 CTTGTCCCTTCTGAACCGTAGTTCTGC
          1 CTTGTCCCTTCTGAACCGTAGTTCTGC

     602125 AAGGGCGGGT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  27   27  1.00

ACGTcount: A:0.11, C:0.33, G:0.19, T:0.37


Consensus pattern (27 bp):   
CTTGTCCCTTCTGAACCGTAGTTCTGC

Left flanking sequence: Indices 601571 -- 602070
TGGATACGATAAGCTGGATCCTACCTAAGAGGAGGAACTGGTTGTCCAAGAGAGGGCTTGTGAGT
ACGTGTAGAGGTGATACAACCCCGGTCCAGTACGAGCAGGTAAGCACTAGTGAGATATGCTATAT
GGGTGGGAAAGGGGGAAGTAGGGGAAGTCCCTTCAACCATAACTACCAGAATTCGTGTGCGAGGT
AGCTACATCGTGTGCGAGGTAGCAGCCACTAGCTACGTGGTTGCCAGGTAGCAGCCCCTCTCTAG
CTACAGGTAGCTGATCAGTACGATACCTTCGCACACCTCCTCCAGAAGCCTCATAACTGCATGCC
AATGCGATGGAGCTGCATCCCTAGGCCAGGTAGCTACAGCCAGATCCCCAACCAATACGTGACGG
ATCCCCTACCTCTGAAGACAAGGAAGACCAACCCCAAAACCCCTCATCAGACAAGGTTGACTGGA
GGAACTAGAAGAGCCAGTAGCCATCCTACCGAGGCGAGGTAGCTA


Right flanking sequence: Indices 602125 -- 602624
AAGGGCGGGTAAAGGCAAGGTTTCCCTATGCGAGCTATACGAGACGAGGAGGACTAAGGCGTTAG
AGTCGGCGACACGAGATACTTGTTAGAGAGGGCCCACAAACCCCCGTAAGACAGGGAGCTCGCTC
TTCACCCTCCTAAGCTCCCCCACATAGCAGCGAGGCTAGGCGATACATGCGTCCTGCATGAACAC
GAATACTTGCTATCCGTCTCTAGCTGCAAGGCTACAGGCTCGGTGCTGCCACTTGCTATGCGTCT
CTAGCTGCGTGCCTGCCCAGCGTAATTCCCGGCTTATTCCAGGGCGGCAGTGGCTGGATTCGCTG
ATACTGAGTGGTGTAGGGGTTTCCAGTTCGGTAAGTGATCCAGGCTGGTGTCGCTTCGACCTTCT
GGTCTAGTGGTTCCAGTTCGGTGATGAGTTATCCGTGCGTGTGTGAGTAATCTGCCCGTGCATGT
CCTCCGTGCGTGTAGTCTTACTCCATCCGTGATCGTGCCGTGCGC



Found at i:603602 original size:40 final size:40

Alignment explanation


    Indices: 603547--603628  Score: 146
    Period size: 40  Copynumber: 2.0  Consensus size: 40

     603537 GTGTATAGGA

                             *                      
     603547 ATCGTGGATTCCCGGGCTGCGTAGCGGGACATCATCATTC
          1 ATCGTGGATTCCCGGGCCGCGTAGCGGGACATCATCATTC

                                    *               
     603587 ATCGTGGATTCCCGGGCCGCGTAGTGGGACATCATCATTC
          1 ATCGTGGATTCCCGGGCCGCGTAGCGGGACATCATCATTC

              
     603627 AT
          1 AT

     603629 ATTTGACTTT


Statistics
Matches: 40,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  40   40  1.00

ACGTcount: A:0.18, C:0.27, G:0.29, T:0.26


Consensus pattern (40 bp):   
ATCGTGGATTCCCGGGCCGCGTAGCGGGACATCATCATTC

Left flanking sequence: Indices 603047 -- 603546
GTAGTGACTATGTGGGCGGGTGACAGCCTCCCGGAGCGAGGACTGGCGCATGATGATGTGGGTGT
TCTAGTTGTCGTTCATGTTGGAAACTGATATAACCACCGCAACTACCACAACCAACAACGTCCGT
TCCAGTTTGAGAGCCTTGTAGGCGGCGAGCGTCGTCGTTACCCACGTGATCTTGATGGTCGTGGG
CTGGGATCGCCTTCCCCCTTCTTTCGCCTTCCCATGCATATGTTAGTAGTACGTACTTACTTGTT
CGAATTCAATTACTTGGCTTGGCATGTACGTACTTATAATATCTCAATCTCGGGGGCCCCACCGG
GGATGTAATGAGAAATCAATGCTAGGTCCTACCTAGGCACAATGAGCCCGCAGGGAATATGTGGG
GATCTAATATATCTATCTTGACCTCGAACATGGATACTCGCGTAGCGGGCACTCATGCACATGGG
TCAATGGCCCCGCATAATAAATGTTCTGTAAGCCCGTGTATAGGA


Right flanking sequence: Indices 603629 -- 604128
ATTTGACTTTTAAGTAAGCCCCCGGCACGATACATCCAATACCAACCAATATGGGAGGCCTGGTC
TAGTGCTTGATAATACCGGGCGAAGCCGAGTGGTGATAGGAAGTAGCTTGCAAAGCAAGCATTGT
AGTACATGTTGGGGATTGAACTCACCCACCTATATAACGTGAGTGTGCTTGTCGAAACCTGCACT
TAGATGGGGCATATTATGAATACCTACTCGCCACGTACCTTGTTTCATTTCCCCTGCACGCAGGC
GTTCCATTATCAACATCAGAACATATGGGATCAACACCGTATGTATATGTATATGTGTATGTGTA
TATGTTGATACTGTCACAACCTCGTTCCCCCTTTGTAAATGGCAGTAGTATCGTATGTTCCCCAA
CGGTTTGGACCGACATCAATGTGGTTTTCGGAAGGTGCTGGTGCGGTCGATGTCGATTGATGGGC
GTGGGGTCAGTCCAACCACCCCGTGCACTGTAGCTGCTTTGTAAA



Found at i:605646 original size:18 final size:18

Alignment explanation


    Indices: 605623--605660  Score: 60
    Period size: 18  Copynumber: 2.1  Consensus size: 18

     605613 GGTTGTATCG

                               
     605623 GGACTCGCTCC-TATGTCA
          1 GGACTCGCTCCGTA-GTCA

                              
     605641 GGACTCGCTCCGTAGTCA
          1 GGACTCGCTCCGTAGTCA

              
     605659 GG
          1 GG

     605661 GAATGGGTTT


Statistics
Matches: 19,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  18   17  0.89
  19    2  0.11

ACGTcount: A:0.16, C:0.32, G:0.29, T:0.24


Consensus pattern (18 bp):   
GGACTCGCTCCGTAGTCA

Left flanking sequence: Indices 605123 -- 605622
TTATACAACACGCGGAGTTTCTATCTGTTCATATAACGCCGGGGTATTGTATCGGGTCGGTGCAC
TACTGAAAATGAGAACTAGTCGCACAACTACAACCACGTCAATAACTGGGTTGTAACTGCCCATA
GTACTTCGGATACTTGCCATTTATAACAGTCCTGCTACATGGGCTTCAGTATGCGGGCACGTAAC
AACAAACCCAACACGCCTAATAACACAGGCCAATAGCGGTCCCACGACTTCACCCACGCCAGCAG
CTAGTTCCCCCACCCCAGACAGTCGCAGGGGATCGGTTGGCTCTGGCAGTTATGGGTAAAGTGAT
ATCGCCTCCGACAGGCGTATATTCCAGTTACGAACGAGCAAGTCCACGACAACCTTATACGGGTT
GAGATGAGTAATACCGGAACTAGAGAGTTACTGAAACCAACATACACTTCAGAACCATCCTAAGC
TCCCCCCGTAACTGTCTTTGTTCGCCGGCTGGGGTGGTTGTATCG


Right flanking sequence: Indices 605661 -- 606160
GAATGGGTTTATATGGTCATACGTACCAGTTATTGGTGGCGGGGGCAGATACGTGGCCTCGCTCT
GGATCCTGGGGTAGTTACATAGGTTGATAACCGCCATGTTGATTATAACACGTAACGTAACCCCG
CTACAAGCTCAGTACGCCCACTCAGGAACAGAGTACCGTGCAAACCATACCAGCGATGGTTCGTA
CAGCCATGCCAACTAACAGCCAGCCTATACCAACATGCCTCCCGCTTCCCCTGTTACCGGTCCCT
TCACGGAAGCCTACACCCCTCCCTCCACTATCAGGGCACCGACAAAACCCCCCACTCCGGCGGAC
GCGAACTTGTAGCGGGGTGTAGAGGGCTATGCGCAGTCCAAACATTCAGGTAGGCGGGAAGCATA
TACGCGAGTCCATTCCCTGACACGGTACTGAAGGGGGGCGGAACTAGTTGGTCACTCAACAACCA
GCGAGGCGAGGTGGTTAGGGGTTCGCGTGCACGGGTGACAACGAC



Found at i:612323 original size:6 final size:6

Alignment explanation


    Indices: 612312--612364  Score: 63
    Period size: 6  Copynumber: 8.8  Consensus size: 6

     612302 AAGCCATATA

                                                        *  *   *    
     612312 TAGTTG TAGTTG TAGTT- TACGTTG TAGTTG TAGTTG TTGTAG TTGTTG
          1 TAGTTG TAGTTG TAGTTG TA-GTTG TAGTTG TAGTTG TAGTTG TAGTTG

                 
     612360 TAGTT
          1 TAGTT

     612365 TACGTTTACG


Statistics
Matches: 41,  Mismatches: 4, Indels: 4
        0.84            0.08        0.08

Matches are distributed among these distances:
   5    2  0.05
   6   37  0.90
   7    2  0.05

ACGTcount: A:0.15, C:0.02, G:0.30, T:0.53


Consensus pattern (6 bp):   
TAGTTG

Left flanking sequence: Indices 611812 -- 612311
GCCACATTGGTATTTCGTATAGACGCCGATGGGCGCGCGCTAAGTTACTTGTGCCAGACCCCACC
TCTATCCGAGCGTAACTACCCACCCGTCTACGTATTCACCCCTCCTCAAGTTCAATCCAAGGTGT
TGTGCCAGGTGGAATGTGCCAGACATCTTGGTGTTTAGCGCAGCATGTGGCGTGTGATTGGTGGC
TATGGCAGGATGATTCCCTCACATGGCATACAACAATGTGTTACAATATCAGCGTGTACCCTGTA
CTATATAGAGAAAGGAGATATGGTTGTGGTACCTCAAGGAGCAAGCAACCGGATTGACGCGGGGC
TCCTCCGTCATGTGTCCTTCCCCTCCCCGGTGCGTATACTCGAGGGATGGTATGTATTTGTTTCA
TAGTAGCTGTGTACCGCGGACCAGATGTGCGATATGTGGCGAGCACAGCACAGCACAGCCCCACC
GACCCCTAGCCAGCCGCAGCGTCCCCGCCCGCCCTAAGCCATATA


Right flanking sequence: Indices 612365 -- 612864
TACGTTTACGTATACGTAGTAGTAGTAGAAAGCGGTTGTCTTGCTTCGCTTACATAGATGCTCTC
TGAGTGAACTACATTTCCATTGGGGAATACTGCTCAATCTCATACACTGGATGCTTGACGCTGCC
CCGATCGAAAGCTGCGGCGGGTGGGGAGTTTCAAGAAGACAACCGCGGAGCACGCATGGATCGAG
TTGGGGAGCTCACCAGAAATAATTCTTTCAAGTACTAACGCCCTAGAAATAACTACTATGTAGCG
AGGTATTCTCCGCCACGTATGTAGCCCGCTTGTGGAAGGCTACGTAGGGGAGGTAAGTCGGCATT
CACTACAATCTGGAGCTTTTAAATGACCTAGGCCTCGCCGACATAGCCGTACTACGGGTTACTAG
CCCAAGGTAGGTAGACGGAGCGCCCTACCACGGAGAAACAATGCAATGAATTAATCGTCTAATAG
CGCCGGGGAAGAAATGCCATGAATCGTTCTGCTTGTTTCTGGAAG



Found at i:612337 original size:18 final size:18

Alignment explanation


    Indices: 612314--612370  Score: 71
    Period size: 18  Copynumber: 3.2  Consensus size: 18

     612304 GCCATATATA

                              
     612314 GTTGTAGTTGTAGTTTAC
          1 GTTGTAGTTGTAGTTTAC

                              *
     612332 GTTGTAGTTGTAGTTGT-T
          1 GTTGTAGTTGTAGTT-TAC

              *  *            
     612350 GTAGTTGTTGTAGTTTAC
          1 GTTGTAGTTGTAGTTTAC

               
     612368 GTT
          1 GTT

     612371 TACGTATACG


Statistics
Matches: 32,  Mismatches: 5, Indels: 4
        0.78            0.12        0.10

Matches are distributed among these distances:
  17    1  0.03
  18   30  0.94
  19    1  0.03

ACGTcount: A:0.14, C:0.04, G:0.30, T:0.53


Consensus pattern (18 bp):   
GTTGTAGTTGTAGTTTAC

Left flanking sequence: Indices 611814 -- 612313
CACATTGGTATTTCGTATAGACGCCGATGGGCGCGCGCTAAGTTACTTGTGCCAGACCCCACCTC
TATCCGAGCGTAACTACCCACCCGTCTACGTATTCACCCCTCCTCAAGTTCAATCCAAGGTGTTG
TGCCAGGTGGAATGTGCCAGACATCTTGGTGTTTAGCGCAGCATGTGGCGTGTGATTGGTGGCTA
TGGCAGGATGATTCCCTCACATGGCATACAACAATGTGTTACAATATCAGCGTGTACCCTGTACT
ATATAGAGAAAGGAGATATGGTTGTGGTACCTCAAGGAGCAAGCAACCGGATTGACGCGGGGCTC
CTCCGTCATGTGTCCTTCCCCTCCCCGGTGCGTATACTCGAGGGATGGTATGTATTTGTTTCATA
GTAGCTGTGTACCGCGGACCAGATGTGCGATATGTGGCGAGCACAGCACAGCACAGCCCCACCGA
CCCCTAGCCAGCCGCAGCGTCCCCGCCCGCCCTAAGCCATATATA


Right flanking sequence: Indices 612371 -- 612870
TACGTATACGTAGTAGTAGTAGAAAGCGGTTGTCTTGCTTCGCTTACATAGATGCTCTCTGAGTG
AACTACATTTCCATTGGGGAATACTGCTCAATCTCATACACTGGATGCTTGACGCTGCCCCGATC
GAAAGCTGCGGCGGGTGGGGAGTTTCAAGAAGACAACCGCGGAGCACGCATGGATCGAGTTGGGG
AGCTCACCAGAAATAATTCTTTCAAGTACTAACGCCCTAGAAATAACTACTATGTAGCGAGGTAT
TCTCCGCCACGTATGTAGCCCGCTTGTGGAAGGCTACGTAGGGGAGGTAAGTCGGCATTCACTAC
AATCTGGAGCTTTTAAATGACCTAGGCCTCGCCGACATAGCCGTACTACGGGTTACTAGCCCAAG
GTAGGTAGACGGAGCGCCCTACCACGGAGAAACAATGCAATGAATTAATCGTCTAATAGCGCCGG
GGAAGAAATGCCATGAATCGTTCTGCTTGTTTCTGGAAGCTCGTA



Found at i:612352 original size:9 final size:9

Alignment explanation


    Indices: 612338--612364  Score: 54
    Period size: 9  Copynumber: 3.0  Consensus size: 9

     612328 TTACGTTGTA

                     
     612338 GTTGTAGTT
          1 GTTGTAGTT

                     
     612347 GTTGTAGTT
          1 GTTGTAGTT

                     
     612356 GTTGTAGTT
          1 GTTGTAGTT

     612365 TACGTTTACG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   18  1.00

ACGTcount: A:0.11, C:0.00, G:0.33, T:0.56


Consensus pattern (9 bp):   
GTTGTAGTT

Left flanking sequence: Indices 611838 -- 612337
CGATGGGCGCGCGCTAAGTTACTTGTGCCAGACCCCACCTCTATCCGAGCGTAACTACCCACCCG
TCTACGTATTCACCCCTCCTCAAGTTCAATCCAAGGTGTTGTGCCAGGTGGAATGTGCCAGACAT
CTTGGTGTTTAGCGCAGCATGTGGCGTGTGATTGGTGGCTATGGCAGGATGATTCCCTCACATGG
CATACAACAATGTGTTACAATATCAGCGTGTACCCTGTACTATATAGAGAAAGGAGATATGGTTG
TGGTACCTCAAGGAGCAAGCAACCGGATTGACGCGGGGCTCCTCCGTCATGTGTCCTTCCCCTCC
CCGGTGCGTATACTCGAGGGATGGTATGTATTTGTTTCATAGTAGCTGTGTACCGCGGACCAGAT
GTGCGATATGTGGCGAGCACAGCACAGCACAGCCCCACCGACCCCTAGCCAGCCGCAGCGTCCCC
GCCCGCCCTAAGCCATATATAGTTGTAGTTGTAGTTTACGTTGTA


Right flanking sequence: Indices 612365 -- 612864
TACGTTTACGTATACGTAGTAGTAGTAGAAAGCGGTTGTCTTGCTTCGCTTACATAGATGCTCTC
TGAGTGAACTACATTTCCATTGGGGAATACTGCTCAATCTCATACACTGGATGCTTGACGCTGCC
CCGATCGAAAGCTGCGGCGGGTGGGGAGTTTCAAGAAGACAACCGCGGAGCACGCATGGATCGAG
TTGGGGAGCTCACCAGAAATAATTCTTTCAAGTACTAACGCCCTAGAAATAACTACTATGTAGCG
AGGTATTCTCCGCCACGTATGTAGCCCGCTTGTGGAAGGCTACGTAGGGGAGGTAAGTCGGCATT
CACTACAATCTGGAGCTTTTAAATGACCTAGGCCTCGCCGACATAGCCGTACTACGGGTTACTAG
CCCAAGGTAGGTAGACGGAGCGCCCTACCACGGAGAAACAATGCAATGAATTAATCGTCTAATAG
CGCCGGGGAAGAAATGCCATGAATCGTTCTGCTTGTTTCTGGAAG



Found at i:612390 original size:36 final size:36

Alignment explanation


    Indices: 612320--612390  Score: 83
    Period size: 36  Copynumber: 2.0  Consensus size: 36

     612310 TATAGTTGTA

                                 *    *  *      
     612320 GTTGTAGTTTACGTTGTAGTTGTAGTTGTTGTAGTT
          1 GTTGTAGTTTACGTTGTAGTTATAGTAGTAGTAGTT

                                                 
     612356 GTTGTAGTTTACGTT-TACG-TATACGTAGTAGTAGT
          1 GTTGTAGTTTACGTTGTA-GTTATA-GTAGTAGTAGT

     612391 AGAAAGCGGT


Statistics
Matches: 30,  Mismatches: 3, Indels: 4
        0.81            0.08        0.11

Matches are distributed among these distances:
  35    5  0.17
  36   25  0.83

ACGTcount: A:0.18, C:0.06, G:0.28, T:0.48


Consensus pattern (36 bp):   
GTTGTAGTTTACGTTGTAGTTATAGTAGTAGTAGTT

Left flanking sequence: Indices 611820 -- 612319
GGTATTTCGTATAGACGCCGATGGGCGCGCGCTAAGTTACTTGTGCCAGACCCCACCTCTATCCG
AGCGTAACTACCCACCCGTCTACGTATTCACCCCTCCTCAAGTTCAATCCAAGGTGTTGTGCCAG
GTGGAATGTGCCAGACATCTTGGTGTTTAGCGCAGCATGTGGCGTGTGATTGGTGGCTATGGCAG
GATGATTCCCTCACATGGCATACAACAATGTGTTACAATATCAGCGTGTACCCTGTACTATATAG
AGAAAGGAGATATGGTTGTGGTACCTCAAGGAGCAAGCAACCGGATTGACGCGGGGCTCCTCCGT
CATGTGTCCTTCCCCTCCCCGGTGCGTATACTCGAGGGATGGTATGTATTTGTTTCATAGTAGCT
GTGTACCGCGGACCAGATGTGCGATATGTGGCGAGCACAGCACAGCACAGCCCCACCGACCCCTA
GCCAGCCGCAGCGTCCCCGCCCGCCCTAAGCCATATATAGTTGTA


Right flanking sequence: Indices 612391 -- 612890
AGAAAGCGGTTGTCTTGCTTCGCTTACATAGATGCTCTCTGAGTGAACTACATTTCCATTGGGGA
ATACTGCTCAATCTCATACACTGGATGCTTGACGCTGCCCCGATCGAAAGCTGCGGCGGGTGGGG
AGTTTCAAGAAGACAACCGCGGAGCACGCATGGATCGAGTTGGGGAGCTCACCAGAAATAATTCT
TTCAAGTACTAACGCCCTAGAAATAACTACTATGTAGCGAGGTATTCTCCGCCACGTATGTAGCC
CGCTTGTGGAAGGCTACGTAGGGGAGGTAAGTCGGCATTCACTACAATCTGGAGCTTTTAAATGA
CCTAGGCCTCGCCGACATAGCCGTACTACGGGTTACTAGCCCAAGGTAGGTAGACGGAGCGCCCT
ACCACGGAGAAACAATGCAATGAATTAATCGTCTAATAGCGCCGGGGAAGAAATGCCATGAATCG
TTCTGCTTGTTTCTGGAAGCTCGTAGTGCCCGCGCCACATAGTTC



Found at i:614999 original size:13 final size:13

Alignment explanation


    Indices: 614981--615005  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

     614971 CCTTCCTGCT

                         
     614981 ACAGTGGAGTTCG
          1 ACAGTGGAGTTCG

                        
     614994 ACAGTGGAGTTC
          1 ACAGTGGAGTTC

     615006 CTGCGCCGGT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24


Consensus pattern (13 bp):   
ACAGTGGAGTTCG

Left flanking sequence: Indices 614481 -- 614980
ATCTCAGCGTATTACCCATTCACTGCCTTCCCAAACCCATTTCCCAGACTACACCGGATCAACCA
GAGCCCACCTCAATAACTCTGTGGGGCTTTACTCGGAGTTTGTACAGTCTCCGTTAGTACAGTCG
GAAGAGCCGGTTCGTACGGGGGAATTACACCGCAAGATACCCTACCCCGAGACCTATAAGCCCAC
ATATTCCTGTGAGCGGCCCATGTAGCCCGTCGTCGTATTACTAGTTCGCAACTAGTGAAGGTATG
TGGTTGAACCACCCATAGCAAGATGAATTATGTGGTGTGGCTTACTGAAGGTGAGGTTACTGAAG
TTCCAGCGGTGAGGTGTAACATCTTTATCAAAGTACGTATCGAGGTGCCGGACAGTCGGTTCCGG
GTAAGGGCCAAACCAAACAACCGTACGGGGATTGCAGTGGGCTACATACCCCCGCCTGGCACGCA
TTATTGGCCGCTGGAGGTGTATAGTCGTATTTGTCCCTTCCTGCT


Right flanking sequence: Indices 615006 -- 615505
CTGCGCCGGTAAGGTGGCCTGGGTTAAGATACTGCAGCCGTGCACGGCGTCACCGCCAACTGCGG
CCGACCCAGCCGTACCAACCGTATGGTGTCATACCCCGGAGTTAGCGTTAAGTAACTACCCCTGC
CCAACAAGCACAACGAACTCAACTGGTCGGAAACATGGCTACAGGTTGATCACACCGGGTTATAT
AAGGTTCCGCTTCCGGTGTTAGTCGAGGTACCACAACCGGGCTATAGATACGCGGAGACAGCTAC
GGAGGGCAGTTATGTGGCGAGGCAGGTACCGGTATTGGAGGTCGTGGTTCTGGCTATGTGACGTA
AAGGACAGACGTAGACGTGGTTGGTTCGTTTACCAGGTGGTTGTATCATGGACAGGTGGTTGGAC
TGGTCCGCTTTTCGGCTTTAAGGACTGGGACTGGCCCCACATAGCCCGGTCGATCACACTCTGGA
TATGCTTTCAGTGTTGTAGCTCAGTCGCCGCACAGGCTCGCTGCA



Found at i:616631 original size:4 final size:4

Alignment explanation


    Indices: 616622--616649  Score: 56
    Period size: 4  Copynumber: 7.0  Consensus size: 4

     616612 CCACCGGCTG

                                              
     616622 CGTT CGTT CGTT CGTT CGTT CGTT CGTT
          1 CGTT CGTT CGTT CGTT CGTT CGTT CGTT

     616650 TCCCCACATA


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   4   24  1.00

ACGTcount: A:0.00, C:0.25, G:0.25, T:0.50


Consensus pattern (4 bp):   
CGTT

Left flanking sequence: Indices 616122 -- 616621
CTCCACTGTCAGTTAGAGCAGCGGATAACTATGTGGACCGGGGTTGATCCATGTGGCCGGTAGTT
ACGGTTTACTGAGTTCAGTGGTGGGCTGGCACATACGACGACAGGGGAAGCTCACTCTGGTTCGC
AGTAGCTCACACAGGCAGGAGGGGAAGGGCGATTACTTAACGAACCAGACATAGGAGCCTGCAGC
CAACAACCAGCAACTAGTAGCCCACACCTTCCTCAACAACCAGCGACTCAGGTTCGTATGCACCC
CAAAAGCCCCCCACCTCAATAACTGGCATCGAAGACAGGGCTCACTCGTTTCAGGATGGATGCAG
GGCTACAACGGGCTCACTGTAGTCGGCTGGGAACTAAGGGGATCGGTTCGCTGGCTACTAACGGC
AGGAGGGGCTCATCCAGTACGACGCCCGCACACCCAGTTACGGGGGAAGCATTAGAACAGTATCG
GTTCGGGGTCGTGGTTCTGGCGTTTACTCGCTAGCCCACCGGCTG


Right flanking sequence: Indices 616650 -- 617149
TCCCCACATAGCAACCCATAGACTCGAGTTATATGTGCACGCTGATATTTCCCCCTCCCTGAACT
TCAGTAGAAAGGGTTTCGTTTCAAGGTTTCGTTTCTATGTTGATGAGGTGGCGGTGAGGCGTTTC
CGTTTCTATGTGAGGTGATGAGGTGGCGGGGGGTTGTGTGTTGTTATTAGTACCTGAGGCGTTGT
ATCCTTCGAGAGGCCCCCAGAACGCGTTATATGGGGGGGGTTGGCTAGGGGTCGTCACGAGCATG
ACCGAAACGATATGCAATTCCTTGCTCCAAAGCGTGGCCCCACCATAACAGGTCGACGACACATC
TAGCAACGGTTAGTTCCCGCAGAGCAACCTGCGCGGTATATGGTTGGAGATATCAACTGTCCCTG
AACGTTGTGCTACTCGATCTACGTATCCGCACGTGCCGCAACCACCGTAAAGTGCCATGTAAAGA
AGGAGTACCAGAACAACAGGAAGTTCCAGCAGAGGGAGCCGGCAT



Found at i:617544 original size:19 final size:19

Alignment explanation


    Indices: 617520--617559  Score: 71
    Period size: 19  Copynumber: 2.1  Consensus size: 19

     617510 CACGCGAACG

                               
     617520 ACCGGGCTTCGGGGGTTAT
          1 ACCGGGCTTCGGGGGTTAT

                     *         
     617539 ACCGGGCTTTGGGGGTTAT
          1 ACCGGGCTTCGGGGGTTAT

              
     617558 AC
          1 AC

     617560 GAATCAACAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  19   20  1.00

ACGTcount: A:0.12, C:0.20, G:0.40, T:0.28


Consensus pattern (19 bp):   
ACCGGGCTTCGGGGGTTAT

Left flanking sequence: Indices 617020 -- 617519
GGAGATATCAACTGTCCCTGAACGTTGTGCTACTCGATCTACGTATCCGCACGTGCCGCAACCAC
CGTAAAGTGCCATGTAAAGAAGGAGTACCAGAACAACAGGAAGTTCCAGCAGAGGGAGCCGGCAT
AGGCTGGCGATGTGGGGGGAAACTGATTCTCTTCCCCGTATGTGCTATATACGGTACGGCCTCCG
CGTTATGTAAACCGTATAGGGAATCAGTATTCAAGGTTCATAGTCTGATTGAGATGAATATTGAA
TTACTGTAGCAAGTAATCATTTAATCAAGTACATATGCTTCATGGATGCGCGGTCCAATATACGC
TCACGTAACGGCAGGTGGCAATATGTACGCCCACTCAGGAACTTCCGCTACCGTGCAAGCCACAC
CAGACCCACATAGCAACTAGTTCCGCATCCCAACTAGTACGTTGTGGGGGGCAAGTCGAGTGAGT
TTTGCTTTCCCTGCCAGTTCCTGTCCCCTTCCCAACACGCGAACG


Right flanking sequence: Indices 617560 -- 618059
GAATCAACAACCCTGCATCCTGCCCCACAACAACCGTACTGCGAGCCGCCGACAAACACACCCGG
GTATGAGCTATCCTTCGTTATCAGGGTTTGCAAAGGAGAGAGTCAAGTCTACGGAGTCGGTGGTT
ACTAGTCTACGGAGCCTCTCGAAGTCAAGTCGGGGGAGTGTACTGGTGTTGATTCATGGCCCGGG
CGGGCAGAACTAGTTGTGTTAATTAGTTGTACCGGGGACAGGTTCTGTTAACCATGTACCCCTTT
CGCAGAGTTAGTATCCGGTTCGCAGAGCTCACTGATTTCAGGGGGGTGGTTGCATTCAAGTATCC
GATATACGCAATGGCTTCGTGGAGCGGATTTCCAGTTGATGTGTAATTACGGGAGGACGGACGCT
ACCCTCACTCCGTAGCGAAGGTTCCATTATCCATTGTTGTCCAGCACGTTCCGGGGGAAGCATAA
CGCAACTAATAAACAGCAGTCACAGGAGCCTACGCACCTTACTAA



Found at i:618813 original size:5 final size:5

Alignment explanation


    Indices: 618803--618828  Score: 52
    Period size: 5  Copynumber: 5.2  Consensus size: 5

     618793 TGGCTGTTCG

                                           
     618803 CTCAC CTCAC CTCAC CTCAC CTCAC C
          1 CTCAC CTCAC CTCAC CTCAC CTCAC C

     618829 GTTACGAAAT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   21  1.00

ACGTcount: A:0.19, C:0.62, G:0.00, T:0.19


Consensus pattern (5 bp):   
CTCAC

Left flanking sequence: Indices 618303 -- 618802
GCGGGGTCGAGGTGCTGGGGATGGATGGGTAATATCGCCGCCTGCCTGCCTGCATTACCCAATAG
CAGTAGCTTGCCCCGATACAACCACCCATGTACGTACACCCCTATACTGGGTAACAAGCCGCTAC
TAACGCAACTATGGAGCCACTAAGGCCGCCTGCCCAACACGCAACTTAACGGCGCCTTCCCTGTC
CGCATACTTGGGTTAGGTATAGTTGACCGCCCGCATACTCTGTTTCTGTGTGAGCAACTAGTTCA
GTATCAGGGGTTTGTCCTGCGTTTTCCAGGGGGTGTTGTAGCAGAGAAGTCTACGTATACTGTAA
ACCCAGCCAGCTCACTCACTCAGTTACGGGAACAGATAGTACCTGCCCGCATACAAACTCAGTTA
ATTTCGACTTGTATAAAGCTGCATTAATCTCGACCGGCCCTTGATACTATAGGTCCCACGACTTC
CCCCACCGGTCATAAGGGAGTGTGACGGACACGGCTGGCTGTTCG


Right flanking sequence: Indices 618829 -- 619328
GTTACGAAATTAGATATAAACGAAACCTCTCTAATTACGTAACCGGGAAACGAAACCCGTCCGCT
CATTCTGCTGCTGGTTCGGGGGCTGGCTGTTATGAAGGGGCGTATGTATCGGGGTGAGCGTTTAC
CAACAACCGTGTAGGGAGGGGGTTTGTCCTGCCCATACTGTAGTGCTCGGACCGCCCGCTACAAC
ACGCATTGCCCACTCGACTGGTTATCGTTGCTCGGTACGTCCACTCAGGAAGTTTCTATATCCCA
CACTGGCCCCACGAATCACTACGTTTCTGCCCTGCCGTCCAACACGCCGCAATATTCATTGACAC
TAGGAGAACGGGCCTTTACTCGTTGGGCACAGACCATGTCTCTCGGGATACCCCACCCCAATACC
GCACCGCACTAACCGCACTAACCCCACTAACCCCACCGTCAATAGTTGTTGTTGTTAAGCCCCAC
CGTCAACCCCCACCGTCGACGCGTTGCGTGACACTCTTTAATCGA



Found at i:619235 original size:9 final size:9

Alignment explanation


    Indices: 619221--619250  Score: 51
    Period size: 9  Copynumber: 3.3  Consensus size: 9

     619211 CCAATACCGC

                     
     619221 ACCGCACTA
          1 ACCGCACTA

                     
     619230 ACCGCACTA
          1 ACCGCACTA

               *     
     619239 ACCCCACTA
          1 ACCGCACTA

               
     619248 ACC
          1 ACC

     619251 CCACCGTCAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.33, C:0.50, G:0.07, T:0.10


Consensus pattern (9 bp):   
ACCGCACTA

Left flanking sequence: Indices 618721 -- 619220
CTCGACCGGCCCTTGATACTATAGGTCCCACGACTTCCCCCACCGGTCATAAGGGAGTGTGACGG
ACACGGCTGGCTGTTCGCTCACCTCACCTCACCTCACCTCACCGTTACGAAATTAGATATAAACG
AAACCTCTCTAATTACGTAACCGGGAAACGAAACCCGTCCGCTCATTCTGCTGCTGGTTCGGGGG
CTGGCTGTTATGAAGGGGCGTATGTATCGGGGTGAGCGTTTACCAACAACCGTGTAGGGAGGGGG
TTTGTCCTGCCCATACTGTAGTGCTCGGACCGCCCGCTACAACACGCATTGCCCACTCGACTGGT
TATCGTTGCTCGGTACGTCCACTCAGGAAGTTTCTATATCCCACACTGGCCCCACGAATCACTAC
GTTTCTGCCCTGCCGTCCAACACGCCGCAATATTCATTGACACTAGGAGAACGGGCCTTTACTCG
TTGGGCACAGACCATGTCTCTCGGGATACCCCACCCCAATACCGC


Right flanking sequence: Indices 619251 -- 619750
CCACCGTCAATAGTTGTTGTTGTTAAGCCCCACCGTCAACCCCCACCGTCGACGCGTTGCGTGAC
ACTCTTTAATCGAGAACAGAAAGGGGACCGGATGATTCACGTGTCACCGAAGAGCCCATCCGAGG
AGCGGATAGATCCGAGGAGCGGGTAGGTTATGTAGAACGTGATACTTAGTGAGACAGAAAAGGCA
TAACTGTCAATCCCACATGTTTCCAGTTGCACAACCACAAAAGCACAACGGCAGGTGGCACTGCA
AGCAGTTTCAGGTGGCATCAAGGTGTGCGAAGAACATCAGTGTTAGCAGGGGAAGGCTCTTACTA
ACACCTCAGCGCTGCGCGCCCAAGCACCGCATATCAAGAAGGAGCCCGAGGTCTTCATAAGAGAT
CCTCAAGCGCCAGAACGCGTGGGATGGACGTGCGAGACCAAGGGCACTATGACTATTACATAACT
GCGGGCTCGAGTTGACAATGATTACCAGTGTGAAACATCGTAGGT



Found at i:619251 original size:9 final size:9

Alignment explanation


    Indices: 619225--619254  Score: 51
    Period size: 9  Copynumber: 3.3  Consensus size: 9

     619215 TACCGCACCG

                    *
     619225 CACTAACCG
          1 CACTAACCC

                     
     619234 CACTAACCC
          1 CACTAACCC

                     
     619243 CACTAACCC
          1 CACTAACCC

               
     619252 CAC
          1 CAC

     619255 CGTCAATAGT


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.33, C:0.53, G:0.03, T:0.10


Consensus pattern (9 bp):   
CACTAACCC

Left flanking sequence: Indices 618725 -- 619224
ACCGGCCCTTGATACTATAGGTCCCACGACTTCCCCCACCGGTCATAAGGGAGTGTGACGGACAC
GGCTGGCTGTTCGCTCACCTCACCTCACCTCACCTCACCGTTACGAAATTAGATATAAACGAAAC
CTCTCTAATTACGTAACCGGGAAACGAAACCCGTCCGCTCATTCTGCTGCTGGTTCGGGGGCTGG
CTGTTATGAAGGGGCGTATGTATCGGGGTGAGCGTTTACCAACAACCGTGTAGGGAGGGGGTTTG
TCCTGCCCATACTGTAGTGCTCGGACCGCCCGCTACAACACGCATTGCCCACTCGACTGGTTATC
GTTGCTCGGTACGTCCACTCAGGAAGTTTCTATATCCCACACTGGCCCCACGAATCACTACGTTT
CTGCCCTGCCGTCCAACACGCCGCAATATTCATTGACACTAGGAGAACGGGCCTTTACTCGTTGG
GCACAGACCATGTCTCTCGGGATACCCCACCCCAATACCGCACCG


Right flanking sequence: Indices 619255 -- 619754
CGTCAATAGTTGTTGTTGTTAAGCCCCACCGTCAACCCCCACCGTCGACGCGTTGCGTGACACTC
TTTAATCGAGAACAGAAAGGGGACCGGATGATTCACGTGTCACCGAAGAGCCCATCCGAGGAGCG
GATAGATCCGAGGAGCGGGTAGGTTATGTAGAACGTGATACTTAGTGAGACAGAAAAGGCATAAC
TGTCAATCCCACATGTTTCCAGTTGCACAACCACAAAAGCACAACGGCAGGTGGCACTGCAAGCA
GTTTCAGGTGGCATCAAGGTGTGCGAAGAACATCAGTGTTAGCAGGGGAAGGCTCTTACTAACAC
CTCAGCGCTGCGCGCCCAAGCACCGCATATCAAGAAGGAGCCCGAGGTCTTCATAAGAGATCCTC
AAGCGCCAGAACGCGTGGGATGGACGTGCGAGACCAAGGGCACTATGACTATTACATAACTGCGG
GCTCGAGTTGACAATGATTACCAGTGTGAAACATCGTAGGTTAGT



Found at i:620945 original size:17 final size:17

Alignment explanation


    Indices: 620921--620971  Score: 75
    Period size: 17  Copynumber: 3.0  Consensus size: 17

     620911 TTCGGTTGAA

                           * 
     620921 CCGCCCACAGAGTCATG
          1 CCGCCCACAGAGTCAGG

             *      *        
     620938 CTGCCCACGGAGTCAGG
          1 CCGCCCACAGAGTCAGG

                             
     620955 CCGCCCACAGAGTCAGG
          1 CCGCCCACAGAGTCAGG

     620972 ACCGGAAGGT


Statistics
Matches: 29,  Mismatches: 5, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  17   29  1.00

ACGTcount: A:0.22, C:0.39, G:0.29, T:0.10


Consensus pattern (17 bp):   
CCGCCCACAGAGTCAGG

Left flanking sequence: Indices 620421 -- 620920
CGGAATTGCACAACGGGGAATCGAGACATCCCAACCAAGAAAGACTTCCGTCTACTCGGGTGCTT
AGGACCAGAGAGATGGTAGGCAGTGCCCAGATATCGACTATGTGAATTACCAACATTGACACTGA
GTGGTAAGTGCCAACTCGCAGAAATCAACATAGAAAATCAATAAGACACTTGCCGGGCCCAGCGG
AGAACAAACACCAGGAAACTCAACAAGGGATGAGTGTGAACCCTTTGGTCATTGATAACAATCCA
TTGGTGGGCACCTACACGCTAAGGTGTAACCGCACGCACTAACTGCATAGATATCAAATTCACTA
CCCAGAGATCGGGGTAGGCACCGGCTCACCTTGACAGTAATGCACACAACTCACCCTTCCTCTAC
CAATGCAATATACTGGAGTCCGCCGGTAGGTTCCTGTGATCACTCTAGATCCCTCTCGATAACAA
CGGATTTACTTACCAACCAACACGGGGATCAGACATTCGGTTGAA


Right flanking sequence: Indices 620972 -- 621471
ACCGGAAGGTAGGAACTGACAGAGAGAGACAGAACAACGCTGAGTCGGGGGGGTAAGCACGAAAC
CGTGTATAGCCCGCGCAAACAGTTGTGTATGTACCCGTCGAGTGCATACACCGCGTGGTGCATCC
GAACCTACACACGAATCTCACCGCCGCAACAACACTGAATGATTCAAGCTCGATAACGCTGGTTA
CTTGCCCAAATATCCCTGGCTACTCAGCGGGCACAAACCAAGATGGATGAAACAAGATGGAGAGT
AGAAGACGCAAGACGATAGCTACCACTCATATAGTCTCAGTAGGTCGGGGTGGGCCAGCCCGAAC
CACCAAGCCATGGGGTTGAAGCCCTCGGATCATAGCATTTGTCGTCCAGCTGATGATCCGTGGGC
GCACAGGATGGTTGGGGAGGTAAGATTATCGGCTCCAAGAGACCGTGGATTAGACGGGGTTATAT
AGAGAGGTGCGATGCGCTTCCGTCCCACAAGCGGGCGTTATAGCC



Found at i:626571 original size:40 final size:40

Alignment explanation


    Indices: 626517--626596  Score: 160
    Period size: 40  Copynumber: 2.0  Consensus size: 40

     626507 GAACAGGAAC

                                                    
     626517 CCCCTACTTCCCCCTTTCCCACCCTAGTATGCAGTCGATA
          1 CCCCTACTTCCCCCTTTCCCACCCTAGTATGCAGTCGATA

                                                    
     626557 CCCCTACTTCCCCCTTTCCCACCCTAGTATGCAGTCGATA
          1 CCCCTACTTCCCCCTTTCCCACCCTAGTATGCAGTCGATA

     626597 ACGCTACATG


Statistics
Matches: 40,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  40   40  1.00

ACGTcount: A:0.17, C:0.45, G:0.10, T:0.28


Consensus pattern (40 bp):   
CCCCTACTTCCCCCTTTCCCACCCTAGTATGCAGTCGATA

Left flanking sequence: Indices 626017 -- 626516
TACAGTAATCACTGCACTTTCCATTGTTACAGTGGTGTTACAGGGTCTGTAGCTTCCCCCTTTCC
TTATTGTATTGTGAGCGAGGCAGTTCCCTAGCCGTCCCTTCCCGTTCGTTATAGTAGTTACGGCG
GAACCCCCCACATAACTGCGACTGAGCTGGCGTGAGTCCCGATACCTACGTGAGCTTTCCCTGTA
ACTGGGCGGGCCATGGTAGTTCGACCCCTACACTGGCTGTGGCCTCGCTCTGGATCCTGTGTACG
TTACTGCAGTTGATGGCCTACCGCATCGCTCCTCACCGTCAATAACTGGTGGTTGGTGGTTGTGT
AAGTGTGGTGCGGGCTGCACCCTATGTAGTGGGATGCGGAGTCAGGATGCGCACCGACTGCACGT
GGGGTTGGGTTCACCGGTGTAACTATATCTACCAGTGGCTTCAGTAGCGGTTGGCGGCCACGGTC
AAATAACATCAAATAATGTGACGCTCGTAGTGGGGGAACAGGAAC


Right flanking sequence: Indices 626597 -- 627096
ACGCTACATGCCGGGGCTTATAGGATGCAGTCAGTAGACGTGGGGTATGCGGATAGGTAAGTAGC
TCCAGTATGCGCGGGCAGTCTGTCCAATTACCCTGCTGATGTAACGTTAACTGCGGGCACTCCTC
TAACAACACCTCCAGCAGTTTATATACCAAGTGAGTCTATGGGTTCGTATGTAGTTACAGGCAAA
ACCCATTCGTGTACGCTTTCCCCCTCCCTAGTAGTGGCTGCCCCCTGGTAGCGTTGTAACTCACC
TTTCCCAACACGCGTATATGGAAGACCTGCATGAACCGGCACCTCGAACTGACCGGGAAACCTGC
GTTATGTAGTATCTCACCCCTGCACTTAGTCACCGATAAAGAACATTAACACCCGCTACTGATCC
ACCTGGGCGTCGTAGCAAGGGCAGTTGGTTCACATCCTGTCTAGAGTGAGCAACTAGTGCACGTA
TTGGGATTCCTATACCCTGTCACAACCATATCAGCCGGAACACCG



Found at i:627641 original size:16 final size:15

Alignment explanation


    Indices: 627616--627646  Score: 53
    Period size: 16  Copynumber: 2.0  Consensus size: 15

     627606 CTCCTCTCCT

                           
     627616 CACCTCACCCCACCG
          1 CACCTCACCCCACCG

                            
     627631 CACCGTCACCCCACCG
          1 CACC-TCACCCCACCG

     627647 GGCCCGCCCG


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  15    4  0.27
  16   11  0.73

ACGTcount: A:0.19, C:0.65, G:0.10, T:0.06


Consensus pattern (15 bp):   
CACCTCACCCCACCG

Left flanking sequence: Indices 627116 -- 627615
TCAAGGTAGCCTATGTGAGCTAGTGTAGTGGAGTGAGTGTTACCGGGTTGAGGTATGTGGTACGT
CTACTGCCTTTCCCTGTGAGTAACTAGTTCCCCTACACCGCCAACCAGTTACGTCCGGGAAGCAA
CAGTTACGGTTACTGAATCCAGCTCAGTCGACGCATGGCTATACTGAGCTGGCAAACAACATTCC
GGGGGCACATACTCCGACGTACTGGGTCGCATACGTATCACTGCCCATGTAGCCAGGGAAAGTTG
GCCAACCTGCGTACATAGTGTTACCCCCGTTTACATATATCTCTGCCGGTTCCCGCACTCCTAAA
GCCATGGTACGCTCAGTACTTGGTTACATACCGCGCGTTCACATGGTGGGTGTGTAGCCGGCTAG
CCCCAACCACTCCATGACGTACTTGTTTCCCACACCTCCGTTGACTTGTATGCAACCCCTAACCG
AACCACACACAAACACGACCATATATAACTCGGCTCTCCTCTCCT


Right flanking sequence: Indices 627647 -- 628146
GGCCCGCCCGCCATATGTAGTTGTAGTTGTAGTTGTAGTTGTTGTCTACGTTGTTGTTGTAGTTG
TCGTTGTCGTCGTTGTTGTTGCCGTCGTCTGCCCGCTACGACGTACCAACATGGCTCGCTGCACA
AAGTACGTAAACCCTTCCTCCGCGTGTTGGTTCGGGCCCTTCCCCTCCTGCCTGTTAACGCGCAG
CGAACTGCCTGCATGTAACTACCCCTTACTCATCCGCTGATACATAGCCAACCACCCCTTCACTT
AGTAAGTATGAATATTTCTTTCTTGAATATTCCCGGAACAATCACATAATTGGACCTGTAGCCGG
GAGCCCTTGTGTGACGATCATGACTCGAGAATCGCTTGTCCGAGGAGCTGGGATGTGGATTTGGA
GCCCGGTCCTGGGAGCGGCGATTGTGGTACTGCCCGGATAATGGAACCCTGCAACGGAAGCCCAG
AGCGTCGGCTGGCCTGAATGAGCCTGAGCCTGAATGTTCCGCTAC



Found at i:627673 original size:6 final size:6

Alignment explanation


    Indices: 627662--627718  Score: 62
    Period size: 6  Copynumber: 9.5  Consensus size: 6

     627652 GCCCGCCATA

                                           *    *         *         
     627662 TGTAGT TGTAGT TGTAGT TGTAGT TGTTG- TCTACGT TGTTGT TGTAGT
          1 TGTAGT TGTAGT TGTAGT TGTAGT TGTAGT TGTA-GT TGTAGT TGTAGT

               *      
     627710 TGTCGT TGT
          1 TGTAGT TGT

     627719 CGTCGTTGTT


Statistics
Matches: 42,  Mismatches: 7, Indels: 4
        0.79            0.13        0.08

Matches are distributed among these distances:
   5    2  0.05
   6   38  0.90
   7    2  0.05

ACGTcount: A:0.11, C:0.05, G:0.32, T:0.53


Consensus pattern (6 bp):   
TGTAGT

Left flanking sequence: Indices 627162 -- 627661
GTTGAGGTATGTGGTACGTCTACTGCCTTTCCCTGTGAGTAACTAGTTCCCCTACACCGCCAACC
AGTTACGTCCGGGAAGCAACAGTTACGGTTACTGAATCCAGCTCAGTCGACGCATGGCTATACTG
AGCTGGCAAACAACATTCCGGGGGCACATACTCCGACGTACTGGGTCGCATACGTATCACTGCCC
ATGTAGCCAGGGAAAGTTGGCCAACCTGCGTACATAGTGTTACCCCCGTTTACATATATCTCTGC
CGGTTCCCGCACTCCTAAAGCCATGGTACGCTCAGTACTTGGTTACATACCGCGCGTTCACATGG
TGGGTGTGTAGCCGGCTAGCCCCAACCACTCCATGACGTACTTGTTTCCCACACCTCCGTTGACT
TGTATGCAACCCCTAACCGAACCACACACAAACACGACCATATATAACTCGGCTCTCCTCTCCTC
ACCTCACCCCACCGCACCGTCACCCCACCGGGCCCGCCCGCCATA


Right flanking sequence: Indices 627719 -- 628218
CGTCGTTGTTGTTGCCGTCGTCTGCCCGCTACGACGTACCAACATGGCTCGCTGCACAAAGTACG
TAAACCCTTCCTCCGCGTGTTGGTTCGGGCCCTTCCCCTCCTGCCTGTTAACGCGCAGCGAACTG
CCTGCATGTAACTACCCCTTACTCATCCGCTGATACATAGCCAACCACCCCTTCACTTAGTAAGT
ATGAATATTTCTTTCTTGAATATTCCCGGAACAATCACATAATTGGACCTGTAGCCGGGAGCCCT
TGTGTGACGATCATGACTCGAGAATCGCTTGTCCGAGGAGCTGGGATGTGGATTTGGAGCCCGGT
CCTGGGAGCGGCGATTGTGGTACTGCCCGGATAATGGAACCCTGCAACGGAAGCCCAGAGCGTCG
GCTGGCCTGAATGAGCCTGAGCCTGAATGTTCCGCTACCGCTGTACCCTGTGGGGTGGTACGGGC
ACCTGTGTTGGGATGCATATCGATCCGGGCCTTGTCTGTAGCCGT



Found at i:630120 original size:25 final size:25

Alignment explanation


    Indices: 630046--630120  Score: 61
    Period size: 24  Copynumber: 3.2  Consensus size: 25

     630036 AACTTGCGGT

                                 * * 
     630046 GTTGAGTACGATATCACGTACACAA
          1 GTTGAGTACGATATCACGTACGCTA

                       *     * *      
     630071 GTTGAG-ACGACA--ACTTGCAG-T-
          1 GTTGAGTACGATATCACGTAC-GCTA

                                     
     630092 GTTGAGTACGATATCACGTACGCTA
          1 GTTGAGTACGATATCACGTACGCTA

                
     630117 GTTG
          1 GTTG

     630121 TGGTAACTAC


Statistics
Matches: 36,  Mismatches: 8, Indels: 12
        0.64            0.14        0.21

Matches are distributed among these distances:
  21    6  0.17
  22    9  0.25
  23    1  0.03
  24   10  0.28
  25   10  0.28

ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27


Consensus pattern (25 bp):   
GTTGAGTACGATATCACGTACGCTA

Left flanking sequence: Indices 629546 -- 630045
CGGTAAACCTCCGGGTGTGGGGCCTGGCCAGTTCGAGGACTGGTGATACCTGTGTACTGAACCAG
GAGCACCGTATACTGACCGATCATGACTCGGAGTTGCGAGGAACTGGATGTGGCTGTCGTCCTCC
TCACGAGCCCTGTCCTCGAAGCGGAGTTGTACAGCGCGGATATGAAGGATCGAACCCAGTCCCGG
CAGCCCATGGGGTGTGGATGGCTACTGGTATGTAATCCTGAGCTACGGCTGCTGGAGCCTGGATA
CTGGGTTGACGGGCACCTATGTGGAATGGGTCGAGCCCGAGCCTATGTAGCCGATCCGGGAGTTT
GTGGACCGGGGTGGTAGAGCTCAGGATAGGTGTATCCAGGTCCGTGGGTTGAGGGAATTATGGAG
TGGATTGGCTGGTACAAGGAGCCACTGAGGATCGGTATGCATCTAGCTACTGGAGGGTGTTAATG
GAGGAGTGAGTCCCGGTGGGAGGGGTAACGTAGCCAACTTGCGGT


Right flanking sequence: Indices 630121 -- 630620
TGGTAACTACGATATAACTAGCTGAATACGGTTTCGGGGGACGTTAGTACCGTCACACACGTTGG
CTACCAGTGGAGGACACCACTTGTTGTAGATAGCACACCTCTCTATATAACCTAGGCACACGTCT
CATATGAAGACCAGACTACCGTTGTTATATAGCGGCGTGGAGCCTACGCGACAATGCGCGTTCCC
CCTCGTCTTCCTGGTATGGAACTTCCTGGTATAGAAGAGCGTGTCCCTCGTCTTCCGTGTTCCCA
GGGACGATCCCCTCGTCTTCGTAGCCCGTCCTCGTGTTCGTTCTACCACCTAGACCGGGCGAAGC
GAGTGTTCCTGGCTTCCGGTAGCTAGAGCCTGTGGTCCCTGGTCCGGTTGCTCCTGGTAGCTAGA
GCCTTTGGGCCGGGAGCTATAGACCGGTCCGGTTTTGTAGAGGTGTGATCCTGTACGTGTTCTGC
AGCTAGAAGCGATGTAGCTATGAAGCGAGTATGGCCGGTGCGTGG



Found at i:632717 original size:17 final size:17

Alignment explanation


    Indices: 632695--632738  Score: 88
    Period size: 17  Copynumber: 2.6  Consensus size: 17

     632685 TATATAGATG

                             
     632695 CTATGTGGCCAACTGAC
          1 CTATGTGGCCAACTGAC

                             
     632712 CTATGTGGCCAACTGAC
          1 CTATGTGGCCAACTGAC

                      
     632729 CTATGTGGCC
          1 CTATGTGGCC

     632739 TGACCGCCAA


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  17   27  1.00

ACGTcount: A:0.20, C:0.30, G:0.25, T:0.25


Consensus pattern (17 bp):   
CTATGTGGCCAACTGAC

Left flanking sequence: Indices 632195 -- 632694
CCCCCAGTGAGCGTACTGACGGTCGGTGCGCTGTTACCAGAACAAATCCAACATCTCCGGCTGGG
GCTATGTAGGGCAGGGGCATTCCTGAGAGCCAACTAGTACTGGTCGTTGTGCGCGTTGTGTTGGT
ATTGACCTCGGCACTACACGCAGTATCGGCCGGGCAGCAGTTATTTAAGTAGGTGAGGTACTCGT
CTTTGTCCCTGCCAACTACAGTAGGGGTGGTTGCATACAAGGTTACTCTGTATAGCTGTAACAAC
CCCGAACCTGTGGGGGGAATGGGTATACGCCTACGAATCAACAACCCCAGTGAGCGGATGTCAGA
GGCAGGCAGGCTACCCCCACCGCGTAACTGGGCGAGGAGATATAGCCGGTGTTCGCTCTATGTTG
TAACACCCACCCCAGTCGAAGTGGCAGGGCAGGGACAGACCGCACATGCGATAAATACGGTTTCT
ACGTACTCTACAGGTGAAGGGCACCGCCGCGTGGTTATATAGATG


Right flanking sequence: Indices 632739 -- 633238
TGACCGCCAACTGACCGGCTGGCAACACGTTATATATAACTGTGTGTAACCCAGGCTATTTCCCA
GGGCAACGGGTTCGGCTTCAGTATTCCGGTCGAGTGAGCCCACGTGGCCCGCCAGCGTACGACGA
CATCGAGTGAGACAAATATCTTGTTCTGGCTCCTATATGTCAAGGTTCTCCGTCTTGTATGGAAT
TAGCACATATAACAATACCCATGTGTTTCGAGAAATGTGTGTGGTCCGAAATACAAGATGTGGCT
ATATGGCGCAAGTGGCAATACCAACAAGCAGCTATATATAACAACGGTGTGCGAAGGCGCAAGAT
CTTCCTCCTCCGCGAATAGGTATCGGGCGAGTGGCCAGTCCCGTCGAGTGAGTTTCCATTGGCTA
GTCGAGTGAGCGTACGTGCGACGCCAGCGTGGAAGAGTGACATCGAGTGAGCGACCAGTATCAGG
ACCCGCGCACAGTAGCTGCCTTCTGCTAACCAGTTACGTGAGGGA



Found at i:645725 original size:21 final size:21

Alignment explanation


    Indices: 645699--645740  Score: 84
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     645689 CCCGAACCAA

                                 
     645699 TAACCAGGCTATGTAGTTGCG
          1 TAACCAGGCTATGTAGTTGCG

                                 
     645720 TAACCAGGCTATGTAGTTGCG
          1 TAACCAGGCTATGTAGTTGCG

     645741 GAAGGAAGTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29


Consensus pattern (21 bp):   
TAACCAGGCTATGTAGTTGCG

Left flanking sequence: Indices 645199 -- 645698
GGCTACTACTGGCTACTTCCCCTCCTGGCTAGCTAGTATATCGCGATCCGCCTGCCTGCCTGTAG
CCAACCAGTTACGTGAGATACATCAACCCTGGCCCCTGAACCTGTAGCCTGTTCCCGCTACATAG
TGTATACTGGTTGTGGTACCTCTAACAACCTGACAGTGTATATAGAGAGTAGCCAACCCATGTTA
CCTGTTATAGTGCCGGGAGTCGGTTCGCTGCCTGGCCACTGAGGTTGAGGGACTAACGCCAGCAA
CGTAGTGGGGAAACCTTCACGGGGTGCTACTTGTGTTGGTGTGTGTGTGTCTGGGTTGGATAAAC
GGAATGCGCGCTATGTATTGTACGGTATCTACTAGTGGCCGGGTAATAAACTATCTCTACTACAC
CCTCCCCTGCCCTGTTCGCGGAGGATGATTATGAAGTGTATTGAAGCTACAGGCGTGAGGGACAA
GTACGTAGTGGCATGAAACTACCCGCGTACGACTACCCGAACCAA


Right flanking sequence: Indices 645741 -- 646240
GAAGGAAGTTCAGGGGTATACTGGCCGGGGAAAGCGGATGAGCAAGGCAGGCAGGATGCAGGGTT
ACACACGAACGGCCATATGGCGGCAAGATGCCCCACCACATACCCCACTATAGCCACTATTAATA
AACAAAGTCTATGTATGCGGGTTCGGGTCAGTGATCTACACCGGCTACAGGAGGACAAATACCAC
ATCAACAAGCCGTTACTTAGTCACATGGTCATCGAAGTATGTTGATAAAGTCGTGGGTATTCACG
GGTAGCAACCTATACCTCCACATAGATGTATAAACCCAACACGCCACGGAGGAAGGCAGTGACGG
GGTTCGTATTAACGGCAGGCAGCGACGGTCAGGTGGGTGTGCTGCGTACAGTAGGCAGTCCGGCA
CACTTTGATTATTATGCCCGGTGAGCAACGTTCAGTATCAGGGCTTCGGTGCGAACAGTTCCATA
TGAATATTCGACATTCTACATAGGAGTAGTCTCGTTTTCTACCAG



Found at i:647757 original size:16 final size:16

Alignment explanation


    Indices: 647736--647767  Score: 64
    Period size: 16  Copynumber: 2.0  Consensus size: 16

     647726 AGCCAATAAC

                            
     647736 TGCCCGTAACTTGACT
          1 TGCCCGTAACTTGACT

                            
     647752 TGCCCGTAACTTGACT
          1 TGCCCGTAACTTGACT

     647768 GTGAGGTGTG


Statistics
Matches: 16,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.19, C:0.31, G:0.19, T:0.31


Consensus pattern (16 bp):   
TGCCCGTAACTTGACT

Left flanking sequence: Indices 647236 -- 647735
ATGTCCCGCTCGTCCCATATCGGTTCGCTGGCAGTTGGTTCACGCACACCAGTTGCTAGCTTACC
ATGATACCCCACCCAGATTTTGAGTTATACTCATATGCCACATCACAACAATTATCAATGCCGCT
ACATAGGAACTGGATCCAGATACTACGTGGGATCCTTACAACATAATAGACGTCACACTCCCCCT
TGACTGCCTGTAGCAACCATTGACCCGATATTACCCGGGCCGGTCGCTTACCTCTAGTTGGATGC
GGGGCCCAGAGAGGCGGCGGGCGGTGTGGTGTTATTTGTTCAAGGTGTAGGTATAACAATTATCA
ATACGCTGTTGGGGTGTGGGCGGGCTGGCGAGGAACTGTCCGCATACCCACAACACCCGGGATAC
ATATGGCCCACCTATAGACGAGCCTGAACCCGTGCACGGTATATAGAACCCTGGAAACCCCGGCA
CTTCGTAACAGGGGTGACTGTAGCTGCCCAGTACTAGCCAATAAC


Right flanking sequence: Indices 647768 -- 648267
GTGAGGTGTGGCCATGGCGCATTACGTCAAAGGTGGTTGGATCGCGCGCGTGCTTGCCTTCAGTA
TTCCAGTCTCAGTATACGCTTCCTCCCGCTAATAGATGTTGGGGAAAGTGGTACCGTCCAAACCC
CCTGTATGCATTGTGTGTCGCCCACCACCGTGCACAGTAGCTCCCCCTCAAGAACCACCGTCACA
ACATCTATCTTGTTATATACTCATATGGATAAACCCACCATGTGGTTTCACTGTCCGCATACGCC
AAAGGGAAGGGGAAAGCTCCATCGTGGCTACAAGTGTTTCCGGCAGGGCTCAATCGACTAGCCTG
TGTTTGTCGGCGGTGAGCAGTCGTTGTGTAGGGTATTGGCAGTTACGGTTTATTACTTGATGTCT
ACACCGTAGGCTCTTCTTTCCCGCATACTAGTGCTGGTTTGTGTTCCTCCAGCCTCTATAACTGA
ACCCACGCGGGCGTATGACCCTTCTAGTTAGGGGTGAACCCACGC



Found at i:648273 original size:37 final size:37

Alignment explanation


    Indices: 648220--648294  Score: 141
    Period size: 37  Copynumber: 2.0  Consensus size: 37

     648210 CCTCTATAAC

                       *                         
     648220 TGAACCCACGCGGGCGTATGACCCTTCTAGTTAGGGG
          1 TGAACCCACGCAGGCGTATGACCCTTCTAGTTAGGGG

                                                 
     648257 TGAACCCACGCAGGCGTATGACCCTTCTAGTTAGGGG
          1 TGAACCCACGCAGGCGTATGACCCTTCTAGTTAGGGG

             
     648294 T
          1 T

     648295 CTCCTCTAAC


Statistics
Matches: 37,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  37   37  1.00

ACGTcount: A:0.20, C:0.27, G:0.31, T:0.23


Consensus pattern (37 bp):   
TGAACCCACGCAGGCGTATGACCCTTCTAGTTAGGGG

Left flanking sequence: Indices 647720 -- 648219
AGTACTAGCCAATAACTGCCCGTAACTTGACTTGCCCGTAACTTGACTGTGAGGTGTGGCCATGG
CGCATTACGTCAAAGGTGGTTGGATCGCGCGCGTGCTTGCCTTCAGTATTCCAGTCTCAGTATAC
GCTTCCTCCCGCTAATAGATGTTGGGGAAAGTGGTACCGTCCAAACCCCCTGTATGCATTGTGTG
TCGCCCACCACCGTGCACAGTAGCTCCCCCTCAAGAACCACCGTCACAACATCTATCTTGTTATA
TACTCATATGGATAAACCCACCATGTGGTTTCACTGTCCGCATACGCCAAAGGGAAGGGGAAAGC
TCCATCGTGGCTACAAGTGTTTCCGGCAGGGCTCAATCGACTAGCCTGTGTTTGTCGGCGGTGAG
CAGTCGTTGTGTAGGGTATTGGCAGTTACGGTTTATTACTTGATGTCTACACCGTAGGCTCTTCT
TTCCCGCATACTAGTGCTGGTTTGTGTTCCTCCAGCCTCTATAAC


Right flanking sequence: Indices 648295 -- 648794
CTCCTCTAACTAGATAGGAGTGATTGTAAACCCTTGCATCTGTGTTCTACATAGAACTGCCCTCC
ACTTCAGAATGACCCTCCTTGTACCACAACCCGGGCTACTTCCACGGTAGCTGGGCCACATCGTT
GTACGGAGTCGCTCCCCCCGCCCGCTACGTGCACCAGTGGGGTATGGTCATCATGCTGGACATCA
CTGGCGTTAGGAAGTTACGCGAACCGCTCGACCCCTATGTGTTCGGCTGTTGGGGTTACGTGTAG
TGGCCGGTAAGCACAGTTGGTTGTACCCGTTAGTGGCGTTTAGAATCATAGAACCTGCAGTCTGC
AGCCAAGGTGCGGAACACGGTCTTCAGGTGTGGGGTTTTCTGTGTTCGTTGTTTTCCGACGTTAC
TCCCTTGCTCAGTAACTTGACCCGCTACAGGCTCCTAGTTGTGTGATATGCCGCACGTATGCACA
CCCACTGCACTGCAATATATACGCGCCGCGCGCGCACCCACTTCA



Found at i:652928 original size:21 final size:21

Alignment explanation


    Indices: 652902--652943  Score: 75
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     652892 CGCCTATGTT

                     *           
     652902 AGTTACGGAGCGTTGTTGTAC
          1 AGTTACGGAACGTTGTTGTAC

                                 
     652923 AGTTACGGAACGTTGTTGTAC
          1 AGTTACGGAACGTTGTTGTAC

     652944 CGCGCACAAA


Statistics
Matches: 20,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.21, C:0.14, G:0.31, T:0.33


Consensus pattern (21 bp):   
AGTTACGGAACGTTGTTGTAC

Left flanking sequence: Indices 652402 -- 652901
AGTGTTTCTCTGTCGAGCGACAGACTTGTCCCGTGCAATGAGGGAAGTGCCGGGCATATGAAGCA
CCAGCCGCCAACCCAGTTATTGACGGTGGGGGGACGTCAACGGTCTGGTACGTGCTTCCTTCCGT
CGTTAAATACGGACGTCTGCGTCTACTAGCCGGGGGGCCAGCTAGCTACCGAAACTGGTCTTCAC
TTACTTGTTCGCATAACGCAGTTCGAGCTACATTGCATATACCCAGGTAATAGCAACCCGTTCGT
TACGTTATTGGAGCCTTGGCCCACTCGGTCACCCACAGGAGGCGATCTACGTATCTTACCCTGCG
CAATGGTAGCGATGGTTGTGAGTTGCCCTGAAAGCAGGGAGCCAACTGCGTACGTTATGAAGTAG
GGCGGGTAGAACGCCACCGTATGGAACGTATTTCCCTTAGTTGCGTGGTGTAGATACGCGTAACT
CTCGTTGTTGTACCGCGCACTGGAGGGATGCCGCCCGCCTATGTT


Right flanking sequence: Indices 652944 -- 653443
CGCGCACAAACTCCGGGCTTGTGTCTCACCCAACCACCCACGCACATACGGCCGAGAATGCAGAG
AGCCATTTCCACTCAACCCGTTACGTAACGCCAAAGCCGTGCTAGCCCATCGGGACAAAGAGAGA
CAGAAAGATACGGTCTAGTAGTCGTATAACATGACGACGTGGTGTTTGGACTAGATACGGTCCTT
CTAGTACTTTCTCTTCGGGAGTGGGTGGCCGGGCTTAGGCCAATTCCCATCTTACGCCTGGCAAA
CCGACCTTCGTTTCACTCCATCACAAAGCGGAGAACCAGGAGGAAAGACCTCATGTCTAGTTTCT
AGTAGCCCGAGGTTGTTCACATACCGCACAGTACCGCTTCTGTATTCGGGGGTATTGGGGGAGCG
TATGTACGGAAGCGGTTGGTATACCTGTAGGAGGAAGTAGGCGGGGCGTGATGTTACTCGTGGGC
GGGGCGTGATGTCATAACGGAGCTTTGGAGTTACTAGACTGGACG



Found at i:654229 original size:19 final size:19

Alignment explanation


    Indices: 654205--654244  Score: 80
    Period size: 19  Copynumber: 2.1  Consensus size: 19

     654195 GCCCGTTCAA

                               
     654205 ATGGTGTAACTGGCGTTGC
          1 ATGGTGTAACTGGCGTTGC

                               
     654224 ATGGTGTAACTGGCGTTGC
          1 ATGGTGTAACTGGCGTTGC

              
     654243 AT
          1 AT

     654245 ACAGTAACCG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.17, C:0.15, G:0.35, T:0.33


Consensus pattern (19 bp):   
ATGGTGTAACTGGCGTTGC

Left flanking sequence: Indices 653705 -- 654204
CCATTTGAATAACGGAACCGACTTACCCTCTCGGTTACCCTCTCTATATGTAACCGAGAGGGTAA
CCGGGCCCCCGCCCGAAGGGATCCAACTCAGAACCGTTGAGCCGGGAACTGGTTGCGAAGCCGTA
CCTGTATTGGACGTACCGTACACAACCTTTGTTGGTTCTGAGTGCGAGTGAACGATGTGCCATAG
CATCCGCTGCATCACCCGTTCGGGAAACACCGCACCACCCGCGTACGTCGGTAACAAATCTCAAC
CACAAGATCAACTTCTACCGGCGTACCTTACGTCAATGGCGGTACGTAATCAGTACTTCATCATA
CACAACCGTACTCACTCACGCATTACGAGTACCCAATAACCCGCATAACCTTTCACTAGACGAAA
ACAGGCCCTTGGCGATGCGGCGATGCATGCATGGTTCCAACAACTATCAGCATATAACACAACAC
ACTCACTATCAGAACACACGAGCACGTCCTACGCTGCCCGTTCAA


Right flanking sequence: Indices 654245 -- 654744
ACAGTAACCGTAAGTGCTTCAAGTAGATGTTCCACACGGGCCCACATATTCCACACGGGCTGCGT
CAATATGTAGGGTAGGTAGCTTACGCATCTCAACAAGCACGGTTATATAGAGAGGGTGGGCGCGT
ACGCTACCGCTTCTCCCTCGGTGGCTCGCGTAGCTCGTTTTCGTAACTCATGTAGTTTGTTTTCG
TTACGTAAGTGGCCTCGTTACACCTCGTTCCATTGTCAACGATTACTCATGCCTGTCTTCTGCTG
CCTGCTATCCTATCCGGTCATAGCGGCACGCACCGTCAATAACGTTGGCCTTCCGCCTCGCACCT
CTCTATATAACCCCCCAGAGGAGTTGTTTGTCTTATGATCCGCCCACCTGCCAACACAAGCAAGC
CATAACACCGTACTTGGGGTTGGGCATTCTGCCTCGCCCATCAAGTGCGCGATTCGCCATACCAT
GTTGAGTTTAACCCATCCATGAGACTCGCATAGCGTTGAAGGATG



Found at i:654251 original size:19 final size:19

Alignment explanation


    Indices: 654210--654252  Score: 59
    Period size: 19  Copynumber: 2.3  Consensus size: 19

     654200 TTCAAATGGT

                            ***
     654210 GTAACTGGCGTTGCATGGT
          1 GTAACTGGCGTTGCATACA

                               
     654229 GTAACTGGCGTTGCATACA
          1 GTAACTGGCGTTGCATACA

                 
     654248 GTAAC
          1 GTAAC

     654253 CGTAAGTGCT


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  19   21  1.00

ACGTcount: A:0.23, C:0.19, G:0.30, T:0.28


Consensus pattern (19 bp):   
GTAACTGGCGTTGCATACA

Left flanking sequence: Indices 653710 -- 654209
TGAATAACGGAACCGACTTACCCTCTCGGTTACCCTCTCTATATGTAACCGAGAGGGTAACCGGG
CCCCCGCCCGAAGGGATCCAACTCAGAACCGTTGAGCCGGGAACTGGTTGCGAAGCCGTACCTGT
ATTGGACGTACCGTACACAACCTTTGTTGGTTCTGAGTGCGAGTGAACGATGTGCCATAGCATCC
GCTGCATCACCCGTTCGGGAAACACCGCACCACCCGCGTACGTCGGTAACAAATCTCAACCACAA
GATCAACTTCTACCGGCGTACCTTACGTCAATGGCGGTACGTAATCAGTACTTCATCATACACAA
CCGTACTCACTCACGCATTACGAGTACCCAATAACCCGCATAACCTTTCACTAGACGAAAACAGG
CCCTTGGCGATGCGGCGATGCATGCATGGTTCCAACAACTATCAGCATATAACACAACACACTCA
CTATCAGAACACACGAGCACGTCCTACGCTGCCCGTTCAAATGGT


Right flanking sequence: Indices 654253 -- 654752
CGTAAGTGCTTCAAGTAGATGTTCCACACGGGCCCACATATTCCACACGGGCTGCGTCAATATGT
AGGGTAGGTAGCTTACGCATCTCAACAAGCACGGTTATATAGAGAGGGTGGGCGCGTACGCTACC
GCTTCTCCCTCGGTGGCTCGCGTAGCTCGTTTTCGTAACTCATGTAGTTTGTTTTCGTTACGTAA
GTGGCCTCGTTACACCTCGTTCCATTGTCAACGATTACTCATGCCTGTCTTCTGCTGCCTGCTAT
CCTATCCGGTCATAGCGGCACGCACCGTCAATAACGTTGGCCTTCCGCCTCGCACCTCTCTATAT
AACCCCCCAGAGGAGTTGTTTGTCTTATGATCCGCCCACCTGCCAACACAAGCAAGCCATAACAC
CGTACTTGGGGTTGGGCATTCTGCCTCGCCCATCAAGTGCGCGATTCGCCATACCATGTTGAGTT
TAACCCATCCATGAGACTCGCATAGCGTTGAAGGATGGGAAAGTC



Found at i:656528 original size:23 final size:23

Alignment explanation


    Indices: 656498--656544  Score: 94
    Period size: 23  Copynumber: 2.0  Consensus size: 23

     656488 TTACCTTACC

                                   
     656498 CGCAACAGGGTATATGATATGGG
          1 CGCAACAGGGTATATGATATGGG

                                   
     656521 CGCAACAGGGTATATGATATGGG
          1 CGCAACAGGGTATATGATATGGG

             
     656544 C
          1 C

     656545 TTACTTATAT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   24  1.00

ACGTcount: A:0.30, C:0.15, G:0.34, T:0.21


Consensus pattern (23 bp):   
CGCAACAGGGTATATGATATGGG

Left flanking sequence: Indices 655998 -- 656497
AACCACTCTAGAGGCCCTCGTTGTTACACGTGGAAAGGGGGGGTTATACCGATCGAAGTGGCCAT
TTCGTTTACAATGAAAAATGAGTGAATTGCTTCTTAGATAGCACGGTGGGGGTTGACGGCCAAGG
CACGTAACGGTGATCTTGTGTGTGACAACCTTCAGCGTCCGCTCGCAGATGTGCATGCCCCTATG
TGGGTTTGCCAATCCCTCCATCCGCAAGCAGGTCGCAAGAGGGCAGCGCTCAGTGAAACGTTGTT
AATTGATGTGAGCCCAACAATAGGGAGAGAGCCAATGCTCTCGCTCACCAATTCTGTAGGACTTG
ATCGCCCCCGTTCGTGTTGTCAGGCTGCGTCCTAGGCTCTGGGTCTCAGTCTAGATCAGAGAGTC
TAGCGTGTCTCTGTGAGTTGTGGACCGGGGCTGTAACTGGCGAATCCGGAATCTACTCGCTGCCG
AACCTATCCCGCTTAAGCAGTGCAGTGAATGGGCCTTACCTTACC


Right flanking sequence: Indices 656545 -- 657044
TTACTTATATATAGTCGTCGTGTCGCGACGCCGACGCGCGAGCGCACGTGCTACCCGGTGCGCAT
GGTTGTTGTAACCGATCCTTACCCGATCATGGTATGTTACCTCGCCGGTTGGTGCGGGATGGGTT
ATTGAAAGGCGTTCCTCTGTGCATCCGATATCACGAACCCCTTCCCTCCCTTTCTGACAACACAA
TAGTTTTCCCAAGCGCAACAGTGAGTTCACAACCAAGGGGGTTGTGCCGGGTGGGTGGTATTGGT
TGTGAAGTTACCACAACCGCATATCATATTATGTAGGGTGTCGGGTGCGGGGGTGGATGGTGCGC
GAATGGATGGTTGGTGGTTTCGGTGGTTTCGTTATATATGTATGTGGGCACAACCTACCGAAACC
ACCCCAAACCCCACCTACGGGCGTGACGGGGAAAGAGCGGGATCAAGCCCCACCCCAACCAGCTC
TTAATCCCACCTTCTTCACGCCCCCCCATATACGCGGCATCAGCG



Found at i:665154 original size:21 final size:21

Alignment explanation


    Indices: 665125--665165  Score: 64
    Period size: 21  Copynumber: 2.0  Consensus size: 21

     665115 TTGGCACGCC

                      *          
     665125 CACCACCACCTCACCTCACCT
          1 CACCACCACCGCACCTCACCT

                *               
     665146 CACCGCCACCGCACCTCACC
          1 CACCACCACCGCACCTCACC

     665166 GCCACCTCAT


Statistics
Matches: 18,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   18  1.00

ACGTcount: A:0.22, C:0.63, G:0.05, T:0.10


Consensus pattern (21 bp):   
CACCACCACCGCACCTCACCT

Left flanking sequence: Indices 664625 -- 665124
GTAACCCCACATATTGGAGTTAGGGCCAACACTGATACGTTATATGATTCAACCACGTATCTGGA
CCCACCTTGCTACCATATACGAGTTCCCACACCGTGCCACATAGACACCCCGCACAGGCTACGAT
CGACAGGCTCATAAGGCTACGATCGACTGGCTCCGACTTGTAGCGTAGAGTGAGCCTCCTCACGG
CACGTCTCCACCTGGTAGCACTATGGACTCCTTTCCTCGTAACTGCCTAGCGCCACGTGAGCAAC
AGGATAGGTCAGCCAGCCGGTCAGGCCACATAGGTCAGTTGTTCCTACGTTGTATTGGATGCAAG
CGGGACTTGCCACGTATCAGCCAATCCGGTGCCGTTCGGTGCGAGCCTCTATAGCGACGTTAATT
GACCTTACACTGCCTGCCACTAGTAGCCTAAGGGCCACAGTCCAATTCTGAATATCTGCTAATGC
GTGCCCCTGCATATTGTGTCCTAGTTCCCCTTCCATTGGCACGCC


Right flanking sequence: Indices 665166 -- 665665
GCCACCTCATCAACATAGAAACGAAACCTTGTCGAAACCTTGAAACGAAACCAATTACATGATGA
GCTATCCCTCACCGTCAATAACTTGAGGTGAGGTTAGTTGGCTCTGTATTAACTAGACTTGATAC
GCTGGCCGGGGGGTGCATACTGATATATAGCATACTGATATATAGCAGTGTCGTTGGTTTCACGC
GTTGACCGGTTCACTTCATACAAGAACGGCTGGTGTGTGAACATAGAGCAGTAACATAGAGGAAC
ATAGAGCAGTTGTTCGTATGTGGAGACGGTGTTCGTCGTGCTTGCTTGTTGTTGTTATATAGTTG
TTGTTGTTGTTGTTTTCCAGCGAGAGGCTAGATGTTCGCGTGTTGTATCGGGCCTGTAGTTGCTC
ACGCGTTAAAGCTCAGTAGTGGTTGGGAGGCGGTTCGCTCGTGGAAGTTACGCGTATTAATGTGG
GATGCGGGGCTACATAGACGCCCACCCAGTTTCCAAGAAGTGGAA



Found at i:665155 original size:16 final size:16

Alignment explanation


    Indices: 665136--665174  Score: 69
    Period size: 16  Copynumber: 2.4  Consensus size: 16

     665126 ACCACCACCT

                            
     665136 CACCTCACCTCACCGC
          1 CACCTCACCTCACCGC

                *           
     665152 CACCGCACCTCACCGC
          1 CACCTCACCTCACCGC

                   
     665168 CACCTCA
          1 CACCTCA

     665175 TCAACATAGA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  16   21  1.00

ACGTcount: A:0.21, C:0.62, G:0.08, T:0.10


Consensus pattern (16 bp):   
CACCTCACCTCACCGC

Left flanking sequence: Indices 664636 -- 665135
TATTGGAGTTAGGGCCAACACTGATACGTTATATGATTCAACCACGTATCTGGACCCACCTTGCT
ACCATATACGAGTTCCCACACCGTGCCACATAGACACCCCGCACAGGCTACGATCGACAGGCTCA
TAAGGCTACGATCGACTGGCTCCGACTTGTAGCGTAGAGTGAGCCTCCTCACGGCACGTCTCCAC
CTGGTAGCACTATGGACTCCTTTCCTCGTAACTGCCTAGCGCCACGTGAGCAACAGGATAGGTCA
GCCAGCCGGTCAGGCCACATAGGTCAGTTGTTCCTACGTTGTATTGGATGCAAGCGGGACTTGCC
ACGTATCAGCCAATCCGGTGCCGTTCGGTGCGAGCCTCTATAGCGACGTTAATTGACCTTACACT
GCCTGCCACTAGTAGCCTAAGGGCCACAGTCCAATTCTGAATATCTGCTAATGCGTGCCCCTGCA
TATTGTGTCCTAGTTCCCCTTCCATTGGCACGCCCACCACCACCT


Right flanking sequence: Indices 665175 -- 665674
TCAACATAGAAACGAAACCTTGTCGAAACCTTGAAACGAAACCAATTACATGATGAGCTATCCCT
CACCGTCAATAACTTGAGGTGAGGTTAGTTGGCTCTGTATTAACTAGACTTGATACGCTGGCCGG
GGGGTGCATACTGATATATAGCATACTGATATATAGCAGTGTCGTTGGTTTCACGCGTTGACCGG
TTCACTTCATACAAGAACGGCTGGTGTGTGAACATAGAGCAGTAACATAGAGGAACATAGAGCAG
TTGTTCGTATGTGGAGACGGTGTTCGTCGTGCTTGCTTGTTGTTGTTATATAGTTGTTGTTGTTG
TTGTTTTCCAGCGAGAGGCTAGATGTTCGCGTGTTGTATCGGGCCTGTAGTTGCTCACGCGTTAA
AGCTCAGTAGTGGTTGGGAGGCGGTTCGCTCGTGGAAGTTACGCGTATTAATGTGGGATGCGGGG
CTACATAGACGCCCACCCAGTTTCCAAGAAGTGGAAGCAGAGGAA



Found at i:665330 original size:15 final size:15

Alignment explanation


    Indices: 665310--665342  Score: 66
    Period size: 15  Copynumber: 2.2  Consensus size: 15

     665300 GCCGGGGGGT

                           
     665310 GCATACTGATATATA
          1 GCATACTGATATATA

                           
     665325 GCATACTGATATATA
          1 GCATACTGATATATA

               
     665340 GCA
          1 GCA

     665343 GTGTCGTTGG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.39, C:0.15, G:0.15, T:0.30


Consensus pattern (15 bp):   
GCATACTGATATATA

Left flanking sequence: Indices 664810 -- 665309
CTCCTCACGGCACGTCTCCACCTGGTAGCACTATGGACTCCTTTCCTCGTAACTGCCTAGCGCCA
CGTGAGCAACAGGATAGGTCAGCCAGCCGGTCAGGCCACATAGGTCAGTTGTTCCTACGTTGTAT
TGGATGCAAGCGGGACTTGCCACGTATCAGCCAATCCGGTGCCGTTCGGTGCGAGCCTCTATAGC
GACGTTAATTGACCTTACACTGCCTGCCACTAGTAGCCTAAGGGCCACAGTCCAATTCTGAATAT
CTGCTAATGCGTGCCCCTGCATATTGTGTCCTAGTTCCCCTTCCATTGGCACGCCCACCACCACC
TCACCTCACCTCACCGCCACCGCACCTCACCGCCACCTCATCAACATAGAAACGAAACCTTGTCG
AAACCTTGAAACGAAACCAATTACATGATGAGCTATCCCTCACCGTCAATAACTTGAGGTGAGGT
TAGTTGGCTCTGTATTAACTAGACTTGATACGCTGGCCGGGGGGT


Right flanking sequence: Indices 665343 -- 665842
GTGTCGTTGGTTTCACGCGTTGACCGGTTCACTTCATACAAGAACGGCTGGTGTGTGAACATAGA
GCAGTAACATAGAGGAACATAGAGCAGTTGTTCGTATGTGGAGACGGTGTTCGTCGTGCTTGCTT
GTTGTTGTTATATAGTTGTTGTTGTTGTTGTTTTCCAGCGAGAGGCTAGATGTTCGCGTGTTGTA
TCGGGCCTGTAGTTGCTCACGCGTTAAAGCTCAGTAGTGGTTGGGAGGCGGTTCGCTCGTGGAAG
TTACGCGTATTAATGTGGGATGCGGGGCTACATAGACGCCCACCCAGTTTCCAAGAAGTGGAAGC
AGAGGAAGGGGCAGCGTATAACCCCATATCCGGAAGGCAGCTACTGCGCGCGGGGCTATAGAGGT
CGCGGAAGGCAGTCAAGGGTCAGTTATTGCAGTTCGAGGGGCACGCGGATGGGCTCACTCAACTG
GAAATATATATCTCGCGCTACTAACGCAGGAACGAAGTAGCCTAC



Found at i:665418 original size:13 final size:13

Alignment explanation


    Indices: 665400--665435  Score: 51
    Period size: 10  Copynumber: 3.0  Consensus size: 13

     665390 CTGGTGTGTG

                         
     665400 AACATAGAGCAGT
          1 AACATAGAGCAGT

                         
     665413 AACATAGAG--G-
          1 AACATAGAGCAGT

                         
     665423 AACATAGAGCAGT
          1 AACATAGAGCAGT

     665436 TGTTCGTATG


Statistics
Matches: 20,  Mismatches: 0, Indels: 6
        0.77            0.00        0.23

Matches are distributed among these distances:
  10    9  0.45
  11    1  0.05
  12    1  0.05
  13    9  0.45

ACGTcount: A:0.47, C:0.14, G:0.25, T:0.14


Consensus pattern (13 bp):   
AACATAGAGCAGT

Left flanking sequence: Indices 664900 -- 665399
GCCGGTCAGGCCACATAGGTCAGTTGTTCCTACGTTGTATTGGATGCAAGCGGGACTTGCCACGT
ATCAGCCAATCCGGTGCCGTTCGGTGCGAGCCTCTATAGCGACGTTAATTGACCTTACACTGCCT
GCCACTAGTAGCCTAAGGGCCACAGTCCAATTCTGAATATCTGCTAATGCGTGCCCCTGCATATT
GTGTCCTAGTTCCCCTTCCATTGGCACGCCCACCACCACCTCACCTCACCTCACCGCCACCGCAC
CTCACCGCCACCTCATCAACATAGAAACGAAACCTTGTCGAAACCTTGAAACGAAACCAATTACA
TGATGAGCTATCCCTCACCGTCAATAACTTGAGGTGAGGTTAGTTGGCTCTGTATTAACTAGACT
TGATACGCTGGCCGGGGGGTGCATACTGATATATAGCATACTGATATATAGCAGTGTCGTTGGTT
TCACGCGTTGACCGGTTCACTTCATACAAGAACGGCTGGTGTGTG


Right flanking sequence: Indices 665436 -- 665935
TGTTCGTATGTGGAGACGGTGTTCGTCGTGCTTGCTTGTTGTTGTTATATAGTTGTTGTTGTTGT
TGTTTTCCAGCGAGAGGCTAGATGTTCGCGTGTTGTATCGGGCCTGTAGTTGCTCACGCGTTAAA
GCTCAGTAGTGGTTGGGAGGCGGTTCGCTCGTGGAAGTTACGCGTATTAATGTGGGATGCGGGGC
TACATAGACGCCCACCCAGTTTCCAAGAAGTGGAAGCAGAGGAAGGGGCAGCGTATAACCCCATA
TCCGGAAGGCAGCTACTGCGCGCGGGGCTATAGAGGTCGCGGAAGGCAGTCAAGGGTCAGTTATT
GCAGTTCGAGGGGCACGCGGATGGGCTCACTCAACTGGAAATATATATCTCGCGCTACTAACGCA
GGAACGAAGTAGCCTACCGTTACGTTATTGAGGTGGGGCAGGGTCGGTGTACTTAGTTCTAGTTG
CGAACACAGAAACATGACTATATGGCTATACTAGTATGCGGACAG



Found at i:672804 original size:26 final size:27

Alignment explanation


    Indices: 672775--672831  Score: 80
    Period size: 27  Copynumber: 2.1  Consensus size: 27

     672765 ATTGTGCACT

                         **            
     672775 ACCCCG-ATACGTCCCATGAATCAACA
          1 ACCCCGCATACGTAACATGAATCAACA

                     *                 
     672801 ACCCCGCATCCGTAACATGAATCAACA
          1 ACCCCGCATACGTAACATGAATCAACA

                
     672828 ACCC
          1 ACCC

     672832 TGGGGCCTCT


Statistics
Matches: 27,  Mismatches: 3, Indels: 1
        0.87            0.10        0.03

Matches are distributed among these distances:
  26    6  0.22
  27   21  0.78

ACGTcount: A:0.35, C:0.40, G:0.11, T:0.14


Consensus pattern (27 bp):   
ACCCCGCATACGTAACATGAATCAACA

Left flanking sequence: Indices 672275 -- 672774
AGCCCCGGCTACATGGATAACAATGTGTATGTGCCCCTGCAGATCGTTCTAGTTCCCCGAACCCA
GTAACCCTCACCGGCTGGCTACATAACGAACGACCGACGGCCTCCGCTTCGGTAATTTCCTTCTC
CTTCATATGCGAGGTGAGGCTATGGTCCTTCCCCTTCCCTCGTGTAACAACACGTACCAGGGGCG
TTCAGTAGCGGGTAAAGCTGCAGAGGAAGGCATCAACAACCCCGCTACAGAGCTGGCACCAACCA
CCCATCCCATGTAGCCAGGCGTGCACGGGCAGTTCAGGGGCCGAGCCCACCGTCAATAACTGGGT
TCGCTCACCCACTCGCACATACAGGGGTCCTATAGCCGCTCACAGGGACCAACTGCCCGCATACG
GTGTTACTGAATGTCTAGTCTGCTCGCTCCGGAACGCTATGTGGGCCGCCAGCGTTTGACGTGAC
ATCATTTGTACATAACTGCCCGCATACTTGTAACGATTGTGCACT


Right flanking sequence: Indices 672832 -- 673331
TGGGGCCTCTACACCCCGTTCACCTAGCACAGCCCACCTCTGGGAGCCCACCACGGTAGTTAGTA
TCGGGGAAGGACCAGCGTCACTACGTATATACACTACACCCCAGCCAGCGCCCCAGCCTCCATAA
TAGTACGTGCTAGTACGTGCACCGACCCGGTAACGGCATTCCAGTCCAGTGCACCGGCCCAGCTG
CTATTAGTATCCTTTGTTCCTCGCCGTAGCTGCCTGTAGCGTACACATAACCAACTGCCCCGCTA
CATAGGGCCGGTGGGGTGTTTCTGTGTTCGCGTGTTGGCCAACTGCCCGATACAACGCGAACAGT
ATCAGGGCGAGTTGTTATATATGGCTGGCTCACTCTACGGAGTCTACGGAGTCGAAGTCTACTCC
GTATACGCAGCCTATCGAAGTCAAGTCTACGGAGTCGGTGCCACATAGGAGGGAAGGTCGACGCC
GGTTGGCCTGTTTGTGGTACCCAAACCAAGACGGAGCCTCCCGTA




Done.