123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_029130
Parameters: 2 7 7 80 10 50 500
Length:  978846

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 512 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3836--3867	5	6.4	5	100	0	64	18	40	21	18	1.91
3891--3919	6	5.0	6	95	4	51	34	17	48	0	1.47
4076--4207	66	2.0	67	87	3	194	17	26	34	21	1.95
6973--7012	5	8.0	5	100	0	80	20	60	0	20	1.37
9713--9749	18	2.1	18	100	0	74	32	10	45	10	1.74
9865--9977	48	2.4	48	100	0	226	27	26	26	19	1.99
12534--12575	15	2.8	15	88	0	66	11	50	19	19	1.78
15732--15762	5	6.2	5	100	0	62	41	38	0	19	1.51
19693--19776	44	1.9	44	100	0	168	17	36	20	25	1.94
21185--21211	14	1.9	14	100	0	54	22	37	33	7	1.82
27660--27685	13	2.0	13	100	0	52	38	15	15	30	1.88
28816--28878	33	1.9	33	96	0	117	7	22	44	25	1.79
29161--29233	36	2.0	36	97	0	137	16	31	26	26	1.96
30219--30295	38	2.0	38	97	0	145	31	23	28	16	1.96
30286--30351	33	2.0	33	100	0	132	21	30	33	15	1.94
34185--34224	21	1.9	21	100	0	80	20	20	25	35	1.96
34600--34662	31	2.0	31	96	0	117	25	15	30	28	1.96
35367--35408	14	3.0	14	89	0	66	7	59	14	19	1.57
36957--36995	6	6.2	6	88	11	60	30	15	0	53	1.42
36963--36989	14	1.9	14	100	0	54	29	14	0	55	1.40
36957--36996	20	2.0	20	100	0	80	30	15	0	55	1.41
39242--39361	59	2.0	60	96	3	224	16	18	40	25	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42476--42551	38	2.0	38	97	0	143	19	26	27	26	1.99
46283--46348	33	2.0	33	93	0	114	34	16	22	25	1.95
47800--47829	15	2.0	15	100	0	60	6	6	60	26	1.47
51258--51332	37	2.0	37	100	0	150	33	37	13	16	1.87
52811--52894	44	1.9	44	100	0	168	23	27	25	23	2.00
60968--61003	17	2.1	17	100	0	72	30	47	11	11	1.74
61610--61678	34	2.0	34	100	0	138	23	31	14	30	1.94
67176--67229	5	10.8	5	89	0	54	0	11	64	24	1.25
67176--67229	15	3.6	15	84	0	63	0	11	64	24	1.25
67488--67586	48	2.0	49	94	5	173	24	32	23	20	1.98
68164--68222	31	1.9	31	96	0	109	11	30	33	23	1.91
68419--68502	42	2.0	42	97	2	161	19	14	40	26	1.89
68881--68978	49	2.0	49	95	0	178	28	20	32	18	1.96
68960--69033	37	2.0	37	100	0	148	21	32	16	29	1.95
71407--71443	18	2.0	18	89	5	56	21	8	45	24	1.78
83148--83213	22	3.0	22	93	6	109	22	36	33	7	1.83
83622--83698	40	1.9	40	97	0	145	23	20	31	24	1.98
84010--84078	33	2.2	32	92	5	113	11	24	34	28	1.91
86143--86242	48	2.0	49	88	11	150	25	42	17	16	1.88
87039--87063	3	8.3	3	100	0	50	32	0	36	32	1.58
88561--88586	5	5.2	5	100	0	52	19	19	19	42	1.90
91696--91721	13	2.0	13	100	0	52	23	23	38	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94540--94564	5	5.0	5	100	0	50	20	20	40	20	1.92
100061--100106	23	2.0	23	95	0	83	17	32	13	36	1.88
109256--109299	18	2.4	19	96	3	81	20	36	15	27	1.93
109356--109418	31	2.0	32	90	3	101	20	30	26	22	1.98
111061--111085	9	2.8	9	100	0	50	44	0	0	56	0.99
111560--111628	12	5.8	12	84	6	86	52	26	11	10	1.69
111573--111641	24	2.8	24	78	10	86	52	27	8	11	1.67
111910--111977	34	2.0	34	97	0	127	27	14	29	27	1.95
113404--113502	51	2.0	48	90	5	153	14	28	21	36	1.92
114606--114655	25	2.0	25	96	0	91	10	20	42	28	1.84
115892--116001	55	2.0	55	100	0	220	14	29	21	34	1.93
118779--118842	32	2.0	32	100	0	128	15	9	34	40	1.80
119175--119301	66	2.0	61	89	7	191	23	33	24	18	1.97
120013--120044	15	2.1	15	100	0	64	21	25	37	15	1.93
120582--120663	23	3.6	23	98	0	155	14	24	42	18	1.87
120755--120787	11	3.0	11	100	0	66	18	54	0	27	1.44
122461--122504	23	1.9	23	100	0	88	18	20	27	34	1.96
122558--122612	28	2.1	26	86	10	76	20	56	3	20	1.57
124938--124985	24	2.0	24	95	0	87	10	43	20	25	1.83
125080--125111	16	2.0	16	100	0	64	37	43	6	12	1.68
126772--126796	13	1.9	13	100	0	50	16	16	44	24	1.86
128550--128613	21	3.1	21	97	2	121	10	32	37	18	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130187--130225	10	3.9	10	100	0	78	17	0	30	51	1.46
131226--131311	43	2.0	43	97	0	163	15	13	47	23	1.81
136211--136248	18	2.1	18	95	0	67	26	28	18	26	1.98
140449--140514	33	2.0	33	96	0	123	39	25	18	16	1.91
145971--145996	5	5.2	5	100	0	52	38	0	0	61	0.96
152482--152531	26	1.9	26	91	0	82	22	44	18	16	1.87
152502--152590	45	2.0	45	89	10	139	17	42	21	17	1.89
154763--154794	14	2.3	14	100	0	64	37	40	9	12	1.75
155024--155099	38	2.0	38	97	0	143	17	28	25	28	1.97
156137--156234	26	3.9	26	92	8	175	28	12	38	20	1.89
156137--156234	49	1.9	50	93	6	171	28	12	38	20	1.89
156244--156288	5	9.0	5	100	0	90	0	20	60	20	1.37
156742--156773	16	2.0	16	100	0	64	43	25	18	12	1.85
158026--158113	44	2.0	44	100	0	176	29	18	29	22	1.97
160071--160122	26	2.0	26	100	0	104	15	23	38	23	1.92
160835--160864	15	2.0	15	100	0	60	26	40	13	20	1.89
161817--161872	12	4.8	12	78	10	55	19	3	28	48	1.66
163227--163270	22	2.0	22	100	0	88	27	31	22	18	1.97
163452--163481	15	2.0	15	93	0	51	23	40	16	20	1.91
164458--164484	5	5.4	5	100	0	54	18	0	59	22	1.38
166209--166266	29	2.0	29	100	0	116	27	17	37	17	1.92
167683--167739	19	3.0	19	94	0	105	21	35	15	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167761--167842	41	2.0	41	100	0	164	9	31	24	34	1.88
171753--171807	6	9.3	6	98	2	103	16	65	0	18	1.27
171841--171908	26	2.6	26	100	0	136	22	42	8	26	1.82
173113--173241	66	2.0	66	98	0	249	31	28	15	24	1.96
175548--175576	15	1.9	15	100	0	58	27	13	27	31	1.94
179217--179244	14	2.0	14	100	0	56	14	28	28	28	1.95
179255--179301	23	2.0	23	100	0	94	12	53	12	21	1.72
179578--179682	54	1.9	54	96	0	192	5	29	34	30	1.81
180907--180944	19	2.0	19	100	0	76	10	15	36	36	1.82
182811--182852	21	2.0	21	100	0	84	38	28	28	4	1.77
185586--185648	20	3.0	21	90	9	101	9	34	20	34	1.85
185857--185886	15	2.0	15	100	0	60	20	26	26	26	1.99
188560--188598	19	2.1	19	100	0	78	30	23	25	20	1.98
190601--190660	30	2.0	30	93	0	102	11	51	11	25	1.72
192476--192532	30	1.9	30	100	0	114	28	19	40	12	1.87
193200--193276	38	2.0	38	97	0	145	16	42	12	27	1.85
193572--193647	36	2.1	37	92	2	127	18	38	18	25	1.93
193704--193730	13	2.1	13	100	0	54	22	55	7	14	1.64
194244--194297	27	2.0	27	92	0	90	25	33	12	27	1.93
195365--195399	18	1.9	18	88	0	52	45	31	8	14	1.75
197467--197598	26	4.9	26	74	9	120	19	37	22	20	1.95
197465--197598	57	2.5	52	86	6	169	19	37	23	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
198037--198126	45	2.0	45	100	0	180	28	22	20	28	1.98
198466--198491	13	2.0	13	100	0	52	38	38	7	15	1.76
199918--199958	21	2.0	21	100	0	82	9	19	39	31	1.84
200254--200315	29	2.1	29	100	0	124	19	30	33	16	1.94
202681--202757	38	2.0	38	100	0	154	27	33	10	28	1.90
203732--203815	40	2.1	40	100	0	168	17	40	22	19	1.91
203837--203881	16	2.8	16	89	0	72	22	62	6	8	1.48
205585--205630	23	2.0	23	100	0	92	30	17	30	21	1.96
208801--208836	18	2.0	18	100	0	72	33	33	22	11	1.89
211186--211280	49	2.0	47	91	6	156	25	32	13	28	1.94

Tables:   1   2   3   4   5