Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_012119
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 773279
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:2759 original size:12 final size:13
Alignment explanation
Indices: 2742--2774 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
2732 CGGTTTCGGG
2742 TGCTTATGA-AGT
1 TGCTTATGACAGT
2754 TGCTTAT-ACAGT
1 TGCTTATGACAGT
2766 TGCTTATGA
1 TGCTTATGA
2775 GGGTCCTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 1 0.05
12 17 0.89
13 1 0.05
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.42
Consensus pattern (13 bp):
TGCTTATGACAGT
Left flanking sequence: Indices 2242 -- 2741
GTAGGTCAAAAAATCTATTTTTTTTCTCTTTAGTTCAGTTCTCAACACATAAGAGAGAGAAAAAA
TAAATAAAGTATCCACAACAACATTCTGTAAAAAGCATTTTTCCAAACTTTCTTTTGGTAGACAA
AGAACTGCCAACCCACCCTCTATCTCCCTAGCTAGTAGTATCCTGCTGCCCACTAGACCCCGAAA
GTGAATAGCCAGCATACATAGAGAGACGGTCACATCACAAAGGTCACAGAAAATGTCTGTTATTC
AACATAATAATAATACTAGAAGTTGAAATCATATTCCTTCTCTTCCGGCATAAATACATTCCCAT
CTGCTGGATCTCAACATACTTCCTCGTTGTAATTTCAATCGTTTGGGCTTACTTACCGAAGGGCA
GGAAGGAAAAACTGACCGACCATAGAGAAGGAAGGCAGAAAGGATATTTACCAACACTACTGAAA
CAGCACGGACTCGGCTTGGGAGTTCGGGTTAGGGACGGTTTCGGG
Right flanking sequence: Indices 2775 -- 3274
GGGTCCTGATCGATACCCATACCCATGCCCAGCATCAGAACCTGCGACTTGCCCCGGCATCCCTT
ACAACTAGAGATAGAGATACAGATTAAGACCTTCGTGTTCGAGATCCATATCCATACGTAGGAGC
AGAATAAGTATCTCGTTCTGTTATATTCTGTCGATTAAGCAGTTCGATACCCATCAGCAGCAAAG
GCCTCGACGTACAATCGGCGCATGAGATCCAACATGCATGTATTACTGTCTTAAGCTTAAGCCAA
TCAGTCCTGGTAGGCGCACATCCGTTGCTTGTTCATTCCGGGTATGCGCAATCAGTACGAATCTT
TGCTTTAAAAGTAGTACTAGCATTAGCAGGAGCAGGAGGAGTAGCACTAGGAGTTTCCTCATATC
AGATGTCCATAATCGGATAAAGATGTTATCCAAGTTATGAAAAAGGAAGTCGATAGAGATTCATC
CCCAGCTCTGCTCTTATTGCTAGCTCTTTTCCTTTTTGCCTGGCA
Found at i:10715 original size:2 final size:2
Alignment explanation
Indices: 10708--10737 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
10698 TCTGTGTTTT
*
10708 TA TA TA TA TA TA TA TA AA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10738 AATTGGATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 10208 -- 10707
GCTTAGGGCTCTCTTTCTAATACGTCAAGTAAGAATGACTGGGTGCACCGATCTCTTACCTGCTT
CCCCACCCTTCCTTCATGCTAGTTTTTTCGAGTCAAATACGAATTGAGATAGGATACTTCAGTGG
CAAGGGAAAGGCTAATCCGAGTGATGGCCTTGCTAACATACATAGCAAACAAAGCAAGGATTCCA
GCTAAGAAACCAACAATGAAAGCTTTAAATCGGCCCATATAGTCCGTTGGATCTTATACTGAGAG
GAAAGGTGAAGGTATATGGAGCCTTCGACAGGTGTATCCCCGACTCCGGATTTCTCCCCTATAAC
TAGGTTCTATTTTCATGTCTTAAGCAAAAGTCAACAAAAGTCTTATCGCTTGGAGAAAGAGATAG
AAAGCTAGAACAAGTCCAGTATTCGAATTCCTCTCTCCCTAAGCTTAGCTATTTCATCAGCTTTG
AATGCTAGCTCCGCTGCAAGAGTCAGTAGTTCTGGTCTGTGTTTT
Right flanking sequence: Indices 10738 -- 11237
AATTGGATTTAAAAGCAGGTGTCGCAGAAGGCGGCAAAGGACTTAGTCGGGGAAGGAGTAGTTCG
GTGGGGGCGGGAAGAGAAGGGCGTAATATTTTAATAGAAAAGAAGAGCTGGGTCGAGGGAGCTGA
TCTAGTAAAGGGAGGGTAGGTTCTTTATTATAAGTGCCACACACCAGGACCAGGCTTTCTCACTT
GGACAAGAGGAGATGTGGCATTGCTAATCCGATCTTGTACCCAGGGTTTGATACAAATAAAACCA
GCCCAATCGAGATGAATTGAATGCTTTGCTTTGACTGAAGAGATGGATTCTTTCTTTTCCTCTTA
AAATAATGTCAAGCACTGGTCTTTCAAGCAGCTAGTTGAACTCTAAAGTACGGGTCACCTGATAG
AAGTGAGCGATGGTGGACGTAAAAAGAAGCCAGGCTGGCGTTTGGCTAGCTCCCTTTCATTCCTT
TCATGGCTTTGGGCATGTATTTAGGCTTTAGTCCGGGCGGAAGCA
Found at i:10730 original size:14 final size:14
Alignment explanation
Indices: 10711--10740 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
10701 GTGTTTTTAT
10711 ATATATATATATAA
1 ATATATATATATAA
10725 ATATATATATATAA
1 ATATATATATATAA
10739 AT
1 AT
10741 TGGATTTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
ATATATATATATAA
Left flanking sequence: Indices 10211 -- 10710
TAGGGCTCTCTTTCTAATACGTCAAGTAAGAATGACTGGGTGCACCGATCTCTTACCTGCTTCCC
CACCCTTCCTTCATGCTAGTTTTTTCGAGTCAAATACGAATTGAGATAGGATACTTCAGTGGCAA
GGGAAAGGCTAATCCGAGTGATGGCCTTGCTAACATACATAGCAAACAAAGCAAGGATTCCAGCT
AAGAAACCAACAATGAAAGCTTTAAATCGGCCCATATAGTCCGTTGGATCTTATACTGAGAGGAA
AGGTGAAGGTATATGGAGCCTTCGACAGGTGTATCCCCGACTCCGGATTTCTCCCCTATAACTAG
GTTCTATTTTCATGTCTTAAGCAAAAGTCAACAAAAGTCTTATCGCTTGGAGAAAGAGATAGAAA
GCTAGAACAAGTCCAGTATTCGAATTCCTCTCTCCCTAAGCTTAGCTATTTCATCAGCTTTGAAT
GCTAGCTCCGCTGCAAGAGTCAGTAGTTCTGGTCTGTGTTTTTAT
Right flanking sequence: Indices 10741 -- 11240
TGGATTTAAAAGCAGGTGTCGCAGAAGGCGGCAAAGGACTTAGTCGGGGAAGGAGTAGTTCGGTG
GGGGCGGGAAGAGAAGGGCGTAATATTTTAATAGAAAAGAAGAGCTGGGTCGAGGGAGCTGATCT
AGTAAAGGGAGGGTAGGTTCTTTATTATAAGTGCCACACACCAGGACCAGGCTTTCTCACTTGGA
CAAGAGGAGATGTGGCATTGCTAATCCGATCTTGTACCCAGGGTTTGATACAAATAAAACCAGCC
CAATCGAGATGAATTGAATGCTTTGCTTTGACTGAAGAGATGGATTCTTTCTTTTCCTCTTAAAA
TAATGTCAAGCACTGGTCTTTCAAGCAGCTAGTTGAACTCTAAAGTACGGGTCACCTGATAGAAG
TGAGCGATGGTGGACGTAAAAAGAAGCCAGGCTGGCGTTTGGCTAGCTCCCTTTCATTCCTTTCA
TGGCTTTGGGCATGTATTTAGGCTTTAGTCCGGGCGGAAGCAAGA
Found at i:17298 original size:9 final size:9
Alignment explanation
Indices: 17284--17308 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
17274 TTGTTAAGGT
17284 CCTTCGGAC
1 CCTTCGGAC
17293 CCTTCGGAC
1 CCTTCGGAC
17302 CCTTCGG
1 CCTTCGG
17309 TCTCTCTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.44, G:0.24, T:0.24
Consensus pattern (9 bp):
CCTTCGGAC
Left flanking sequence: Indices 16784 -- 17283
GGGCTGTTTGGTTTGGTTAAATGTGCCATCCATAGGCAGCTGACGAAGAACCTCCATCAACCACT
TATGAAGAGGGTGTAATAACCTCTGGTTCACCCAGTTCCCTACACTATGAAAATATCCGTCTTTT
GCCACCTCCCTCAATCGATTGACCGAGCCTTCCAAGGTCCTTTCTTCCTCAGACCGAAAGGCAAA
GCCTGAAGCGGCGTATGAGCGAGTCCAAGTGTGAAAGTGTCCTTATAACAGCAATCTTCGATACA
TACTATGTGTTTCATGCCCCTTCGGACAGAGAACATGGACGATGTGTCAAGGTTTCATGTGTTAA
CTTCAGTCCTTGTGTTCCACTCTGTGTCTTGGGAGTCTTCGACCTCTATGTTTGACCTTCGTTCC
ACTGCGTTTCACTTCTGCCTCGGTCTTCGACCTTAAGTCTTTCTTGGGAGTTCCACTCTGTATCA
GGTCTTCGACCTCAAGGTTTCTCGGGCTGCGCCCTTTGTTAAGGT
Right flanking sequence: Indices 17309 -- 17808
TCTCTCTTTGAGGGGACCCTTTGGGTCCTTTGGACAAAGCACAGCGACCCATAGGGTCTTGGATC
TTGATCCTTGGGTCGTTGAGGAGCCTGCGGCTCTTGGAGTTATGTCCTTCGACCCTTCGGGACCC
GTGCCTTGGTACTTGGTATTATGCGCTCCGGACCTTAGTACTAGGTAAGCGCTGTCCGACTTTAA
AGCTTTTTACCCTCAGGTAAAGTCCGCTACCTCGGATTATACGTCCAGTCTGGTTAGACGTCCCG
AAGGACTCGTTAAAGGGACCCATGGACAGAGAAAGGGAGGGACCTTTTATCAGGCTTTCTCCGAT
CTTTGCGTTTCCCATGGGAAAACGTTGCTGTCCTGTGCTTTCTTTCTCTTGGTATGGCACATGCT
TGTGATCGATCAAGCTAGGGAGTATGCTTTCCCTGCCATCGGTAGTACTATCGATTCATCTTTCC
TTGCGGTTCAAAGCTTCCTTGAGATCTATCTCTCCGGTCCGGTAT
Found at i:42238 original size:24 final size:24
Alignment explanation
Indices: 42211--42258 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
42201 TACTCTTAGA
42211 TACATTATTCAGATAACTAGAATT
1 TACATTATTCAGATAACTAGAATT
42235 TACATTATTCAGATAACTAGAATT
1 TACATTATTCAGATAACTAGAATT
42259 CCGATAACTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.38
Consensus pattern (24 bp):
TACATTATTCAGATAACTAGAATT
Left flanking sequence: Indices 41711 -- 42210
CCTGTCTTTCTTTGATAAAAATCAATACGCTCTTTATAAGGTTCCTCCCCCGAATGAAATTCAAT
AGGATCCAGAGAGACCATGTCTTCATCCACAGGATCCCACGTACCCGGATCAATCGAAAGTTCGA
TTCTATCTGAACTACTCATTTGAAAATGATATCCGCATTGTTCGCAAATATTTATTTTTGACTTT
AAATTTATTTTCTAATAAAATCCATAACAATTTTCGCATTGAATCCACAAATGCCTGTATTTTTG
AGCTACATATAGAACATTAGAACTTTTTAAATCACTACCATTCGTGCTAGTTTGTTTACTGGAAC
TCCCGTGTTCACTCCTAGTTCTACTTTGACCACAAATGTAACTATAAATGTAACTGTCACTGTAA
TTGTTACTACCACTTTAAATGTAATTATTAATGCAACTATTAATGTGCTTATTCCAACTATATTT
AGTATCATACATGTAACGATCATAGTGGGGATGATTACTCTTAGA
Right flanking sequence: Indices 42259 -- 42758
CCGATAACTATAAAAAAAACTTTCTAGTTCACTCAAAAAAGACTGATCGTTATCAATCTCAAAAA
TATGATTTTCAATATCAAAATATATGAAATAACTGACCCCATTCCTATCCCTAACTAAAAAAGTG
TCATCAGAGATGAAATTCCGAATGTCCCTGACGCCGAATAAATGATCAACATTACTATAACTAGA
ACTCTTAATTTGACTCCAATTATTAATGTTTTTATCCGTATTATTTATAACCCGGTCTTCACTTC
CACTGGTATTTTCAATAGGATCAGGACTGTCCGTTGATTTACTTAGCCCACACCTGTATTCTAAC
TTCTCGTTAGACAACATCGAATTGAACCACCATTTTTCCATAGAGCTTTCTTGCCCCCTATTTAC
ATTAAAATACAATAAATGAATAGTCATTCGATGAAAAATCATTTGAATATTTCATTTCCTATCAC
AATAAGCATATAGATCCAATCAGTAGGATTATTAACTAATAACGA
Found at i:59578 original size:34 final size:34
Alignment explanation
Indices: 59535--59658 Score: 114
Period size: 34 Copynumber: 3.6 Consensus size: 34
59525 GATCAAAGAT
*
59535 CAGCCTGATC-TACGAGCACCCTTCTCGTTCCGAC
1 CAGCTTGATCGTA-GAGCACCCTTCTCGTTCCGAC
* *
59569 CAGCTTGATC-TACGAGCAACCTTGCTTGGTTCCTGA-
1 CAGCTTGATCGTA-GAGCACCCTT-C-TCGTTCC-GAC
** *
59605 -A-AATGATCGTAGACCACCCTTCTCGTTCCGAC
1 CAGCTTGATCGTAGAGCACCCTTCTCGTTCCGAC
59637 CAGCTTGATCGTAGAGCACCCT
1 CAGCTTGATCGTAGAGCACCCT
59659 GATTTACAAT
Statistics
Matches: 72, Mismatches: 11, Indels: 14
0.74 0.11 0.14
Matches are distributed among these distances:
31 2 0.03
32 6 0.08
33 2 0.03
34 50 0.69
35 4 0.06
36 6 0.08
37 2 0.03
ACGTcount: A:0.21, C:0.34, G:0.19, T:0.26
Consensus pattern (34 bp):
CAGCTTGATCGTAGAGCACCCTTCTCGTTCCGAC
Left flanking sequence: Indices 59035 -- 59534
GTCGGAGATCAGAGCGCTAACATGATCTACGACCAACCTTGCAGTCAAGTCCTTTCGAGCCGTAG
TTTGCTTCTTCTTGAGAAGAGCTGAAACCCTTCTCAATGGCAATGTGAATTAGTCACAAACTTTA
GTTGAGGGGGTCGACTAGTTCTTTTCTTTCTTTTTTCGTGATTTTTTTATTTGAGTTGTGAGGAA
AATTTCTTCTCGGACTACGCTCTCCTAGGCGATGATCTCGTTCGTTCTAGGAAAGGAGAGGTATA
GCAAAGAGTACCCAAGAAGGGATCGCTGAGTTAGGAGTCAAGATATCAATAGCCAAATCATGGAG
CAAGAAAAGGCCCCGGCTAACGCGCCTTTCTCCAGTAAATCTTTCGCTAACGAGCGCTCATCCTG
TTTCAAAGGCGCGCTAGCACGCTTAATATTAATAGTAAAGATAGTCAAGGGCCGTTGCTTGTTTG
GTCGTTAGATCAGAGTAAGATCGTAGACCACTTCTGATCAAAGAT
Right flanking sequence: Indices 59659 -- 60158
GATTTACAATCAGCCTGCCTAAGATCGTAGGGGAGCACCCTGATCGTTCCGACCACTTCTGATCA
AAGATCAGCCTGATCTACGACCAACCTCTACCTATCGATCCAGACCCTGCTTGAAAATATGCTTC
AAACGCCTCTTTGATTTTTCAAAAAGAAAGAAGTAGTAGTCTTCCCGGGTCTCACTGTTCGGATA
ACTTTCCTTTGAATCCTACTGCATAGGCAAGATCTCATCCTTCGGCGAATCTTGGGACTCAGAAG
AGTGCTCCCTACGACGGGAAATCGGGGTCCAAAGACCATCTCTTCGACGACGTGGACACGGGGAA
TCCCATCATGGGCGATCCGACAAGAGAGATGCAGAAGAATATGCCCTCCTCAACGGGTCAAGCCC
CCGCTCAGAACTAAAGGATCCTGAACATCGGCACTCACTGCATGAGCTCATAGGGCAAGATGAAG
ATCCGGATAAAGGCTAAACAGATCGTCACCACACATCGTCAACTT
Found at i:66790 original size:18 final size:16
Alignment explanation
Indices: 66767--66801 Score: 52
Period size: 18 Copynumber: 2.1 Consensus size: 16
66757 TTTGATACAA
66767 TTGAAAAAGAAAATAAAT
1 TTGAAAAA-AAAA-AAAT
66785 TTGAAAAAAAAAAAAT
1 TTGAAAAAAAAAAAAT
66801 T
1 T
66802 ATTTTCCGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 5 0.29
17 4 0.24
18 8 0.47
ACGTcount: A:0.69, C:0.00, G:0.09, T:0.23
Consensus pattern (16 bp):
TTGAAAAAAAAAAAAT
Left flanking sequence: Indices 66267 -- 66766
TCTCATATTCCCACAATTCAATTAGATGCGAAATCTAGAAAGCCCCTTTTCATGGTTGTAGAAAA
GGTTTTTTTCTTTTTGTTCGAATCCTTTCATTTTAAGGAATTGGTTGGTCGTACAATAACAAGTA
TTCTAGTAGATAGTCTTCGATGAAAGAAACAGAACAAACAATAAAATAATTGGAACAATCAATAT
TCGTGATGCAAGCATTGCTGTATTAGATCCAAAGGTTTTTTCTTGACCTAGCTACAAGGGTGGGA
CTCCCTAATATTGAAATAAAAGAGAACCTAAAAGGAAAAGAACATAGGAATTAGTAGTCTTAGAA
TCGAGTTAGACCGAAATAAAGGTTTGATTTCTTCGAGCGATCGTGCGATAATTTCTTCTCATTCG
AGATATTATGTGCAATTAATGAACCTACTACTGAATCTAATGAGTTAAAGTCAAGTCAAAGTCTT
AGTTGGTCGTTGTTCGTTCCAAAATAGAAAATGGATTTGATACAA
Right flanking sequence: Indices 66802 -- 67301
ATTTTCCGGAGTTTCATTTGTGAATGAAGTTACACGACACAGTTCTTATTACTATTACTTTATAA
AAGAGTTGCCATATCTCGGAAATTGGGTCTGTTGATTCGGAATCACGGGATGGGTAGATGTAACA
GATGATGAATCCATTTTTTTTTTCTACCTCTGTAACTCTATCTTTGTGAGTGCCTTCTATAAGGA
TAATGACTGATGAATCAAAAACTGTCAATTGGTATTTTTTCTTATCCTCGTATCTTGCAAAAATG
GAAACTTAGGTAAGTTTTTTAAAAACTTTATTATTATATATATAAATAACGTATCTCATTTAGCT
TCTTCATGCTTACTATAACTAGTTATTTCGGTTTTCTACTGGCGGCTTCAACTATAACCCCAGCT
CTTTTTATTGGTCTGAGCAAGATACGACTTATTCGAAATTCATTGAATGAACAATTCATAAAAAT
AAATGTTTCTGTGAGATTCCAGGTATGGAATACTGCCTTCCCGCG
Found at i:72279 original size:16 final size:16
Alignment explanation
Indices: 72258--72312 Score: 60
Period size: 16 Copynumber: 3.4 Consensus size: 16
72248 AGTGGTCGTA
72258 GAGAAGGCTGATCTAT
1 GAGAAGGCTGATCTAT
*
72274 GAGAAGAAG-TGGTCGTA-
1 GAGAAG--GCTGATC-TAT
72291 GAGAAGGCTGATCTAT
1 GAGAAGGCTGATCTAT
72307 GAGAAG
1 GAGAAG
72313 AAGTGGTCGG
Statistics
Matches: 32, Mismatches: 2, Indels: 10
0.73 0.05 0.23
Matches are distributed among these distances:
15 3 0.09
16 16 0.50
17 10 0.31
18 3 0.09
ACGTcount: A:0.35, C:0.09, G:0.36, T:0.20
Consensus pattern (16 bp):
GAGAAGGCTGATCTAT
Left flanking sequence: Indices 71758 -- 72257
TTACCAATCGCGGGTAACCCCCGGGGCGGCCGCCCCTGACCTAATAAGAACGATTATCCTTATGA
CCAAACAAGGACCAGCTTACTTACTTCTCGAGCGAGAGTTCCACGATCCCGACCAGCAACTTGTT
GGGAGTAGGGGCATCAAAGCTTGCCCAACCTAGTAAAGGGGCTTGGAGATAGAGGGTTTTCTGGG
GGAGATACAGTTTCCAGGTTGGATTTTTGAGATCAAATAGGACTAGTTGGGTAGATAGAGGTGGT
GAAATCTAACCTTTGCATCGATGTTTGGCAGGACGGGTCGCTTGAGTGTCAAAACCAAGCGGTGG
AATAAAAACCTTGGCTTATCGAACCAGCGTATGCCCATTCCTCCTTTGATGACTCCCAGTAGATA
AAGTCTAAATTTTCCAATGTGGATTGAAAGGAAATTGGGGAACATAGAGCACTTTTGACAAAGAA
AGGGTGGTCTACGATCAGGCTGATTGAAGATCAGAAGTGGTCGTA
Right flanking sequence: Indices 72313 -- 72812
AAGTGGTCGGAACGAGAGGGCTGATCTATGATCAGGTTGGTCGTAGATCTTAAGAGGGTTGGTCG
TAGATCAAGGTTTTTGGCTCGCAATAAAGCTAGGGTCCTGATCGAGCAACTAGTAGTCCTATCTA
TCTACCTCTCCAGACACAATATCTTGAGTACCTATGATGGTGACCACATCTGCTGGCATGTGATG
TTTGGACATAGAATCGAGTCCTTGTGAATGGGCAGAGCCAGGTGCTCTTATTTTACGACGGTAGG
GACGATTGCTTCCATTACTGACCAGAAAGACACCAAATTCTCCTTTAGGTGCTTCAACTGCGGTA
TAGGTAGAAGGAGCTGGTACGGAAAAACCTTCTGTATAAGGTTCGAAATGGTGAATTGAGGTAGA
GTAGACCGATGATCCTGTAGTCATTTGGCCGGCTATTGAAAGAAAAAGCTTGCATCTGCTCCCCC
TATTATATAACCGGTCCCATCTCTCTCCAGACCTAACGTGGTAGT
Found at i:72342 original size:35 final size:33
Alignment explanation
Indices: 72245--72343 Score: 162
Period size: 33 Copynumber: 2.9 Consensus size: 33
72235 ATTGAAGATC
72245 AGAAGTGGTCGTAGAGAAGGCTGATCTATGAGA
1 AGAAGTGGTCGTAGAGAAGGCTGATCTATGAGA
72278 AGAAGTGGTCGTAGAGAAGGCTGATCTATGAGA
1 AGAAGTGGTCGTAGAGAAGGCTGATCTATGAGA
* *
72311 AGAAGTGGTCGGAACGAGAGGGCTGATCTATGA
1 AGAAGTGGTC-GTA-GAGAAGGCTGATCTATGA
72344 TCAGGTTGGT
Statistics
Matches: 62, Mismatches: 2, Indels: 2
0.94 0.03 0.03
Matches are distributed among these distances:
33 43 0.69
34 2 0.03
35 17 0.27
ACGTcount: A:0.32, C:0.10, G:0.37, T:0.20
Consensus pattern (33 bp):
AGAAGTGGTCGTAGAGAAGGCTGATCTATGAGA
Left flanking sequence: Indices 71745 -- 72244
TCTGGTTGTGCCATTACCAATCGCGGGTAACCCCCGGGGCGGCCGCCCCTGACCTAATAAGAACG
ATTATCCTTATGACCAAACAAGGACCAGCTTACTTACTTCTCGAGCGAGAGTTCCACGATCCCGA
CCAGCAACTTGTTGGGAGTAGGGGCATCAAAGCTTGCCCAACCTAGTAAAGGGGCTTGGAGATAG
AGGGTTTTCTGGGGGAGATACAGTTTCCAGGTTGGATTTTTGAGATCAAATAGGACTAGTTGGGT
AGATAGAGGTGGTGAAATCTAACCTTTGCATCGATGTTTGGCAGGACGGGTCGCTTGAGTGTCAA
AACCAAGCGGTGGAATAAAAACCTTGGCTTATCGAACCAGCGTATGCCCATTCCTCCTTTGATGA
CTCCCAGTAGATAAAGTCTAAATTTTCCAATGTGGATTGAAAGGAAATTGGGGAACATAGAGCAC
TTTTGACAAAGAAAGGGTGGTCTACGATCAGGCTGATTGAAGATC
Right flanking sequence: Indices 72344 -- 72843
TCAGGTTGGTCGTAGATCTTAAGAGGGTTGGTCGTAGATCAAGGTTTTTGGCTCGCAATAAAGCT
AGGGTCCTGATCGAGCAACTAGTAGTCCTATCTATCTACCTCTCCAGACACAATATCTTGAGTAC
CTATGATGGTGACCACATCTGCTGGCATGTGATGTTTGGACATAGAATCGAGTCCTTGTGAATGG
GCAGAGCCAGGTGCTCTTATTTTACGACGGTAGGGACGATTGCTTCCATTACTGACCAGAAAGAC
ACCAAATTCTCCTTTAGGTGCTTCAACTGCGGTATAGGTAGAAGGAGCTGGTACGGAAAAACCTT
CTGTATAAGGTTCGAAATGGTGAATTGAGGTAGAGTAGACCGATGATCCTGTAGTCATTTGGCCG
GCTATTGAAAGAAAAAGCTTGCATCTGCTCCCCCTATTATATAACCGGTCCCATCTCTCTCCAGA
CCTAACGTGGTAGTTTCCCATCATAGGGCTTTCTATCTATAGATT
Found at i:76668 original size:43 final size:43
Alignment explanation
Indices: 76602--76694 Score: 177
Period size: 43 Copynumber: 2.2 Consensus size: 43
76592 TATCAAAGAT
76602 CAGCCTGCCTAAGATCGTAGGGGAGCACCCTGATCGTTCCGAC
1 CAGCCTGCCTAAGATCGTAGGGGAGCACCCTGATCGTTCCGAC
*
76645 CAGCTTGCCTAAGATCGTAGGGGAGCACCCTGATCGTTCCGAC
1 CAGCCTGCCTAAGATCGTAGGGGAGCACCCTGATCGTTCCGAC
76688 CAGCCTG
1 CAGCCTG
76695 ATCGTAGATC
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
43 48 1.00
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.19
Consensus pattern (43 bp):
CAGCCTGCCTAAGATCGTAGGGGAGCACCCTGATCGTTCCGAC
Left flanking sequence: Indices 76102 -- 76601
GGAGTTGATGCTCCCACATCCATAGCATGAGTAGTTAAAGCAAGTGAATGATTTGAAATTCGAGT
TATTTCACGGAATAACACTCGTATATATTGAGCTCGTAATGGTACCTCGCAATTCAAAAGTCTCT
CTACGGCTGAAGAATGAGCGTGCTCTTGGGCCATCGTAGAAACATAGATAGGGTCGACGACGGAA
CGAACAACGAAACTTTACGACAGCTTTTTCGTACACGTTCACTTGCATCACATACACAAGTGCTC
TCTGAACCGTGCAATAAGGTCACCCATAACACGGCTCTCCCACTTTAGTTACCTTAGCCCCAGGC
CATGCTATTCAATAATATTGGAAAAATGGCAGCGTAACGTAACAACTAGTATTGAAAGCTGGTCG
CCTTTTGAGGGAGAGAAAGCGTTTCAATAGGAGCCCTACTTCCCCTCTCTACGCCCACTAAGATC
ATAGATCAGCCTGCTTAAGATCGTAGACCACTTCTTATCAAAGAT
Right flanking sequence: Indices 76695 -- 77194
ATCGTAGATCACCCTCATCACTTCAATGAAAGCGCAAACCAATTTATTTCTTAGTCACCGGGCGG
AGCGCACCTTTGGTACTTCAGTAGGGCGAGCTGTTTGATAGTGACTTCTTTCGTTTGGTAGGGCG
ACGAAAGGCTACTTCAATCTAGGAAACAGCCGGAAACTCGAGAAACTTTGGAAGCGTTCGCCGGT
AACCAAAGCGTATCGTTCCCGCAACCACTTTGGTACTTTGCTTAACACTTTTTTAGGTTATGCAA
TAGAAGGGGGGCTTGCGCTTGAATTGAAGTAGCGCCTTTGGAATATGAGTAGGGCTCCTAGGTGG
CGCGTTCGTGGAGGCAAACCGAAGGAAGAGCAAAAGGAAGGTTAGGTGCTTGTGGGGCGAGGCCA
CCCGACCTCGAATAGGAGGGGGGCTTAGCTCTGGATCCTCCCTGCTTGCAGAAATGAATGGATCA
GAAGGGGGCTGGGTTCTATTTCCGGGCCGGGCTGGAGGTGAAGGC
Found at i:82221 original size:16 final size:16
Alignment explanation
Indices: 82130--82222 Score: 51
Period size: 16 Copynumber: 5.5 Consensus size: 16
82120 AAATTCCTTT
82130 CCCTAGATCTACGACCA
1 CCCT-GATCTACGACCA
*
82147 CCCTGATCGTTCCGACCA
1 CCCTGATC--TACGACCA
* * *
82165 GCTTGATCTACGAGCA
1 CCCTGATCTACGACCA
* ** * *
82181 ACCTTCTCTTTGCGATCA
1 CCCTGATC--TACGACCA
*
82199 GCCTGATCTACGACCA
1 CCCTGATCTACGACCA
82215 CCCTGATC
1 CCCTGATC
82223 AATGCTGCTA
Statistics
Matches: 55, Mismatches: 17, Indels: 9
0.68 0.21 0.11
Matches are distributed among these distances:
16 27 0.49
17 4 0.07
18 24 0.44
ACGTcount: A:0.22, C:0.38, G:0.16, T:0.25
Consensus pattern (16 bp):
CCCTGATCTACGACCA
Left flanking sequence: Indices 81630 -- 82129
TCAAACACAGTTTAGTCTCAGACAAGTAATGAGAAATTATTAGATGATATGAGATCACTCACCTC
ATAGTGCTTTTTATATGAATTTCATCCTAAAACATTCCATGCTGCCAGCTTCATGAGGAGTATCC
GATTCAGTCTGCTCCGCAGCCATCAAGTCTTTCTCCTGGATTGAAAGATTTTTGCACCTTCTTTT
GTTTGGAAGGGCTTGTATGAAAGTTGGGGGTGGAGCTTTCTTTTTCTTCCTCCACTCTTTTGTCT
TTTGATCTTGTTAATGGAGGTTGCACTTTGAGAATGACTATAGTGCTCTTATTTGTCACTGTCCC
AGTACCAAATACATCTGTCCTAGGTTGAGGATTTTGGATCAGATCCATTTCAGCACCCTTACTGC
CCTGTTCAACACCTCTGCCACATACTCTTCATCCGGAGGCCTCTCAGCAGTTCTTGAAGCATCAG
CTATGGTTTCTGATCTGCCTTCTTGAATCAGGTTCAAATTCCTTT
Right flanking sequence: Indices 82223 -- 82722
AATGCTGCTATCATCATTCATAGCCAAAGGTTCTGCTTCCAAGCTAGCAGCAGACTGAACCAATT
GATCCTCGTTTGAGTTTTCATTGGGAGCATCTAACACAATGAATCTGTTTGCTGTAGTAACAGCA
TTCTTCTTTTTCTTTGCTTCGACTCCAGCCGTCTCAACCTTTGAAGCTGCCTTGGGCTTTGAGTT
GAGCGCCTCTTGCTAAGGTGCATTTCTAGGTCATGTGCCTTGGTGCATAAGTCATTCAAATCATC
AAAGGTTTGAGGCATGAGATGTACTGAGAGTTCATGCCTCAAAGGTACATACATTCGGACCCTTT
CGGCCTGCTATGTCCTTTCTTTATGCCCCTACCAGGGAGGGGAGGAAGTGGCAGGTCCTCCAGGG
CCAGGGAAAGACGGGGTAACCTTTTGCGGACACCTGAAAGGAAGGGCTTGCCATCTCGCGAGAAA
GTCAGACACAAAATCATTGTCACGCTCCTTGCTTTCAATGAGTTC
Found at i:106464 original size:30 final size:30
Alignment explanation
Indices: 106430--106506 Score: 154
Period size: 30 Copynumber: 2.6 Consensus size: 30
106420 TCTGCTTCGG
106430 CCGGAGATCCGATGTCTCTTGACCGGACAT
1 CCGGAGATCCGATGTCTCTTGACCGGACAT
106460 CCGGAGATCCGATGTCTCTTGACCGGACAT
1 CCGGAGATCCGATGTCTCTTGACCGGACAT
106490 CCGGAGATCCGATGTCT
1 CCGGAGATCCGATGTCT
106507 GTCTCGTATG
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 47 1.00
ACGTcount: A:0.19, C:0.30, G:0.27, T:0.23
Consensus pattern (30 bp):
CCGGAGATCCGATGTCTCTTGACCGGACAT
Left flanking sequence: Indices 105930 -- 106429
GCTTTAAGTCCGCAAATAGTATTAGCGTATTAAGATTAAGATGCTCGAAAGGGTTCTTAGTCAAG
CCAGAAAGGTGGTTCTAAAACCACAGTTTTTCGAGAAAAGGTCCCATCCTTCAATATCATGATTG
GGTCGACCAGGCCAGATCATGATGTAGACGCGAATAGACGCCTATATGTATAAGCATTTTCCATT
TTATAGGAATAACAACTATCGAAGACTCTTTTTTATTTTGGTCAGATTAACTACTTTTTTTCTGT
TTAGTGCAATTTTGTACGTAGGTTTGTTTATTTTAGGGTTCGATTTACATCTGCAGCTTATGAAA
TTGGAATCCCTTCTTCTTGGAAGAGGACTCTCCTTTTTATTACAAAGGGTCGGGTGGGAAGTAGG
TCTCTTTTTTTCAATCCTTTTGGCTCTTCTTAATCTAGAAGGCGCACCCACTCTAGGTAACATGA
TGTTGCCAGAAGGCACTCAAGGGCCGACTTCCTCTTCTGCTTCGG
Right flanking sequence: Indices 106507 -- 107006
GTCTCGTATGAGCAGCCTAGGTCGGCTGGGAATCCTCCAAAAGAGAGTGTGGCCAGTAATCCAAT
TGAAGGGGGCCGAGCTTCGAGCTCGAAGACTCGTCGTCATATAGAGGACGAGGTTATGAAGTCGC
TGACCGACCTCCTTGACAGGGAAGGGGAAAAGTCGGATATCTCGCGGGATGCGATATCCGACATT
CTAAAATTACATAAACGTACGGAACCCGAACTTCATGCCGTACTATCCCACTTGCATTACGAGGG
AGTCCGTTCTCCCTGGTATCGGGAGACTCTTGAAAGACAAAGAGTGCTCGAAACTCTTTCTGAAG
ATGAAGATGCGTAGATAGGGCTTAAGAAGATCATTGCTTACTCCCCAGTAGCCCATATGAATCTG
GTGACTATTGGTATGTTTAGTCGGGCGGCGGCCGTTAGGTCACCTATTTTGAGTTATGGACACAC
AAGGCCAAAACATGTGTGCCGGGCGTGCGACCCATCAACCTACTA
Found at i:123770 original size:13 final size:13
Alignment explanation
Indices: 123752--123777 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
123742 GGTCGATCCC
123752 TATCACCTTCGGT
1 TATCACCTTCGGT
123765 TATCACCTTCGGT
1 TATCACCTTCGGT
123778 GCCTCCTTGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.15, T:0.38
Consensus pattern (13 bp):
TATCACCTTCGGT
Left flanking sequence: Indices 123252 -- 123751
TTTTTATTCGGATAGGATTTATGATGGCTTCGTCGGGAGGCTCGCGTAGTTTGTTACGTCAGCTC
CAAAAGGATAAGTTGCGTTGGAATCGAGAAAGTTCCGTGGAGTTCATAATTGCAATAAATGCAAG
GAGTCAAAGTAGTGGCTGCGACGCGTCGAGGCACTTCTTCGACGGTCCCCGTCCGCCCGGCCTGC
CGGCCCGCTCTGAAGAATTCATGGGCCGGCAGGCGGGCGAGACAGAATGGGCGGGCACTACTAAC
CAAGCCAAGCCTAGTTCTCGCCGATAGGCGCTGGTAGCTTGCTTCCAAGCCTTGCCTTATATAAT
AGTTGTGGCCATGGCCCGAAGGAGCCTTAAGCACTTGTACAATGCTCAAGTCAAGGCTCTGGGCA
ACGAGTAGGATGGAGCCTTTACTTTCTATTATATTTGTAAAGCGTGCCATATATCTTGAGGGAAG
GGAAAAAGGGGTCTCTTTCCTCGCCCGATGGTAGAGGTCGATCCC
Right flanking sequence: Indices 123778 -- 124277
GCCTCCTTGTGGTCCTTCTCTTTAGCTTTTCCTCGGCCTTTAGAGCTAGTTGATAGGCCACTTAT
CACATCCGATGCATCGATATTTCATCTCGGATTTCGAACCTAAAGCCCTATCAAGCAAGGGATTC
TTCGTCGGATTCGTTCAAGCCATTGCGAATAGACAATTGGTAGAACTCCGCAACTTGTTAGGAGT
AGGGGCTTTCTTGTACGCTTCTCTCCCCCCTATCCTTTAAAGCGAAGTGGAACCTTTGGAACAAG
CTTTGGGTCTAATCGGAGGGTAGAAATTTCTCCCGCAACCTCGATCGCATCTTGTCCCATGTACT
TCCCTTTGCCTTTCCGCTCACGCCTTGCTTGGACTTGATCCCACCAAATTGAGGCATGACCCGTG
CTCAGGAATTTCACCTTCGCACACCTCGGATAGTTCTTTGATCATGTGATCGGATCTAGTCGATC
GGATTTGAATCGGAGGTCTTGAACTCGAGTTTGTGAGAGACTCTT
Found at i:133854 original size:33 final size:36
Alignment explanation
Indices: 133771--133872 Score: 129
Period size: 36 Copynumber: 2.9 Consensus size: 36
133761 ATGACCGTAC
*
133771 ACAGAAGGACAAATATGATTTACAATCGATACCACA
1 ACAGAAGGACAAATATGATTAACAATCGATACCACA
* *
133807 ACAGAAGGATAAATATGATTAACAATGGATA-C-C-
1 ACAGAAGGACAAATATGATTAACAATCGATACCACA
** *
133840 TGAGAAGGACAAATATGATTAACAATCGCTACC
1 ACAGAAGGACAAATATGATTAACAATCGATACC
133873 TTCGTATACC
Statistics
Matches: 57, Mismatches: 8, Indels: 4
0.83 0.12 0.06
Matches are distributed among these distances:
33 26 0.46
34 2 0.04
35 1 0.02
36 28 0.49
ACGTcount: A:0.46, C:0.17, G:0.17, T:0.21
Consensus pattern (36 bp):
ACAGAAGGACAAATATGATTAACAATCGATACCACA
Left flanking sequence: Indices 133271 -- 133770
TAGCTTGGCTTCTGACATACGTATCCAAATGTTCTATCAGAGTTGATACGCGAACAGCTGGAAGT
TCCTGAATACAGTTGAAGAGAACACCAAATACATAAATAATAATGGCCTCCAAAGTATACTGATC
AAAGTATTCAAGAGTTAATAAATCATTTTTAGTAAGCTTACATTTCTTAAGATATTCCTTTGCTG
TAAGTTCATCTTTAGATATTATTATCTTAATTAAATCAGGTGTAAGCTGATATATGTTTTTAATA
TCGTCATATTTAAAAGTAGCATCCTCAATCGATGTTTGAATACTGATTAATTCTTCTTCTGTAAA
TGAATCCTTATCTTTTTTAGAATTATTCAATAAATCAATCACATACTTATGATATTGAGAAACAT
TAGATTCAGATCTGGAATTAGTATTACTATCATCCAACAGTTGACTATAAAAAGATTCCCAGAAC
TTCTCAAGAATAGTATCCTTCGTTGAATAACATCTATGACCGTAC
Right flanking sequence: Indices 133873 -- 134372
TTCGTATACCTAGATTGGTATTTCCTGTTAAATAACAGACTTTTCATGTGTGAACGCCGTGGTAC
AAGACCTGGGCCAAGAAGTGCTTGGGGATGAGATTTCCAGCTGATCTACGACCACCCTCAAGCGT
TCATTGACCAGAATGTAGAGCCTGTTGGGCATGAACCAACGGTGGTTGAAGAAAGAGATAACCCA
GAGAGAGGGTTTTTATTCCACTGCCCACTGCAGATCAAGTGGCTGATCAGAGCTCAGAGACTAGA
AATGCTGAACACATGGAAAGTACCTCTCACCCCTATTCTCCCCAAGAAAGGGAGAAAAGACCAAT
TTAGTCTCCAAAGCCGGTGAGCTTCTAAGCTTTATCTGAACACTTTTTCCTTTTTTGTTGCTCCT
TTTGATCGCTGTTGTTGAATCAGGTTGCTGAAGATGTCCCCTCATCCTCTTCTGAGGCCATTATC
CCTCAAGCTAGTGAGCTCTGACGTCGACCCTTCAATCCTCATCAA
Found at i:133873 original size:33 final size:33
Alignment explanation
Indices: 133772--133873 Score: 123
Period size: 33 Copynumber: 3.0 Consensus size: 33
133762 TGACCGTACA
* *
133772 CAGAAGGACAAATATGATTTACAATCGATACCACAA
1 CAGAAGGACAAATATGATTAACAATCGATA-C-C-T
* *
133808 CAGAAGGATAAATATGATTAACAATGGATACCT
1 CAGAAGGACAAATATGATTAACAATCGATACCT
* *
133841 GAGAAGGACAAATATGATTAACAATCGCTACCT
1 CAGAAGGACAAATATGATTAACAATCGATACCT
133874 TCGTATACCT
Statistics
Matches: 58, Mismatches: 8, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
33 29 0.50
34 1 0.02
35 1 0.02
36 27 0.47
ACGTcount: A:0.45, C:0.17, G:0.17, T:0.22
Consensus pattern (33 bp):
CAGAAGGACAAATATGATTAACAATCGATACCT
Left flanking sequence: Indices 133272 -- 133771
AGCTTGGCTTCTGACATACGTATCCAAATGTTCTATCAGAGTTGATACGCGAACAGCTGGAAGTT
CCTGAATACAGTTGAAGAGAACACCAAATACATAAATAATAATGGCCTCCAAAGTATACTGATCA
AAGTATTCAAGAGTTAATAAATCATTTTTAGTAAGCTTACATTTCTTAAGATATTCCTTTGCTGT
AAGTTCATCTTTAGATATTATTATCTTAATTAAATCAGGTGTAAGCTGATATATGTTTTTAATAT
CGTCATATTTAAAAGTAGCATCCTCAATCGATGTTTGAATACTGATTAATTCTTCTTCTGTAAAT
GAATCCTTATCTTTTTTAGAATTATTCAATAAATCAATCACATACTTATGATATTGAGAAACATT
AGATTCAGATCTGGAATTAGTATTACTATCATCCAACAGTTGACTATAAAAAGATTCCCAGAACT
TCTCAAGAATAGTATCCTTCGTTGAATAACATCTATGACCGTACA
Right flanking sequence: Indices 133874 -- 134373
TCGTATACCTAGATTGGTATTTCCTGTTAAATAACAGACTTTTCATGTGTGAACGCCGTGGTACA
AGACCTGGGCCAAGAAGTGCTTGGGGATGAGATTTCCAGCTGATCTACGACCACCCTCAAGCGTT
CATTGACCAGAATGTAGAGCCTGTTGGGCATGAACCAACGGTGGTTGAAGAAAGAGATAACCCAG
AGAGAGGGTTTTTATTCCACTGCCCACTGCAGATCAAGTGGCTGATCAGAGCTCAGAGACTAGAA
ATGCTGAACACATGGAAAGTACCTCTCACCCCTATTCTCCCCAAGAAAGGGAGAAAAGACCAATT
TAGTCTCCAAAGCCGGTGAGCTTCTAAGCTTTATCTGAACACTTTTTCCTTTTTTGTTGCTCCTT
TTGATCGCTGTTGTTGAATCAGGTTGCTGAAGATGTCCCCTCATCCTCTTCTGAGGCCATTATCC
CTCAAGCTAGTGAGCTCTGACGTCGACCCTTCAATCCTCATCAAC
Found at i:159881 original size:25 final size:25
Alignment explanation
Indices: 159847--159899 Score: 90
Period size: 25 Copynumber: 2.1 Consensus size: 25
159837 AGATCCATCT
159847 CCTATTGAAAGTGAGAATTGG-ATTA
1 CCTATTGAAAGTGAGAA-TGGAATTA
159872 CCTATTGAAAGTGAGAATGGAATTA
1 CCTATTGAAAGTGAGAATGGAATTA
159897 CCT
1 CCT
159900 TAAGCTCACT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 3 0.11
25 24 0.89
ACGTcount: A:0.36, C:0.11, G:0.23, T:0.30
Consensus pattern (25 bp):
CCTATTGAAAGTGAGAATGGAATTA
Left flanking sequence: Indices 159347 -- 159846
TGAACCTGCTAACTACTTGACTGGCTATCTATCTATTATCAGTCTTTCTTTGAGCTTAACCTTCT
CACGACTTACTATCTCTAACCCTACTTCAAGAGCCTAGCTTTCTTACTGCTGCCTTTAGCCTATA
TATATATATATAACTATTATTTTCAAAAACTCTCTTCTCTGTCTACGCTCGTTCCTGCCCTATGA
GAGAAAGAAGGATGGCTTCGAGTAGTGCTGTGATCTGAAGTCGGCGCATTGACAGTGTTCCTTCA
CCAGATGATGTACCCGATTTACGGCACCCGGTTCCTCAGCGTTTTCACCCTCTTCCGACTGAAAA
TCACATCTACTATTAGATTGAGATATAGAATAGATAGAATTCGACATCTCTTTTATACGTTATTA
CTTGGTCGATCTAATTTGTGCTAAAGCCTTCCTTCGGGCTACTATCTCTTTCCTGGTTCGCTACT
TACTTCAACTGGGGCGCTACTCTTTCTTATTTCATAGATCCATCT
Right flanking sequence: Indices 159900 -- 160399
TAAGCTCACTTCCGGATATTAGCTTAGCTACTTACGTAGCCTCGGGTATTCCCGCTGTGGATGGT
AGCCTCGGTTTCCGCTCTATCGATTTTCACTTCATTCCTGGGTTGCTAGAAAACATCCTTCTTCT
TATCGATGTGAGATTGAATCTTGAGCCCCTTTGATTTCCATTTCTCTTCTCCAGGATGAAGACCG
GAATGGATTGATCTGATTGGATTTCTTTTCTGAGCTCGAACCATGATGCTTTCTTCGGTTTACTT
CCACGACATGTATTGGTCAGTCATTGTCATTCCAGACATTCATGACAAAATACATTGGATTTCCG
GGCATCCAAAACGAATAAGGAAGGCGAGGCCTTCTTCCCAGGAAGGGGAATTCCTTTCCTCTTTG
ATCAGAGACCGTTCACTCACTTCGCTCCCTCTAAATTACTATTTTTGTTTGTCTTCCTTCTTGTT
TTACTTTGTCCGCTAAGACCCCCTCCCCTATGTTGATCGAGTAGA
Found at i:167163 original size:15 final size:15
Alignment explanation
Indices: 167143--167173 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
167133 AGGTATCTAT
167143 ATTTAGTCATTCGAA
1 ATTTAGTCATTCGAA
167158 ATTTAGTCATTCGAA
1 ATTTAGTCATTCGAA
167173 A
1 A
167174 GTCTCTTTTA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.39
Consensus pattern (15 bp):
ATTTAGTCATTCGAA
Left flanking sequence: Indices 166643 -- 167142
GGGTCTGGCCCATTCCTCGAAAGAAGTTTTTATGGGATCCCTATCTACCAAAATTTGAACTTCTG
GTTCCGGCGAACGAATAATCATTGAGTCCTCCTCTTTCCGGACAACACATACAAAGAGACCCGCC
AACAGTCAAGAAATTAGTGAACCTATGAGAGATATTTATAATTAGTTTCTTTCTCTTCTCTTATA
TCTCCCATCTATCTATTTTCTTTAGTTATTCACTAGAGCAATTATGATCTGGAAGTCGATCCGGG
CAAGTGTTCGGATCTATTATGACATAGCTTTGAGGCGCTTACTGGACCCGTTTAATATTAGAAAA
CCTTTTCCGGTCTTTGAATTTGAACGCAAAAACGATTTTTTTGTGCAACCTAGTGTATTCATATC
TCAATTAGAAGTTCTTAGATAGAGCTACTTCATGTCTTACATAGAAGGTATTACTATTACTCTCA
CGTGAGCAATCATTAGTCATTACTAAGAGACATCGAGGTATCTAT
Right flanking sequence: Indices 167174 -- 167673
GTCTCTTTTATTAGTAGTAGTTTTATTTTATTAGTAGTAGTTTTAATTACTTTTATTAATAGCAA
TTATTGTTAATAGCAGAAAAGAAATATATTCTCTAATGTATCTGTGTATCGTTTATCCCTACGAG
ATACTAAATGAAATAGAACGATCTTATCTTAGAAGGGATATAATGAAATTCTTTGATTGGTTCTT
CCCATAGGCATAGGAATGATCCATTTTATTTGACTGATAGGTCCAACAAATAATAAGAAATATAA
AAAATTCTAAATAATAAACAGAGTGTTTTTATTCGAAACGCCTCGTGATCTTCAACCAATTATGC
GCTTCAATATAATTACCAGGAGTAAGTGCTATAGCTTGTTTCCAATACTCAGCGGCTTGATCGAA
CCAAGCTTCCGCAATTTCAGAATCTCCCTGGCGAATGGCTTGTTCTCCCCGGTCGGGCGGGTCAA
TTCCTTCCCTTAGAACCGTACTTGAGAGTTTCCTACCTCATACGG
Found at i:167204 original size:20 final size:20
Alignment explanation
Indices: 167179--167218 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
167169 CGAAAGTCTC
167179 TTTTATTAGTAGTAGTTTTA
1 TTTTATTAGTAGTAGTTTTA
167199 TTTTATTAGTAGTAGTTTTA
1 TTTTATTAGTAGTAGTTTTA
167219 ATTACTTTTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.25, C:0.00, G:0.15, T:0.60
Consensus pattern (20 bp):
TTTTATTAGTAGTAGTTTTA
Left flanking sequence: Indices 166679 -- 167178
ATCCCTATCTACCAAAATTTGAACTTCTGGTTCCGGCGAACGAATAATCATTGAGTCCTCCTCTT
TCCGGACAACACATACAAAGAGACCCGCCAACAGTCAAGAAATTAGTGAACCTATGAGAGATATT
TATAATTAGTTTCTTTCTCTTCTCTTATATCTCCCATCTATCTATTTTCTTTAGTTATTCACTAG
AGCAATTATGATCTGGAAGTCGATCCGGGCAAGTGTTCGGATCTATTATGACATAGCTTTGAGGC
GCTTACTGGACCCGTTTAATATTAGAAAACCTTTTCCGGTCTTTGAATTTGAACGCAAAAACGAT
TTTTTTGTGCAACCTAGTGTATTCATATCTCAATTAGAAGTTCTTAGATAGAGCTACTTCATGTC
TTACATAGAAGGTATTACTATTACTCTCACGTGAGCAATCATTAGTCATTACTAAGAGACATCGA
GGTATCTATATTTAGTCATTCGAAATTTAGTCATTCGAAAGTCTC
Right flanking sequence: Indices 167219 -- 167718
ATTACTTTTATTAATAGCAATTATTGTTAATAGCAGAAAAGAAATATATTCTCTAATGTATCTGT
GTATCGTTTATCCCTACGAGATACTAAATGAAATAGAACGATCTTATCTTAGAAGGGATATAATG
AAATTCTTTGATTGGTTCTTCCCATAGGCATAGGAATGATCCATTTTATTTGACTGATAGGTCCA
ACAAATAATAAGAAATATAAAAAATTCTAAATAATAAACAGAGTGTTTTTATTCGAAACGCCTCG
TGATCTTCAACCAATTATGCGCTTCAATATAATTACCAGGAGTAAGTGCTATAGCTTGTTTCCAA
TACTCAGCGGCTTGATCGAACCAAGCTTCCGCAATTTCAGAATCTCCCTGGCGAATGGCTTGTTC
TCCCCGGTCGGGCGGGTCAATTCCTTCCCTTAGAACCGTACTTGAGAGTTTCCTACCTCATACGG
CTCAGCAGTCATTTATTTTGGTGTCCCGTTTTAATCTACCATATC
Found at i:177337 original size:14 final size:14
Alignment explanation
Indices: 177296--177337 Score: 59
Period size: 14 Copynumber: 3.0 Consensus size: 14
177286 AAAATTAGAT
177296 TATCTATAATTATA
1 TATCTATAATTATA
*
177310 TATATAT-ATCTATA
1 TATCTATAAT-TATA
177324 TATCTATAATTATA
1 TATCTATAATTATA
177338 ATTTAGTAAG
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
13 2 0.08
14 20 0.83
15 2 0.08
ACGTcount: A:0.43, C:0.07, G:0.00, T:0.50
Consensus pattern (14 bp):
TATCTATAATTATA
Left flanking sequence: Indices 176796 -- 177295
GATTGATTCAGGGCGCAGCGAAGCCAAATTAAATCAAGGCAAGGGCTTTTCCTGACGCTGAGTCA
TCCTATTCAAATTTAGCTATGCTAATGGAACAGGAAAAGTTTTCAGATGATATGGACCCCTGAGC
GAGAACTGAACATTGCTTAGGGGTCGCACTCTGTCCCGCTTGGTGGACGAAAGATTCTCTCCTTT
TATCATTCTTTCTCCCACACACCTTTGCCCTCTTTCACCGAAGAGGAAAGAAGAATCTTCCAAGC
GGACAGAGACCTAATAAATTTCCATTAGATTCATTCCTAAGCTTGCTTTGTTGCAGCAAGATGAT
CAGTCCGAGAGTGCTGGAGAGAAGAGAAAGCGGTAAAAACCTCTCTGATTCGGTCACCGAGCAGT
CGGACGACTCTTCAGTAACCCAGGATGACCCCTTCGACGCTTCTTTCGCTGTATACCCCCTCCAT
CCTTCGGAGGTGGAAGAAGGGGTACTCTTAGATATAAAATTAGAT
Right flanking sequence: Indices 177338 -- 177837
ATTTAGTAAGTAGGGCCCCAGAACGCTAAAAAGGTGGGGGAACAAGAGTTGTCACGATAGAAAAG
AGAAATGACTATAAGGAACCAACGATTCTCTCTTCTTAAACAACCTATATCCTCCACACTGAATC
AGCATTTGATAGATTATCCAACCCCGAGCAATCTTAGTTATTGGTGGGGGTTCGGTTCGTTAGCT
GGTATTTGTTTAGTCATTCAGATAGTCACTGGCGTTTTTTTAGCTATGCATCACACACCTCATGT
GGATTTAGCTTTCAACAGCGTAGAACACGTTATGAGAGATGTTGAAGGGGGCTGGTTGCTCCGTT
ATATGCATGCTAATGGGGCAAGTATGTTTCTCATTGTGGTTCACCTTCATATTTTTCGTGGTCTA
TATCATGCGAGTTATAGCAGTCCTAGGGAATTTGTTCGGTGTCTCGGAGTTGTAATCTTCCTATT
AATGATTGTGACAGCTTTTACAGGATACGTACCACCTTGGGGTCA
Found at i:197833 original size:35 final size:35
Alignment explanation
Indices: 197791--197896 Score: 180
Period size: 35 Copynumber: 3.1 Consensus size: 35
197781 TCTCCTAGAG
197791 CACTTCTGATCAAAGATCAGCCTTCTCGTTCCGAC
1 CACTTCTGATCAAAGATCAGCCTTCTCGTTCCGAC
* *
197826 CACTTCTGATCAAAGATCAGCCCTCTCG-T-AGAC
1 CACTTCTGATCAAAGATCAGCCTTCTCGTTCCGAC
197859 CACTTCTGATCAAAGATCAGCCTTCTCGTTCCGAC
1 CACTTCTGATCAAAGATCAGCCTTCTCGTTCCGAC
197894 CAC
1 CAC
197897 CCTGACTTTC
Statistics
Matches: 65, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
33 30 0.46
34 2 0.03
35 33 0.51
ACGTcount: A:0.25, C:0.35, G:0.14, T:0.26
Consensus pattern (35 bp):
CACTTCTGATCAAAGATCAGCCTTCTCGTTCCGAC
Left flanking sequence: Indices 197291 -- 197790
TTTCAATGGAGAAAGGGGAAAAGGGATTGGCTTTCTATTACGGTTCTTCCTTTTGCCCTGGTTAT
TAAATAGGCGATTATGATTCCATACATCATTCTTACTAGTTAGTTGAGGGCAAAGTGACTAGCGG
GCCTACGATCAGACCTAATCAAAAACTATACGCGGACCTACTCGCTCTCTTAGAAGCTGTCTTTG
ATTAAAGCTCACTTGGAACGTCGCTCGTTTGGAACCCTGTCCCTCTGAAACTCACTTTGCATCTT
GGATGACAGGGCCCCTGGTGCCAGCGGTCGGCACCCAACGGAGCTTTAGTATTCTATTAGTAGCT
GGGCCGTCAAAAGCAAGGTTGGTCGTAGATCAGCTGCGCTGATGACGATGCTATCATAAGAAAGG
ACCAGGCTGTCCCCGGGAAGATTGAGCGGGTCCTAAGAGATTTTGAGGATGTCATGCCTGCCTAA
GATCGTAGTAGAGCACCCTGATTTACAATCAGCCCTCTCCTAGAG
Right flanking sequence: Indices 197897 -- 198396
CCTGACTTTCCTAATTTCATAAACGAACTCAACTGTCTCGAGTGAAGGAACTAATGCCAGCTTCT
TGTACTCTTCGTGATAGTTAGCCCGCCCCTCTGAGTTCGAGTTGAGGAGTGAGCTCTAGTTCCTT
GTCTTACTCACTCGATAGTCGTAGCTGCTATCCCAATAGTTGTAGCTTGCTTCTCTTATGTTGAG
AGCAAGGTCTTCCTCATCTTACTAAAGGTAAGTAATACATTGTCTTTAATCCACTTAAGAGTCAT
CTATTTGCGCTTGTCTTTCCTTCTTTCCTTCCTTCTTCTAGTCCCTTTAAGAGATAGGGCAACTC
AAGAACGTCTATTAAAGCATAGCTCTTCAAACTCTTATTCGCTTTCATACGCTTCTTGATTGAGC
AATGCATCTCGCATTGTGATAACTTACTTTGATAACTGAAAAACGGTAAGGGGAAGGAACTCTTC
TAGAGTCGAGTAATTAATAGTGGCGTAGGCATTCCGGCCTTTAAC
Found at i:197886 original size:33 final size:33
Alignment explanation
Indices: 197773--197887 Score: 167
Period size: 33 Copynumber: 3.4 Consensus size: 33
197763 CTGATTTACA
* *
197773 ATCAGCCCTCTCCTAGAGCACTTCTGATCAAAG
1 ATCAGCCCTCTCGTAGACCACTTCTGATCAAAG
* *
197806 ATCAGCCTTCTCGTTCCGACCACTTCTGATCAAAG
1 ATCAGCCCTCTCG-T-AGACCACTTCTGATCAAAG
197841 ATCAGCCCTCTCGTAGACCACTTCTGATCAAAG
1 ATCAGCCCTCTCGTAGACCACTTCTGATCAAAG
*
197874 ATCAGCCTTCTCGT
1 ATCAGCCCTCTCGT
197888 TCCGACCACC
Statistics
Matches: 73, Mismatches: 7, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
33 42 0.58
34 2 0.03
35 29 0.40
ACGTcount: A:0.24, C:0.34, G:0.15, T:0.27
Consensus pattern (33 bp):
ATCAGCCCTCTCGTAGACCACTTCTGATCAAAG
Left flanking sequence: Indices 197273 -- 197772
GGAGGTCAGGAAGAAAGCTTTCAATGGAGAAAGGGGAAAAGGGATTGGCTTTCTATTACGGTTCT
TCCTTTTGCCCTGGTTATTAAATAGGCGATTATGATTCCATACATCATTCTTACTAGTTAGTTGA
GGGCAAAGTGACTAGCGGGCCTACGATCAGACCTAATCAAAAACTATACGCGGACCTACTCGCTC
TCTTAGAAGCTGTCTTTGATTAAAGCTCACTTGGAACGTCGCTCGTTTGGAACCCTGTCCCTCTG
AAACTCACTTTGCATCTTGGATGACAGGGCCCCTGGTGCCAGCGGTCGGCACCCAACGGAGCTTT
AGTATTCTATTAGTAGCTGGGCCGTCAAAAGCAAGGTTGGTCGTAGATCAGCTGCGCTGATGACG
ATGCTATCATAAGAAAGGACCAGGCTGTCCCCGGGAAGATTGAGCGGGTCCTAAGAGATTTTGAG
GATGTCATGCCTGCCTAAGATCGTAGTAGAGCACCCTGATTTACA
Right flanking sequence: Indices 197888 -- 198387
TCCGACCACCCTGACTTTCCTAATTTCATAAACGAACTCAACTGTCTCGAGTGAAGGAACTAATG
CCAGCTTCTTGTACTCTTCGTGATAGTTAGCCCGCCCCTCTGAGTTCGAGTTGAGGAGTGAGCTC
TAGTTCCTTGTCTTACTCACTCGATAGTCGTAGCTGCTATCCCAATAGTTGTAGCTTGCTTCTCT
TATGTTGAGAGCAAGGTCTTCCTCATCTTACTAAAGGTAAGTAATACATTGTCTTTAATCCACTT
AAGAGTCATCTATTTGCGCTTGTCTTTCCTTCTTTCCTTCCTTCTTCTAGTCCCTTTAAGAGATA
GGGCAACTCAAGAACGTCTATTAAAGCATAGCTCTTCAAACTCTTATTCGCTTTCATACGCTTCT
TGATTGAGCAATGCATCTCGCATTGTGATAACTTACTTTGATAACTGAAAAACGGTAAGGGGAAG
GAACTCTTCTAGAGTCGAGTAATTAATAGTGGCGTAGGCATTCCG
Found at i:213025 original size:27 final size:27
Alignment explanation
Indices: 212994--213048 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
212984 GTACTTGTGG
212994 CTAGTCCTCTTATATGGACTTGACCTC
1 CTAGTCCTCTTATATGGACTTGACCTC
213021 CTAGTCCTCTTATATGGACTTGACCTC
1 CTAGTCCTCTTATATGGACTTGACCTC
213048 C
1 C
213049 CTAAGGATGC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.18, C:0.31, G:0.15, T:0.36
Consensus pattern (27 bp):
CTAGTCCTCTTATATGGACTTGACCTC
Left flanking sequence: Indices 212494 -- 212993
CTATCTCGAAGGGAGCAGAGCTTTAAGCCAAGATTGGTATTGATAAAGAATTTCTGTCCAGAAGC
GTGTAACACAAGATTATTTCACAACGACGAAGCAAGCAGAAAGAAGATTATACTTCCCATTTGGG
CTAGTCCGCCTACGCATGTTATGACATTTCCACGAACCATCACGAATGGCGAATGAGAAGAGGAA
CCCCGGCACTTGAGATGGGTGCTTTCCTTCTTTTTTCTTTCGAAGGTGTTCAAGGGCTGATTGAG
GTATTAATTCAATACATATAATTTCCATTTTTCTTGATTTGGTGGTAACCCATTTGGACGAGCAA
TCGCTACTTCGTTCTCGCCTTTGAGTGTGCAGGGCTTGAATCATCCATAAAACGCCTATTCCTAG
GTGCCAAGCTTGTGTGAAATATCTTACTTGCCTTATTCCCGGAAGTGGGTTAAAATCCCACAATT
AAATAATAATTGCAAAGATTTTAGATATTGTCTCAGTACTTGTGG
Right flanking sequence: Indices 213049 -- 213548
CTAAGGATGCTTCCACAGAAGAGGCGAGAGGTTCTATCCTTCGATAGGAAAAGCTATGTGTACCG
AACGGGAAATCTATACTCGTAGGCGGTGATACCTCAAGCCCATGATACAACATTTTGAAGTAAGA
AAGCAGTTGATAACGAGAAGGTAACCCCCGGTCGGACTTGGTAGGGTAGAAGCCGAATAGAAGGC
ATAAAGTCAGAGGAATGAGCGGGTAAAGAATAAAGAGATTGGAAAGATGAGATTCATGTATTGAC
GTAATATAGTAGACCCTTAAAGAACATCCAAACCTAGAAACGAGAGCACGCCCATCAAACTGAAA
GAATTGAGAAAGAAGAGGCGGGCTAAGCCCGAATAGCTTCCTCAAAAGCATGATGTAGCGACTTA
CTATGAATAATGCGAGCTAGCATTTGGGGCTAATGTCTGTAGATGTGATACCTCCTGGTCAGAGA
CGGAGAATCGCTGTTATCGGATCTGGTAATAAACGTATGCTTAGT
Found at i:228358 original size:15 final size:15
Alignment explanation
Indices: 228313--228373 Score: 58
Period size: 15 Copynumber: 4.3 Consensus size: 15
228303 GAAGAACGGA
*
228313 TAGAAAGATAGTAGG
1 TAGAGAGATAGTAGG
*
228328 TAGAGCGAT--T-GG
1 TAGAGAGATAGTAGG
*
228340 TAGAGAGATAGTGGG
1 TAGAGAGATAGTAGG
228355 TAGATG-GATAGTAGG
1 TAGA-GAGATAGTAGG
228370 TAGA
1 TAGA
228374 AGGATTAGAC
Statistics
Matches: 38, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
12 10 0.26
13 1 0.03
14 1 0.03
15 25 0.66
16 1 0.03
ACGTcount: A:0.36, C:0.02, G:0.39, T:0.23
Consensus pattern (15 bp):
TAGAGAGATAGTAGG
Left flanking sequence: Indices 227813 -- 228312
ATAAAAAAATGTCCGGTTAGGATATGTGGGGAAGAAGCTCCTAGCATATCTAAGGATGACTTTCG
TTTCATATTCCAGTCTTGCAAGATCCGAATAGGATTTCAAGGCTATGAATGTCGAATGGTCCCAT
ATGCGCTTTCGCCCGCCCCTGAATAAGCAGTAAGGCGTGGGCGCGTTGGAACGATCCCGCTTTGA
AAGCTCAACCTCGGGAGAATCATAACTCCGCTACCAACAGAAAGCGGGATCTCGACCAGTCCGGA
ATCTGATCACCTGGGCGGTGACTAACCCAGGCATTTGAACTTGACTCCCGCTTAAACGAGAAAAA
AAAAAGCCCTATGCTACAGACTCGGGACAGAAAGATTCGTATTGAATGAATGCACCGTTACTTCC
TTTCGAGATCTTTTAATGAATGGTCGGAGATGCAGCCGGTCAGGAGGAGGGGGCCCACGTGCAGC
TTTTGGCGCACCCCTATCACGTAAGGGGAGGATAGGAAGAACGGA
Right flanking sequence: Indices 228374 -- 228873
AGGATTAGACTTGACTTACCTCCATAGTGACTTCAGATTATACTGACCTTTGACTTACCTAATCA
CAATGAAGAAGCAGCTACGGATAGACAAAGAGCTTACTTATAGGGGAGGGGAGGGGACTGAAGCA
CTCGACTATCAAAGCCTGCGTAGAAAACAGAAGTGCGCTCAGCAAGAAAACGGCTGCGCGTTAGC
GCTTTTGTTCAATTATAAATAAAGAACCACCTTTGATGGAGATTTGTAGCATCATTCAAGTAAAT
ACAGATTGAGATCGTAGAAACATGAGCTTGTGATATAGCTACACCTAATTCCGGACCGGTTAATG
CAAGAACTATAAAAAAAGGACCAGGATCCCCTATGAAATATAAAAGATCATTCATACATAGCATA
GTCCAAGCGAACCCACTTAAAATCTTTACTGAACTATGACCGGCCATCATATTAGCAAATAAACG
TATTCCTGAGCTTAATGCGCGAAAACAATGAGGGATTAGCTCAAG
Found at i:265925 original size:27 final size:26
Alignment explanation
Indices: 265886--265940 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
265876 TCAGAAAATC
*
265886 TCTCTCGCCCTCTTGTCGCTATGTCTT
1 TCTCTCGCCCTCTCGTCGCTATGT-TT
** *
265913 TCTCTCGTGCTCTCGTCGCTCTGTTT
1 TCTCTCGCCCTCTCGTCGCTATGTTT
265939 TC
1 TC
265941 AGTCTTTATG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.02, C:0.36, G:0.16, T:0.45
Consensus pattern (26 bp):
TCTCTCGCCCTCTCGTCGCTATGTTT
Left flanking sequence: Indices 265386 -- 265885
CCTTAACTCCTAAGCTTTGAAACCTGTCCAATCCCATGTCTTAAGCTAAGCGATTAACCTTTATA
AAGTGCTACGAATCGATTCACTCGTCTATTAGTAATAAATCCAATTCGAACAGAAAGACCCCTAC
CGGACCGGAGGTTGCCCGGGCGGATGAGAAGATCTGATGTCAAAGACGAGTTTGATTAGAATTCC
AACTCTGAACGAAGGACCAAGTATGATTTTGCATAAGACCATTGTACTCCTCGGTCATGGCTTGA
GGCCTGTGAGGGGACTTGGCAGCCTCAGTATAGCTGGTTGGTTCAGAGGGAGAAGCAGAGGTAGG
AAGTTAAATATAACGCGGTTCATAGCTTTAGTAGCTGTAGTGAGAGTAGTCGATCTTGGAGGAGG
AGTAGGTCTTGGCCTTGGCAAGCTGCCCTTCCTTCTTGCGGTAAGTCAAGAATGAATGCCGTCCC
TCTGCTTTCTTAGTATATCTGTCGCTCACTGAAGATCAGAAAATC
Right flanking sequence: Indices 265941 -- 266440
AGTCTTTATGTCCATCCTTTTTGCCTGAAAAATTAAGTAACTCAAACCATATAATAAAGAGAGAG
GCTTACCCTACCTGTCGTCTTGGAGAGGGCGGTAGGGAAGTCACTCGAGAGCAGAGGCTTTGTTG
AGAGAATAGGGGCGATAGCGGTAAGAACTGGTTCAGAAAGTGGGCAGGACTTTTCCCTATTTTTT
TTTTTAAGGGATGGATGAATTTAGATAGTGATGATGGTAGAGTTTGAACTTTTCCCAACTAATGC
GAGGAAAGGAACTGAACTACTATTCTCTAGGAAGATCTTGACTAAGAAAATTCAGATAGAGAGTC
TAGGGTTGGTTGTACATGCGACTGATCTAAGGCACTCTCGGAGTTAGAAGTCTTTTAAGAAGCAG
TAGACTGAGAGGCTTTGGCAGAATGGATCATACTTTTTGCTCTCAGGGTGCTTTCCTTGAGCTCC
ACCATCCGGGATGCTAGTTTTTTGAGGATGATTCTTTCGTGTAAG
Found at i:267460 original size:18 final size:18
Alignment explanation
Indices: 267409--267461 Score: 52
Period size: 22 Copynumber: 2.7 Consensus size: 18
267399 TCTTATATTT
* *
267409 TATATTTCTTTAAAAATA
1 TATATTTATATAAAAATA
267427 TATATTTATTATTATAAAAATA
1 TATA--T-TTA-TATAAAAATA
267449 TATATTTATATAA
1 TATATTTATATAA
267462 TTTTCTTTCC
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
18 9 0.31
19 3 0.10
20 2 0.07
21 2 0.07
22 13 0.45
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (18 bp):
TATATTTATATAAAAATA
Left flanking sequence: Indices 266909 -- 267408
AGGTTGCCACTCGGTTCTGTATAACGAGCAGAAGGTGAAGGCATCAGCCTATCTATAGAAGTCGA
ACACACTTTGGGTGGAAGGCATGGAGAAAAAGGTGCTTTAGGAGCTATGATACGCTCCGGCACCT
TAATCTAAGGATGCGGTACAATATTTCCGGATGCAGGCTTACGAATAGAAGCCGATTGAGATTAA
ATCGAACTCGCCAATGAACCACCAAATATGACCATCCTGAAAAACTCTTAAACATGAACTTTTGA
AGCCACAGGGAGTGCACTTGCTTGTTCCCTGCACTTATCTTTCAAAGTTTAAATAAAAGAGAAAG
AGAGTAGGTGGAATGAGATCCGACCACCTACCCCAGGATCTTTGCGGGTTTTTTTACCCGGCGAA
CGGAGTGGGAGTTTGTTTTGCCTATTTACTTGATTGAGAGTGAGTAGTAACTTAAACGGGATAAA
TATGGAAAGACTCAATTAATGAAGAAGAAATTCCCTCTTATATTT
Right flanking sequence: Indices 267462 -- 267961
TTTTCTTTCCCATCTTTAAGAGAAAGCTCTTACTGTTATTCTCGAACTCAGAGCCGGGTGAAGAC
CGCACAAGTAAGACCAGACTTTAAGAGATTTTGACCGATATGATTAGAAATTCTTAGGAGCGAAT
GGGCAGCGCTCGCTTGGCACACTGATGAGATTTCCCCTTGGACAGATAGCCTTTCTTTATTTACT
ACCACCGGCTGGAGACCATATTGCTACCAGAGAGAGGAATGACTATAGGCACGAAACTGGCTTTT
AACCCTTTCTTTGCAAGCGTGTGCTGTGCTACTGGCTCGATGGACAAAGTCTCGCGAAAAATCCG
TATAATGATTAGCTCCTAGCCCCTGCTTCTATCATTGGTGCTATTATCGTATAATATAATGGATC
ACTCCTGCAGGACTTCTTTCTATCAATTTAATAATTGCAGGTATAAAAGAAAGGGATGGATGGCC
GGGCCATGAGAAGGAAGACTTTTCTTTTTATTTTCACATGCAAGT
Found at i:271625 original size:15 final size:15
Alignment explanation
Indices: 271605--271634 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
271595 ATTTCTATTC
271605 TGAAATGTTCATGCA
1 TGAAATGTTCATGCA
271620 TGAAATGTTCATGCA
1 TGAAATGTTCATGCA
271635 GTAAGGGTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.20, T:0.33
Consensus pattern (15 bp):
TGAAATGTTCATGCA
Left flanking sequence: Indices 271105 -- 271604
CGATACTATAGTTCCAATTATTCCTATGATTGGATCGTTGGCTAAAGCGAGATTTTGTAATGCCT
TAGGGCATCCCATTAGTAAGCCGTCCTGGGCCGATTCATCAGATTATGATATTATCGACCGATTT
GTGCGTATATGCAGAAATATTTCTCATTATCACAGTGGATCCTCAAAAAAAAAGAATTTGTATCG
AATCAAATATATACTTCGACTTTCTTGTGCTCGAACTTTGGCTCGTAAACACAAAAGTACTGTAC
GTGCTTTTTTGAAAAGATTAGGGTCGGAATTTTTGGAAGAATTCCTTACAGAGGAAGAACAAGCT
CTTTCTTTAATCTTACCAAGAGTTTCTTCTACTTCGCGAAGCTTATATAGGGGACGTTTTTGGTA
TTTTGATATTATTTGTATCAATGATCTAGCCAATCATGAATAATTGGTTATGAAACCATGTAAAT
ATAAATTATCCCTAAATGATAAAAAAAATGAATTCATTTCTATTC
Right flanking sequence: Indices 271635 -- 272134
GTAAGGGTTGAATTAACTGAGTAATCAACTTTCTTAGAGTCACGTCTAGGGGAGGAACTGGGTTT
TAGATGTATACATAGGGAAAGCCTGGTGCAATCATAAAAGCAAGCACGGCTTGGGGAGGGATTTT
TTACCTTTTTTTTTTTAACAAGGAAATTATCTACTCTATCCGACTAGTTCCGGGTTCGAGTCCCG
GGCAACCCATTATCATATCGAAATCATGTGTATATAAATCCGTATTATCTTTTTGTAACTTACTT
TATTCATTCATCAATAAATTATGATGGATCTAGATAGATAATAGATATATCTGTGGATGTTGATA
TTGGTTGACACAGGCATATAAGTCATGTTATACTGTTGAATAACAAGCCTTCAATTATCTATTTC
TATTTTTAGATAATTCGTGTGCTTGGGAGTCCCTGATGATTAAATAAACCAAGATTTTACCATGA
CTGTAATTTTAGAGAGACGCGAAAGCGAAAGCCTATGGGGTCGCT
Found at i:286189 original size:24 final size:24
Alignment explanation
Indices: 286162--286219 Score: 107
Period size: 24 Copynumber: 2.4 Consensus size: 24
286152 TGCGGGTACA
286162 GGACAAGAGAATGAAAAGCGGAGG
1 GGACAAGAGAATGAAAAGCGGAGG
*
286186 GGACAAGAGAATGAAAAGCGGGGG
1 GGACAAGAGAATGAAAAGCGGAGG
286210 GGACAAGAGA
1 GGACAAGAGA
286220 TTCGAAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.45, C:0.09, G:0.43, T:0.03
Consensus pattern (24 bp):
GGACAAGAGAATGAAAAGCGGAGG
Left flanking sequence: Indices 285662 -- 286161
GTTCAGCTAACGAAACTCGAACAATAAATTCAAGACTTTTCTTAAGGGTGGTCGTAGAGAAGGCA
GATCGAAGATCAGAAGTGGTCGTAGATCAGCTTGCAGAGTTTTCTTTATCCGGCTGGGAGTTTAC
TATGCTCTTTCCCTTGCCTGTGGGACTGCTGCTGCCTGCCCTGCTTCCCATGCACCTACTTCTCA
TGCACTGACCCGGGGCCCCCTCTGGGGTTCTAAAGTTGGGAAGTTCCTGTGGGGAAAAAGGAAGA
GAATTATGACTGGAAACATTGCGTTGAACGTAACTAGGCATTCTATACACTAATGCAGCTCCTTA
CCTTAAGCCGTTTCGCCCCTTTCTCAACAAGCTGTGATAAAGGGAAAATCTCTTCCTTATACAAT
GCCCCAAGGAGACTACTACCCAAGGTTTTTTTCCAGCCTAAAAGCCACTTTTGTGTCAGCCCTCT
TCCCTCGTTAGCAGCCAAACTGAAAAGCCTACTCTTGCGGGTACA
Right flanking sequence: Indices 286220 -- 286719
TTCGAAATTTCTTTAGTAGTATAGGATAGGGTTCAGGCTACTGGACAATCTTCCTCAGATTGAAA
TGAAAATAAAGAAAAAAGAGTGAAGCCTAGCACCGCTCCAGCTCCTGCACCAGCTTCTACTCGAT
TCTAATTTCCGCCCTAATATAATAGGTTGACTTTGACTTTTTGAATCCAATAAAGAGCCTCTCTT
TCATTCCCAATCGACCGAGCGCTCCGAAGGGCATTGCTTACGCGCTTCAATCCATATAGCTTTGT
ATCTCAGAAAGTAGGGTTGATGTCTCCCTTACTGCATTGGTTAGATATGAGCATCCGACTCTTGC
TGTCTTGACTTCTTGATAACTGTGTATTCAAATACCAATATCACACATACCCTGGAGACTGTTCC
CACTCTGAGATACCAGCCTAAGCCTAGGTCAAGAGGGCGTTAAGCACCTCACTATACCGATCATG
GCTTCTGCACCTAAACACATCCCTTCTCTTAGGGCTTAGGTAGGG
Found at i:312943 original size:19 final size:19
Alignment explanation
Indices: 312919--312968 Score: 100
Period size: 19 Copynumber: 2.6 Consensus size: 19
312909 GTTTAGTTCT
312919 TGAGTTCGAGCGTTGAAAG
1 TGAGTTCGAGCGTTGAAAG
312938 TGAGTTCGAGCGTTGAAAG
1 TGAGTTCGAGCGTTGAAAG
312957 TGAGTTCGAGCG
1 TGAGTTCGAGCG
312969 GGGGTAGCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.24, C:0.12, G:0.38, T:0.26
Consensus pattern (19 bp):
TGAGTTCGAGCGTTGAAAG
Left flanking sequence: Indices 312419 -- 312918
CTCTCCTTCTGGTAATGCATTATAGGCTGTCTTCCTTCCACCTCTCTCTATCGCCCTTCCTTCTT
TTAGCAGCTCATCTCGAATCTTGAATGTTTAGCGAATCGATCGTAATTGGTCTGACCGCTCAAGG
CTTATCTCTCTATTCCCCTTTCTGGTCTCCGGTCATTGGTAGAAAGCCTGTAAATGGAATTTATC
TACTCTCCCACCTCTCCAGCTTGGGAATACTTCTTGATATTGGCTATATATCTGTAGTCACAATG
CCAGTTCAAGCTATCTTCTGGATAGAGCAAGAAAAAGTATGCGCAAGTGCAGTAGTTCAAGGCAG
GCAGGTAAGGGCAGGTAGTAAAGGCAAGCGCATAGGCAGGGGATAGGCATTCAAATCACGATCTT
CAAATAGCAGCGTATATAAGAGAAAGAGTGGCTCGTGCATCTTTTCTTCTTTTAGATAGGCAAGG
GAAGCAAGCATGAGCGGGAATGAGCAATGACTTGAGTTTAGTTCT
Right flanking sequence: Indices 312969 -- 313468
GGGGTAGCATTCCGGTCTTAAGCAAAGCCGTCCTGCCCGGCCATATGTCCTGTTCAGTCAGTTGC
ATATCGGTAAGCATGATTGTAGCAATACAAATAGGCGCGGTAGACGAAGGAGCTGTTTTCAACAA
ATCAATATTATGGTGGGTGCCTGGTGAATCCACACGATTCAGCCTCAGAATGCCCTTCGTGCCTA
AAAGGTTAGTTCAAGGGCTTTGATAGGGAAATGCACACACTTGTTGTCGTTTCAGATGCGATCAA
AAAGCTTTTTTTCAAGCGTAGAGACTACATATGAGGAAGATGCGAATAGAGATGCGGAAGTTCCT
GTTGGAGTTGGAGGTGCAGGAGCAGTGAACATGACTCTTGCAGAAGGAAGAAATGCGGTAAAGAG
GAGTTCCAGGCGTAGGAGTTCATTCAACTATAATAGGAGAAGCAGGTGCAAAAGTAGTAGCAGTA
GCACGCGCTTCCCTAGTAGCAGGAAAGGAGGATAGAATTAGTGCC
Found at i:316352 original size:17 final size:17
Alignment explanation
Indices: 316330--316385 Score: 62
Period size: 17 Copynumber: 3.4 Consensus size: 17
316320 TCGGAAAGGC
316330 CTGATCTACGACCACTT
1 CTGATCTACGACCACTT
* * *
316347 CTGATCAAAGATCAGC--
1 CTGATCTACGACCA-CTT
316363 CTGATCTACGACCACTT
1 CTGATCTACGACCACTT
316380 CTGATC
1 CTGATC
316386 AAAGATCAGC
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
15 1 0.03
16 11 0.37
17 17 0.57
18 1 0.03
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27
Consensus pattern (17 bp):
CTGATCTACGACCACTT
Left flanking sequence: Indices 315830 -- 316329
TACGATCAGAGACAACCCGCTCTTGGACTTAAGACTATGCGCGTCGCGTGCTCGATCTAGCAATC
TTGGACAATTGTTTTGATGAACTGTCACGAAACTCAAAAATAAAGAAGAGAAAGAACTGGGAGTT
GGCGCCTACATAACTGGTTGCTTGCTTACCAAGCCATCCTGGCAAGCTCCTCCAGTTTGATTCTT
ATTCTTGACTTGACTTATTATTATAAAAACTACTCACTAAAAAAATGAAAGACGATCTATTATCT
ACCCAAGAAGATAGAGAGTCCCACATACGATAAAAGGTCACAAATAGAGTTGAACCAAGTAACAT
TGCAAAGGCATAATGATAGTAGGGTCGGGATATCCCCGCCCTCCGAACCGGACGTGAAGGTCTCC
CCTCATCCGGCTCTCTGCAGGGGAATCTCCACTCACTGCTTCCCCTAATATCCTCCCTTTACCAC
ATCATGGGGGTTTACAGGAGATCCCAGAGGCTCGCTCGGAAAGGC
Right flanking sequence: Indices 316386 -- 316885
AAAGATCAGCCTGATCTACGACCACCCTTTGACTCAACTCTACTCTAGTAGTCACTAGACTCACT
ATAGTAGTCCGTCCGGCTGCTCTTGCTGAAATCATTACTCTTCATTCTCCCGTGCTCTAGCAATT
GCGCTCCCTAGACCACTACCATGTAGTTAGGTAGGGACAATCAATCCGTAGTGACGGGAATCTAG
GAATGAATGGGGATCCCTATCAATATAAAAATGAAGAATATATAATTAGACTTTTCTCCCTTTCT
CTCACTCAATAGATGTATCTGGTCTGATACGGTACAGTACAATACGAGACGATGAAATGCAATGG
GATGGATGGTGGAGGGCTGCCTGCGCCCAAAAGCGATGATTCACTTGTCCCCTTGTCCATAGGGA
CCTCGTGGCATACAACCGAAACGACTCCCGCTAGATAGCCGCCCCTTTCTCTCTTTTTACAGCCT
CGTGGACGGACGAAAGAAGGGAAGTTACAGAACGGGGCAGTGAAG
Found at i:316365 original size:33 final size:33
Alignment explanation
Indices: 316328--316410 Score: 166
Period size: 33 Copynumber: 2.5 Consensus size: 33
316318 GCTCGGAAAG
316328 GCCTGATCTACGACCACTTCTGATCAAAGATCA
1 GCCTGATCTACGACCACTTCTGATCAAAGATCA
316361 GCCTGATCTACGACCACTTCTGATCAAAGATCA
1 GCCTGATCTACGACCACTTCTGATCAAAGATCA
316394 GCCTGATCTACGACCAC
1 GCCTGATCTACGACCAC
316411 CCTTTGACTC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 50 1.00
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.23
Consensus pattern (33 bp):
GCCTGATCTACGACCACTTCTGATCAAAGATCA
Left flanking sequence: Indices 315828 -- 316327
TCTACGATCAGAGACAACCCGCTCTTGGACTTAAGACTATGCGCGTCGCGTGCTCGATCTAGCAA
TCTTGGACAATTGTTTTGATGAACTGTCACGAAACTCAAAAATAAAGAAGAGAAAGAACTGGGAG
TTGGCGCCTACATAACTGGTTGCTTGCTTACCAAGCCATCCTGGCAAGCTCCTCCAGTTTGATTC
TTATTCTTGACTTGACTTATTATTATAAAAACTACTCACTAAAAAAATGAAAGACGATCTATTAT
CTACCCAAGAAGATAGAGAGTCCCACATACGATAAAAGGTCACAAATAGAGTTGAACCAAGTAAC
ATTGCAAAGGCATAATGATAGTAGGGTCGGGATATCCCCGCCCTCCGAACCGGACGTGAAGGTCT
CCCCTCATCCGGCTCTCTGCAGGGGAATCTCCACTCACTGCTTCCCCTAATATCCTCCCTTTACC
ACATCATGGGGGTTTACAGGAGATCCCAGAGGCTCGCTCGGAAAG
Right flanking sequence: Indices 316411 -- 316910
CCTTTGACTCAACTCTACTCTAGTAGTCACTAGACTCACTATAGTAGTCCGTCCGGCTGCTCTTG
CTGAAATCATTACTCTTCATTCTCCCGTGCTCTAGCAATTGCGCTCCCTAGACCACTACCATGTA
GTTAGGTAGGGACAATCAATCCGTAGTGACGGGAATCTAGGAATGAATGGGGATCCCTATCAATA
TAAAAATGAAGAATATATAATTAGACTTTTCTCCCTTTCTCTCACTCAATAGATGTATCTGGTCT
GATACGGTACAGTACAATACGAGACGATGAAATGCAATGGGATGGATGGTGGAGGGCTGCCTGCG
CCCAAAAGCGATGATTCACTTGTCCCCTTGTCCATAGGGACCTCGTGGCATACAACCGAAACGAC
TCCCGCTAGATAGCCGCCCCTTTCTCTCTTTTTACAGCCTCGTGGACGGACGAAAGAAGGGAAGT
TACAGAACGGGGCAGTGAAGGCTCGCGAAGTAGACAGCAAGCAAC
Found at i:316368 original size:16 final size:16
Alignment explanation
Indices: 316347--316401 Score: 58
Period size: 16 Copynumber: 3.4 Consensus size: 16
316337 ACGACCACTT
316347 CTGATCAAAGATCAGC
1 CTGATCAAAGATCAGC
* * *
316363 CTGATCTACGACCA-C
1 CTGATCAAAGATCAGC
316378 TTCTGATCAAAGATCAGC
1 --CTGATCAAAGATCAGC
316396 CTGATC
1 CTGATC
316402 TACGACCACC
Statistics
Matches: 30, Mismatches: 6, Indels: 6
0.71 0.14 0.14
Matches are distributed among these distances:
15 1 0.03
16 17 0.57
17 11 0.37
18 1 0.03
ACGTcount: A:0.31, C:0.29, G:0.16, T:0.24
Consensus pattern (16 bp):
CTGATCAAAGATCAGC
Left flanking sequence: Indices 315847 -- 316346
CGCTCTTGGACTTAAGACTATGCGCGTCGCGTGCTCGATCTAGCAATCTTGGACAATTGTTTTGA
TGAACTGTCACGAAACTCAAAAATAAAGAAGAGAAAGAACTGGGAGTTGGCGCCTACATAACTGG
TTGCTTGCTTACCAAGCCATCCTGGCAAGCTCCTCCAGTTTGATTCTTATTCTTGACTTGACTTA
TTATTATAAAAACTACTCACTAAAAAAATGAAAGACGATCTATTATCTACCCAAGAAGATAGAGA
GTCCCACATACGATAAAAGGTCACAAATAGAGTTGAACCAAGTAACATTGCAAAGGCATAATGAT
AGTAGGGTCGGGATATCCCCGCCCTCCGAACCGGACGTGAAGGTCTCCCCTCATCCGGCTCTCTG
CAGGGGAATCTCCACTCACTGCTTCCCCTAATATCCTCCCTTTACCACATCATGGGGGTTTACAG
GAGATCCCAGAGGCTCGCTCGGAAAGGCCTGATCTACGACCACTT
Right flanking sequence: Indices 316402 -- 316901
TACGACCACCCTTTGACTCAACTCTACTCTAGTAGTCACTAGACTCACTATAGTAGTCCGTCCGG
CTGCTCTTGCTGAAATCATTACTCTTCATTCTCCCGTGCTCTAGCAATTGCGCTCCCTAGACCAC
TACCATGTAGTTAGGTAGGGACAATCAATCCGTAGTGACGGGAATCTAGGAATGAATGGGGATCC
CTATCAATATAAAAATGAAGAATATATAATTAGACTTTTCTCCCTTTCTCTCACTCAATAGATGT
ATCTGGTCTGATACGGTACAGTACAATACGAGACGATGAAATGCAATGGGATGGATGGTGGAGGG
CTGCCTGCGCCCAAAAGCGATGATTCACTTGTCCCCTTGTCCATAGGGACCTCGTGGCATACAAC
CGAAACGACTCCCGCTAGATAGCCGCCCCTTTCTCTCTTTTTACAGCCTCGTGGACGGACGAAAG
AAGGGAAGTTACAGAACGGGGCAGTGAAGGCTCGCGAAGTAGACA
Found at i:319514 original size:16 final size:16
Alignment explanation
Indices: 319495--319594 Score: 76
Period size: 16 Copynumber: 6.2 Consensus size: 16
319485 CAAAGATCAG
319495 CCTGATCTACGACCAC
1 CCTGATCTACGACCAC
*
319511 CCTGATCGTA-GAGCAC
1 CCTGATC-TACGACCAC
* * * *
319527 CCTGATTTACAATCAG
1 CCTGATCTACGACCAC
*
319543 CCTGATCTACGAGCAC
1 CCTGATCTACGACCAC
* * * * *
319559 TTCTGATCTTCAATCAG
1 -CCTGATCTACGACCAC
319576 CCTGATCTACGACCAC
1 CCTGATCTACGACCAC
319592 CCT
1 CCT
319595 TGACTTGACA
Statistics
Matches: 62, Mismatches: 19, Indels: 6
0.71 0.22 0.07
Matches are distributed among these distances:
15 2 0.03
16 47 0.76
17 13 0.21
ACGTcount: A:0.25, C:0.35, G:0.15, T:0.25
Consensus pattern (16 bp):
CCTGATCTACGACCAC
Left flanking sequence: Indices 318995 -- 319494
GTGAGGTCGTCTTTCTTTCCAGCCGCCATACGGTTCGCCTTAAAGCCTTAAAGACGGAGAAGGGG
AGGAGCAGTTATCTATGTAATTAAGGTCTTTGTTGGCCGTTGTTCCGGTCGAGCACTCTCTTTTC
TTTGTCCAATTCCGTCTTACCAAACAAGACTGACTTCTTACCAACCCGCGAAGGGTTGTGAGGTT
GGACCAGGTACGAAGAATGAATCTATATCTGTGCACGGAAGTTGCTGGCCGGCGGCCGCTCAACT
GTTCGAGCGCAATGCAGTGGTGGTTGGTTCCGATTCGACAAGGGTAGAATGCCTGGTCGAAGGGC
CAGTACAGTAGGTAGCAGGCGTGTTCGTTTTGGCTCCCGAGCGAGAACGAGAAATAGGCGATGCA
CCATCCTTGCTGCCCTCTCGGAGAAAAAGCGGATTTACAATCAGCCTGCTTAAGCCTAAGATTGT
AGGGGAGCACCCTGATCGTTCCGACCACTTCTGATCAAAGATCAG
Right flanking sequence: Indices 319595 -- 320094
TGACTTGACAGATTCATCCAATTGAACCCACACTCAAAGGAGGACCACAAGCTCGGGGCTCGACG
AAACATAAAGTATCAGCATTAAGAAACTTCTTGGGGTTAGCAGTGAAAGAAAGAGCCCGGCATTT
TTTTCTTCATTCATATTCATAGCGGAGTCTACTAAAAGAGGGACCAGCCTCATCGTGGTGATTAG
AGGACATCTCTGATCGTTCACCTATAATGTGACACGTTCCCCCCCAGTTATATGATCAACGGGAT
CAGTCGGCTAGAGAGCGGGGCTCTTCTTCTTCCGGGGAGGCAAAGTCGTCCCCTCTACTGATCGA
ACCCTCAGTTCGGAGGTCTTCGTCAACATGTTACGAGGCTCCAGTCTTCGGCGGGTCACCATTAC
TTGACTTAGAAAGACGAACATCTGGGCAAGGGAAAGCGCAGTGCGCCTGGTGCAAATGGCTTTCT
TTTTTCATGATATACCAATCAGAATGGAAGGTCCTACCTACGTAC
Found at i:319531 original size:32 final size:31
Alignment explanation
Indices: 319454--319594 Score: 75
Period size: 32 Copynumber: 4.3 Consensus size: 31
319444 GATTGTAGGG
* * *
319454 GAGCACCCTGATCGTTCCGACCACTTCTGATCAAA
1 GAGCACCCTGATC--TACGACCAC-CCTGATC-TA
* *
319489 GATCAGCCTGATCTACGACCACCCTGATCGTA
1 GAGCACCCTGATCTACGACCACCCTGATC-TA
* * * *
319521 GAGCACCCTGATTTACAATCAGCCTGATCTA
1 GAGCACCCTGATCTACGACCACCCTGATCTA
* * * * *
319552 CGAGCACTTCTGATCTTCAATCAGCCTGATCTA
1 -GAGCAC-CCTGATCTACGACCACCCTGATCTA
*
319585 CGACCACCCT
1 -GAGCACCCT
319595 TGACTTGACA
Statistics
Matches: 87, Mismatches: 17, Indels: 7
0.78 0.15 0.06
Matches are distributed among these distances:
31 2 0.02
32 38 0.44
33 36 0.41
35 11 0.13
ACGTcount: A:0.26, C:0.34, G:0.16, T:0.24
Consensus pattern (31 bp):
GAGCACCCTGATCTACGACCACCCTGATCTA
Left flanking sequence: Indices 318954 -- 319453
GGGATACTAAAGTAGCTCTCACTGACACCATCTACGAGAAGGTGAGGTCGTCTTTCTTTCCAGCC
GCCATACGGTTCGCCTTAAAGCCTTAAAGACGGAGAAGGGGAGGAGCAGTTATCTATGTAATTAA
GGTCTTTGTTGGCCGTTGTTCCGGTCGAGCACTCTCTTTTCTTTGTCCAATTCCGTCTTACCAAA
CAAGACTGACTTCTTACCAACCCGCGAAGGGTTGTGAGGTTGGACCAGGTACGAAGAATGAATCT
ATATCTGTGCACGGAAGTTGCTGGCCGGCGGCCGCTCAACTGTTCGAGCGCAATGCAGTGGTGGT
TGGTTCCGATTCGACAAGGGTAGAATGCCTGGTCGAAGGGCCAGTACAGTAGGTAGCAGGCGTGT
TCGTTTTGGCTCCCGAGCGAGAACGAGAAATAGGCGATGCACCATCCTTGCTGCCCTCTCGGAGA
AAAAGCGGATTTACAATCAGCCTGCTTAAGCCTAAGATTGTAGGG
Right flanking sequence: Indices 319595 -- 320094
TGACTTGACAGATTCATCCAATTGAACCCACACTCAAAGGAGGACCACAAGCTCGGGGCTCGACG
AAACATAAAGTATCAGCATTAAGAAACTTCTTGGGGTTAGCAGTGAAAGAAAGAGCCCGGCATTT
TTTTCTTCATTCATATTCATAGCGGAGTCTACTAAAAGAGGGACCAGCCTCATCGTGGTGATTAG
AGGACATCTCTGATCGTTCACCTATAATGTGACACGTTCCCCCCCAGTTATATGATCAACGGGAT
CAGTCGGCTAGAGAGCGGGGCTCTTCTTCTTCCGGGGAGGCAAAGTCGTCCCCTCTACTGATCGA
ACCCTCAGTTCGGAGGTCTTCGTCAACATGTTACGAGGCTCCAGTCTTCGGCGGGTCACCATTAC
TTGACTTAGAAAGACGAACATCTGGGCAAGGGAAAGCGCAGTGCGCCTGGTGCAAATGGCTTTCT
TTTTTCATGATATACCAATCAGAATGGAAGGTCCTACCTACGTAC
Found at i:319573 original size:33 final size:32
Alignment explanation
Indices: 319511--319594 Score: 109
Period size: 33 Copynumber: 2.6 Consensus size: 32
319501 CTACGACCAC
319511 CCTGATCGTA-GAGCACCCTGATTTACAATCAG
1 CCTGATC-TACGAGCACCCTGATTTACAATCAG
*
319543 CCTGATCTACGAGCACTTCTGATCTT-CAATCAG
1 CCTGATCTACGAGCAC-CCTGAT-TTACAATCAG
*
319576 CCTGATCTACGACCACCCT
1 CCTGATCTACGAGCACCCT
319595 TGACTTGACA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
31 2 0.04
32 15 0.33
33 27 0.59
34 2 0.04
ACGTcount: A:0.25, C:0.33, G:0.15, T:0.26
Consensus pattern (32 bp):
CCTGATCTACGAGCACCCTGATTTACAATCAG
Left flanking sequence: Indices 319011 -- 319510
TTCCAGCCGCCATACGGTTCGCCTTAAAGCCTTAAAGACGGAGAAGGGGAGGAGCAGTTATCTAT
GTAATTAAGGTCTTTGTTGGCCGTTGTTCCGGTCGAGCACTCTCTTTTCTTTGTCCAATTCCGTC
TTACCAAACAAGACTGACTTCTTACCAACCCGCGAAGGGTTGTGAGGTTGGACCAGGTACGAAGA
ATGAATCTATATCTGTGCACGGAAGTTGCTGGCCGGCGGCCGCTCAACTGTTCGAGCGCAATGCA
GTGGTGGTTGGTTCCGATTCGACAAGGGTAGAATGCCTGGTCGAAGGGCCAGTACAGTAGGTAGC
AGGCGTGTTCGTTTTGGCTCCCGAGCGAGAACGAGAAATAGGCGATGCACCATCCTTGCTGCCCT
CTCGGAGAAAAAGCGGATTTACAATCAGCCTGCTTAAGCCTAAGATTGTAGGGGAGCACCCTGAT
CGTTCCGACCACTTCTGATCAAAGATCAGCCTGATCTACGACCAC
Right flanking sequence: Indices 319595 -- 320094
TGACTTGACAGATTCATCCAATTGAACCCACACTCAAAGGAGGACCACAAGCTCGGGGCTCGACG
AAACATAAAGTATCAGCATTAAGAAACTTCTTGGGGTTAGCAGTGAAAGAAAGAGCCCGGCATTT
TTTTCTTCATTCATATTCATAGCGGAGTCTACTAAAAGAGGGACCAGCCTCATCGTGGTGATTAG
AGGACATCTCTGATCGTTCACCTATAATGTGACACGTTCCCCCCCAGTTATATGATCAACGGGAT
CAGTCGGCTAGAGAGCGGGGCTCTTCTTCTTCCGGGGAGGCAAAGTCGTCCCCTCTACTGATCGA
ACCCTCAGTTCGGAGGTCTTCGTCAACATGTTACGAGGCTCCAGTCTTCGGCGGGTCACCATTAC
TTGACTTAGAAAGACGAACATCTGGGCAAGGGAAAGCGCAGTGCGCCTGGTGCAAATGGCTTTCT
TTTTTCATGATATACCAATCAGAATGGAAGGTCCTACCTACGTAC
Found at i:332534 original size:22 final size:22
Alignment explanation
Indices: 332478--332541 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
332468 AGTCAAAAGA
*
332478 ATAATTATATATATATAAATA-T
1 ATAATTATAT-TATATAATTATT
*
332500 ATAATAATA-TATATAATTATT
1 ATAATTATATTATATAATTATT
*
332521 ATTATTATATTATATAATTAT
1 ATAATTATATTATATAATTAT
332542 AAGGCGGGAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
20 9 0.25
21 8 0.22
22 19 0.53
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATAATTATATTATATAATTATT
Left flanking sequence: Indices 331978 -- 332477
CTCTTAGCCCTTATATTCTTTCTTTTCTGGGCCATATGGACTTATTGGCTCAGTGGGGGGGGCTT
TCAAATTCCCTTGCTAAGGGTACTGGGCCTGGCTCAAAAGAAGGAAGATCGAAAGAAAAAGAGAG
TTCAACTGCGGGACCTGCAATTCCAACCCTAGGGATGGGAAAGGAGAACCAATAACTCCTATATG
GTCCTTTTATTAGGGAAAACTTCTATAGAGCCTACCACCATATTTGAAAGGAGAAATGAAAGAAA
TTTGGTTTGCGAGCCCTAGTTGAAACGAAATACCCTTACTTAGCCTTACACCCTCGCTCTCTGGC
AGATGGACTAGAAGCGATGCCCTGCCCTTAATCTTAAACCTTAATATTAATACTAGCGCTCTCCG
TATTACTAGCCCGACATAGAAGGGACGAAAGGAAAAGAATGATATTTGAAAGGAGAGGAAAGACT
AGTTATTGCTAGCTCTGAATAAGACCAGCCAGATAAGTCAAAAGA
Right flanking sequence: Indices 332542 -- 333041
AAGGCGGGAAAATATGTTATTGTTATGCTGAGCACTGGCAGGCAAAATGAAGTAAATAATAATAA
TACAAAAAGCAGGGTTTGACCTCTAATCCGGAAGGAACTTGATACGGGCTTGATCAAAACACTTG
CCTTATCCCGCCGCTATATGGTATTCTAAATATAGCCCTTGCCAAAGATATCAAGAAATTACCAA
TTCTATATAGGCTATATAGCCTATAGGCGATTGAGACTTTTGACTAGAAAGTATTAGTTCCCCTA
GTCAGACCCGGACTTATATTACTCTTACAACTGTTAAGAAAGACCGGGACTCTTAGTGGTAAATA
ACTTCGATCTTTCAAGATAGAAACTGGTACTGCTCTAAAAGGTACTACTACGGGTACCGATACGC
CTGGCGGGCGAGAAAAGATAGCGCTGACTCTTTTTATACTGCTTGAAGAAAAGTCTCTCTTATCG
TTAGCCAGCCCTATCAGAAACAGGACCCGGGACTGAAGGATTGCT
Found at i:332534 original size:24 final size:24
Alignment explanation
Indices: 332481--332536 Score: 60
Period size: 24 Copynumber: 2.3 Consensus size: 24
332471 CAAAAGAATA
332481 ATTATATATATATAAATATATAAT
1 ATTATATATATATAAATATATAAT
* * * *
332505 AATATATATA-ATTATTATTATTAT
1 ATTATATATATATAAATA-TATAAT
332529 ATTATATA
1 ATTATATA
332537 ATTATAAGGC
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
23 5 0.19
24 21 0.81
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (24 bp):
ATTATATATATATAAATATATAAT
Left flanking sequence: Indices 331981 -- 332480
TTAGCCCTTATATTCTTTCTTTTCTGGGCCATATGGACTTATTGGCTCAGTGGGGGGGGCTTTCA
AATTCCCTTGCTAAGGGTACTGGGCCTGGCTCAAAAGAAGGAAGATCGAAAGAAAAAGAGAGTTC
AACTGCGGGACCTGCAATTCCAACCCTAGGGATGGGAAAGGAGAACCAATAACTCCTATATGGTC
CTTTTATTAGGGAAAACTTCTATAGAGCCTACCACCATATTTGAAAGGAGAAATGAAAGAAATTT
GGTTTGCGAGCCCTAGTTGAAACGAAATACCCTTACTTAGCCTTACACCCTCGCTCTCTGGCAGA
TGGACTAGAAGCGATGCCCTGCCCTTAATCTTAAACCTTAATATTAATACTAGCGCTCTCCGTAT
TACTAGCCCGACATAGAAGGGACGAAAGGAAAAGAATGATATTTGAAAGGAGAGGAAAGACTAGT
TATTGCTAGCTCTGAATAAGACCAGCCAGATAAGTCAAAAGAATA
Right flanking sequence: Indices 332537 -- 333036
ATTATAAGGCGGGAAAATATGTTATTGTTATGCTGAGCACTGGCAGGCAAAATGAAGTAAATAAT
AATAATACAAAAAGCAGGGTTTGACCTCTAATCCGGAAGGAACTTGATACGGGCTTGATCAAAAC
ACTTGCCTTATCCCGCCGCTATATGGTATTCTAAATATAGCCCTTGCCAAAGATATCAAGAAATT
ACCAATTCTATATAGGCTATATAGCCTATAGGCGATTGAGACTTTTGACTAGAAAGTATTAGTTC
CCCTAGTCAGACCCGGACTTATATTACTCTTACAACTGTTAAGAAAGACCGGGACTCTTAGTGGT
AAATAACTTCGATCTTTCAAGATAGAAACTGGTACTGCTCTAAAAGGTACTACTACGGGTACCGA
TACGCCTGGCGGGCGAGAAAAGATAGCGCTGACTCTTTTTATACTGCTTGAAGAAAAGTCTCTCT
TATCGTTAGCCAGCCCTATCAGAAACAGGACCCGGGACTGAAGGA
Found at i:332540 original size:8 final size:8
Alignment explanation
Indices: 332478--332542 Score: 50
Period size: 8 Copynumber: 8.1 Consensus size: 8
332468 AGTCAAAAGA
332478 ATAATTAT
1 ATAATTAT
332486 AT-A-TAT
1 ATAATTAT
332492 ATAAATATAT
1 AT-AAT-TAT
332502 AATAATATAT
1 -ATAAT-TAT
332512 ATAATTAT
1 ATAATTAT
332520 -T-ATTAT
1 ATAATTAT
332526 -TATATTAT
1 ATA-ATTAT
332534 ATAATTAT
1 ATAATTAT
332542 A
1 A
332543 AGGCGGGAAA
Statistics
Matches: 49, Mismatches: 0, Indels: 16
0.75 0.00 0.25
Matches are distributed among these distances:
6 11 0.22
7 2 0.04
8 17 0.35
9 7 0.14
10 10 0.20
11 2 0.04
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (8 bp):
ATAATTAT
Left flanking sequence: Indices 331978 -- 332477
CTCTTAGCCCTTATATTCTTTCTTTTCTGGGCCATATGGACTTATTGGCTCAGTGGGGGGGGCTT
TCAAATTCCCTTGCTAAGGGTACTGGGCCTGGCTCAAAAGAAGGAAGATCGAAAGAAAAAGAGAG
TTCAACTGCGGGACCTGCAATTCCAACCCTAGGGATGGGAAAGGAGAACCAATAACTCCTATATG
GTCCTTTTATTAGGGAAAACTTCTATAGAGCCTACCACCATATTTGAAAGGAGAAATGAAAGAAA
TTTGGTTTGCGAGCCCTAGTTGAAACGAAATACCCTTACTTAGCCTTACACCCTCGCTCTCTGGC
AGATGGACTAGAAGCGATGCCCTGCCCTTAATCTTAAACCTTAATATTAATACTAGCGCTCTCCG
TATTACTAGCCCGACATAGAAGGGACGAAAGGAAAAGAATGATATTTGAAAGGAGAGGAAAGACT
AGTTATTGCTAGCTCTGAATAAGACCAGCCAGATAAGTCAAAAGA
Right flanking sequence: Indices 332543 -- 333042
AGGCGGGAAAATATGTTATTGTTATGCTGAGCACTGGCAGGCAAAATGAAGTAAATAATAATAAT
ACAAAAAGCAGGGTTTGACCTCTAATCCGGAAGGAACTTGATACGGGCTTGATCAAAACACTTGC
CTTATCCCGCCGCTATATGGTATTCTAAATATAGCCCTTGCCAAAGATATCAAGAAATTACCAAT
TCTATATAGGCTATATAGCCTATAGGCGATTGAGACTTTTGACTAGAAAGTATTAGTTCCCCTAG
TCAGACCCGGACTTATATTACTCTTACAACTGTTAAGAAAGACCGGGACTCTTAGTGGTAAATAA
CTTCGATCTTTCAAGATAGAAACTGGTACTGCTCTAAAAGGTACTACTACGGGTACCGATACGCC
TGGCGGGCGAGAAAAGATAGCGCTGACTCTTTTTATACTGCTTGAAGAAAAGTCTCTCTTATCGT
TAGCCAGCCCTATCAGAAACAGGACCCGGGACTGAAGGATTGCTC
Found at i:335414 original size:11 final size:13
Alignment explanation
Indices: 335398--335429 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
335388 ATAATAAAAG
335398 TCTTTTAT-AGA-
1 TCTTTTATAAGAC
335409 TCTTTTATAAGAC
1 TCTTTTATAAGAC
335422 TCTTTTAT
1 TCTTTTAT
335430 GGGGCCTTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 3 0.16
13 8 0.42
ACGTcount: A:0.25, C:0.12, G:0.06, T:0.56
Consensus pattern (13 bp):
TCTTTTATAAGAC
Left flanking sequence: Indices 334898 -- 335397
CTCAAACTGGAAATTTATAACTTATAAAGCTGGCTAGCTTTTGCCTACTGAAAGAGATTAGAAAT
GGAATCAATCCCACTAGCAACTAAAGGGACTATTACAAGAGCCTAGCTATTTAAGAGGGGATCCT
CTTTCTTTAGGGAAGGGAGATTATAGAATATTATTAATATTAATTAACTATCCTAAAAAAGATAA
CTGTATTGAATCTCTAAATTTACTGGCTTCTTTGATTGTTCCACATGAATATGATGCCATGGCCT
GGATCTTATTAGCTCATTAAAAAGAATCTCTGCGGCTACAGGAGATAGCCCTAGCCATTGACCTT
GCCGATTAATAACTGGCCCTTGAAAAGATGGCAGATTGAGACAGGCTTTCCTAATCCCCCTATCC
TTTATTTGTTGGAACTGCAGATCAGTCTCAGTTTCACTGGATCTCAAAGAGGAAGAAGGAAAGGA
CAGGACAACGCCAACGCAGGGTAGGGTGTAACATAATAATAAAAG
Right flanking sequence: Indices 335430 -- 335929
GGGGCCTTATATCCAGTCTTGCTTCCTTTTTTGGGTTACATAGGAGGGGTACGAGAGAGAGATTT
TCTTTCTATCTATTTAGGACATGGGTTCCGAGGTCCATGGATCCAGTTTCAGTTGAAATTCCAGT
CCCGGGTTAAGCCCTTCAAGTGGAAGCAAACAAGTGAATGGGGAAGTCCGTGTAAAAGAGTTCTT
TTCCATCCCGGTCAATTCCTTCTTTTGGTAGTTATCTGGGGAGTTCGGTTACATCTATTGGCATC
TATTGGGAATTGCCTGCCATCCATTGAAAGTTCCCTGCCACCTAGTTGGCTTCCTTTACTTCTTA
CTTCTATAGAGGCGAGTTCGAGTGAGAAGGTGAACAAGCAATAGATTATATCTTTCTCGTCCTAA
GCCTATCTAGTTGGATAAGGTAAGTAAGCCCATACCCCTAGAGTTGCAGCAAGGGACAATCCATA
CAGTTTATGAAAACCTGTTACAAATCCTCGGGTTTAGTTTGAGTT
Found at i:354513 original size:18 final size:18
Alignment explanation
Indices: 354492--354531 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
354482 ATTCTTTTAT
354492 TCTAATTAATAA-TATCTA
1 TCTAA-TAATAATTATCTA
*
354510 TCTAATATTAATTATCTA
1 TCTAATAATAATTATCTA
354528 TCTA
1 TCTA
354532 TAAACAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 5 0.25
18 15 0.75
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.47
Consensus pattern (18 bp):
TCTAATAATAATTATCTA
Left flanking sequence: Indices 353992 -- 354491
CTCATGAGAAGCAAGCCCAGCAGGCCCTGCCTTAACCTGTCCCCAGACAGCCAGCCCTCACCAGG
CTGCTGGCATTGCTAAATGCTCCGCCACGAAGCAAGCTCTCCCGAATACGACAGATGCGGAAGTG
GCTAAAGAAGTCGGAGGAAGAAAGTAGTTGGGCAACTGTATGCACTAGGGTACATTAGTATTCTG
GGAATTGGCAACATTGACAGAAAGGGGAATTAAAGGGGGTAGGAATCCACTTTTTTAGGTGTAGC
TATACTAAAGTAAGTAGTCGGCCTAACCTTCGGTTCCCGTAACCAAGTTTTTCTTTCGCACTCCT
TTTTTACTTTTTCTGAAGTGTGGGGCAAAGGGCGCCCTCTACTTCTACTTCTAACTAAAGGCGAA
CAGCCGGCTTTGCAAGCTAATATCTAACCCCCGCCCGTTTGAGTCGTTGCGAGCCGGAAAGCGTA
CCGGCAGTTTGAGTCGCGAAAGGGCCGCTTGCTTAATTCTTTTAT
Right flanking sequence: Indices 354532 -- 355031
TAAACAATAAGAAATATATATATATATATATATATAAATATATTATTATATATATATAATAATTT
TTTTTTTTCCAATTGTTGATTCCTGGGAAGAGGAAGAAGCAGATAGAGCAAAGTCCCCCTCTTTC
CGTCCGCTCTTCCCGAAGTGAGCGAATTGCATGTAGAGATCATAGGGGCTTATAGTTTAATTGGT
TGAAACGTACCGCTCATAACGGTGATATTGTAGGTTCGAGCCCTACTAAGCCTACCACCCCCTTC
CCTTCTCTTCACCCGATACAAGGCAGTCGAAGTCCCCGCCACCCTGCGGATCTCAATCTAGCGAC
GGCACCTGGAACCACACTGCTGCCGCTGCCCTTCGGGCACGCCTCCTACGCTCTTGCAGCATGCC
CCCTTAAAACGGCTTTCGTAATACGCGAAGCGGCTGAGCGATAGCTCTTCGATCGCTATATTCTT
GCGATAGCGAAGGATCGAAGAGCGAAGTTACGGCTTTAGGCGAAG
Found at i:354552 original size:2 final size:2
Alignment explanation
Indices: 354545--354589 Score: 67
Period size: 2 Copynumber: 23.5 Consensus size: 2
354535 ACAATAAGAA
*
354545 AT AT AT AT AT AT AT AT AT AT AT AA AT AT AT -T AT -T AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
354585 AT AT A
1 AT AT A
354590 ATAATTTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
1 2 0.05
2 37 0.95
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 354045 -- 354544
GCCCTCACCAGGCTGCTGGCATTGCTAAATGCTCCGCCACGAAGCAAGCTCTCCCGAATACGACA
GATGCGGAAGTGGCTAAAGAAGTCGGAGGAAGAAAGTAGTTGGGCAACTGTATGCACTAGGGTAC
ATTAGTATTCTGGGAATTGGCAACATTGACAGAAAGGGGAATTAAAGGGGGTAGGAATCCACTTT
TTTAGGTGTAGCTATACTAAAGTAAGTAGTCGGCCTAACCTTCGGTTCCCGTAACCAAGTTTTTC
TTTCGCACTCCTTTTTTACTTTTTCTGAAGTGTGGGGCAAAGGGCGCCCTCTACTTCTACTTCTA
ACTAAAGGCGAACAGCCGGCTTTGCAAGCTAATATCTAACCCCCGCCCGTTTGAGTCGTTGCGAG
CCGGAAAGCGTACCGGCAGTTTGAGTCGCGAAAGGGCCGCTTGCTTAATTCTTTTATTCTAATTA
ATAATATCTATCTAATATTAATTATCTATCTATAAACAATAAGAA
Right flanking sequence: Indices 354590 -- 355089
ATAATTTTTTTTTTTCCAATTGTTGATTCCTGGGAAGAGGAAGAAGCAGATAGAGCAAAGTCCCC
CTCTTTCCGTCCGCTCTTCCCGAAGTGAGCGAATTGCATGTAGAGATCATAGGGGCTTATAGTTT
AATTGGTTGAAACGTACCGCTCATAACGGTGATATTGTAGGTTCGAGCCCTACTAAGCCTACCAC
CCCCTTCCCTTCTCTTCACCCGATACAAGGCAGTCGAAGTCCCCGCCACCCTGCGGATCTCAATC
TAGCGACGGCACCTGGAACCACACTGCTGCCGCTGCCCTTCGGGCACGCCTCCTACGCTCTTGCA
GCATGCCCCCTTAAAACGGCTTTCGTAATACGCGAAGCGGCTGAGCGATAGCTCTTCGATCGCTA
TATTCTTGCGATAGCGAAGGATCGAAGAGCGAAGTTACGGCTTTAGGCGAAGAGCGAGAGCGAAA
CCCTAAAGTCTTATTGTTTTGTTCCCGAACAACGATCATTCATTA
Found at i:356381 original size:2 final size:2
Alignment explanation
Indices: 356374--356407 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
356364 GTGGATAAAT
* *
356374 TA TA TA TA TA TA TA TA TC TT TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
356408 AAGATATTTA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 355874 -- 356373
AAAGGGAAAGCCGTGGAGACGGCAGACTCGCCAGTCAGGCACACCGTGAGGCTGACTACAGCAGA
CCGAGAGGTTACAATTCCAGTTTTCCTGTTTGGGAGTGAATGTAGGAAGTTCAGACGGTGGATCA
GGTGTGAACATTCAACCAAAGGCGTCTTGGGGATCGGCAATAGCTAAGCATTGTGGCCATCACAG
TTCAAGCTACGTATGGCTGGCGTACAACCTACGGGCTTCTAAAAGAAAAACAAAAAAAAAGGATG
ATGGTACCTTTAGTCCAATCTTAGACAAAGAGCAAGGAGGGTGGTCGTAGATCCGCTGGGTAGAC
CATGGCTCCAACCAGGGTGGTTCATGACTGGGCTAATAAAAAAGAGTATCATATCAAGCAGGGAA
AGGCGGGATGGAAGGCGGAAAAGGCTTGGCTTTGTTTCACAGAAAAAGGGACTAAGGAAATTGAG
TTTCCGTAGTGGTGATGCTGGCGTCAGTTGACCCGGTGGATAAAT
Right flanking sequence: Indices 356408 -- 356907
AAGATATTTATTTCCATTTTTTTATATGCAAGATCGAAGACGCGATTCGCGCGGGTCCGCTTTTC
TTTTTAAGATAGCAAGGAGGCGATTTGTTCGCTGGGCGATTCAGCTAGCCAAATCGCACTAATGC
GATTCATTCGCCCTACTATCCTACAGAGCAATTCAAACTCTTAGTAAGACTAGGGCTAGGGCGAC
TCATTCTATTCTCTCTGAGGTCAGGTAGGTGAAGCGTCTAGCTTAGGGGGGCGCGTCGAATCGCT
GAAAGGCCTTGGTGATTTGAACATTTGGTAAGATGAAGATAGAAAACCAAAATTCTTCCTAACTT
CACGTCAATAGTCTCGTATCCATGCTGCCCCGACTCCAAACTCGATGTTTGTTAACTAAGCGGGA
CATTCCCAAACTCTTTTTTATCAAAGCCCTTTTTCGTTCTCTTGTACAGCCCTTACCAGGCTGTT
TTCATTATGTGTTCTTTGCAGTGTCTAGGGAGGTTAGGAGTGAGT
Found at i:368941 original size:2 final size:2
Alignment explanation
Indices: 368934--368983 Score: 61
Period size: 2 Copynumber: 26.5 Consensus size: 2
368924 GTTATATTAG
* *
368934 AT AT AT AT A- AT AT -T AG AT AT AT AT AT AT TT AT A- AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
368973 AT AT AT AT AT A
1 AT AT AT AT AT A
368984 GTACAACACT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
1 3 0.07
2 38 0.93
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 368434 -- 368933
GGTAAGATAGGCCAAATTATAAGATGCCTTTGGTAGTAACAATCATCAATACAACATTTAGAGTG
ATGCCTGCCCGACCTCGCACTCTAAACATTGAACAAACTATTCTACGGCCTCGCCAAATAAGGAT
TACCTTTCGTCCAGGAGCACAATCACAGGCACCACCCGAAAAGTGAGCTTCAGACGGAAAGCCAT
AGTCATGGCCTAAAATTGGAATCTCCAAAACAAAAATCGGAGTAGGGACTTGATCTGTTGTAGGC
GCTGCTGAAGCCCGAGCTACAGCTGTCATGTCACTAATCTTTCCTCGATTTTCTTGTTCTCTTGC
AGATCCTCATAATTAGGCACCGCATATAAGATTAGCCCGTGTCAACCTGAAGGAATAGTCGTCTT
GGGCAGTCACTCTTTCGGAAACCATATCTCCTGTTGATACGAGGCAATGAATGAATGTGAATTTG
GATTCTATATAAGCTATGCTGCGTATCGCACGCTTGTTATATTAG
Right flanking sequence: Indices 368984 -- 369483
GTACAACACTCACTCTTCTTCCTGAAAGCGTCCGTTCACAGAGGTTGTTGTAGTTTTTGTAGTTG
CAATAATTTCTTTTTTTTCATCGAGATTGGGTTGGTGTTTTTCGTATCGAAATTGGATCGCCCTT
TCTCGTACTGTATCGTATCATACGATTCTTTCAGACGAATCTATTCATTTTTTCTAGGTGGAAAA
CCTTAGACTCTGGCTTCTCCGCCTTCCTTTAGTCAGGAATCGAGTCAGGCCGTTCCCAATCCTGT
ATGTGACCTTCCCCGGAAGTCCCTCCAGCTTGTCTGGTTTACCGGGCTAACTATTCACTGATTCC
AGATTTCCCCTGCTGGGCTCGGAAGTCAAAGTCCCCACGCCATTCAACGACACGAGGTAATCCCG
GTTCTCCCGATCTGCCTTGTAAGCCCGCTAACTCCTACGCCATTCCCGGTCGCCCGGTATGGGCA
GTTTACTTCCTATCTAGTCGCTCTAGTAGCTAGCTATCGTATCCG
Found at i:368948 original size:16 final size:15
Alignment explanation
Indices: 368926--368978 Score: 70
Period size: 16 Copynumber: 3.3 Consensus size: 15
368916 GCACGCTTGT
368926 TATATTAGATATATA
1 TATATTAGATATATA
368941 TAATATTAGATATATA
1 T-ATATTAGATATATA
*
368957 TATATTTATAATATATA
1 TATA-TTA-GATATATA
368974 TATAT
1 TATAT
368979 ATATAGTACA
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
15 4 0.12
16 19 0.56
17 11 0.32
ACGTcount: A:0.47, C:0.00, G:0.04, T:0.49
Consensus pattern (15 bp):
TATATTAGATATATA
Left flanking sequence: Indices 368426 -- 368925
AGTGGAATGGTAAGATAGGCCAAATTATAAGATGCCTTTGGTAGTAACAATCATCAATACAACAT
TTAGAGTGATGCCTGCCCGACCTCGCACTCTAAACATTGAACAAACTATTCTACGGCCTCGCCAA
ATAAGGATTACCTTTCGTCCAGGAGCACAATCACAGGCACCACCCGAAAAGTGAGCTTCAGACGG
AAAGCCATAGTCATGGCCTAAAATTGGAATCTCCAAAACAAAAATCGGAGTAGGGACTTGATCTG
TTGTAGGCGCTGCTGAAGCCCGAGCTACAGCTGTCATGTCACTAATCTTTCCTCGATTTTCTTGT
TCTCTTGCAGATCCTCATAATTAGGCACCGCATATAAGATTAGCCCGTGTCAACCTGAAGGAATA
GTCGTCTTGGGCAGTCACTCTTTCGGAAACCATATCTCCTGTTGATACGAGGCAATGAATGAATG
TGAATTTGGATTCTATATAAGCTATGCTGCGTATCGCACGCTTGT
Right flanking sequence: Indices 368979 -- 369478
ATATAGTACAACACTCACTCTTCTTCCTGAAAGCGTCCGTTCACAGAGGTTGTTGTAGTTTTTGT
AGTTGCAATAATTTCTTTTTTTTCATCGAGATTGGGTTGGTGTTTTTCGTATCGAAATTGGATCG
CCCTTTCTCGTACTGTATCGTATCATACGATTCTTTCAGACGAATCTATTCATTTTTTCTAGGTG
GAAAACCTTAGACTCTGGCTTCTCCGCCTTCCTTTAGTCAGGAATCGAGTCAGGCCGTTCCCAAT
CCTGTATGTGACCTTCCCCGGAAGTCCCTCCAGCTTGTCTGGTTTACCGGGCTAACTATTCACTG
ATTCCAGATTTCCCCTGCTGGGCTCGGAAGTCAAAGTCCCCACGCCATTCAACGACACGAGGTAA
TCCCGGTTCTCCCGATCTGCCTTGTAAGCCCGCTAACTCCTACGCCATTCCCGGTCGCCCGGTAT
GGGCAGTTTACTTCCTATCTAGTCGCTCTAGTAGCTAGCTATCGT
Found at i:368970 original size:15 final size:15
Alignment explanation
Indices: 368934--368983 Score: 54
Period size: 13 Copynumber: 3.6 Consensus size: 15
368924 GTTATATTAG
368934 ATATATATAATAT-T
1 ATATATATAATATAT
*
368948 AGATATAT-ATATAT
1 ATATATATAATATAT
*
368962 TTATA-AT-ATATAT
1 ATATATATAATATAT
368975 ATATATATA
1 ATATATATA
368984 GTACAACACT
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
13 16 0.55
14 13 0.45
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (15 bp):
ATATATATAATATAT
Left flanking sequence: Indices 368434 -- 368933
GGTAAGATAGGCCAAATTATAAGATGCCTTTGGTAGTAACAATCATCAATACAACATTTAGAGTG
ATGCCTGCCCGACCTCGCACTCTAAACATTGAACAAACTATTCTACGGCCTCGCCAAATAAGGAT
TACCTTTCGTCCAGGAGCACAATCACAGGCACCACCCGAAAAGTGAGCTTCAGACGGAAAGCCAT
AGTCATGGCCTAAAATTGGAATCTCCAAAACAAAAATCGGAGTAGGGACTTGATCTGTTGTAGGC
GCTGCTGAAGCCCGAGCTACAGCTGTCATGTCACTAATCTTTCCTCGATTTTCTTGTTCTCTTGC
AGATCCTCATAATTAGGCACCGCATATAAGATTAGCCCGTGTCAACCTGAAGGAATAGTCGTCTT
GGGCAGTCACTCTTTCGGAAACCATATCTCCTGTTGATACGAGGCAATGAATGAATGTGAATTTG
GATTCTATATAAGCTATGCTGCGTATCGCACGCTTGTTATATTAG
Right flanking sequence: Indices 368984 -- 369483
GTACAACACTCACTCTTCTTCCTGAAAGCGTCCGTTCACAGAGGTTGTTGTAGTTTTTGTAGTTG
CAATAATTTCTTTTTTTTCATCGAGATTGGGTTGGTGTTTTTCGTATCGAAATTGGATCGCCCTT
TCTCGTACTGTATCGTATCATACGATTCTTTCAGACGAATCTATTCATTTTTTCTAGGTGGAAAA
CCTTAGACTCTGGCTTCTCCGCCTTCCTTTAGTCAGGAATCGAGTCAGGCCGTTCCCAATCCTGT
ATGTGACCTTCCCCGGAAGTCCCTCCAGCTTGTCTGGTTTACCGGGCTAACTATTCACTGATTCC
AGATTTCCCCTGCTGGGCTCGGAAGTCAAAGTCCCCACGCCATTCAACGACACGAGGTAATCCCG
GTTCTCCCGATCTGCCTTGTAAGCCCGCTAACTCCTACGCCATTCCCGGTCGCCCGGTATGGGCA
GTTTACTTCCTATCTAGTCGCTCTAGTAGCTAGCTATCGTATCCG
Found at i:435422 original size:21 final size:21
Alignment explanation
Indices: 435398--435466 Score: 97
Period size: 21 Copynumber: 3.4 Consensus size: 21
435388 GATGGGCGAG
435398 ATGCGCAGGTAGATGAGCCAT
1 ATGCGCAGGTAGATGAGCCAT
*
435419 ATGCGCAGGTAGAAGAGCCAT
1 ATGCGCAGGTAGATGAGCCAT
* *
435440 ATGCGCAGGT--ATGGGCGAT
1 ATGCGCAGGTAGATGAGCCAT
435459 ATGCGCAG
1 ATGCGCAG
435467 TAGGTTGTTA
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
19 14 0.32
21 30 0.68
ACGTcount: A:0.28, C:0.19, G:0.36, T:0.17
Consensus pattern (21 bp):
ATGCGCAGGTAGATGAGCCAT
Left flanking sequence: Indices 434898 -- 435397
TCTAGTAGAGGTGTCGTTTCCAATGATGTGACGAATCAAGGGTTTAGCTTTGTCTCTTACTCGGA
GAAGACCTCTCCAGCCCCAAGAAGAACTATGGTGCGGATTGACCTCCCAAATGGACGTTCCTTTT
ATATATTTATCATTGACCCAGTCTGTCCAGAGAGATTTCCTTTTGCTGGCTATGAGCCAAAGTTG
CTTCACATGAGAGCTGCTGTGTTCCAGTCTTCCAATCTTCTTATTCCCAATCCCCCTTCTTTCCT
TTCTTGGGTTTGCAAACAGTATTCCAGCTGATGGGATGGAGTTTACGCTGGTCAATCTTGCCACT
CCAAAGGAACTTGCTTAGCATACTTTCAATCTTGTGAAGGACACCTTTGGGCATTTCAAAAGCTG
AAGACCAGCAAGCAGCTGAAAAGCCGTTGCGCGCTAGCGCGCGCAACTTGGTATTAATTAGTTTT
TCAGCTCCTCAAGGCGAGTCAGTTGCGCGGGTAAAGATGGGCGAG
Right flanking sequence: Indices 435467 -- 435966
TAGGTTGTTATATGTGACACTGCCTTAGTCTCGAAGACCTACCCTCCCCTCGCTATTCAGAGCGA
GATGCGCATAGCGAGACTGAATCATTCTTAGGAAAGCGTTCAAGTTGTTGTTTGATATAATCGGT
GGAGAACATTCACAACTCATTCTTTATATCTTTGATTCTTGAAACTGATATACTTTTGAGAAAAT
CTTATATCAAAAGCACGACTTTCGAGTCACGACTTGCGAGTTACAGGTTTTAGGAAAAGCGAGAG
TCTCCGTCGTGAGGTTAGGTCCGGCTCTACCGAAATTTGAATGCCGCAGCTTAGCTGCCAAGGTA
AATAAAGTATCCGTGAACGAGTCAAGCTAAGCAAGGGGGCGGGGGTACCTATATCTACCCAGCCA
GGTGTGAGTTCTTTCAGCTTTTTCCAGATAAAGGGCTTTGTTTGAAAGAATCTGTCTTCCTTAGC
GAGTAGCTGCTGGTTTTCAATCCTCCCATTGATCGAGCGAGTTCC
Found at i:455301 original size:22 final size:22
Alignment explanation
Indices: 455273--455318 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
455263 TGTCGTCCAG
455273 CGGAGCCTAGAAGAAGGTGACT
1 CGGAGCCTAGAAGAAGGTGACT
455295 CGGAGCCTAGAAGAAGGTGACT
1 CGGAGCCTAGAAGAAGGTGACT
455317 CG
1 CG
455319 CGCAGACAGC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.37, T:0.13
Consensus pattern (22 bp):
CGGAGCCTAGAAGAAGGTGACT
Left flanking sequence: Indices 454773 -- 455272
TTCCTTGAGTTTGATTGCAGGGGCGCGCGTTAGCGCTTTACTAATATAATATATAGGGCTTTTTT
TGCTTGTTTAGTAAAGTCACGCTTTTCATTTTGATAGGAGTAGGCGCTTGCTGGGGCGGGGCACT
CTTAATTCTTCATTCGAAACTCATGAATGTCGGGTCGGGGCTTTCTGCCTTGTTATCAAAAAGGG
GGTTGGGTAAAGCAAACTCCCTCCTTGGACGAGCACGGGGCTTAGTCAAGTAGAACCGGGTTGCG
CTGCTTGATGCTCCGATCGAAAACAAATCCGTGGGGCCATGCCGGTACGACTGAATATGCGTTAG
AAAGGTCAATCCCTCCCCTACGACACCAAAAAAAACCGGGCCGAACTTCTAACAGCCCGCCCGCT
TCCATAAAACAATATCGTGGCAACGTAGACCTAAGTGGTCATATTGGATCCTTGGGAACCATCAC
AAGTACGGCCGGCCTATATTTGAACGAGAATGCCGTGTCGTCCAG
Right flanking sequence: Indices 455319 -- 455818
CGCAGACAGCGGACTCCTTTTCAATAGATAGAAAGGAATAGCCAAACCAACCCAGCTGGCTGGTC
AATCTCAGAGATCTTATCGGCCGGCAAACCGGAGACGGACGACCACAGTCCCGACCTTACCAGCA
CCGGAGGTGTACTAATCAATGAACCCCCGAAACCTACTTTCTTTTCTGACAAAATAAACCCCGGT
CACGACATATTGTTAATATTGATTGAGTTTGAGGGACTTTCGCTGACTGAATCCATCCATAAACC
TAGACCCCGGTAACCTTCGTAACCAAAGCGTCACGACAACATCCTTTTTTAAGGGTCACCTTTGG
ATTCTTAAGTAGGGGGGCAAGGAGGAGCACGTAGGAATGCCGACCACTACATAAGCCACTAGTGG
CTGAGAGAAAGCGAGCAGCACCTTGTATAGGTTGGGCGGAGCTTGAAGAAGCGAGCCCCTCTCAG
AGAAAGCCATTGCGCGCTAGCCTAGCTAGCTAACGTTTTTCAGCT
Found at i:466095 original size:15 final size:15
Alignment explanation
Indices: 466075--466105 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
466065 ACACCATTTC
466075 TTTGTGAATGCTCTT
1 TTTGTGAATGCTCTT
466090 TTTGTGAATGCTCTT
1 TTTGTGAATGCTCTT
466105 T
1 T
466106 GGCGCGCTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.13, G:0.19, T:0.55
Consensus pattern (15 bp):
TTTGTGAATGCTCTT
Left flanking sequence: Indices 465575 -- 466074
CGAACCCTTATTGATTGCGCCAAACATTGCTTTAGAGGCTCTTACTAGATAGGGCGGCGGAATAG
AGGTATCACTACTAGCTTTTAGTTTTAAGCAGGAAGCGGCGGTAGGGAATGAATGTTCTACTCTA
CTGTCAGCCATTTCATTCTCATTCGGACTGATTCGTCTTTTTTTTTCTAGCTTGATTGCGGGAAA
GGTCAGCTGAAAGACGGTATATCTTAATTCAAGCCTATTCCTTTGTGGCTGGCCCCAGTGCTTAA
CGTCAGGTTGCCTCCACATATGAAAAGTAAGCCAGCCGTATTAGCTCATCAACTCGCCTTAACGC
ACCGTCACTATATAGGGCCGGACTTGCGTACGGTATCACTTGCCTAACAGCTGCCAAAAGCGGAA
GCTTCCATGTTGACGGGCTTATTGTCTCCTTTCTAAAGGGAAAATCAGAGAAGAAAAACTCCTCG
GGCAGTCGCTAACCGTTGCGACTTCCCTTTCGCTTACACCATTTC
Right flanking sequence: Indices 466106 -- 466605
GGCGCGCTACTTCCGCTAGCAACCAGCTTCGGATTCTCCTTAAGGCACCGTGTTCAGTAGGGATT
TGAATAGAAACTCTATTTTGGGGCTCAATGTTGCTGGACTCTACTCCTCCCCGGGGGCTATGCCC
AAAGCTTCAACCCCTAATGGATTAGCCGAGACGAACAGCCCTCTCTATCTCCCTAGTGGTCGATC
CCCTCCCAGGCCTTGCAGTCGACTCTTTACAGAGCCTTGACTTCTTCGATCGGAACGGAAGGAAG
GGACCTTTCTTTTCATGAGATCCCTGGTCAAGAGTTTGTGCCAATTTGTGAATTCAAATGAAAGC
TTAAAAACGGGAGCTATTGGTGCGGTGAAACTTTTACAATTTACCGAGAAGCGTTACATTTTATA
CATTTTTATAGAGCTTTCGAATAACGAAATACGACTTACAAACCCTATTGAAGAAGATTGGCTCT
CATGTTAGCAGTGCTCTTTCCTAAGTGCACAAAGAAAGGTAACTA
Found at i:500557 original size:16 final size:16
Alignment explanation
Indices: 500536--500568 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
500526 AAGCGCTACG
500536 TGATCTTCGACCACCC
1 TGATCTTCGACCACCC
500552 TGATCTTCGACCACCC
1 TGATCTTCGACCACCC
500568 T
1 T
500569 TTGCCTTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.42, G:0.12, T:0.27
Consensus pattern (16 bp):
TGATCTTCGACCACCC
Left flanking sequence: Indices 500036 -- 500535
TTGTTCGAATTCTACACCATCCCCCGTCGCTGTCTGGAACGAGAATTCATTGTCATCCTCCTTAG
CCGATTGCTCACTATCAACTATTTAATCCTTCTCAGACATCTTCTCCTCCTTGATAACCGGACTA
ACCACTTCAGGCTGCACAATAGAGATCGAGATAGCCTCGTGAGCGTGATTCTGAGTCTCGTGGTT
GAGATCCGTGAGCGAGACCTAAGCAGGAGAAACAAAGGTAGAAGGAGCAGAGAGGCAGCAGCACT
TCTTTCTCCGCTGCTATATCAAGATGGTTTATAGCATCATATATAGAGCCAAGGGCAGCTTTCCT
TCACGTAGTTCCACTAGCTTCAGTAACATCTCGATACCCGGGCTAGTAGATGCATACCAATATGA
CTAGTTAGGGCGATCCAGCGGGAGCGCTATATGTTACCTTTGACTCTGCTGTCTCCACCTATGCT
TGCTCTGATGCGGGCAAGTAGCAAGACGCCATATCAAGCGCTACG
Right flanking sequence: Indices 500569 -- 501068
TTGCCTTTCTTCGCTGGTTCACGCACGGGTGGTTGGTTATGAATCACATCACAAAATGGGAATCA
AGCGCTTCAACTGGTAAACTTGAGCTCTGGAACTAGCACTATGAGTGCCTCTGCTAGCTATGGCT
CTTCAACCCTTGCCGGTTTGTTGAAGTAAGTGGAAAGCGAATGCACAGCGCTTCTACTCACATGT
CGGAGCATATCAGTAATAACACAAGCGAAGACCAAAACAAGGGCAGACGCGAGTGCACACAAAAT
CTACATTTTATTATCTACACTACCTTAGAGTAAGCTAATGCCTTCACTCCATTTCTTGGAAAAAA
TCCAACGGGGCATCACAAACGAACAAGGGCGGATATCGATAAATTGGGAATGACAGAACATCGCT
TCTAAGAACTAATGGCAACGTATACTTACTTATACAGAATGGGCTTACCCATTTTTCCCAAATGC
TGACAGCTCCGATGCATGCGTGCGTGAGCGGCCTCAGGCCTCGGG
Found at i:506672 original size:23 final size:24
Alignment explanation
Indices: 506639--506691 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
506629 CCCGAACTTG
*
506639 AGTCTCCTTCCG-TCAGCTGACTA
1 AGTCTCATTCCGTTCAGCTGACTA
506662 AGTCTCATTCCGTTCAGCTGACTA
1 AGTCTCATTCCGTTCAGCTGACTA
506686 AGTCTC
1 AGTCTC
506692 GCAGGGAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 11 0.39
24 17 0.61
ACGTcount: A:0.19, C:0.32, G:0.17, T:0.32
Consensus pattern (24 bp):
AGTCTCATTCCGTTCAGCTGACTA
Left flanking sequence: Indices 506139 -- 506638
CTGCTGCTCCCGCTATTCCCAAGCCAGCCATTCAAGATGAAAGGGCAGCCAAGCTCAGTATTCCA
TCCCTAGCCTAGCTTCGATCCCTTACCTTAAGCCAAGAAATCCTCCTTTGCAAAGAAATCCCGCC
CTACCGACAGGTGGACTGGTGCAGCTAGCTTAGCAGCGCAGCCGCTTCTTTATAGTGTTCTGAAG
CTTATGGGCAACCCTTATAATTCAGGATCCAAGAAAGGCCTAATTGACTCATCCATCTCGAAATG
TCCAATCCACTCCTTTTGCCTATCCCGCCTCTTCCTTCTGCGCTTACCTCTTTGCCACCGGCTCG
CCGAAATTAGGGTTGTAAGCAAAAAGACAGGGTTTGAAGACACTTTCCAATCCGATACCAGCGCT
AGCGCACTAGGGCTTTCAAACAGCAAACGTAGGCACGTAGCTGATAGTTCCGTGGAGGCCGCCTT
GAAGGTCTTTCGCAAGCTAGTAGGAGTACGCTCATCCCGAACTTG
Right flanking sequence: Indices 506692 -- 507191
GCAGGGAAATCAAGAAAGGCTCTTTTCGGTCTCTTTTTCAAAACTTTCTATCTAATATATGTGAA
AAAGCACTCAAAGAGTGACAATCCGAGACCTCTCTCAGAGCGGAAACAGCCTGGTGTCGAAAAAA
CACGGGTTTACAGAAAAAGTAACAAAACGAGACCCGAAATAGCTTTCAAAAATCCCCGGGTTCAC
TCAAAAAGTTCCTGTTTAAACCTGCTCTCAGAACGGAAAACCATTTGCTATGAAAAAGACGGGAT
TTGAGAAAGGATACGCGGAACCTGCTACCCTCGATTCCAGCCCACTGTTCGGGAACAGTCCTCCA
TTCCTGATCCAAATGCCCAATCCTGCTCTGATTGATATGGTAGCTTTCTTTTCGGAAAGCAGATG
GCACTACTCTTCCTACTTACTACTATCAGCAGACGAAATTGCAGACTCATTCTCGTATGGGGTTC
GTGTTGAGTAAGACAGGAGTTCGGAACTAGACCACGTCTGTCTGA
Found at i:526312 original size:21 final size:21
Alignment explanation
Indices: 526286--526326 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
526276 AAACGCCTAC
526286 GAAAAGATCGCTTGGATTTAA
1 GAAAAGATCGCTTGGATTTAA
*
526307 GAAAAGGTCGCTTGGATTTA
1 GAAAAGATCGCTTGGATTTA
526327 TCCATGGTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.34, C:0.10, G:0.27, T:0.29
Consensus pattern (21 bp):
GAAAAGATCGCTTGGATTTAA
Left flanking sequence: Indices 525786 -- 526285
AATGGAGTTCCCCGGAGAATGAACTCCGGGAAGGTAGATTATAAATTAGTATGAAAAAATATGAT
AAAGTCGTAAAAATGAAGGAATATGTTCAATAAAAAAAAAGATTTCTTCTTCTTCCCCGATTATT
TTTGTTTCTTACAACACAACAATCAAATCTCGATTCTTAGATTTTTCGAACAAAACATCAAATCC
GCGTTTGAGTTCGAATTGGAATTTCGATTCAATTGAAGAGTAAGCCTATTTATTTCTGGTTCTAA
GACCAGTAGTTCTAGCGGTCGACTCGGTTCTTTCAAATTGTTTCTCATTATTAAGAAAAGGTAAC
GAAGATAAAATACGAGCTTGTTTTATAGCAATAGTAATTAATCGTTGTTGTTTCAAAGTCAATCT
ATTCACTCGTCTAGATAATATTTTTCCTTGTTCACTAATAAATCGACTAATTAAACTCATGTTTC
TATAATCAATTCGATCCCCCGATTGGATCGGGGGCAAACGCCTAC
Right flanking sequence: Indices 526327 -- 526826
TCCATGGTTTGTTTATTCCTTATCCCGAAAATCCTATTTCGTTCGGATCAAAAATGAATTAGAAT
TCAGAAATAGGATTTGGTTTATTTCTATTTAAATATATGTTATATATAGTATATATTTATTTATA
CTAAATTATATTACTATATTATTTTTACTGTTCCTTGGAAGGGTGACACACAGGCCCTCGGTTCG
ATCTATTTTTTTATCTCCCCATGAATCGTATGTTTATAACAATAGGGACAGAATTTTTGCAATTC
CAATCGACCGGGCGTATTGTGTCGATTTTTTTCAGTAATATATCTGGAAATGCCTGTTGATTCCT
TATTAACACCGTCTCGTACACAACTAGTACATTCCAAAAGAACCCTTATTCGGGCATCTTTACTC
TTGGCCATGAACCTCCTTTGTTTTTTTTTTTTTCATTCAAGTCTTCTATTTTCGATCCGAAGAAA
GTAAGGAAAAAAAATAGAAGTTGCTAACTCAAAATCCAATTATGA
Found at i:541874 original size:43 final size:43
Alignment explanation
Indices: 541825--541914 Score: 171
Period size: 43 Copynumber: 2.1 Consensus size: 43
541815 CTACGATCAG
541825 GCTGGTCGGAACGATCAGGGTGCTCCCCTACGATCTTAGGCAA
1 GCTGGTCGGAACGATCAGGGTGCTCCCCTACGATCTTAGGCAA
*
541868 GCTGGTCGGAACGATCAGGGTGCTCCCCTACGATCTTAGGCAG
1 GCTGGTCGGAACGATCAGGGTGCTCCCCTACGATCTTAGGCAA
541911 GCTG
1 GCTG
541915 ATCTTTGATA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 46 1.00
ACGTcount: A:0.19, C:0.28, G:0.32, T:0.21
Consensus pattern (43 bp):
GCTGGTCGGAACGATCAGGGTGCTCCCCTACGATCTTAGGCAA
Left flanking sequence: Indices 541325 -- 541824
TGGCGAGATCCAACGGTGAACAGCTGCCCAAAAGAAAAACCGCCTGGAAGTCCGAGGACCTTTAG
TACCGTACCCTACCCTCGAACCAGCAGCCTTCGCGCCAAGCAAGACCGCCCTTGTCCCTTTCCTT
TCTCCATTCCGCCTCCTTCTTTGCTTTGTTCCAATAGAGTCTAAGGCAAAGCTAAAGTGGTTCGT
ATGCCTACTTTACCTACTTGACGAAAGGGAACGAACTTAGTTTCGTTTCCGGGTTTATGGATTGG
ATTCAGTCAGCGTCACGACATAATCAAAAGGAAGGAATGACGCCCGGCGAACGCTTCCAAAGTTT
CTCGAGTTTCCGGCTGTTTCCTAGATTGAAGTAGCCTTTCGTCGCCCTACCAAACGAAAGAAGTC
ACTATCAAACAGCTCGCCCTACTGAAGTACCAAAGGTGCGCTCCGCCCGGTGACTAAGAAATAAA
TTGGTTTGCGCTTTCATTGAAGTGATGAGGGTGATCTACGATCAG
Right flanking sequence: Indices 541915 -- 542414
ATCTTTGATAAGAAGTGGTCGTAGATCATTTTATTTGTTTTTCATCGAAAACGAAGAAGGCCGAG
GATGGCCTACGGTGCGTGTTATCTGAAGGGAACACGCTTTTTCGACCGCGGTGGTATGATTGCCG
GGCCCTCTCCTCGTTCCGCCCGCTGGCCTATTGGGATAGCTGCCTTCGGGCTTTGCCTGCCCTTT
ATAATAAAGAATTCCGGCTCGGCCCGGGAAAGCGCTGGCAACAACAGAAAGGAAGGGGTCCATGT
AGCTGCTGCGCCCGCCCCCTTCTTAGTCAATGGGGCAGCAGGTTCGGCATCTACTATAAAAGAGA
GAATCCACTTCAGATAACCACGCCTCTGCTAGGCAGCGTGTGGAATGGCCGAGAGCGGACCTTTT
TGGATATATAATCCAAGTCGAGAGTGGAGTTACGGGAACAGCCGTCTGATGGAAAACGACTTTCA
CGTTCGGTTCAGAGAGCACTTTTTTCGTTGAGAATTCCTCGTTCC
Found at i:566425 original size:33 final size:35
Alignment explanation
Indices: 566380--566472 Score: 111
Period size: 33 Copynumber: 2.7 Consensus size: 35
566370 CCTGATCTAC
566380 GACCACTTCTGATCAAAGATCAGCCCTCTC-CT-A
1 GACCACTTCTGATCAAAGATCAGCCCTCTCGCTCA
* ** * *
566413 GAGCACTTCTGATCTTCA-ATCAGCCCTCTCGTTCC
1 GACCACTTCTGATC-AAAGATCAGCCCTCTCGCTCA
566448 GACCACTTCTGATCAAAGATCAGCC
1 GACCACTTCTGATCAAAGATCAGCC
566473 TGATCTACGA
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
33 25 0.52
34 3 0.06
35 20 0.42
ACGTcount: A:0.25, C:0.35, G:0.14, T:0.26
Consensus pattern (35 bp):
GACCACTTCTGATCAAAGATCAGCCCTCTCGCTCA
Left flanking sequence: Indices 565880 -- 566379
AAGAGGGAAAACAATAAGAATGAACAAAGGGTGGTCGAAGATCAGGGATTTCCAAGTACTTCTTT
CAATAGCATTTGGTATTAGAACTCTCGTTAAAAGGCTTTATAGAAGCTTAAGGTATTTTGAAAGA
TAAGATAAACGCTATCTAAGGCCACTATTCCTGACCTTAGGAAGGAATAGAGTAAGGGAAGGGGC
AACTGCTTGAGTGTTAGAATCTTTCGTTAAAGAATTAGATATGGTGCACCTTTTAAAGATAAAAA
ATAAAAGAAAAAAGAACAAAATAACCCAGCGGCTTAATAGCCGAGTGGCTTAAGACATTGATTGG
TTTGCTGAATCGAAAAGAAAATTGTATCATGGGGAAATCCCCAGCCCCTACCCTACCTAATTTGC
CTCTTGTTTAACAAAGTGGATGAACCCCCCTTCGTCAACAGACAAGAGACCACCGAGACATGAAA
TTGGGAAGCCGCCCCTCACTATATAAATTTGTTTTCCTGATCTAC
Right flanking sequence: Indices 566473 -- 566972
TGATCTACGACCACCCTTAAGATATTTTCTATTTTATCAACAGAAGCGAGAACTGATGCAGCACT
CTGACTTTGCTGCGTAATAGCGAAAATTGCTGCATGCAAAAACCGAGCATAATTTATACTTGGAA
AGAGATTGATGATTTCTCGATCGAAGTCATCCAAGTATAAATAAAATAAGACGTTGGTGAGAAGG
CCCACCACTGGAATTCCCGAATCTATGGACCAATCCCTTTGATTTTAATCCAAAAGGGAGAAGTT
CAGAAAGGATGAAACGAGCTGAAAAAGAAAAGGATCATTCAGCACGGGTCTGACTTTGGTCACAA
GACGGAAACGACTAAGCGTGTTCAAAGAAGGAGTCAAATCGAAATAGAGAAGCATGTTGACCTTA
CCACAATTTCGCACTTCATCGTAAAACGCATTAATTCCCCCCCCTTTTTTTTTAAGGCGAAAGAA
TGCTCCAAAAATGCACCATAAGAATCAAGGGTCAGACTTAAAACA
Found at i:570476 original size:18 final size:18
Alignment explanation
Indices: 570455--570497 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
570445 CAACCTTGTT
570455 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
570473 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
570491 GACTATG
1 GACTATG
570498 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 569955 -- 570454
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 570498 -- 570997
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTG
AAGATTCAAAAGGCGAGCACTGAAATGAGAAAGGCTTGTAGACTCGTGACGTTGAACGACACATT
CTAAAACGAAAGCGCACACTAGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCC
CGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACAAAA
AGTGTCCGCCCCTTAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTTGCGTA
GGGCGACCGGGCCAGGCCGAGTCTGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAG
AGTGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGT
TCTGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACG
Found at i:582153 original size:33 final size:33
Alignment explanation
Indices: 582115--582179 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
582105 GGTGGTCGGA
582115 ACGAGAAGGCTGATCTTTGATCAGAAGTGGTCT
1 ACGAGAAGGCTGATCTTTGATCAGAAGTGGTCT
*
582148 ACGAGAGGGCTGATCTTTGATCAGAAGTGGTC
1 ACGAGAAGGCTGATCTTTGATCAGAAGTGGTC
582180 GTAGATCATA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.26, C:0.15, G:0.32, T:0.26
Consensus pattern (33 bp):
ACGAGAAGGCTGATCTTTGATCAGAAGTGGTCT
Left flanking sequence: Indices 581615 -- 582114
CTTGCCCACCCCACCTCACCGCGGGTAGCCAACTTCAGCTCACCCTAGGAACCTTTAAGGTTAGA
CTTAAGCTTGAGGTGCAGTAACATGAAGACATTCCTTGGAAGGTTGCTTAGCTGGAAATTTATTA
CTTGAAATAGGTAACTTCGTCTGGTAGCAGAGCTGCCTCCGAAGAAGACAACTTACGAAAGAGGA
CTCTCTACGGAATGGGAGAATCCAGCTATTGAATATAACAAAGTGAAGCAGGACTGCACTCGCTA
CGCAGTTGAATAGACAGGAAGACAAGAAGCAAGGGCTGGTGGGCTGGTAAACTCGTTCCGCAGAC
TTATCGAGGCGATATTTTATACTAAATACCAATCGATCGAAATCAATCCTTCGGAGGCTCTAAAG
GTAAGGCAAAAAGGCATAATTCGATGCTCCAACTAAAGGAAAAGCCATAAAGCACAAACCAAGAT
CCATAACATAATACTAAAACCAAAATGAGAATGAGGGTGGTCGGA
Right flanking sequence: Indices 582180 -- 582679
GTAGATCATAGGTAAGGCAAAGCGCTTTCTTTTAAGAATGCATCTGGTTCCATCTTTCTTTCGTT
AGTTAACCCACCCTTTTCTAAAAGGGATTGTAGAAATTCTGGTTTTATACTACTTGGAATGGCTC
TCTCATATTGAGAAATTCTGTCTAGTGGCATTCGATCACAGAATCCATTGACAGCTGCATAAATG
ACTAGAATTTGTTTTTCAATTGGAAGTGGTGCATATTGTGGTTGTTTCGAGACTTCTGTAAGCCT
TGCACCTCTATTGAGTAATGCCTGAGTCGCAGCATCAAGGTCTGACCCAAATTGAGCAAGGGCGG
CCACTTCGCGATATTGTGCCAATTCCAGTTTTGAACTACCGCAGACTTGTTTCATAGCTTTCAAC
TGAGCGGCAGACCCGACGCGACTGACAGATAAGCCGACGTTAATAGCAGGTCTAATTCCGCGATA
AAAGAGCTCTGTTTCCGAACAGATTTGTCCATCCGTAATGGGGAT
Found at i:590884 original size:2 final size:2
Alignment explanation
Indices: 590877--590926 Score: 68
Period size: 2 Copynumber: 25.5 Consensus size: 2
590867 CCACTTATGC
*
590877 TA TA TA TA TA TA TA TA TA TA TA T- TT TA -A TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
590917 TA TA CTA TA T
1 TA TA -TA TA T
590927 TTGATATAGG
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
1 2 0.05
2 40 0.91
3 2 0.05
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 590377 -- 590876
CATTCAATCCATAGCAAATGAGGCATTTTTTCGAGACTTTGGAAAGGACTGGCCCATGAGAGACA
TTTCAGACACCTTCTCACTAAGGAGAAATTTCCAATAGATCGAATCAACTTCCCTAGCTAAACAA
CCAACGGACGGATGAAGAAGACAGAGCAGACCGATGAGCGTTTGCCCAATACAGCTCGACCGGGA
TATTTGATTGGACAGAAGACCGGTTGGCCGGAGATCAAGATGAAAGGAATTTCCTCTCTAAAAAG
AACTCAACGGACGTACCAGAAAGCGAGGTACGTACCAGTAGAAGATATCTTATTTGAAAGCGAAA
AATCGGAAACCGAAGAAGCGAAAGCGCCTAACTCAACCGCCGACCCTGTTCTGCCTACTACTACA
GTTGGCTATTCCAAATCATCATTCACCAGAAATCCGCACCTCCTGCACGTACTTACGAATCAATT
TCCCTCCCCACCTACTTCATGGTGGCTACCATCTCCCACTTATGC
Right flanking sequence: Indices 590927 -- 591426
TTGATATAGGGTTAATTTACCTATAATACCGGATGATCATAATATCGTGTAAACTCGGCTCATAA
ATGTGAAATTGATCTTCTTCCAGGGCATGAACGGGACCGATGCCACTCCCAAAAGAAGTAAGGAA
TGCGCCTGGTTTGGGGTATATTACATACAAAAAAAAGCATTCTTCTTTCGCCGCAGCCGCACCTC
CGTACTCTGATTTGACAGCTCTATAGTGGAGAATGAATTTGAGATTTATCCAGCCAAGGCAATCA
AATCACTGATATGCCACCATCCCCCTATAATATGGATAGGGGGAATTCGAGTCATCGATGAAATC
CACACCCACACACCAAGGGAGAGATGAGAAAGGTAAAGGAGCCATAAGGTGGACAAAGACGTTGT
TTGCAAGAATACGGTTTAGGACTTTTGAATAAGGCTACGCTCCTTCAAGCCTTTGAAACTACCCC
GGTTGTATGAAAGTTCTGTGATCACTTTACGACAATCTTTCTAGA
Found at i:590934 original size:26 final size:26
Alignment explanation
Indices: 590878--590928 Score: 93
Period size: 26 Copynumber: 1.9 Consensus size: 26
590868 CACTTATGCT
590878 ATATATATATATATATATATATTTTA
1 ATATATATATATATATATATATTTTA
590904 ATATATATATATATATACTATATTT
1 ATATATATATATATATA-TATATTT
590929 GATATAGGGT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (26 bp):
ATATATATATATATATATATATTTTA
Left flanking sequence: Indices 590378 -- 590877
ATTCAATCCATAGCAAATGAGGCATTTTTTCGAGACTTTGGAAAGGACTGGCCCATGAGAGACAT
TTCAGACACCTTCTCACTAAGGAGAAATTTCCAATAGATCGAATCAACTTCCCTAGCTAAACAAC
CAACGGACGGATGAAGAAGACAGAGCAGACCGATGAGCGTTTGCCCAATACAGCTCGACCGGGAT
ATTTGATTGGACAGAAGACCGGTTGGCCGGAGATCAAGATGAAAGGAATTTCCTCTCTAAAAAGA
ACTCAACGGACGTACCAGAAAGCGAGGTACGTACCAGTAGAAGATATCTTATTTGAAAGCGAAAA
ATCGGAAACCGAAGAAGCGAAAGCGCCTAACTCAACCGCCGACCCTGTTCTGCCTACTACTACAG
TTGGCTATTCCAAATCATCATTCACCAGAAATCCGCACCTCCTGCACGTACTTACGAATCAATTT
CCCTCCCCACCTACTTCATGGTGGCTACCATCTCCCACTTATGCT
Right flanking sequence: Indices 590929 -- 591428
GATATAGGGTTAATTTACCTATAATACCGGATGATCATAATATCGTGTAAACTCGGCTCATAAAT
GTGAAATTGATCTTCTTCCAGGGCATGAACGGGACCGATGCCACTCCCAAAAGAAGTAAGGAATG
CGCCTGGTTTGGGGTATATTACATACAAAAAAAAGCATTCTTCTTTCGCCGCAGCCGCACCTCCG
TACTCTGATTTGACAGCTCTATAGTGGAGAATGAATTTGAGATTTATCCAGCCAAGGCAATCAAA
TCACTGATATGCCACCATCCCCCTATAATATGGATAGGGGGAATTCGAGTCATCGATGAAATCCA
CACCCACACACCAAGGGAGAGATGAGAAAGGTAAAGGAGCCATAAGGTGGACAAAGACGTTGTTT
GCAAGAATACGGTTTAGGACTTTTGAATAAGGCTACGCTCCTTCAAGCCTTTGAAACTACCCCGG
TTGTATGAAAGTTCTGTGATCACTTTACGACAATCTTTCTAGAGC
Found at i:610431 original size:39 final size:39
Alignment explanation
Indices: 610376--610454 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
610366 CCCATCCTTC
*
610376 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
610415 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
610454 A
1 A
610455 TAGAAAATCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 609876 -- 610375
TAGTAGAATATATCTCTCAGCGATTCTTTTCTCCGCTAATCACCCCTTCCCAACCAGCCCGCCCG
ATCGATTTTGTAAGATCGGCTAATTCAAAGGGGTTAATCTGGTCCGAAGTTGTCGGAACGAATCG
TTTGCTTTATCGAACAAAGCGGGGGTCTTGGTTGGCCCCCTATTTTCAACCATTACAGCTGGCGT
CGACCAGCTTTGCGATACGGACGGACACGAAGAAGAAGGCAGGCAGCGGAAATGCAAAAGAGAAG
AGCAAAGATTCCCGACCCAGAGCATGTTATTGACTCAACCACAAATCTGTTGAATGAAGGCCGTT
TAGGGCTTACTCTCAGCCACTAGTTAGAAGGAAATCCCGTGATCTACGACCACCCTTATGCAGTA
AAGAAAGCAAGTGAGGCGGGCTAAGATTCCTAACGTAACAGGATTCGATGTTGCACTATCTTCAA
CTCTTCTCGGGATCCGGAGTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 610455 -- 610954
TAGAAAATCGAAAATGTCAATAGCAGTTGCTGTTCCAGCTGAAATACTTGGAATAATTCTACCAC
TTCTACTAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGA
AAGGGTCCTGATGTAGTGGGATCGTTCGGATTGTTACAACCTCTAGCAGATGGTTCGAAATTGAT
TCTAAAAGAACCTATTTCACCAAGTAGTGCAAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTA
CATTTATGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGAT
CCGAACATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTACAGC
AGGTCGGTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAA
AATGGGTTTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGT
Found at i:611129 original size:2 final size:2
Alignment explanation
Indices: 611122--611236 Score: 83
Period size: 2 Copynumber: 63.0 Consensus size: 2
611112 CAAGCTGGCC
611122 TA TA TA TA TA TA TA TA TA TA T- TA T- TA T- TA -A TA TA TCA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T-A TA
* * * *
611160 AA TA TA TA AA TA TA TA TA T- TA -A TA AA TA TA TT TA T- TA -A
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
611198 TA TA TA TA AA GA TA TA TA T- TA -A T- TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
611237 ATTATTATAA
Statistics
Matches: 90, Mismatches: 10, Indels: 26
0.71 0.08 0.21
Matches are distributed among these distances:
1 12 0.13
2 77 0.86
3 1 0.01
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 610622 -- 611121
AACCTCTAGCAGATGGTTCGAAATTGATTCTAAAAGAACCTATTTCACCAAGTAGTGCAAATTTC
TCCCTTTTTAGAATGGCTCCAGTGGCTACATTTATGTTAAGTCTGGTCGCTCGGGCCGTTGTACC
TTTTGATTATGGTATGGTATTGTCAGATCCGAACATAGGGCTACTTTATTTGTTTGCCATATCTT
CGCTAGGTGTTTATGGAATTATTACAGCAGGTCGGTCTAGTAATTAGGGGGCGGCCGTTCGGTCG
CCTATGATACTAGGACCAATAGGTCAAAAATGGGTTTGTGCCGCAGGTGTTGAACGATCTACTCT
ACACAGGTGTGGGCTTACAGGGCTAGGGCTCATAAACCCTTTCTTTCATTCTCTGATCTACGACC
ACCCTGGTCGGTCACTTTTCCGGGCCGGGATCGATAAGTGGAAGTCATAAAAAAGAGATGTTTCT
CTTCACACCTCAGATCAAGAGGAAGGGTAGCTTGTCAAGCTGGCC
Right flanking sequence: Indices 611237 -- 611736
ATTATTATAAATAATAAGAAGATAGAAATAAAAAGATTCGCTATCTTTTAACCGGCTGTTTTTCT
TTGTCAACGCTACTAAGGACCTATAGGTTCACCTACTTCACTTATGAAAGATAATGATAATGGGT
TATTCAAAAAGGAAAGCTACTTAGCCCTACATTAGTATAAGTAAGCGGCTGAGTTAGCCCCTACT
AATGTATTGTATAGTAGGGTATAGTATAGTAGGCGAGCGGGTTAGCGAAGACGCTTAGGCTAATA
GATAAGAGAGCGTCGGTGCGTAGCCTTCATTCTACTACGCTACGCAAAGGTTACGAAGTCACTTA
GCTCGACGTTAGGAGAGTCAAGGGGGAACGCCATACCTACATAGAAGAACCGCTGTTCGCTGACT
TTCTAAGGTCTAACCTTTCGCTCCCCTACTGAAAAGGGGCAAAGCCGCTTCGCACCACTGATAGA
CTACTTAAGATTCAATTCAAAAGGCCCTACTTAGTTTCGCAAGCC
Found at i:611458 original size:15 final size:15
Alignment explanation
Indices: 611435--611464 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
611425 CCCTACTAAT
*
611435 GTATTGTATAGTAGG
1 GTATAGTATAGTAGG
611450 GTATAGTATAGTAGG
1 GTATAGTATAGTAGG
611465 CGAGCGGGTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.33, T:0.37
Consensus pattern (15 bp):
GTATAGTATAGTAGG
Left flanking sequence: Indices 610935 -- 611434
ACGATCTACTCTACACAGGTGTGGGCTTACAGGGCTAGGGCTCATAAACCCTTTCTTTCATTCTC
TGATCTACGACCACCCTGGTCGGTCACTTTTCCGGGCCGGGATCGATAAGTGGAAGTCATAAAAA
AGAGATGTTTCTCTTCACACCTCAGATCAAGAGGAAGGGTAGCTTGTCAAGCTGGCCTATATATA
TATATATATATATTATTATTAATATATCAAAATATATAAATATATATATTAATAAATATATTTAT
TAATATATATAAAGATATATATTAATTATATATATATATATAATTATTATAAATAATAAGAAGAT
AGAAATAAAAAGATTCGCTATCTTTTAACCGGCTGTTTTTCTTTGTCAACGCTACTAAGGACCTA
TAGGTTCACCTACTTCACTTATGAAAGATAATGATAATGGGTTATTCAAAAAGGAAAGCTACTTA
GCCCTACATTAGTATAAGTAAGCGGCTGAGTTAGCCCCTACTAAT
Right flanking sequence: Indices 611465 -- 611964
CGAGCGGGTTAGCGAAGACGCTTAGGCTAATAGATAAGAGAGCGTCGGTGCGTAGCCTTCATTCT
ACTACGCTACGCAAAGGTTACGAAGTCACTTAGCTCGACGTTAGGAGAGTCAAGGGGGAACGCCA
TACCTACATAGAAGAACCGCTGTTCGCTGACTTTCTAAGGTCTAACCTTTCGCTCCCCTACTGAA
AAGGGGCAAAGCCGCTTCGCACCACTGATAGACTACTTAAGATTCAATTCAAAAGGCCCTACTTA
GTTTCGCAAGCCTTTGTCATTTTCAGTCAACTAAGTAGGGCCTGAGGCCCCCTGCGAATCCGTAA
ATCTGAGGAGCATGCCGCAACAAAAGGATGGTCCCCTATGCATTTCATTCTTTCCGGAAGGGAAA
AAAGAATAAAGTACCCCCCATCATGGTGAACCTCTCCTTGTGATCGGGATGAGGTAGATGCCTCC
CAGCCGGGGGGCGGATCGAATCGGAGTTTCCTTAGGTAGCCACCG
Found at i:619876 original size:17 final size:17
Alignment explanation
Indices: 619821--619877 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 17
619811 ACCTGATCGA
619821 AGATCAGAAGTGGTCGT
1 AGATCAGAAGTGGTCGT
* * * *
619838 AGA-GAG-GGCTGATCGA
1 AGATCAGAAG-TGGTCGT
619854 AGATCAGAAGTGGTCGT
1 AGATCAGAAGTGGTCGT
619871 AGATCAG
1 AGATCAG
619878 CTGGGATCCC
Statistics
Matches: 29, Mismatches: 8, Indels: 6
0.67 0.19 0.14
Matches are distributed among these distances:
15 1 0.03
16 10 0.34
17 17 0.59
18 1 0.03
ACGTcount: A:0.32, C:0.12, G:0.37, T:0.19
Consensus pattern (17 bp):
AGATCAGAAGTGGTCGT
Left flanking sequence: Indices 619321 -- 619820
AGTCCTTCGCCCTAGAACTTGTAACTCTATTTTCATTGGTCGCTCCTTGATTAGAGCATGGCAAT
TCGATTAAGATTTGGCAATCAATTAAGAAGGAGCTACCCGAGCTCAAGAGGCAGCTTTTAGTCTC
TCCCCCGGGTTCTGAGAAGAGCTGGTTTATGGGGCACCGGGCTAGCTCGCAAAGAGAAGTTGAAT
CATAAAGATCGAGACTGCACTGACTGGGCTGACCTTTTAGGTCAATAGGGGTAGTTCATGCGCTT
GATTTTTCAGTCTAAGATCGAAGTCCTTCGCTCTGGAAACGGTTCGAACTTTACTAGGATATGGG
GCGCAACAACTGAACTATTTGATTAAGACTTTACCCTTCAATTGAGTATAAGTCAGCAAGCAGCT
TCCCCTCGGTCGGTTGAACCAGCAGCTTCCCCATCACCTCCTCCAGGTCAGGATGGCACCTCTTG
CAAGATTCGTATTCTTCCCAGCCTCTCGGATAAAAACCTGATCGA
Right flanking sequence: Indices 619878 -- 620377
CTGGGATCCCTTAGGATAGAGACGGAAGGTATTAAGAAATTGAATCAGGTCTTTGACGATCCAGT
ATTAGCTAGCAAGTGTATGGACTCATACTTTGATGACTCCCTAGTGTCCAGGGAAGCGTTAGCTT
CACCCTTGGAACGTATCATCTACTCTCTCTAGCTCTCGACTTGACTAGAACATTTCTTTAGCTCT
TTCGTGGGTCGGGCATCAAGAACCGGAATTGATATCACATATGCCCTTCTCTTTGGTCCATAGCT
AGCAACTCACCGTACCAAGCGCGGCAGCCTCACCCCCTCGGGAACGGAATCCTACCCTTTTGATA
TGTCAGCCAAACAGCCCAGATGGGACGAGACTAGTCCGGTCAACAGATACTAGATGATACCTCGT
ATTCAGTACTCTCAGTACTCCCAGACCAGGGCTAGTCACTTTTGATCCCCATAAGTACGACAATC
TCTCCTTCACTCGGCAGGGCACGGGCATCAGCCTTAATAAAGTAC
Found at i:630022 original size:40 final size:39
Alignment explanation
Indices: 629973--630075 Score: 120
Period size: 38 Copynumber: 2.6 Consensus size: 39
629963 TTCTTATTAG
**
629973 ATATATATAAATAAATAAATATATATATATATATTTATTT
1 ATATATAT-AATAAATAAATATATATATATATATTTATAA
* * *
630013 ATATATATAATATATATATA-ATATATATTTATTTATAA
1 ATATATATAATAAATAAATATATATATATATATTTATAA
*
630051 AGATATATAA-AAATAGAATATATAT
1 ATATATATAATAAATA-AATATATAT
630076 CTAATAGAGT
Statistics
Matches: 53, Mismatches: 8, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
37 4 0.08
38 27 0.51
39 14 0.26
40 8 0.15
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (39 bp):
ATATATATAATAAATAAATATATATATATATATTTATAA
Left flanking sequence: Indices 629473 -- 629972
ACTAGAGAACCAGATGATTCGGTCCATCTCCGATCGGAGTGCTTTAATCGTCTGATGGCATACTT
CCTATACTTGTTGAATCTTCCGAGCTGACCGGCATAAAGGCGAAAGCTTTAGCTGAATAATAATG
AATTCATTCGAGAGATGCTTACAGGACTATCACACCAGTTGCAGTTACTATGACCTTCTTCTCCT
AGGGTCTTTCACTGGTCAGGCGAATTGCCAGTAACAGCAATCTGAATGGTTAAAGCACCCAATCA
TTGACTGGTTATTGTAGGGTTAAAGGGCCTATCTATTGTATTGGTGGGGTTAGTTATCCAAGTGG
TCAAATGCGTCTAATAGAATGGGTAAAGAAAGAGTAGCAGCTGCAAGAGATTCTACAGTTGGGAT
TTTAGGATTAACCTGAACCAAACCAACCCTAAATGGAAAAACTTGGAACCTCCAACTCTCTTCTT
TGAGGATAGCTCCCCTCTTCTATTCCGGACGGGGTTTCTTATTAG
Right flanking sequence: Indices 630076 -- 630575
CTAATAGAGTCTCACTCAATATTCAAAGGATCTTTCATTGATCAGAAGGTGTTGTTTCTTTCCAT
CCCTAGGTTGCGGTTTAGAAGCACTTCATAGTTTGTTATCCGGAACTCCATTCTAAGGATGTAGC
TGCTGAATATCCAATAGTTGACTTAAGAAAAGTTCTCGGACATTATTTTCAAAGAGAAAGTTTGA
GCTATTTTTAAAGAGTAGAGTGGGTTGAGTTGGGAAGCGTCTTTCTTGAGCTTAGCAAGCGGAAG
GGGTTTCATCGGAGAGCAAACTCCCGAGATATTAGTGGCTTGATGAACTATCCCATTTTTTAAGA
TTTTTTTTTTCGTATGAAACAGATCAGCTGGTCCGAATCAATAGAATCTGGAGTTGTTCGGATGA
TTGCCCCTGCTGGGAATCGATTCATGCCAAAACGGGACTTCTTCACTTGTCAGTCGCCCGGGGCG
CTTCTTTTTTTATTTTCTTTATCCCCTTTTTTGATGGTCTCGAAC
Found at i:630042 original size:34 final size:36
Alignment explanation
Indices: 629976--630075 Score: 118
Period size: 35 Copynumber: 2.9 Consensus size: 36
629966 TTATTAGATA
629976 TATATAAATAAATAAATATATATATATATATTTATT
1 TATATAAATAAATAAATATATATATATATATTTATT
* *
630012 TATATATAT-AATATATATATA-ATATATATTTATT
1 TATATAAATAAATAAATATATATATATATATTTATT
* * *
630046 TATA-AAGATATATAAAAATAGA-ATATATAT
1 TATATAA-ATAAATAAATATATATATATATAT
630076 CTAATAGAGT
Statistics
Matches: 55, Mismatches: 7, Indels: 5
0.82 0.10 0.07
Matches are distributed among these distances:
33 1 0.02
34 19 0.35
35 27 0.49
36 8 0.15
ACGTcount: A:0.53, C:0.00, G:0.02, T:0.45
Consensus pattern (36 bp):
TATATAAATAAATAAATATATATATATATATTTATT
Left flanking sequence: Indices 629476 -- 629975
AGAGAACCAGATGATTCGGTCCATCTCCGATCGGAGTGCTTTAATCGTCTGATGGCATACTTCCT
ATACTTGTTGAATCTTCCGAGCTGACCGGCATAAAGGCGAAAGCTTTAGCTGAATAATAATGAAT
TCATTCGAGAGATGCTTACAGGACTATCACACCAGTTGCAGTTACTATGACCTTCTTCTCCTAGG
GTCTTTCACTGGTCAGGCGAATTGCCAGTAACAGCAATCTGAATGGTTAAAGCACCCAATCATTG
ACTGGTTATTGTAGGGTTAAAGGGCCTATCTATTGTATTGGTGGGGTTAGTTATCCAAGTGGTCA
AATGCGTCTAATAGAATGGGTAAAGAAAGAGTAGCAGCTGCAAGAGATTCTACAGTTGGGATTTT
AGGATTAACCTGAACCAAACCAACCCTAAATGGAAAAACTTGGAACCTCCAACTCTCTTCTTTGA
GGATAGCTCCCCTCTTCTATTCCGGACGGGGTTTCTTATTAGATA
Right flanking sequence: Indices 630076 -- 630575
CTAATAGAGTCTCACTCAATATTCAAAGGATCTTTCATTGATCAGAAGGTGTTGTTTCTTTCCAT
CCCTAGGTTGCGGTTTAGAAGCACTTCATAGTTTGTTATCCGGAACTCCATTCTAAGGATGTAGC
TGCTGAATATCCAATAGTTGACTTAAGAAAAGTTCTCGGACATTATTTTCAAAGAGAAAGTTTGA
GCTATTTTTAAAGAGTAGAGTGGGTTGAGTTGGGAAGCGTCTTTCTTGAGCTTAGCAAGCGGAAG
GGGTTTCATCGGAGAGCAAACTCCCGAGATATTAGTGGCTTGATGAACTATCCCATTTTTTAAGA
TTTTTTTTTTCGTATGAAACAGATCAGCTGGTCCGAATCAATAGAATCTGGAGTTGTTCGGATGA
TTGCCCCTGCTGGGAATCGATTCATGCCAAAACGGGACTTCTTCACTTGTCAGTCGCCCGGGGCG
CTTCTTTTTTTATTTTCTTTATCCCCTTTTTTGATGGTCTCGAAC
Found at i:630075 original size:2 final size:2
Alignment explanation
Indices: 629973--630059 Score: 79
Period size: 2 Copynumber: 44.5 Consensus size: 2
629963 TTCTTATTAG
* * * * *
629973 AT AT AT AT AA AT AA AT AA AT AT AT AT AT AT AT AT TT AT TT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
630015 AT AT AT A- AT AT AT AT AT A- AT AT AT AT TT AT TT AT AA AG AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
630055 AT AT A
1 AT AT A
630060 AAAATAGAAT
Statistics
Matches: 66, Mismatches: 17, Indels: 4
0.76 0.20 0.05
Matches are distributed among these distances:
1 2 0.03
2 64 0.97
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 629473 -- 629972
ACTAGAGAACCAGATGATTCGGTCCATCTCCGATCGGAGTGCTTTAATCGTCTGATGGCATACTT
CCTATACTTGTTGAATCTTCCGAGCTGACCGGCATAAAGGCGAAAGCTTTAGCTGAATAATAATG
AATTCATTCGAGAGATGCTTACAGGACTATCACACCAGTTGCAGTTACTATGACCTTCTTCTCCT
AGGGTCTTTCACTGGTCAGGCGAATTGCCAGTAACAGCAATCTGAATGGTTAAAGCACCCAATCA
TTGACTGGTTATTGTAGGGTTAAAGGGCCTATCTATTGTATTGGTGGGGTTAGTTATCCAAGTGG
TCAAATGCGTCTAATAGAATGGGTAAAGAAAGAGTAGCAGCTGCAAGAGATTCTACAGTTGGGAT
TTTAGGATTAACCTGAACCAAACCAACCCTAAATGGAAAAACTTGGAACCTCCAACTCTCTTCTT
TGAGGATAGCTCCCCTCTTCTATTCCGGACGGGGTTTCTTATTAG
Right flanking sequence: Indices 630060 -- 630559
AAAATAGAATATATATCTAATAGAGTCTCACTCAATATTCAAAGGATCTTTCATTGATCAGAAGG
TGTTGTTTCTTTCCATCCCTAGGTTGCGGTTTAGAAGCACTTCATAGTTTGTTATCCGGAACTCC
ATTCTAAGGATGTAGCTGCTGAATATCCAATAGTTGACTTAAGAAAAGTTCTCGGACATTATTTT
CAAAGAGAAAGTTTGAGCTATTTTTAAAGAGTAGAGTGGGTTGAGTTGGGAAGCGTCTTTCTTGA
GCTTAGCAAGCGGAAGGGGTTTCATCGGAGAGCAAACTCCCGAGATATTAGTGGCTTGATGAACT
ATCCCATTTTTTAAGATTTTTTTTTTCGTATGAAACAGATCAGCTGGTCCGAATCAATAGAATCT
GGAGTTGTTCGGATGATTGCCCCTGCTGGGAATCGATTCATGCCAAAACGGGACTTCTTCACTTG
TCAGTCGCCCGGGGCGCTTCTTTTTTTATTTTCTTTATCCCCTTT
Found at i:641100 original size:4 final size:4
Alignment explanation
Indices: 641091--641180 Score: 180
Period size: 4 Copynumber: 22.5 Consensus size: 4
641081 AGGAGCCCTT
641091 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA
641139 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TAAA TA
641181 GGCCTTTTGG
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 86 1.00
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
TAAA
Left flanking sequence: Indices 640591 -- 641090
TGGCTGGTAAGACATGAAAGACTTCATTCTAATCAACTCAGGGCCCTCCTTGAGGACTGCAAATT
CCTTTTGCAAACGGTTAAGGGAACAGCTTCGCACACCTTGAGAGAAGCCAACGCATGTGCGGATT
TCCTAGCAAATGAAGGCCAAAAGCAAAAGTCTTGTGGTTCTCCAACAACTCCTGCGTGAAATGGA
GTTTCTGCTGATGGCAGACTACTCAGGAGTGGCCGACCTAGTTTTTTGTTTTTTCCTTTTCCTAT
GTACCGCCCTATGTACCGCACCTTAAAGGAGGAAGTCCTTTTCCTTTCAGCATGCTCCGCGCCAT
CTCCACAATGGTTCGGTTCTTCCGTTCGGCTACGCCATTTTGTTGAGAAGTACCTGGACAAGACA
AGTGAGGTAACGTGCCATGTTGTTTGAGAATGGTCTCAAAATCATCATAAGTGTATTCACGAGCA
TTGTCAGAACGAAAGATTTGAATCTATTTATAAAAAGGAGCCCTT
Right flanking sequence: Indices 641181 -- 641680
GGCCTTTTGGTTAATTTATCGAAAAATAGAAAGTAGTTCGGAACCTGACTTCATGAGAAAAATCC
AAGTGTTTCTATAAAAATCGTAAATAAAAATGACAAAGTAACGAGATCCCCCCATAGTAGTAGAT
ACAGGAGCAGGGCCCCACACATCAGAATGAACCAAATCAAATGGAGCATGAGCGAAAGATTCACT
ATTATGAAAAGGTCAAGCTGGTTGTTTCGCAAGTTGCTTATCTATCTTACTTAGCCTAACCCTCT
CTCGAGAAAGCATTGTCTATATTGACTTGAGAGCCTTTCTTCTGTCACAACAATAAAGGGTAACT
TCGGGCTTTCAAGCCGGCACGGGCGGACTCCCTATACCGTCCCATGAGCATGACATTCTCCCCCA
CTTTAGTAATGAGTAATGAGGCTATCTTCTTTTCCTAACCGGACAACTGCCAAATGCAAAAGGGT
TAGGCGAGATGACTTGACTGAACCGAGCCTACTTTTACTAAAAAA
Found at i:646852 original size:69 final size:68
Alignment explanation
Indices: 646668--646898 Score: 204
Period size: 69 Copynumber: 3.4 Consensus size: 68
646658 TCCCTTAAGA
* ** * * * **
646668 TGTTATGCGCGGCTGAAGGTCTTACGAGATGTTCTCTGCCTCTGGTCATGGTCATGTCCCCTAAG
1 TGTTATGCGCGGCTGAAGGTCTTATGAGATGTTCTCTGCCTAAGGTCATGGCCATATACCAGAAG
646733 ATT
66 ATT
* * * *
646736 TGTTATGCGCTGCTGAAGGTCTTATGAGAGGATTCTCTGCCTAAGGTCCTGGCCATATACCAGAT
1 TGTTATGCGCGGCTGAAGGTCTTATGAGATG-TTCTCTGCCTAAGGTCATGGCCATATACCAGAA
*
646801 GGTT
65 GATT
* * * *
646805 TGTTATGCGCGGCTGAAGGTCTTATGAGCTCTGTGCTCTGCCT-AGGTC-TCGACCATGTACCTA
1 TGTTATGCGCGGCTGAAGGTCTTATGAG--ATGTTCTCTGCCTAAGGTCAT-GGCCATATACC-A
646868 -AA-A--
62 GAAGATT
**
646871 TGTTATGCATGGCTGAAGGTCTTATGAG
1 TGTTATGCGCGGCTGAAGGTCTTATGAG
646899 GTGTGGATTC
Statistics
Matches: 135, Mismatches: 23, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
66 26 0.19
68 29 0.21
69 69 0.51
70 10 0.07
71 1 0.01
ACGTcount: A:0.19, C:0.21, G:0.27, T:0.32
Consensus pattern (68 bp):
TGTTATGCGCGGCTGAAGGTCTTATGAGATGTTCTCTGCCTAAGGTCATGGCCATATACCAGAAG
ATT
Left flanking sequence: Indices 646168 -- 646667
CCCGAAATCTCAACTTTCGCATCTCCATATGTGGAAAAAGTAGGCATTTTATGGTCTCTCTTTGG
AATTGCCATTTTCGGACCCCCGGAAACACATCTTTGATGCTCCTTTAACCCATCGTAGTGGCAAT
AGGAATCTAGAGATGTGCCGTAGGGGAGATTCTACTCTTGGATTGTACCTTCGATAGAAGAGGAA
AAAGAAGGCTTCTTCGTGTTCTCTCTTTGAATTCGACCTGCCAGGCCTTCCAAAGGTGCACTTTT
CTATCCTTCCAACCTAACCCATCGAAAGCATCAATCGGAATCTAGAAATGGACCGTGGGAGAGGT
TCTATTCTCGGCATTGTACCATCGATAGGAGAGAGGCAAAATGTTATCTGTCCCTTAATGCTGTA
TACTCTCTTCTCTCTTTCTTAAGACTTTAGATAAGCCTAAGGGCAAGATAAAGACATAGGAAAGG
AAGGAAGAGACGGAGAAAGCCAAAAACGTTATCTGTCCCTTAAGA
Right flanking sequence: Indices 646899 -- 647398
GTGTGGATTCTTTGTCTCTGCCTCTGGTCTTGGTCATATAGGAAAGGAAGAAGGGAAAGCTCGGG
AATACAGCCTTAGAGTTGGGCAAGCAATCGAGAAGCAAGGTCGCCTCGGACAAATCGTAGATATC
GCAGTTCTTGGAATACTTGAAGGTTAATCTTGGAAGTGCACGATAAGCATACCGTTTTATAAGTA
TACAGCGTGTGCACTCGGCCACGAAGACAAGAGCGGGCGGCGGCAGAGGTAGCAGCATCTAAGCC
AGTATCTGGGCCAGTTGGCTTCCATCGAGTTTCCATAAAACAAGGTTGTTCCTTGCTAGTAACTC
TTTCTTTTTGAAGTGAGTGAGCTACAGCCCTCGTGTCCGTTATGTTTTGTATTGGCATTCCGGGT
CTGGAGTCTAGTATTGATTCCAATATATACTAGTTTATTCCTTCCCCTATATTCCTTCTATTTGT
ATGAATACTATAATAGGCTTTGGCTCTTTCTCTCTCTAACAAGAC
Found at i:652018 original size:13 final size:13
Alignment explanation
Indices: 652000--652026 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
651990 GAAGTTCTAA
652000 TCTTACTATATCC
1 TCTTACTATATCC
652013 TCTTACTATATCC
1 TCTTACTATATCC
652026 T
1 T
652027 ATAAAAAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.30, G:0.00, T:0.48
Consensus pattern (13 bp):
TCTTACTATATCC
Left flanking sequence: Indices 651500 -- 651999
TTAAAGAGACAAGATCCGATTCCTTCAGCCTATTCATTCACAGCGGATGAAGTAATAACATTGTA
CAATTCTAACTTCAAACCTTTTTGCTTCCTCCCTAACAGGCCAGAGCGAATGCGGAGGAGAAAAG
ACGCTGGGTTCTACCACTTAGTAAGTAAGAAGTCCATAGTAGCGGTCCATACAGACAATAGGGGC
TAGGTGAGCTCCTCCAATTGCATTTCGTCTTTATAGCGCTAAGCATATCATATTGCCTGGGATAA
CGAGCATAAGAGCTAAAGGGCTATTATCGTATCAGCCCTCCTATAGGTTATGCTAGTTTTTTCCC
CTTTCTTTGTTAATCCTTTGTTTAATAAAGTGCTTTTTTACTATATTTTACCATATAGAGTAGTT
GCTGTTTTCTTTCTTCAAGATAGATCCCCTTCCCAGTGATACAGTTAGACTTTCTAGTGGTGTAA
GCAAGTGCTCCATTGTGTAATGGTCTAAGGGCCTTGAAGTTCTAA
Right flanking sequence: Indices 652027 -- 652526
ATAAAAAGGTCTAAGGTGTGACTTCTTCCAATAGTGGGAGGGCTCACAGTAATCCCGGGTATACG
GGTATAGCAGTAATAGGACTTTAACCTTTTTTATAGGATAAAGGATAAGGCAAGTCATTTTTGAA
AGCAAGAGGGCGATACGAGGTAAGAGTTTGCAGGCCAATTCCCTAAATATAAAGTGATTCAATAA
AAACAAGCACAATCCTGTGGTAGGGATTTTCATTTTAGTCAAGCTAGCCAGTCCAAAGGAGTCAA
GCAAGGAGTCTTTAATGAAAGAAAATGGGCAAGTAAGAGAGGGATTCTCTCCAAAAAGGCTCTAA
GATTATAGGTCAAACAAAAAGAGGTCATAGGGCAAATGAAATCTATCCAGTGAAAAAGCCAACCC
TAAAAGAATCTCGTCTCCCCGCCAATCCTAGTTCTTCGCCCTGTTAAGCTATCTCTTGCAGCTAC
AGTTGAAGTTTCTTTCGATGGGGCCAGTTCCAGGAAAGTGTAAGT
Found at i:653884 original size:12 final size:12
Alignment explanation
Indices: 653867--653896 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
653857 GAAGTGAAAT
653867 ATTGAAGATACG
1 ATTGAAGATACG
653879 ATTGAAGATACG
1 ATTGAAGATACG
*
653891 AATGAA
1 ATTGAA
653897 TAGGACAATA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.47, C:0.07, G:0.23, T:0.23
Consensus pattern (12 bp):
ATTGAAGATACG
Left flanking sequence: Indices 653367 -- 653866
AGAAAGGAAAGCTCGATTCAAGGAAAATACACACGAGCAATGACATTAGAAGGCTTCGAACGACA
GACGGAATACGGAGGGCGTACGGAGATGATTCCGGGGGTTAATTCCCTGCAGGGCTATTACACAT
TCCCGAAGGAAGATTCAGAGCTAGCACATCTGGCAGACAAAGAAAAAGCAGTCCTGGCTTGGTAA
GCAGGTTAAAAGGCTAACCTGATATGACTACTTAGACTGCTTACACTATTTATAAAGCGTAGAAC
ACTAAAGGTTGGTCGTAGATCAGTTCTCTTGTCAAGAAAAGCAGACGTGGATTCGGGTGCTGATG
GAGATGCGTATTGTCAGAATGCACCTTTTCTTTCGGTAAAGTTTTGATTGTTCAGACTTAGGGCC
TGCCGAGTAAGAAAGAAAGAGATCACATTAGTCTCTGCCTTATAGAAGATCTAAGACGGATTCCA
TTCAGGCAAGCGCTGCTATCGAATCTAGCTATCCGGAAGTGAAAT
Right flanking sequence: Indices 653897 -- 654396
TAGGACAATAAAGAGAATAGGCGGAGAATGCCCTGATCTTCGGGAGCTGCCGGTCGTCTCTGCCC
ACTCTAAGACTCTATTAGGGCTGGCTTGAAAGAAGACTCACTTTATCACTTGAAGGAAATGGTTA
ACTCCATTCCCATTTGAATACCCTTAAAGTAACCCCATTTGAGCTATTTAAGGCTAGGAAAATTT
CACCGATGCTTGCAAGTCAATTGCACTACTCTTCCTTGCCATTCGGATCTGACCCACTTTAAGAC
TGGCTGGCTTTAACTAGAACTGGAACTGTCGCTTAATCCGTCCCGTTTCGAGACAGAAAAGAAAG
GGGATGTACGCAATCAAATAATGTATAGGGCACGACTGACAGGACTGTAAACGAGAACTTTTATT
ATACCCGCAGGTTTGATCACATTTATTTCTTTAATTCCTGTACTGATACAAATAGCAATAATACC
AATCAATTCTCTTAGGTGTTTTCTTGTTGTAATTCCTTCACAGTA
Found at i:658084 original size:15 final size:15
Alignment explanation
Indices: 658066--658097 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
658056 TAGATATATT
658066 ATTATCTTATATAAA
1 ATTATCTTATATAAA
*
658081 ATTATCTTATATTAA
1 ATTATCTTATATAAA
658096 AT
1 AT
658098 AGGCTATTTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.00, T:0.50
Consensus pattern (15 bp):
ATTATCTTATATAAA
Left flanking sequence: Indices 657566 -- 658065
ATTTCTCCTAGAATTTCGATGTCTTGTCTCTTTTTCAATAGGCCTTTCTATTCTCAACTCCGTAC
CTCTCCTTTCAGTCTACAAATCTTGACCTCGGAACGACCGCTTGCAATGTCTTCTTCCGTCGCTG
CTTACTCTTTCTCTCGATCCTTTTCTTTCCTATTGGGATACCTTTCGATCTTGGCATGGCTCAGT
GACGTTGGCAGGGATGTGTCACCATTTAAGTAGATATGCTTATTCTTGGCATCAATGCCATCTTC
CTTTTCGATAGCAAGCATCCGATCAAGGGAGAGTTCAACTAGTTCTATTGGCTCTAATCTATCCC
GCCTGAGCGAGGGCCTTAGCAACTGGCATCCTTTCCTTCGTGCTAACAGCCAAAGACCTATTTGT
CCAATCCAAACCTCTAAGGCGCAAAGAAGCCCTTCTCTTACGAACATTGGAGCATCACTTACTCG
AATCCCGAAAGACAGACTCCTTGAGCACTTGCAATTAGATATATT
Right flanking sequence: Indices 658098 -- 658597
AGGCTATTTGCGGGGAAAAGGGGCTTTAATGCCTTAACAAGCCCTTCTTGGCTAACTGCGGTTAT
TCCTCCAACAGCTTAGTCTGTGCATTCATGTCAACTCTCTTCTTATACTATTGGATTAACCCCAT
CAAGAGGACAGTCAGAAGGCTAGCTGCCCATTCCTAGTGTCAGTTTATTTAAGCCGGATATTCCC
CTCTTTTGCACAAGCCCTTTTTGCTTGAAGCTCTAGCCCTTAATGCCCTATTAGCCCTTCTAGCC
TTTCAAAATGGATTAGTACTAATTCGATGGATGCCATCTATGAATCCTTCCCTCCCTCCATCTGC
TGCATGAACATCGACAGTGAAATCACTTAATGTAAGGTAGCGGATGAGGCGAAAGAGCAGCATTG
CATCGGGAGATTGCCTCAAAGAAAGAAGGCCCAGCGACTGCACTCATCCTTTTTAGTTTAAAAAA
GAATCCCTTACCCCCTATGGTCTAGGGTACTACGGGTGGGTTGGA
Found at i:670831 original size:11 final size:11
Alignment explanation
Indices: 670815--670853 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
670805 TATTATATTT
670815 TAAATAAATTA
1 TAAATAAATTA
670826 TAAAT--ATTA
1 TAAATAAATTA
670835 TAAATAAATTA
1 TAAATAAATTA
670846 TAAATAAA
1 TAAATAAA
670854 AAATTACATT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
9 9 0.35
11 17 0.65
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (11 bp):
TAAATAAATTA
Left flanking sequence: Indices 670315 -- 670814
AAAGAGATAAAAAGAACGCCAATGATATATGATTCCAATATAATATGTAAGGTCTATGAATCATT
TCATAAAAAGCAGTGTAATAAAGCATCAAACTAATTCCTCCCGAATTAAATGAATATGTTCATAG
AAAAAAAATCAAGAGCCTAGAGCCAATAAAGACTGAGAAGATTGACTCAAGAACAGGAGCTCCAT
TGTATAATTCAGACCTAACCATTAATTGAGAAGCGATGGGAACGACGGAAACCTGTGAATACAGA
AGATTCTATTAAAAACGAATCCTAATGATTCATTGAGTGGGATGGCGGAACAAACCAGGTATCAA
TTCATTTGTTCTGAAAGATCGTGGGCTAACCTTACAATTGAAATAGATATTGAAAGAGTAAATGT
TCGCCCGCGAAAGCTTTATTTTACCGAATTGCTCTATTTTTTGAGCGATCCGATATGATAAAGAC
AAAACAAAATAAAGATTCGTTATAGCCTTATATATTATTATATTT
Right flanking sequence: Indices 670854 -- 671353
AAATTACATTATCTATAAATATATGTTTAGCTATATATCCAAAAGCTATATATAAACAAGATATA
AAAATTTCTAATAGAAATAGATTAGATGAAAATTAGATGAAATATCAAAGAATCCCACGATTCAG
TGTATTATTCAAAAAAATGGAATTTTATCTTAACTAAATTTTTTTGAATCATTTCATTCGCGAGG
AGCTGGATGAGAAGAAACTCTCATGTCCGGTTCTGGAGTAGAGATGGAATTTTAAAAAGACCCAT
CCACTATAACCCCAAAAGAACCAGATTCCGTAAACAACATAGAGGAAGAATGAAGGGAATATCTT
ATCGAGGTAATCGTATTTGTTTCGGTAGATACGCTCTTCAAGCACTTGAACCTGCTTGGATCACA
TCTAGACAAATAGAAGCGGGGCGACGAGCAATGACACGAAACGTACGCCGTGGTGGAAAAATATG
GGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTACAGA
Found at i:670838 original size:20 final size:20
Alignment explanation
Indices: 670809--670851 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
670799 ATATATTATT
*
670809 ATATTTTAAATAAATTATAA
1 ATATTATAAATAAATTATAA
670829 ATATTATAAATAAATTATAA
1 ATATTATAAATAAATTATAA
670849 ATA
1 ATA
670852 AAAAATTACA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (20 bp):
ATATTATAAATAAATTATAA
Left flanking sequence: Indices 670309 -- 670808
TGAGAGAAAGAGATAAAAAGAACGCCAATGATATATGATTCCAATATAATATGTAAGGTCTATGA
ATCATTTCATAAAAAGCAGTGTAATAAAGCATCAAACTAATTCCTCCCGAATTAAATGAATATGT
TCATAGAAAAAAAATCAAGAGCCTAGAGCCAATAAAGACTGAGAAGATTGACTCAAGAACAGGAG
CTCCATTGTATAATTCAGACCTAACCATTAATTGAGAAGCGATGGGAACGACGGAAACCTGTGAA
TACAGAAGATTCTATTAAAAACGAATCCTAATGATTCATTGAGTGGGATGGCGGAACAAACCAGG
TATCAATTCATTTGTTCTGAAAGATCGTGGGCTAACCTTACAATTGAAATAGATATTGAAAGAGT
AAATGTTCGCCCGCGAAAGCTTTATTTTACCGAATTGCTCTATTTTTTGAGCGATCCGATATGAT
AAAGACAAAACAAAATAAAGATTCGTTATAGCCTTATATATTATT
Right flanking sequence: Indices 670852 -- 671351
AAAAATTACATTATCTATAAATATATGTTTAGCTATATATCCAAAAGCTATATATAAACAAGATA
TAAAAATTTCTAATAGAAATAGATTAGATGAAAATTAGATGAAATATCAAAGAATCCCACGATTC
AGTGTATTATTCAAAAAAATGGAATTTTATCTTAACTAAATTTTTTTGAATCATTTCATTCGCGA
GGAGCTGGATGAGAAGAAACTCTCATGTCCGGTTCTGGAGTAGAGATGGAATTTTAAAAAGACCC
ATCCACTATAACCCCAAAAGAACCAGATTCCGTAAACAACATAGAGGAAGAATGAAGGGAATATC
TTATCGAGGTAATCGTATTTGTTTCGGTAGATACGCTCTTCAAGCACTTGAACCTGCTTGGATCA
CATCTAGACAAATAGAAGCGGGGCGACGAGCAATGACACGAAACGTACGCCGTGGTGGAAAAATA
TGGGTACGTATATTTCCAGACAAACCAGTTACAGTAAGACCTACA
Found at i:699434 original size:13 final size:13
Alignment explanation
Indices: 699416--699444 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
699406 CCCTTCCTTA
699416 TTTATATACATTC
1 TTTATATACATTC
699429 TTTATATACATTC
1 TTTATATACATTC
699442 TTT
1 TTT
699445 TTGTACTAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.28, C:0.14, G:0.00, T:0.59
Consensus pattern (13 bp):
TTTATATACATTC
Left flanking sequence: Indices 698916 -- 699415
AGATATCGTGATGTAAGTCCATTACTCCTTGCATTATAGGTGTTGCTGCGTCTTGAGATCCTAAT
TGCCATGGTTCCGCTGCATCACAAGGAGCAATTGTGAGGAATAGCCATTCTAGAACAATCATTTG
GTTTGGTTCATTCTTTGACTGCTCTGCTCCCCCCCAAAAAAAGAGAGACTTGTCGGAAATAGCCG
GTTGGGTTGGTCCGACCAAGAAAGGCATGGGAGTCTTTGGGCATTGCTTGGGCGCTTGGGCCGAG
TTAAGTAAAGACTGGCTACCTACTGATCGTAGACCACTAAGATCTACGAGCACCCTCACTGCACA
CTTTTTATATCTCTGTCTCCCGGCTGCATGCTCTAGTTATGAATCGGAGATAGAACAATGGGGAG
GTTACAATTCCGAATCCACTATTACAGTAATTTCTTTTTGATGTCGAAACGGTCTTTATCTTTTT
TTTGGGCAATGACTTTCTAATATATTGGGCCTATCCCCTTCCTTA
Right flanking sequence: Indices 699445 -- 699944
TTGTACTAGCTTATCCGGTGCAGTTTATGACACATGAGAAAGGATTCCATCGCCTAAACGGCTCT
ATTTGGGTACGTCCTTTAACGGCCGAGCCCGAACAGCAACGGGAGAGGAAGGCTCTATGTCCATG
AGGTCTCGAGCCGCTTTTTAATCGCCCCTTTATCCGGTCTTGCGAACTCCTTGCTTTTTTGAAAG
CATATCTATAAAACATTCCGATTCCAGAACTAGGCTGGGTCAAATACTATACTAAACGTTCGGCT
AGGAATGAAGAAGCCGTAAAGCCCCTCGACACCCATAGAGGGAGATTTTAGCATAAAGAACGATA
TTGATGATCCAAAACTTTTTTAATTTAAAGAAGCAGCTGATCTACGACCACCCTTCTCATTCTTC
AGAGTCCGCTAATCGGAGAACTCATATATATATTACCGATGAAGGGATTAAACCGGTAACCCTCT
CTGAAAAAGATGTTAAATGTTTGCTTGTTTTTAAGCGCTGTTGGG
Found at i:708331 original size:16 final size:16
Alignment explanation
Indices: 708276--708336 Score: 61
Period size: 16 Copynumber: 3.8 Consensus size: 16
708266 AGTAGAGCAC
* *
708276 CCTGATTTACAATCAG
1 CCTGATCTACGATCAG
*
708292 CCTGATCTACGAGCA-
1 CCTGATCTACGATCAG
*
708307 CTTCTGATCTTCGATCAG
1 C--CTGATCTACGATCAG
708325 CCTGATCTACGA
1 CCTGATCTACGA
708337 CCACCCTCCT
Statistics
Matches: 36, Mismatches: 6, Indels: 6
0.75 0.12 0.12
Matches are distributed among these distances:
15 1 0.03
16 22 0.61
17 12 0.33
18 1 0.03
ACGTcount: A:0.25, C:0.30, G:0.16, T:0.30
Consensus pattern (16 bp):
CCTGATCTACGATCAG
Left flanking sequence: Indices 707776 -- 708275
GCTCGCCTCAGAGGCACTTCGCGAAGCGACCGAAGATAGCATGTGACATCAATCACTCAAGCCAA
GCTGAGGTGTTGATCCCGCTTCAACAAGACTCGACAAGCAAAGGCATGAACTACAACACACAGCA
AGCAGATCGCTACGCTACTTCACTACGGAATGAGCTACGACTGATGACCGGCACAGTCTTCGCCA
AGCAAGATGATGTAACTCCTCAAAACATAAAAAGAGCTCTTATATATGCAGAAACATGATATATG
TGTAAATGAATTATAGCCATTTTCAAATAGATCAGGATCGTCGGATGTCTGAAATGGAAAGTCAA
TTTTTCTATATGTATGTAGATATCTATAGGGGATCATATGAAGGGGATGTTATTATTTTAGATAT
AACCAATTCCCCTCTCTACGCCCACTAAGATCTGCGATCAGCCCTCAACAAAGTTGATCGTAGAG
CACTTCTGATCTTCAATCAGCCTGCCTAAGATCGTAGTAGAGCAC
Right flanking sequence: Indices 708337 -- 708836
CCACCCTCCTGCTTATTATATTGCTTTTATCGATCAAGCATTCCTGTGCTTAGCAAAGAGGTAGT
AGCATTTGGGGTGGCAAGAATTTCATTTTCCGGATAAGCCGGCACAGCTCTTGCTTGCTGTCTGT
ATGTGGTAGGGCCTGGTCAACTGCCCGGCCACCTCTTTAGCTCATCTCTTGTCAACGCTAGCACT
TATTAATAAATGATGCCATTCCCGACTCGCGAAGTGAAGCTCAATCTCTATTCATTAGTTCAGCG
CTAAGATAAGATGTAGAACTGGATCGTATATGGGTCAAGAAAGATTCAATCTGGAATTCTCTTTT
TTATATTGCAATCCTTCTTAGTGAGAAATTACTCTACAGACTATGTAGGGGAATGCACTATGGGG
ACTCAATAAAAGACATTATTTGAGACTTAGGAAATGAAACTTCCATTCAACTATAGTCGAGAGGA
AATAAGTCTCAGCAGGCACTAAAGGGGAAGCTTAGAGACGGAATT
Found at i:712128 original size:33 final size:33
Alignment explanation
Indices: 712077--712157 Score: 121
Period size: 33 Copynumber: 2.5 Consensus size: 33
712067 AGCAGTAGCA
712077 CTGATC-TACGACCACTTCTGATCAAAGATCAGCC
1 CTGATCGTA-GACCACTTCTGATCAAAGATCAG-C
*
712111 CT-CTCGTAGACCACTTCTGATCAAAGATCAGC
1 CTGATCGTAGACCACTTCTGATCAAAGATCAGC
712143 CTGATCGTAGACCAC
1 CTGATCGTAGACCAC
712158 CCTGAAAGCC
Statistics
Matches: 43, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
32 3 0.07
33 36 0.84
34 4 0.09
ACGTcount: A:0.28, C:0.32, G:0.16, T:0.23
Consensus pattern (33 bp):
CTGATCGTAGACCACTTCTGATCAAAGATCAGC
Left flanking sequence: Indices 711577 -- 712076
ACCCAAAATGTTGATGGATATTTCTAGGCTGAGCTTACAGCAATATAGTTCGCTCCAAGGGAAAA
ATGGAGTGGAGACTTCCTTTCCCATATCGTCTAAAATCCATTGGGATGATATCTTTCTTTGTTGG
AGCTAGAACTCTCCCGATTCATTACTGGGACTGCATTTATATACTTTTACAGTATAATAAAAGTG
TTTGGGCTAAGCAGCTTAAATATCTTTTTATCAAGGGTAAGGTTTGGAACTTGTTGATTCTGCAC
TCGCTACATCATTTACTAGGGGTGATGGTGAAGTATTGCTAAGAGTTAATAGCTTTCTAAGAAGG
GCTTTGCTTGCCCCCTTTAGTATAGTAGTAGTAGTCTAGGAGATGGAAGATATGGAAGCGATCAT
GCCAGCTCTAGTGCGCCTAATACCATATGAGCTACATTGTTGAGTATGGTCAGTACATAGATGGG
TGGAGCCAGCTTTGCATACTCTATTTTAGGAAAAAAGCAGTAGCA
Right flanking sequence: Indices 712158 -- 712657
CCTGAAAGCCAATTGAATCAAATGGCTTTGCGGCTTTGTTGGTGTTCAGTGTACCGCACCGAAGC
TTGTGTAGCCTATGCGAAGCAAGCCTATTTTTTGTAGGGTACAAGATCGAAAAGAATGCATTGGA
TTCCAAGTGAGATGCCCAAGATAAAAGGAACGAGGTTGGTCTACGATCTTAAGCAGGCTGATTGT
AAATCATTTTATCCGAGAGGGCGAATCCATAACAAAAAATCGTGAAGGAAAAAGATAGCGTGACG
AGAATTCTCAACTCGAGATGTTAGAAGGTGCAAAATCAATGGGTGCCGGAGCTGCTACAATTGCT
TCAGCGGGAGCTGCAATCGGTATTGGAAACGTGTTCAGTTCTTTGATCCATTCCGTGGCGCGAAA
TCCATCATTGGCTAAACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTAACCGAAGCTATTG
CATCGTTTGCCCCAATGATGGCCTTTCTGATCTCATCCGTATTCT
Found at i:751068 original size:22 final size:23
Alignment explanation
Indices: 751040--751089 Score: 93
Period size: 22 Copynumber: 2.2 Consensus size: 23
751030 ATATAAATCG
751040 ATATTACTTACTTTACTATAAC-
1 ATATTACTTACTTTACTATAACT
751062 ATATTACTTACTTTACTATAACT
1 ATATTACTTACTTTACTATAACT
751085 ATATT
1 ATATT
751090 TATAAAAATA
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 22 0.81
23 5 0.19
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (23 bp):
ATATTACTTACTTTACTATAACT
Left flanking sequence: Indices 750540 -- 751039
AAAATTTGACTTTCGTTATTCCTCTGTATCCGACATTTCTGACGAACAAATGGGTTATAGCATTT
CATGTTGGATCAGCGAATTATTGGGCCGAGCTGGATTTGAACCAGCGTAGACATATTGCCAACGA
ATTTACAGTCCGTCCCCATTAACCGCTCGGGCATCGACCCAAGAAGAATCAATTCTAGGCTTATT
GATAATCCATGATCAACTTCCTTTCTTAATACCCTACCCCCACCCAGGGGAAGTCGAATCCCCGC
TGCCTCCTTGAAAGAGATCCTGAACCACTAGACGATGGGGGCATACTTCCCCGATCGCCATCATA
CTAGGATGATAGTATCAATAGTTTTTAAAAATTGTCAATATAATGTAATGGTATGACTAGATCCG
AAGGATCTTTCCGTCTTTCATGATTCCATAGAATTTTTTGATTCGTCATTTAGATTCATGAATCA
GTCATTCTAATCGACATTCTATATAGAAATCGATTATATAAATCG
Right flanking sequence: Indices 751090 -- 751589
TATAAAAATAAAAAATAAATAATAAATAATGATAAAGATATAAATATATATCTAAAGAAATCAAA
ATTAATAATACGAAGGATAGTCTCTTTTCAGGTAGTCATTTGTCCGCCAAAAAAGGGGGGTTAAA
CGCCATTTCTTCCACTGTCATTCATTGATTCACTCATTGTTAAGATGAGATATGCCTATCTCTAT
CTCACACTAAGCCAGGAAATTTACAAACGAGAAATCGGGGAAGAGGGATCAATAAGTTATCGAAA
ATTCTTTTTTCTCTAAGAATTTGGTTCAGGGAGGGGACAAGTCGAATCTCTTCATCACATGATTC
AATGAAATATCTTGGATCTATGTCGAATTAGTAGGTACATGTATCAATCAAGTTAATTTCGTTCT
GATGGGGATCAATTCAAAAAGCAATTGGGGTTGGTCTTGAAACAATTCATTGCATTGATATTTCT
CAAATCAAATATCAATAAATCATTTTACCCGATACTCGCTAGGTA
Done.