Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_029039
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 565432
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:13809 original size:34 final size:32
Alignment explanation
Indices: 13772--13893 Score: 135
Period size: 34 Copynumber: 3.8 Consensus size: 32
13762 AGGTTCTTTT
*
13772 AGATCTGACCCTTTAGAAAGGGTCAGGTTCTCAT
1 AGATCTGACCCTTTAGAAAGGGTCAGG-T-TCAA
* *
13806 AGATCTGACCCTTCATAAAGGGTCAGGTTCAA
1 AGATCTGACCCTTTAGAAAGGGTCAGGTTCAA
*
13838 AGATCTGACCC----GAATAGGGTGAGGTTCAA
1 AGATCTGACCCTTTAGAA-AGGGTCAGGTTCAA
**
13867 AGATCTGACCCTTTCTAAAGGGTCAGG
1 AGATCTGACCCTTTAGAAAGGGTCAGG
13894 ATTTGATTTC
Statistics
Matches: 76, Mismatches: 7, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
28 2 0.03
29 24 0.32
32 22 0.29
33 3 0.04
34 25 0.33
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (32 bp):
AGATCTGACCCTTTAGAAAGGGTCAGGTTCAA
Left flanking sequence: Indices 13272 -- 13771
ATACATCCCTCCCCGCCCACCGCCCTATACTACACAGATTGCAAACCTAGGGTGGTGGTGGGAAT
AGATTCTCATAGCATAGCTTAGAGACTGAGGGCAGTGGGTGTAGTCAAGTAAGTCTTTGCATTTC
GACCGGAGAATTGGCGAACCCTGCCCCACTATTACTATTAGAAGAGTACCTGTCTCGCTTCCGCT
CCCGTACAGTAACGGGATATTAGAGTAGACACAGATAATAGGAACTAGTTTAAGGTACAGGTTTT
CCCCGTGCTGGTACTAGAAATGGTACTAGTTCAAGTAGTAGGTTTGGTTACAGGAAGGTTATAGG
AAAGAGTATATAGTAGTGTTTTAAACAGGTACTATTCTAATAGTGGACCGTTGCCTACCCTTAGA
TAATATAATAGGTAAAGTAATATCGGAGCTCTTTTCGCAGCAATTGAATCAGAATCAGCTGCTCT
CGAATCTAGCTCTTTCTTACCGGAATTGATGTCCGAGGTTCTTTT
Right flanking sequence: Indices 13894 -- 14393
ATTTGATTTCATTTTATGAGCAAGTCCTTGATCTCGCCAAATGATAGGATAGCTGTTAGCCTAGG
AGTTTGCTCCCCAGCTACTCGGGCACTCCGGCTCGAAGAGCCCCACTGCCTCTATACCGGGAACC
TTTGGCTTTCTTGTCTTCCTCTGAACCGAGTTCGTGCTCAAGGGTCAATCAAACCACGAACCAAA
GGAACTCTCTATTAACAAGTCCCCTGTGAATGATCCCAAATCATTCTGAAAGCTGGGGCCAGACA
TAAAGATAAATGGAGTGAGTCCTCTTCCTCTTCTCTATCTAGGTATCACCTCCCCTGTAATGAGA
ACTCCCCGTAGATTGACTTATGCCTCAAGCCCGGCTATCCCGATCTGTACTCTAGTTCTATCCTC
CGATGGGGCTTCTCGATATGGCTAGACTGTCTTTCCTAGCTCTGAGATTCATACTAATCAGATGA
ACCAGACTCTATCTCTAGAGTCTGCATGATCCGACTTGTAATATA
Found at i:16739 original size:13 final size:13
Alignment explanation
Indices: 16721--16752 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
16711 GACATATCGG
16721 ATATAGATAGACT
1 ATATAGATAGACT
16734 ATATAGATAGACT
1 ATATAGATAGACT
16747 ATATAG
1 ATATAG
16753 TCTATCTATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.47, C:0.06, G:0.16, T:0.31
Consensus pattern (13 bp):
ATATAGATAGACT
Left flanking sequence: Indices 16221 -- 16720
ATTCCGATCCTAGGTTTTTCCTATCCGCTTGGCTCTATTGTATCCCGATTGGAGATACATGGATC
CTTGAATTGAATGAATAAGCTAGACTATTAGAGTAGAGTACTGAGAAAGAGAAGAGTCAAGGGTG
ACGAATTCTTGAGAGAAAGAAAGGGATTGATTTGCAGTCGAGGCCTTACCGATCGGACAGGCGCA
TAGAAAAGAGGTTCGAGCTCAGACCCCTAGAACACTCAAGAGAGTCTAACCGGGAGCGGGACTTG
GTATCATCTCTATCACTATATATAAGAGTACCGTAGAAGAGTACTGATTCATATCCCATTGGAGA
CCAAAAGACTCTACTACCTATATGATACCGAACTAGACTGAACGAAAGAAGAAATTCTGACCGCT
ATAGGAAGCCAGAGAAAGCAAAGAGACAGTCGGTATAATATAGGTAGTAGAGAACCTGACTAGCC
CAAGGACCTTTCATGGAAGAAGAAGAAGTCAGTCGGACATATCGG
Right flanking sequence: Indices 16753 -- 17252
TCTATCTATGTCCGAGAAGAAGGGGCAAGCGGATGAACAAAGGGTCGAAGAACAGTATGGGGGCT
GGTACTGATATATATTGCCGAGAGGTTTGGAAAGAGTCTGGTGCCGATGCTCTGCTGCTTTGAAA
CCTCCGTCAGTACTCTTCTAATAGTGTCCTTTGAAACATCCGCCGCCATCCAAGTACTCTACTCT
ATATAGTGCCGATTGATTCACCTAGAACTCATATGCCCGGAGTCAGCAGCACCTTTGGTAGGGCT
GGAAGATGGAGATGACCTATTATGAAAATGACTTAGATCGACCGCTCACGCGCCTGAGGATGAAC
CATATCCCACGATGAAAGAGCTTCAACCAGATGAGAGAGGCTCACATCACAGGGGCAGGAGACAT
ACATATCTTTCAGAACCAAGAACGGGATATTCGCATGAGCAGAAGGAGGAGAGCGAAGAGATGAG
CACTCTTCAAGCTTCACGAAGTCATCTATGTGACCAATGCACGCT
Found at i:20805 original size:13 final size:13
Alignment explanation
Indices: 20787--20813 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
20777 TGGTGGGGTG
20787 GTGGACTTTATAT
1 GTGGACTTTATAT
20800 GTGGACTTTATAT
1 GTGGACTTTATAT
20813 G
1 G
20814 CTAAATACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.26, T:0.44
Consensus pattern (13 bp):
GTGGACTTTATAT
Left flanking sequence: Indices 20287 -- 20786
TATTTAGCATATAAAGTCCACATATAAATAATCCTCTTTTATTGTATATATATATTATATATAGA
GAGCAGGTCATGGTATTTCGACAGCAAGCCATTCGGCAGTCGCTAGTCGGAGGTGCCATGAACGC
GGGAAAGGGGCAGGTGGTCGTGAGCTGTCTTCGGAAGTGGTACTACTCGTGGATGGATGAACCCG
ATGGTTCGAGGTCGGATCGCTGGACTATATAGAGTGAGTACTGGAGGGCGCCTACCGGCCCGTAC
CACTGAATGAAAGTCTAGGTGCTCCCGCACTATATCTATATAGAGTAGAGTACTGAAGGTGGGGC
ACCCGGGGGTACGGGAGGAAGCCAGGTCCAAAGGTTCTAAAAGATCTGACACCTCTTAGGTGAAG
GTTCTAAACCCTTATATTATATATTCAGTAGCAGAACCTGGATTTCCTTCACCGGTCGGGACATC
GGGGGCGATGGGGGACCTTCTACGCCTACGGCAGTTGGTGGGGTG
Right flanking sequence: Indices 20814 -- 21313
CTAAATACCAATCAAGTCCTCTTGACTCTTTACCCTTATAGATGAAGTACACCTGCAAATGGGTC
ATTGGCCGGCATACGAGTGGATGGTTCAACATAGGACTCAAACCAAACGAGTTCCATGAGGTCAT
CAGGAAGACGGAATGGGGAATGGGGCATGCACTGCTGGCGTGGGTGAGCAAGCTCGGAGCGAAAC
GTCCAACCACCACATCATCCACCTATAGTGGGGGGCGGAAGCCAAGCACAGCTAGCGGTGACTGG
GTAGGATGGATTGGGATGGAGGTGATGGGTTGATCCAGCTACCATGAAACGGGACGTCCAAGGGT
CAATCGAATGGGTGCGGGAGTCGTTGGCGATGGAAATGGGGGCACAGATCGGAGCGAACGGAAAC
ATCTGACTAGCTCCATCCACTCAATCAACCGAGAACATGGCAGTAGCGGCGAGCGAGCACCATGG
GGTGAGTGGGCTCATGCGGCTGGTAGGCATCCACCAGTCCGTGGG
Found at i:22876 original size:13 final size:13
Alignment explanation
Indices: 22858--22884 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
22848 CCGGTTGGTG
22858 GTGGACTTTATAT
1 GTGGACTTTATAT
22871 GTGGACTTTATAT
1 GTGGACTTTATAT
22884 G
1 G
22885 CTAAATACCA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.07, G:0.26, T:0.44
Consensus pattern (13 bp):
GTGGACTTTATAT
Left flanking sequence: Indices 22358 -- 22857
TGGGGGTATCGGAGCTGGTTCAGGCGGTCGGCTTGGAAGCAGCCATACGGATGATCGAAAGCGTC
ATAGCTCACTGGTCAAGGGCGAGTTCGAACCGACAATGTCACGGGTCTATAAGTGGTGCACCGAA
GCGACGAGACGATTCCATCATGGTCCTCCCTCCGTATCATCTAGATAGTCAGATACTGAATGTAT
TCCAGGATACGACAACGATGGTGCTGTCAGTAGCGGGACGTTCTGTTGATATATGGTAGGGCCTT
GGCTACTACGCCTGGGGTTTGCTCAGAAGAGAGAATGCTGACATGAGTATACTATTTCAATCCTG
TTTCCACGGGGAGCGCTAGCAGTAGATCAGGGTTTCAACGGGTGGTCGGAAGTGTTGAGTGAATC
GGTCCCTTAGCTCTCCTTTTGCCGATGGGGGTACTCGAGAGTGAGAGGTCTATTTGACTGACAGT
GAAACGCCGATGAACATGACCATAAGGTTGAAGTACCGGTTGGTG
Right flanking sequence: Indices 22885 -- 23384
CTAAATACCAATCAAGTCCTGACCCTTCCATGGTAGTTCACTATTAGAAGAGTACTGACCATGTG
CCGCAATGGCACAGGGTGGAGGTCATCAGTACTATTCTAATAGTGTTGATAGACTATTAGAATAG
TACTGATGATTCCCCATGAAATGGTTGGGTGCCTGGATGGATCAGGTACTCTTCGGTAGTTCACT
ATTAGAAGAGTACCTGAGCTGTTCAGCATTGCTGGAATTGGGCATATCGCACATCCGAATCGCAT
ATACATATACATATACATATACATATACATATACATATACATATACATATACATATACATATACA
TATACATATACATATACATATACATATACATATACATATACATATAGTAGCTGGGGGTTGAGTTG
CGCAATGGGCACCGAAAGGTGAGAATCACCACCATAAGGTTGAAGTACCGGGCGACTGGTCATCG
GTTTCATGGCTCATTCACTGACACCACCTCACGACTATAGGGGGA
Found at i:23153 original size:6 final size:6
Alignment explanation
Indices: 23142--23255 Score: 228
Period size: 6 Copynumber: 19.0 Consensus size: 6
23132 ATCCGAATCG
23142 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
23190 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
1 CATATA CATATA CATATA CATATA CATATA CATATA CATATA CATATA
23238 CATATA CATATA CATATA
1 CATATA CATATA CATATA
23256 GTAGCTGGGG
Statistics
Matches: 108, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 108 1.00
ACGTcount: A:0.50, C:0.17, G:0.00, T:0.33
Consensus pattern (6 bp):
CATATA
Left flanking sequence: Indices 22642 -- 23141
AGAAGAGAGAATGCTGACATGAGTATACTATTTCAATCCTGTTTCCACGGGGAGCGCTAGCAGTA
GATCAGGGTTTCAACGGGTGGTCGGAAGTGTTGAGTGAATCGGTCCCTTAGCTCTCCTTTTGCCG
ATGGGGGTACTCGAGAGTGAGAGGTCTATTTGACTGACAGTGAAACGCCGATGAACATGACCATA
AGGTTGAAGTACCGGTTGGTGGTGGACTTTATATGTGGACTTTATATGCTAAATACCAATCAAGT
CCTGACCCTTCCATGGTAGTTCACTATTAGAAGAGTACTGACCATGTGCCGCAATGGCACAGGGT
GGAGGTCATCAGTACTATTCTAATAGTGTTGATAGACTATTAGAATAGTACTGATGATTCCCCAT
GAAATGGTTGGGTGCCTGGATGGATCAGGTACTCTTCGGTAGTTCACTATTAGAAGAGTACCTGA
GCTGTTCAGCATTGCTGGAATTGGGCATATCGCACATCCGAATCG
Right flanking sequence: Indices 23256 -- 23755
GTAGCTGGGGGTTGAGTTGCGCAATGGGCACCGAAAGGTGAGAATCACCACCATAAGGTTGAAGT
ACCGGGCGACTGGTCATCGGTTTCATGGCTCATTCACTGACACCACCTCACGACTATAGGGGGAG
TGGACACTATATAGACAGAGTACCTGACTCTTCTAATAGTGCTGCCACCTTCCATATGGCAGTGC
CGAAGGCGGGGGGCAGTTTCAGCTACTCTATCTAATAGTCCTGTGATACTTGTTGGGGGCAATCG
GTATCATATAGGTAGTAGAGGTAGCGGGACTAGGCCAAATCCACTCCAACCGTTCCGTCAGTGTT
GATGGTGGAAGTGGTTGGGCTATGGCAAGCATAAACTGGAAACAACTGCGAGTGGACGAGTCGAA
TCAAGCCGGAAAACAGATGACCGTACCAACAACCGACACAGGTGCACCAGTAGAGTATACTATTT
GGCGCGTGAGCAACCCATTTTGAAGGAACTCGGCAAGCGCTTGAA
Found at i:36231 original size:15 final size:15
Alignment explanation
Indices: 36211--36241 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
36201 GTCATGCCTT
36211 AGGTTCACGAACTAG
1 AGGTTCACGAACTAG
*
36226 AGGTTCACGAGCTAG
1 AGGTTCACGAACTAG
36241 A
1 A
36242 AACACCGTTA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.32, C:0.19, G:0.29, T:0.19
Consensus pattern (15 bp):
AGGTTCACGAACTAG
Left flanking sequence: Indices 35711 -- 36210
ATGCGCTCAAATACAGAGAGGAATGGAGTAACTCAACTCCGAGAGAGGAACGTGGCTCTCTAACC
GCTAGTTTCTTACTTCTCAGGTTCTTACGGGGAATCTCAAACCATACAGATCTTTGGCCATAGAA
TTGGTTGACCCGTCTTGAGGCATCCCTTGCTCTGCTTGCTCCGCCTAAATATGTATCAATAGCAA
TGGCAAGAAAAAAGAAAATGCAACTCCAGTAGACCTGAATACTGAACAACACTGATCTGATGAGC
TGAAGTCTACCCGCATAGGAAAGCCGTTCACACCCAAGTGGCAGATCTCTTTCAAAAGGAAGATC
AATTTGACCCACTAGCAATAGAGCAAGGAAAGATGAATAAAAAGGCACTCGCAGTCATGGCGGGG
GCTGTAATGATGAGTTTGCTACTCAATCAAAACGCATTTAGTGCAGGAAGTTTGGTACTAAGAAC
ATACGGTACTAAGTCAGAAATACTTCCTTAGTCCTGTCATGCCTT
Right flanking sequence: Indices 36242 -- 36741
AACACCGTTAAACCATTTATCTGCCGTGCGAACGTATATAAAAAAAAATAAGGAATATTGGCACC
GGACGATGTTCCGGAAATAGGTACGGGATATTGCATTGGTTATCGAATTGGAATGGACCTGGTTC
ACCTTATGGAAAGAAGTCATCCTACGGAAAAAGGATCTAATCCTAGAGAGAAACTGATCCTAAGG
GGACTTCATCCTAGAAAATAGACAGGGCTGGACCATGACTGGGAAGGGCGCTGGGCCCTGTACCC
GACTTTGGAGATAGACATTGTGATTTCCTAAGGTGTGATTCACCTATGGAAAGGGACCGTGCCTA
CTGAAGATTGGACTAAAAAGGCGTCGTGCCTAATTAGGGGTTGATCTTGAAAAAGGTGCTGTGCC
TCGAAAGGTTTAAGTTATCCTATGGATCGAATCTCGAAAAGGCGCCGTGCCTTGTGTTTGAATGA
ATGTTTCTAGAAAAGTCTCGAAAAGCCTAAAACCTTTCATGTGGA
Found at i:41736 original size:14 final size:14
Alignment explanation
Indices: 41717--41745 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
41707 AGCTCCAAAA
41717 CAAAGTATTGAGAC
1 CAAAGTATTGAGAC
41731 CAAAGTATTGAGAC
1 CAAAGTATTGAGAC
41745 C
1 C
41746 TCAGACACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.41, C:0.17, G:0.21, T:0.21
Consensus pattern (14 bp):
CAAAGTATTGAGAC
Left flanking sequence: Indices 41217 -- 41716
TGTTTTTGGCACTAGCAAGAAACCGGGCCATAGGCAATCCTAGCAAGGGCAAGGGCATCTTGTGT
CTCATCTCTCGACGATCAACCCAACCACGATCGTTGTGTTTCCTACTGACCTAAAAGTCAGCAAT
GGTCCAAGGTCGCGAACAGGCCTCTCATTTAGCCAACAACAAGCGGCTGGTCAGGATGCGGTAGC
GAACAGCAGGTAGCCGAATTGAGGTGTTCGGTTCCTTTAGCCATGGGGGGAGGATCGAATCAGCG
GGGGCTATGGCAACAACGGTCTATCGGACGGACAAAAGTCTTGGAATCGTATGACTGGTCGTGCA
GGCCGTTGCCGTGGTTGTCGATTGAAATGCACACCTATGATTGGTGCTGCGATGCTATCGATATC
GTTTGGCCAGGGCGATACCACCTGCTGACTGAACTAGGATACACCTGCCCTAGGAAGAACCTCAC
CCTTGGTACTAGTCTACGAGCACTAGCCAAGTCGTAGCTCCAAAA
Right flanking sequence: Indices 41746 -- 42245
TCAGACACCTAAAGACTCAGGTCTCAATACTTTGGTCATCAAGGACCTCAGAACCTCAATACTTT
GGATGATGCAACGGTGTGAAGGGGAACGGGAAAGAAGCAACGATTCATATGCGGGCGAATGCAAT
ACGCGCAGGCGATTTAGTGTTCAGAGATGGAAAAATGCTATATACTAGAAAGGTGAATCCATAGA
GGTAATACCATTGAGTTGTCCTCGTCCTCTCGTTCACTCCGTTCACTTCGGTCCTCGCTTTCCGG
ATGGATCGGGTGAAAGAGATGCAGCTCGTTCCGTTGCTTGCCCTTTGTGTTCCGGAGTCAGTCCC
CGCTCGTTGTTCCGCTTGCTCACTCCTCGCTCCCCTCTATCTCCTCCGTTTCGGATTCGTTCGAG
CCACCCGTGAAGAAAGAGATGCTTTCCTGCAGCTGCAGCAGGCAGCTAAGCAGTCGAAAGACTCA
CCCTCGATAGCAATGTGTGAAGCATGCATACATACCGAGCCGCAT
Found at i:42483 original size:14 final size:12
Alignment explanation
Indices: 42449--42485 Score: 56
Period size: 12 Copynumber: 2.9 Consensus size: 12
42439 CACCAAAAAA
42449 GGTGCCTATAGT
1 GGTGCCTATAGT
42461 GGTGCCTATAGT
1 GGTGCCTATAGT
42473 GGTCCGCCTATAG
1 GGT--GCCTATAG
42486 ACTATATAGA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 15 0.65
14 8 0.35
ACGTcount: A:0.16, C:0.22, G:0.32, T:0.30
Consensus pattern (12 bp):
GGTGCCTATAGT
Left flanking sequence: Indices 41949 -- 42448
CATTGAGTTGTCCTCGTCCTCTCGTTCACTCCGTTCACTTCGGTCCTCGCTTTCCGGATGGATCG
GGTGAAAGAGATGCAGCTCGTTCCGTTGCTTGCCCTTTGTGTTCCGGAGTCAGTCCCCGCTCGTT
GTTCCGCTTGCTCACTCCTCGCTCCCCTCTATCTCCTCCGTTTCGGATTCGTTCGAGCCACCCGT
GAAGAAAGAGATGCTTTCCTGCAGCTGCAGCAGGCAGCTAAGCAGTCGAAAGACTCACCCTCGAT
AGCAATGTGTGAAGCATGCATACATACCGAGCCGCATATGCCCATGCCATCCTAGGCATTCCTCT
TCTTTAAGATGGTGGTTGATTGGGGGTACGGTTTCATGGATCGCTTGGCACAAATGGACAGATGG
CCACTATGACTACTACGCGTCGGGCTGGGGTTGATGGAAGGTATGGCATGGATGGTTTCAGAAGG
CCAATCTCGGTATAATATAGTCGGACCACTATAGGCACCAAAAAA
Right flanking sequence: Indices 42486 -- 42985
ACTATATAGAATAGTACCTGGCTAGATTATACACTATCTAGATTATATACCGAGTGGTGCAGTTG
GCATTGCAGTTGTTGGGGGGCAGATGACAACGATGATACCTCGAATCACCAAGGTGTTTGGCAAA
TCAATGGGCACCATTTCAATGACAATAGAGCGACGGAAGCGGGTTGGAGGAATTGGCTAGACTCC
TCAGGCTCATGACCTGAACGACTGCAGGTTCGAATCCTGTACCCGCAAAGGAGATGGTGCGAGAT
CGGCAATGCTAGGCTTGGCACCACCACGATCCGAATGGGGTTGATGGGGTTCAAGATGGTGACCT
AGTTGATACCATTGGGGAAGTGGCACTCTTAGAGTAGAGTACTAAGGCACCCCTACTACTCTTAT
TGATTGGGTGGTATTGGCTTTTGACACCGATATAGGATGATACCGAGGTCAATCGGTCACGTACT
GTATGGATGGCATGGAGTTGGTGGGGTTGGAATAGAGACCGATAT
Found at i:46187 original size:18 final size:19
Alignment explanation
Indices: 46164--46200 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
46154 GTAGGATGTC
46164 AGTACTCT-TCTAATAGTG
1 AGTACTCTATCTAATAGTG
46182 AGTACTCTACTCTAATAGT
1 AGTACTCTA-TCTAATAGT
46201 ACTACTGCCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (19 bp):
AGTACTCTATCTAATAGTG
Left flanking sequence: Indices 45664 -- 46163
ATTGGTTCCCCGACTCCACCGCCATGTTCAAGAAAGAGTGCTGTCATTGATTTGGCCACTGAATG
CACTCGATCGCCCGCATGGTTTCATAGAGAAAAGGCCATATCCGCTGGCATTGGAGTTGAGATGG
GTTGGCATCGGCATTGTCGATTTCACCACCAATTCAATAGTGTGAGTAGTTGTGTGAAGTCTACT
ACCTATATTATACCGACACTATTAGAGTAGAGTACTGAAAGAATATCCGGTTCTTTGAGAGTTGG
CGGTAGTGGGAATAGGCGCATGGCGGTGACCCCACGTCTTGAAGCACAAGCAGTACTAGCGGCAT
ACGGCTAAACTACTGTTTGAGAGGTCCGGTAGGCAGCCCCGTTCACCGAATCGATCGTCGTCGAA
GCAGTGGATCGGAATGCGTTTTGTTCTTGGGTGTCAAATACGACCTACGGCTAAAGCGATGCATA
AGAGTGAGGCAAGGTGAATCGCGCTCGGGAATTTGGTAGGATGTC
Right flanking sequence: Indices 46201 -- 46700
ACTACTGCCTATATTATACCGACCAGTAGATGGCCAAAGGTTCTAAAAGATCTGACACCTCTTAG
GTGAAGGTTCTAAACCCTTATATTATATATTCAGTAGCACCTATCTGACCCTTGAGTTAGAAAGG
GTCAGGAGGGAGAGGGAGAACTGGTACTGATATATATTGATGGGTTGGGGCCAATCTCGGTACTG
ATTCAAGTGGTCATGAATCAGTACCGATATCAGGCCTGGTCACTCTCCTACCTGCTTGTCGCTAG
TTCGGTTTATAGTTCGATTACGCATCTAGCTCACGGACAAGCGCTGCTACTCGCCAACCAGGAAA
TCACCTTCAGTTGGTTATTCAGGGAAAGGATCTGGAAGAAATCGACCTAAGCCCCGGCGCTCGAT
GCGGGTCTTTGCCTAGCCTTCTCCTTTTGCCAAAAGTATTGGAAGCTTGAATGGTAGGGTCCGGA
CTGAAGTGCGAGCGGGCCCCTCGCAGCTCAACCATCTATTTTCGG
Found at i:53821 original size:32 final size:30
Alignment explanation
Indices: 53776--53859 Score: 89
Period size: 29 Copynumber: 2.8 Consensus size: 30
53766 CAGTAGCCGA
* *
53776 GTTCAAAGATCTGACCCTTTCTAGGGTGAG
1 GTTCAAAGATCTGACCCTTTCTAGGATCAG
* ***
53806 GTTCTAAAAGATCTGATCC-GAATAGGATCAG
1 GTTC--AAAGATCTGACCCTTTCTAGGATCAG
53837 GTTCAAAGATCTGACCCTTTCTA
1 GTTCAAAGATCTGACCCTTTCTA
53860 AAAGGGTCAG
Statistics
Matches: 41, Mismatches: 10, Indels: 6
0.72 0.18 0.11
Matches are distributed among these distances:
29 12 0.29
30 6 0.15
31 11 0.27
32 12 0.29
ACGTcount: A:0.29, C:0.20, G:0.21, T:0.30
Consensus pattern (30 bp):
GTTCAAAGATCTGACCCTTTCTAGGATCAG
Left flanking sequence: Indices 53276 -- 53775
AAAATAAAGACCTTTTTGAACCCAACCGCAGCTCTCTCTTGATGAAGCCGGCCCAGGTACTCTGT
CTATATAGTATAGCAGATGTCCATCGTGTCCACACCACCGCAAGGAGCCCAGGAACCCGGCGCAA
GGACTATATAGAAGAGTACCTGACTCTACTCTAATAGTATCGACACCGATATAGGAGGATACCGT
CCACCCCCATTGGGAACCCACCCACTCGGTGCATCTTCCCCAGTGACCAGTCCGGAAGTGAACAG
CCCATGTCAGGTGCCATTCGATTCCGCCAGTGGATATGGCCATCGTACCCGCCGTAGCTATTTGG
AATAGAGCATGGACGTTGCAAACCCAATCACATAGGGCCATTGTGTTTGGGGGGTTAAGGTTCTA
AAAGATCTGACCCTTTCTCAACCAAACCGAATAGGGTTCAGTAGCCGAGTTCTAAACCCTTATAG
ATTCAGTAGCAGCCCTTTCTCAACCGAATAGGGTTCAGTAGCCGA
Right flanking sequence: Indices 53860 -- 54359
AAAGGGTCAGGAGACAGCTACTATATTCTAATAGTTGACCACCAAGACTGGTATACATCTATGAA
TAGTAGTCCTGTGAGGCACGATTCGTTACGCTCCTTAGCTCGGCTCGTTTGGTAGGGGGTACAAG
AGTGAGATCGGAGTGAACCGAAAAGGGAATGTCTATTAGAGTAGAGTCAGGTACTCTGTCTATAT
AGTCGAGTAAGAAGATTCATTTATAGGCTTGAAACCTCACTTGTCTGGAGAGCGAAATGAACCAA
TCGCACATGAATTAGTTAATGCTTAACACTACAGCTAAGGGGTTCATCCATACACTTAAAAAAGG
AGGTGAATATTCTCAACATATATTTTTTGATAACAGACTGCTAGCTTTCAAGATTCCAGTTTTCA
AACTTGCCTAAGCTCTCCATAGCTTTATGTCTATCCTGCCGCTCTATCTCTAGCTTTCTTATTTG
CTTGCTCTAGAGCTCGCAGGTTTCAAAATGAGAACTTCCTTCCCC
Found at i:60463 original size:33 final size:33
Alignment explanation
Indices: 60420--60500 Score: 155
Period size: 33 Copynumber: 2.5 Consensus size: 33
60410 TATCTAAGGG
60420 TTCT-AAAGGGTCAGGTTCAAAGATCTGACCCT
1 TTCTAAAAGGGTCAGGTTCAAAGATCTGACCCT
60452 TTCTAAAAGGGTCAGGTTCAAAGATCTGACCCT
1 TTCTAAAAGGGTCAGGTTCAAAGATCTGACCCT
60485 TTCTAAAAGGGTCAGG
1 TTCTAAAAGGGTCAGG
60501 AGATGAACAA
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
32 4 0.08
33 44 0.92
ACGTcount: A:0.30, C:0.20, G:0.23, T:0.27
Consensus pattern (33 bp):
TTCTAAAAGGGTCAGGTTCAAAGATCTGACCCT
Left flanking sequence: Indices 59920 -- 60419
AATACAGATAGAGCGTCATATACAATGACTCTATCCTTTGGAAACCACCTATTCCTCTCATCGAC
TACCTTCACTAGGGTCAAGATTCATGGTATTCTAAGGGCCGGAGCAAGGGATTGCTTTCGTCTCT
TTCTTTCCGCCTGGAATGGAAGTTGTCGTTAAGCTTCTTTGGATCAATCGATAGACACTATTAGA
AGAGTACTGACGCTCTACTTCGCTTGATTCTCATGCCAGTGGACTCGTCGCTCAGCTTTAGGCCT
TATTAGCTTCATTTCTGAAGTGAGCATGAAGTCCGATCAGTATCTCCGTTTTTTCTGTCGGAGAT
ACTGAGAAAGCGTCTTTCGTGATGAAAGTAGCAAGTAACCGAATAGGGTTCAGTAGCCGAGTTCT
AAACCCTTATATATTCAGTAGCACCGAATACCGAATAGGGTTCAGTAGCCGAGTTCTAAACCCTT
ATATATAATATGAATATATCAGTATCTGCTACTGATATCTAAGGG
Right flanking sequence: Indices 60501 -- 61000
AGATGAACAAGTTCCTTTTCCTTGAAACCCTGCACCACCATGAAACAATTCTCCAAATTATTAGA
ATAAATAGAAACATTACAAAGAAAGCACACGAGCCAATAGGCTCAAGCATCTAAGGTCCCCAAAT
CATTCCAAGCCTTAGGTTACTACTACCTATATTATACCGAAAGGCTACGGCACCGCTCCGCACCT
CGGTGAACTATGTGAACTATGGATTCTCAACCTTGTCCCATTCCATCTTCTTTGACTATTTTGGC
TATTGGATGAAGCCCGATGAGAGATTGTCTTCGATATTCCCAAGACCAACCTATTAGAGTAGAGT
ACTGATCTTTCTCCAAGACCATATACTGTAACAGGCGGTGACGTTCACAGATGCCCAAAGAAAAG
AAAGTCCCACACCTTCAGTACTCTACTCTAATAGGTATGAAATTCGAGATTCAGTAGGTTGGTCA
GTCACACAAAAAGGAGTAGCGAAGGGTTCAGTTGCATTCACTTCT
Found at i:65968 original size:34 final size:34
Alignment explanation
Indices: 65885--66015 Score: 175
Period size: 34 Copynumber: 4.0 Consensus size: 34
65875 TATACCCCTT
*
65885 ACCCTTTAGAAAGGGTCAGATC-TTT-GAACCTG
1 ACCCTTTAGAAAGGGTCAGATCTTTTAGAACCTC
* * *
65917 ATCCTATT----CGGATCAGATCTTTTAGAACCTC
1 ACCCT-TTAGAAAGGGTCAGATCTTTTAGAACCTC
65948 ACCCTTTAGAAAGGGTCAGATCTTTTAGAACCTC
1 ACCCTTTAGAAAGGGTCAGATCTTTTAGAACCTC
65982 ACCCTTTAGAAAGGGTCAGATCTTTTAGAACCTC
1 ACCCTTTAGAAAGGGTCAGATCTTTTAGAACCTC
66016 TAAAAAGAGA
Statistics
Matches: 85, Mismatches: 7, Indels: 12
0.82 0.07 0.12
Matches are distributed among these distances:
29 9 0.11
30 5 0.06
31 10 0.12
32 4 0.05
33 2 0.02
34 55 0.65
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (34 bp):
ACCCTTTAGAAAGGGTCAGATCTTTTAGAACCTC
Left flanking sequence: Indices 65385 -- 65884
TCATCTCAAAGCTTAAACAATGTGAAAGTTGGTACGAGATATATAACGATCCCATCTTGCGAGAT
CGAGCTGTAAACTCCTATACAAGCTTAAAAAATCTATATGGCGATCTTATGTCACTTCGAGATAG
TCAGACGACCCTAGGAGAAAGAATTCTATCTGATTTAGACAGAGAGGGTCAACCAGATGAATACG
AGTTAGAAGAGCTTGAGCATATCTATCTTCTGCTTGACTGGTTGGCTTGTTGCCTGTGCTTTGAC
CGTAATATAATGTCGAAGCAACTCTTTCTTTATGGGTGACCGCGAACTCAAAGAAGTATCATCTT
CCATATGCTATCCCGCGTGCTCAGGATACGATTCACCAACAGCTTCCGATTCCGAGTGGAAGAGA
CTTTTGGTAATCCCTTGGATCTCTGCGTCCTGGAAGAAGACCCTGATCAATGCTTGAACGGCCTT
GACGGCAATCCACCGATCTTTCATAAAAAAGGTAATATACCCCTT
Right flanking sequence: Indices 66016 -- 66515
TAAAAAGAGAGGAGCATGACCCCACATGAACAAGTCGAAAGAGGTTGATAGAATGCAAGTTCTTC
CCACAACGTTCGTAAAGAGGTGTAGAAAGAAGTGACACTGCTATCTCCCTGCTTCATGGTGGCAA
TCTGTTGTTGAAGTTGGTAAATACGTGCATCATGACCTTTTTCTTTCTGCGACTTAAGGAGAGAG
AGTCAACCTTAATGTCAGTGATAAGTGATAATAGGAAAGGCTTGAAGGAAGAGACAGAATCACAG
CTGGTCTTCAGGATTCGACAAAAGAATCAAAACCATAGCTGTGAGGCTTAACAGACAAAGAAAAC
GGGATCCCACTGATACTACTGATCGCCCTCCAAACAAAACAACCTGAACTATATGTGACAGGGTA
GGCCAGAAGCCAGCAAAAAAGGTATTATATAATTTTTTTATTTTTAGTTGCCCTTTATGTGATAG
GGGTGCTTGCTGGAAAAGAAAGCCGGATGAAGGTGTTCAACACTA
Found at i:65976 original size:19 final size:19
Alignment explanation
Indices: 65952--66011 Score: 56
Period size: 19 Copynumber: 3.4 Consensus size: 19
65942 AACCTCACCC
65952 TTTAGAAAGGGTCAGATCT
1 TTTAGAAAGGGTCAGATCT
** * *
65971 TTTAG-AA-CCTC--ACCC
1 TTTAGAAAGGGTCAGATCT
65986 TTTAGAAAGGGTCAGATCT
1 TTTAGAAAGGGTCAGATCT
66005 TTTAGAA
1 TTTAGAA
66012 CCTCTAAAAA
Statistics
Matches: 29, Mismatches: 8, Indels: 8
0.64 0.18 0.18
Matches are distributed among these distances:
15 7 0.24
16 2 0.07
17 4 0.14
18 2 0.07
19 14 0.48
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.32
Consensus pattern (19 bp):
TTTAGAAAGGGTCAGATCT
Left flanking sequence: Indices 65452 -- 65951
AGCTGTAAACTCCTATACAAGCTTAAAAAATCTATATGGCGATCTTATGTCACTTCGAGATAGTC
AGACGACCCTAGGAGAAAGAATTCTATCTGATTTAGACAGAGAGGGTCAACCAGATGAATACGAG
TTAGAAGAGCTTGAGCATATCTATCTTCTGCTTGACTGGTTGGCTTGTTGCCTGTGCTTTGACCG
TAATATAATGTCGAAGCAACTCTTTCTTTATGGGTGACCGCGAACTCAAAGAAGTATCATCTTCC
ATATGCTATCCCGCGTGCTCAGGATACGATTCACCAACAGCTTCCGATTCCGAGTGGAAGAGACT
TTTGGTAATCCCTTGGATCTCTGCGTCCTGGAAGAAGACCCTGATCAATGCTTGAACGGCCTTGA
CGGCAATCCACCGATCTTTCATAAAAAAGGTAATATACCCCTTACCCTTTAGAAAGGGTCAGATC
TTTGAACCTGATCCTATTCGGATCAGATCTTTTAGAACCTCACCC
Right flanking sequence: Indices 66012 -- 66511
CCTCTAAAAAGAGAGGAGCATGACCCCACATGAACAAGTCGAAAGAGGTTGATAGAATGCAAGTT
CTTCCCACAACGTTCGTAAAGAGGTGTAGAAAGAAGTGACACTGCTATCTCCCTGCTTCATGGTG
GCAATCTGTTGTTGAAGTTGGTAAATACGTGCATCATGACCTTTTTCTTTCTGCGACTTAAGGAG
AGAGAGTCAACCTTAATGTCAGTGATAAGTGATAATAGGAAAGGCTTGAAGGAAGAGACAGAATC
ACAGCTGGTCTTCAGGATTCGACAAAAGAATCAAAACCATAGCTGTGAGGCTTAACAGACAAAGA
AAACGGGATCCCACTGATACTACTGATCGCCCTCCAAACAAAACAACCTGAACTATATGTGACAG
GGTAGGCCAGAAGCCAGCAAAAAAGGTATTATATAATTTTTTTATTTTTAGTTGCCCTTTATGTG
ATAGGGGTGCTTGCTGGAAAAGAAAGCCGGATGAAGGTGTTCAAC
Found at i:97559 original size:19 final size:20
Alignment explanation
Indices: 97535--97573 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
97525 CAACCACATC
97535 ACCTCCAAAA-AGAGACCTT
1 ACCTCCAAAATAGAGACCTT
*
97554 ACCTCCAAAATAGAGGCCTT
1 ACCTCCAAAATAGAGACCTT
97574 CAACCTCTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.38, C:0.31, G:0.13, T:0.18
Consensus pattern (20 bp):
ACCTCCAAAATAGAGACCTT
Left flanking sequence: Indices 97035 -- 97534
TAGTCGACGTCGCTACACTAAATTGGAGGATAACCCGGGTCACTCGGGAAACCCACAACCCCAAG
AATCGGAACTAAAATGGAAGAATACCCGCATCAAGGTGGAGGTGTTCATCAACAAGAGTAGCGAC
CACCTTGGGCAAGACTTTTAGAGTAGAGTACTGAGACTCGGCCAATGCATATCGAAAGGGATGAA
TCGATGAACCCCCATCAAACCACCAAGACCTCCGCATATAGCTACCTCCTCACAAGAATACCTCG
TCTCTCTTGGCTGTTCGGTCCTCTTTGTCATGTCTACTACCTATATTATACCGAGGTCGAACCCA
TTGATGGTTCTCGAGGTGTTGATTCAAGTCGAACGAGGCATCACGTTCAGAGTTTTTTACTGTGT
CAAAAAACCGAGTTGATGAGCCTTTATTCTTGAATAGCCGGAGTAGTTCCAGCTTCCAGTAGCTG
GGTACCATCGGCTTCCTTATTCTTCTAAGGATGGTCAACCACATC
Right flanking sequence: Indices 97574 -- 98073
CAACCTCTGGGCCTCCCGCTAGTGTTGTTCCCGAGGTGCATTCATAGATTGATGGTATATGATGA
TATGATGAGATAGTACTGAAATTGGAAACCCCCAGCATCCCCGCGTGTCATTTACTGTAGATTGA
CCATCGTATACTATATGCAAACATGGGTCCTTTGGCATTGGCATTGATTTGGCCAGGTACTCACT
AACCAGGGCTCAAAATCTCCTTCAACTCCGAACTAGTAGTAGAAAATAGGGAACGATGTGAAAGG
TTGTTGACTCGCGTTCCCTATTGTCTACTACTAGTCTAGTATAGTGGTGCGGCGGGGGTTCATGG
GCCTTTCCCAACTGCTGCAAGAAGACGAGGTGATTTCTGGAATTCCTGTGATGCATCATGGTGTG
GTTGTTTGGAAGAGATGGGGGTTTCATCGAACATTGCTACTATCCTCACATGGTTCCACTCCATT
CCAGCAGCTACCTTCGGACACGGTACTGATATATATTGTTCGGCT
Found at i:100590 original size:20 final size:20
Alignment explanation
Indices: 100565--100605 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
100555 TCGATTCCGA
100565 TCAGTACTCTACTCTAATAG
1 TCAGTACTCTACTCTAATAG
100585 TCAGTACTCTACTCTAATAG
1 TCAGTACTCTACTCTAATAG
100605 T
1 T
100606 TCCGGTCGAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (20 bp):
TCAGTACTCTACTCTAATAG
Left flanking sequence: Indices 100065 -- 100564
CTCGCATCTCGGTCACTTTTACTTTCTCGTTATTTCGTAATGCCCTAGGTCTGGTTCCGTTTAGC
TTCACTGTCACTAGTCACCTGCTCTGTACGTGGTCGCTGTCATTTTCGATGTTCATTGGCATCAC
GCTATTGGGAGTTGAGAGATATGGGCTGCATTTTTTAAGCGTCTACTTACCCGAAGGCGTGCCCC
TGACGTTAGCACCGGTACTCGTACTACTCGAGCTCATCCCTCATTGTTTTCGCGCATTGAGCTCG
GGCATCCGTTTATTTTCCAATCTGATGGCCGGGCATAGTTCAGTCAAGATCTTGAGTGGTTTCGC
GTGGACGATGCTCCTACTGCAAGATCGATGCTATTTGATTGGCGATCCGGGAACTCTGTTGGTGG
TGCTAGCGTTAACTGGGTTGGAACTCGGGGTAGCGATCTTACAAGCTCATGTTTTTACTATCTTA
ATCTGTATCTACTTGAATGATGCTCCAAATATCCATCGATTCCGA
Right flanking sequence: Indices 100606 -- 101105
TCCGGTCGACTGCCCAAGCCGCCCTACGGTGATACGCAGATCAAGGTATATTGGTGGTGGCTCGG
TATAATATAGATAGTGGAGTCATTGAGTGGGGGCATTGGCAAATCATTGTGATTGAATGGGAGGT
TGTGCATGGTGGTAGTATGATCATGGATATGCGTTGCCAAGTATAGAGTCTTTACTGTTATTTCA
CAACGGGGGATGGTTTTCCACCTTCAAGTCCATCAGTACTCTTCTAATAGTGTCTAGCTAGTCAC
GGCGTCAGTACTCTACTCTAATAGTCTCAACTATCGGCATCCTTCCAGTGGTCCAGCCTGGGTTT
TCTTGGCGTCACGTACCGTAGTAGCAAGTAGTGGGATGTGTTGGGCATGATAGCTATGATACAGA
GATGGCAATGGGTCGAGTGCGGAGCGTGGGGTTCGAATGCACTGTTCCGCTGCGGTCATATGGCA
TTGTCGAATGCATCATCTGAGTGAGACCTTTCAGACAAAGTACTA
Found at i:139477 original size:11 final size:11
Alignment explanation
Indices: 139461--139485 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
139451 CTGTAGTTCC
139461 CGATCACTGTG
1 CGATCACTGTG
139472 CGATCACTGTG
1 CGATCACTGTG
139483 CGA
1 CGA
139486 GCGTAGCCGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.20, C:0.28, G:0.28, T:0.24
Consensus pattern (11 bp):
CGATCACTGTG
Left flanking sequence: Indices 138961 -- 139460
TTATTTCTTACTTCGGTTCTCATCCCTACCGGTACCGGTAGATAGTCATTGATCTGGTGATGCCA
TGAGCTACAACAAATCCAGTACTAAGTTGGAAATATAGGCCGGGCACCAGGGTCCCTGTATGCTC
TGCTGGTGCAAAGCAACCAGGGTCCCTGTATGCTGGTGGCAACCAGGTTGTTATACAAGTTCGGG
AATACTTACTTCGCCTAGTACTGTTGATTATGGAGTTGTTTCACTGATCGTCGGTAGAAGACGTA
GCTAGTAGAGAATATTCCCGAATGCAAAGAAAAAAAGTAATGGAAAAGGAGTTTATGGATCATCA
GAGGAGAAGTAGGAACAGAACCATCAGAATGTTGCCTAGTCGTTACCTTATGCCTGTGCTCATGC
AGGGCATAGGAACTATACACCGGAAGTGAACAAAATAAGACTAATCATGGGACTATACCTAGCAT
CATTCCTACGCCTGTTGGTGCATCACAAGTTGGTCCTGTAGTTCC
Right flanking sequence: Indices 139486 -- 139985
GCGTAGCCGCTCGCCTCCTTTCCTACTCGCCCGGCTAGTCCAGAATGGATCTCTACTTATGGCCC
GCGTAAGATCCTCTCCCCTCCGTGGCCGCCTGCCTGGTTGGTGTCTCTGCTGCTTCCGGTTCTTA
TCTGACTTTTGGTATTCCACCGCTCAAAGCGCCTTCGGGCCATCGCCGGTAGCTGGTGAAACAAC
TAGAGAAGGTAAAGAACATAACCCAAAAAGAATCAACAGAAGCAATGCCATAACCAGGATCCAGT
AACGAGAACACCCGGAGAAGACCTCAGGCTGTTCTACAGGATTCCGAAGAGCCTCATGTTGCCGA
GTTAGTACTGAATAGAGCGTTGCTTACTTCCTTATTATATACCGGTGCTTGTACACCTATAGTCA
AGCGATAGCGGGAGAACCCATTAACGAAAGCGCAGAAACTCCTATATACATAAACCAACGATCCC
TTGAATATCTCTCCTATGCCACTAAGTCTTCTGTCCCCGAGCTAA
Found at i:154985 original size:24 final size:24
Alignment explanation
Indices: 154953--155005 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
154943 GCTTTGTGCA
154953 CCTGGTTGCACCACAATAGAATTG
1 CCTGGTTGCACCACAATAGAATTG
154977 CCTGGTTGCACCACAATAGAATTG
1 CCTGGTTGCACCACAATAGAATTG
155001 CCTGG
1 CCTGG
155006 GAAATCACTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (24 bp):
CCTGGTTGCACCACAATAGAATTG
Left flanking sequence: Indices 154453 -- 154952
ACATTAGTCGAATCGGTAGATACATAATATGAACCAGATCCGGCATCAATACCAGGATTGGAAAA
ATCTACAATATCGGTAGCTATATCAGTAGTCCGTTCGGGCCTCTCGCCTCCGGCTCCTGGGTCTG
TAGGAAATATGGCAGCTAATGCTTTAGCAGTCAACCCAACATTTGGGAATACAATGTGATACAAT
GATGATCTCCGGTATAGGCGAATAAGAGCTAAAGCTATTCCTCACGAGATATATTCTAAGAAGAA
AGGCAAGACAGATACGAGTTCCTCAGGAAAGTTAGAATAATGAGCACCGGATTCCTCACTTGATT
TATCCCTAGGTATTTGCCCGGCGGTCTCACATCACGAAGTACGGAATTTTTCTCATAAGGCTCAA
GCGGGATCTCCAAGAGGTGAAAAGACCTCCTTTCAAACCCTTCATTCAGGCCTAGTTACTTTTCG
ATCGTATCTCATGATGCGTAGGTCAATTATTCATAGCTTTGTGCA
Right flanking sequence: Indices 155006 -- 155505
GAAATCACTTCGTTCATGACGAACAGTGGGCTTATGTTTACAATCTGGGTAATCCATTCCTGTAA
TGGCAAAAGGACTCGAAACAGTGAATATAATGCCATGACTAATCGTGGAGCTAAAGGAGCTAACT
CCTTTCTAACATATGCTCATGTAGCCGCCTTCGGCTACAACCAAACCAATGCTTCCAGCATACCC
AGCAACATAACTGCAGTTCATACCAAGATTATTTGGCCTAGGATCCGGTGGTGAAGAAGATATGG
TTTCGTACTTGTTTGGTGGTGAAGGCCATTCTATGGAGTTGGCACCTCCGAGGGGCATTATTATC
ATATTTCATTCAAAATGCCTTGGGAGTCCTCCCGGTTAGGGGTTTCGATGATCATAAACTAAGGT
AAGAAGTAAGAATGATTCATAACCCGAATCTTTAGAAATAAAGTGAGTTCGCCCAGCCCATGATT
AAGTTTGGAATATAACGCCACCGGGTAGACTCACCCTCGCAAATA
Found at i:317381 original size:30 final size:30
Alignment explanation
Indices: 317347--317417 Score: 96
Period size: 26 Copynumber: 2.5 Consensus size: 30
317337 ACCTGTATGC
317347 TATGCTGGTGCAACGCAACCAGGAGACCTG
1 TATGCTGGTGCAACGCAACCAGGAGACCTG
*
317377 TATGCTGGT---A-GCAACCAGTAGACCTG
1 TATGCTGGTGCAACGCAACCAGGAGACCTG
317403 TATGCTGGTAGCAAC
1 TATGCTGGT-GCAAC
317418 CAGGTTGTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
26 24 0.69
27 1 0.03
30 10 0.29
ACGTcount: A:0.27, C:0.24, G:0.28, T:0.21
Consensus pattern (30 bp):
TATGCTGGTGCAACGCAACCAGGAGACCTG
Left flanking sequence: Indices 316847 -- 317346
AGTACGATCGTACCTTGATACAGAGATTCTCAAGCCATTAGGCTCACGAGCAAGAAAATACTGAA
GCTACCGGGGAATCATAAATACTATGAGAATATGCAGGAAGTCTACGATGAGTAGGCTAGTAACG
ATCTGGATCGACCACCCCAGGTAGCCCGTTGTTGCGCCGGAAATCGCCTCCAACTAATAAAATAG
AAGAAGAGAGGGATCCAACCGGAGTAACGCGGGATCTGTCTGGAAAGACTCAAACCATGTCGACA
CCCAGATGTGCCGTTGCTGTTACGCCCGATGAGTCCGCCTATGCTTGTATTCCATTACCGGAGGT
ATGGGTTCCGTTGAAGCACAAGAAACTACATAAGATCAATGGGTCGACTGAATCCCAGCTATGTC
CAACAGTTGCAGCCCCCGGAAAAGAAGGCGAATCATATGAATCAACGATGGCTAATGGTGCAGCA
GCACCAGGTTGTTATACAACTGGTGCAACCAGGGTACCTGTATGC
Right flanking sequence: Indices 317418 -- 317917
CAGGTTGTTATACAACTCTCCTTCATCTTCTAGTTTTATAGCTTTAGCTCTACGCCAATACCCGG
TGGTCAAAGAACCATATGGGTAAACTACTAGAGAAATCGATCCGAAACCCCGTACTGAGTCAAAT
GATTGGAATACCGCATGAGCACTTCCTGAAGATCTACCGAGTCCAGTCCCTAATGATCCAGTATT
CGACATCTCAATGGGTTTAACCAGCTTCCTACTGGTGGTTCTGTTGTCAACTATCGCCTTTGGGG
CATATGTCGTACACTCCTACTGGTTCGGCTGTTGGTCCCACCGTTGTAAACGATATAATATCATC
TGGGAGTACCCCAAAGTTATAGCTCTGACCTTACATCTGCGGGCAGAGATCGAAGATCCGGAAAT
TACTCCAATAATGCCAAATGGCTGATTCTTCGCATAAACCAATAACACAATCAACCAGGTAATCT
CCGGAGATTGGAGGAATTATGTCTATAGCTAGTATCGGTAGCAGC
Found at i:317399 original size:26 final size:26
Alignment explanation
Indices: 317361--317421 Score: 113
Period size: 26 Copynumber: 2.3 Consensus size: 26
317351 CTGGTGCAAC
317361 GCAACCAGGAGACCTGTATGCTGGTA
1 GCAACCAGGAGACCTGTATGCTGGTA
*
317387 GCAACCAGTAGACCTGTATGCTGGTA
1 GCAACCAGGAGACCTGTATGCTGGTA
317413 GCAACCAGG
1 GCAACCAGG
317422 TTGTTATACA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.28, C:0.25, G:0.30, T:0.18
Consensus pattern (26 bp):
GCAACCAGGAGACCTGTATGCTGGTA
Left flanking sequence: Indices 316861 -- 317360
TTGATACAGAGATTCTCAAGCCATTAGGCTCACGAGCAAGAAAATACTGAAGCTACCGGGGAATC
ATAAATACTATGAGAATATGCAGGAAGTCTACGATGAGTAGGCTAGTAACGATCTGGATCGACCA
CCCCAGGTAGCCCGTTGTTGCGCCGGAAATCGCCTCCAACTAATAAAATAGAAGAAGAGAGGGAT
CCAACCGGAGTAACGCGGGATCTGTCTGGAAAGACTCAAACCATGTCGACACCCAGATGTGCCGT
TGCTGTTACGCCCGATGAGTCCGCCTATGCTTGTATTCCATTACCGGAGGTATGGGTTCCGTTGA
AGCACAAGAAACTACATAAGATCAATGGGTCGACTGAATCCCAGCTATGTCCAACAGTTGCAGCC
CCCGGAAAAGAAGGCGAATCATATGAATCAACGATGGCTAATGGTGCAGCAGCACCAGGTTGTTA
TACAACTGGTGCAACCAGGGTACCTGTATGCTATGCTGGTGCAAC
Right flanking sequence: Indices 317422 -- 317921
TTGTTATACAACTCTCCTTCATCTTCTAGTTTTATAGCTTTAGCTCTACGCCAATACCCGGTGGT
CAAAGAACCATATGGGTAAACTACTAGAGAAATCGATCCGAAACCCCGTACTGAGTCAAATGATT
GGAATACCGCATGAGCACTTCCTGAAGATCTACCGAGTCCAGTCCCTAATGATCCAGTATTCGAC
ATCTCAATGGGTTTAACCAGCTTCCTACTGGTGGTTCTGTTGTCAACTATCGCCTTTGGGGCATA
TGTCGTACACTCCTACTGGTTCGGCTGTTGGTCCCACCGTTGTAAACGATATAATATCATCTGGG
AGTACCCCAAAGTTATAGCTCTGACCTTACATCTGCGGGCAGAGATCGAAGATCCGGAAATTACT
CCAATAATGCCAAATGGCTGATTCTTCGCATAAACCAATAACACAATCAACCAGGTAATCTCCGG
AGATTGGAGGAATTATGTCTATAGCTAGTATCGGTAGCAGCCGCA
Found at i:349491 original size:24 final size:24
Alignment explanation
Indices: 349464--349516 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
349454 TTGTTAAGAC
349464 CCAGGCAATTCTATTGTGGTGCAA
1 CCAGGCAATTCTATTGTGGTGCAA
349488 CCAGGCAATTCTATTGTGGTGCAA
1 CCAGGCAATTCTATTGTGGTGCAA
349512 CCAGG
1 CCAGG
349517 TGCACAAAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (24 bp):
CCAGGCAATTCTATTGTGGTGCAA
Left flanking sequence: Indices 348964 -- 349463
ATTCGGTACTATACCGATACTAGCTACTACTCCAATGAGTTCTTTTCTTCTAATAGTGCTCTAGT
ATAGGTTCATACCATTGGTATTCACTGGTTACCAGTTTTGGAGGAATCTGAACCATTAGTTGGCC
GAATGGGTTAGGCTGTCTTGGTGTATTAGTTCTAGCAACGGAGGAGGATCCGGAGTAAGCTTTGG
AGCCGAATATTCATATCAATCAACAAACCGAGCAACTTCCGTAGAGAATATTATTACGTATTCCC
ATCGAGCTAACACCCTTAGCCCAACCAATTACATTGGTATAGTATATCCAGTCCTAGATAGATCG
GATGAGTTGTAGCTACTCCGGGGTTGAGGGGCAATCCTATTCCAACCGTAAGCATCATTCTTTAT
CTTCTCCCGGCATCAATTGTTTTATTCTATTATACTGTATTCCAACCATGGAATAAACCATGGTA
CCGATGACTGGTAAGCTACTTCCATTTGATTGAATTTGTTAAGAC
Right flanking sequence: Indices 349517 -- 350016
TGCACAAAGCTATGAATAATTGACCTACGCATCATGAGATACGATCGAAAAGTAACTAGGCCTGA
ATGAAGGGTTTGAAAGGAGGTCTTTTCACCTCTTGGAGATCCCGCTTGAGCCTTATGAGAAAAAT
TCCGTACTTCGTGATGTGAGACCGCCGGGCAAATACCTAGGGATAAATCAAGTGAGGAATCCGGT
GCTCATTATTCTAACTTTCCTGAGGAACTCGTATCTGTCTTGCCTTTCTTCTTAGAATATATCTC
GTGAGGAATAGCTTTAGCTCTTATTCGCCTATACCGGAGATCTTTACTTTGACTTTATCTCTCGG
TCGTATTACTTTGATTCTTCTTCCGTAAATGCATGGAACATGGTAATGGTTGGAAACCATGGCAG
AAACCATGCATGGTATTCAGCTAATCAACTCATATAGTCAAATAAAGAAAAGAGATACCGGTAAA
AGAAGATATTTGGTTAGATGCGCAGGGACGCAGGTGCTAAACTTG
Found at i:376232 original size:13 final size:13
Alignment explanation
Indices: 376211--376240 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
376201 TTCATTTTAG
*
376211 AAGGGCCTGTTAT
1 AAGGACCTGTTAT
376224 AAGGACCTGTTAT
1 AAGGACCTGTTAT
376237 AAGG
1 AAGG
376241 GCTCAGATGG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (13 bp):
AAGGACCTGTTAT
Left flanking sequence: Indices 375711 -- 376210
ACTTTACAATATATATCAGTACCGTTTCTAGTAGAAAAGTCGACCCACTTTTTTCTCTTGGTGGT
AGTAGCCACTATTAGAGTAGAGTACTGACGGTTGTTGTTGTATTGGTAGTTCAACGATGGTTTGA
TTGAGTTGGCAGCTCACCTATTCAACACTATTAGAGTAGGGTACACCTGGTGCCCTTCGGAAACG
ATGGTGTTGCATTGGCGTTCAACCCCCCGTGTGTGCGATTGGGTGGTGTGGTACACTTCATGGAT
GATGGCCAGCTGAGGGGTTTCAAACCTCGCGAGGAGTACGGTAGAGTCTTGATAGTAGCTCTGAG
TAGTTAGCTAGCGAAGCGCAATCGCACAGGACATACCAGGGTAGCAGCGTACAGGTTGAAGGTCG
TTCGAGCAATTCTTTGACCACCTTCTAGCTCCGCCTGATTTCAGAGAGGCGGAAGTCAACAAGTG
TGACAGGTCCTTATAACAGGCCCTTCTAACAGGTATTCATTTTAG
Right flanking sequence: Indices 376241 -- 376740
GCTCAGATGGGAAAAAGCATGAGTTTCCAGCGTGCGGAAGAGAGCTCGTGACTCAGTCCGCTCAC
CCAGCTCCTGTTTTTTGACCGGGGAGAGAAGTGAGCCTATGGTACCGCCCTGCTATGCTACTGCT
ACTACACCATTTCCGGAAGAAGGAAGGAAAGGCCAATCGGCCTGATCCGCGCGAAGAGGGTCCTG
CTTTCGGTGGTAGTAGGCCTAACAAGGTCAAGAGAGGACGGGACTGCTTCCTCGTGTACTTATTG
ATCATCTCCTGCTTTCGGTGGTAGTAGGCCTAAGCTTGATGAATCGAAATTGCTTTTTTGTGCTT
CAGGTACCTCTTCCGTTTTTCGTCGGCTTTCGACTCAGTATATGATCCAGGTACCTCTTCCATTT
CGCTTGTAGTCCCTAGCAGTGGTTTCCGAATCGGTGTCCTTTGTCAAACTATCTATCGCTGTAGG
ATTCCTATTCAAGATCAAGAATCGCCCCTATCTCTAAGATATTTG
Found at i:380602 original size:13 final size:13
Alignment explanation
Indices: 380584--380608 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
380574 TTGAAGTGGC
380584 GGACTTTATATGT
1 GGACTTTATATGT
380597 GGACTTTATATG
1 GGACTTTATATG
380609 CTAAATACCA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.08, G:0.24, T:0.44
Consensus pattern (13 bp):
GGACTTTATATGT
Left flanking sequence: Indices 380084 -- 380583
CCTGGTGGTTCAAGTCGAATGAGAGCATTGGGGCCATTATGTACTGAGCTGTTCGGGAGACATGG
TGCCGGAGCCAATCACGCGGGAAAGAGGCATATGGGGTTCGATCGATGTATTCATCTGGGTGCAT
GGCAACGGGTTGAAGCGGCCTTCGGATCATCCATCCACTATCCTTCTGAACGTGACTGATTTTTG
GCCTTCGGATCTTATACGTAGCAATACCATGTGCCCCATATCAAGACAAAGGGCGACGTTTTGTC
CATGAGTGGCTCAATATTGAGGTACGCCACCACCAATACCACCACGTACTACCCTATTCTGATTC
TACGGTACTCTTATATTATAGTGATAGAATAGTACCTGAGCAATGACAACTCAATCACAAGAGAT
GAAATGGCAACGGTCACGCGGACGACCAATGGGGCTACTAGTGCACCGGGGCATATACTGGAGTT
GAGAGGGTCAGGATACCACTATAGGTAAATATAGGTTGAAGTGGC
Right flanking sequence: Indices 380609 -- 381108
CTAAATACCAATCAAGTCCTGTCAAGGATGTCAAAATGGTGACGTTGGCAGGGTCATGTCAATGG
TGCACCTACTTGTGGAGCTCAGCGATTTGCTGACCTTTCAGTGTTCCGACCATGAGCCAACTGTC
AACTCGACCTCAACTCGTACTATGATGAGAGAGATGAGGTATTTCAACTGCTCCGATCTCTCTTT
CCAGGATGCGCCCACGACCACCATATCAATGACAATGGGCGGGCATCCCCTTGGCTGCCAGCTGC
TCGACCAGTCCCCGCTCGAGTACGGTGTTGAACAGGTGTCAAACAAAGAGGTAGCGCGGCGCCAA
CTCAACTGCTCATACGACTATGTCTACTACCTATATTATACTGTGTGCACCGAGACAGTATAATA
ATAATATAGGTAGTAGAGACAGTCTAATAATAATATAGTGGGCTCACCAGTAGTATACTCTTCAT
GATGGTGGGGTCAGATGGCTCGGGACAGCGGAAAAAGGTTGAGAG
Found at i:382504 original size:12 final size:12
Alignment explanation
Indices: 382487--382516 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
382477 TCTATATAGT
382487 CTATAGGCACCA
1 CTATAGGCACCA
382499 CTATAGGCACCA
1 CTATAGGCACCA
382511 CTATAG
1 CTATAG
382517 CGGTGCCTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.33, C:0.30, G:0.17, T:0.20
Consensus pattern (12 bp):
CTATAGGCACCA
Left flanking sequence: Indices 381987 -- 382486
CTGGTCAACTGGTTGGTTTGATGATGAGATAGCCACTGCCGGAACTGCAACGCCAATGTCTTCGA
CTCGACAGTATGGGGGCTGGTACTGATATATATTGCCGGGCCACTCGAATCGGAGCAGCGCTGGA
CCTGGTACTGATATATATTGCAGGTGTACTACGTTGTTCGGAACCCGGATATCCACGAACATAGT
CTGCATTCAAATAGAGCCACCACTCACCCCCGTTGACCCTGCCCCATGCCGTCCGGTACGCTGGT
ACTTATATATATTGAATACCGAGGTGCTCTCGAAGCGGAAGGACGATGAAATAGGTACATGACGA
GTATGGCCAACTCCGAAGACCGCCTGGTCATTCCCAGACAAAAATTTCACAGTGTGCTCCAGGCG
ATTATACGTCGGTATAATCTAGTTATGTTATATAGTAGGCTACCTATATTATACCGAGGGTACAT
GAAGTATCCCTCGGTATAATCTAGCCAGGTACTCTTCTATATAGT
Right flanking sequence: Indices 382517 -- 383016
CGGTGCCTATAGTGGTGCCTATAGTGGGCCGACTATATTATACCTTCTACTACCTATATTATACC
GAACCAGGGCTCGGGGATCGGACCGGCGGTTCAGGCTAAAGAGCGCGCGTTTCTGAATCCGTCAA
ATCGTCCAATGTCGTTGAGCCGCTATTCGTCAACCAAGAGAACATCCCTCTTCTGCTTTGGGATG
CTTGATGCTATAGATATAGATATACGGTCTGACAAGCGTTTCACGGATAGGCCAACTCAATATAT
ATAAGTACCACGGGCAGGCGCCATCGATTCTACTACTTATATTATACCGAGTTGTTAGGAGGCTC
AGAAAAGTCATCGGTGTCGGAAGAGCTAAGGTGGTAGTAGACATTCCGAAAGAACTTAGTCGATT
AGTCGAGCTGATGTATCCTGACCCTTTAGAAACCGAATAGGGTTCAGTAGCCGAGTTCTAAACCC
TTATAGATGAAGTAGCAGCCCTTTCTAAAGGGTCAGGATAGGGGG
Found at i:382541 original size:12 final size:12
Alignment explanation
Indices: 382511--382543 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
382501 ATAGGCACCA
*
382511 CTATAGCGGTGC
1 CTATAGTGGTGC
382523 CTATAGTGGTGC
1 CTATAGTGGTGC
382535 CTATAGTGG
1 CTATAGTGG
382544 GCCGACTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.18, C:0.18, G:0.33, T:0.30
Consensus pattern (12 bp):
CTATAGTGGTGC
Left flanking sequence: Indices 382011 -- 382510
TGAGATAGCCACTGCCGGAACTGCAACGCCAATGTCTTCGACTCGACAGTATGGGGGCTGGTACT
GATATATATTGCCGGGCCACTCGAATCGGAGCAGCGCTGGACCTGGTACTGATATATATTGCAGG
TGTACTACGTTGTTCGGAACCCGGATATCCACGAACATAGTCTGCATTCAAATAGAGCCACCACT
CACCCCCGTTGACCCTGCCCCATGCCGTCCGGTACGCTGGTACTTATATATATTGAATACCGAGG
TGCTCTCGAAGCGGAAGGACGATGAAATAGGTACATGACGAGTATGGCCAACTCCGAAGACCGCC
TGGTCATTCCCAGACAAAAATTTCACAGTGTGCTCCAGGCGATTATACGTCGGTATAATCTAGTT
ATGTTATATAGTAGGCTACCTATATTATACCGAGGGTACATGAAGTATCCCTCGGTATAATCTAG
CCAGGTACTCTTCTATATAGTCTATAGGCACCACTATAGGCACCA
Right flanking sequence: Indices 382544 -- 383043
GCCGACTATATTATACCTTCTACTACCTATATTATACCGAACCAGGGCTCGGGGATCGGACCGGC
GGTTCAGGCTAAAGAGCGCGCGTTTCTGAATCCGTCAAATCGTCCAATGTCGTTGAGCCGCTATT
CGTCAACCAAGAGAACATCCCTCTTCTGCTTTGGGATGCTTGATGCTATAGATATAGATATACGG
TCTGACAAGCGTTTCACGGATAGGCCAACTCAATATATATAAGTACCACGGGCAGGCGCCATCGA
TTCTACTACTTATATTATACCGAGTTGTTAGGAGGCTCAGAAAAGTCATCGGTGTCGGAAGAGCT
AAGGTGGTAGTAGACATTCCGAAAGAACTTAGTCGATTAGTCGAGCTGATGTATCCTGACCCTTT
AGAAACCGAATAGGGTTCAGTAGCCGAGTTCTAAACCCTTATAGATGAAGTAGCAGCCCTTTCTA
AAGGGTCAGGATAGGGGGAAGATAAAAACTATCTTTAGCGGTTCG
Found at i:391977 original size:30 final size:30
Alignment explanation
Indices: 391941--392093 Score: 306
Period size: 30 Copynumber: 5.1 Consensus size: 30
391931 CCTCTCCCTT
391941 CCTGACCCTAAGGTGTCAGATCTTTTAGAA
1 CCTGACCCTAAGGTGTCAGATCTTTTAGAA
391971 CCTGACCCTAAGGTGTCAGATCTTTTAGAA
1 CCTGACCCTAAGGTGTCAGATCTTTTAGAA
392001 CCTGACCCTAAGGTGTCAGATCTTTTAGAA
1 CCTGACCCTAAGGTGTCAGATCTTTTAGAA
392031 CCTGACCCTAAGGTGTCAGATCTTTTAGAA
1 CCTGACCCTAAGGTGTCAGATCTTTTAGAA
392061 CCTGACCCTAAGGTGTCAGATCTTTTAGAA
1 CCTGACCCTAAGGTGTCAGATCTTTTAGAA
392091 CCT
1 CCT
392094 TTATTAAGTA
Statistics
Matches: 123, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 123 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (30 bp):
CCTGACCCTAAGGTGTCAGATCTTTTAGAA
Left flanking sequence: Indices 391441 -- 391940
AGTCATCAAGATGCTCCAAAATCCATACCTGAAGCAAAGCTGCACATCCAAAGAAAGTGCCATGC
TTCCGGGTTGAGCAATAAGACAAAGAAAGGATAGTCTCGGCAAGTATCATGTGCACCACCGACAC
TTCCGCATTCATTTTCTCCACCAAAGAAGTGAGCCGACAATCAAGAATTCCGGGCTCGCCGGGAA
AGACAACACTCCCAAAGATGGCAAAGGCCAAGGCATTGATTGCCCAAGCTAAACTAAATAGAAGG
ACTCGGCTGAGTTTGCCCCTCGCCTACAGGAGTTATGGATCGATAGACTCTTCCTGCGGCCAGGC
ATCAATTCGAAAGTGAGGACACCGTCCCTCTTATCTGGATCTGTCTTTCCTCGGTCTCTGACTAT
ATAGGAAGAGTACCTGTCTCGGGTATCATACGATTCTGCCATACGATTCTCTTTCTTTTTTATCG
GTGGAACATCTTCTACTCTTTCGGACTTTCGAATGCCTCTCCCTT
Right flanking sequence: Indices 392094 -- 392593
TTATTAAGTACTGGGCTAAGGGCGTCGCTCCTAGTAGCAGGTTGACTATGTCCACAACTGATTCT
TTCCCGTAAGAGGATAATAGTTGATAGTGGGCGGGCCTAAAGGCAAGTAAAAGTCCCCGCTAACT
CCGAACTATATAGAGTCAGTACTTGCCTACGAAATGGGTACATAGGCACTGAAGCCCAGTCCTTT
CCACAACCTATCTTTGTAGCACCCTATTTTGAAAGAATCTGTTGTTGAATAAGATAGGGGGAGAC
TCCTTCTCGTAGGGCTCAATAACTGTATTTTAGAGTACAAGTCAGACGATGCAGACGCAACGCTA
TACCTAGAGTCTGATTTGTTTTCACAGTCGATTGAAATCCTACACAGAACCTCCATAGGGAAGGG
CGTCTAGCCAGATCGAGAAGAACCTTCAAATGATAGAACTAGAGTCGGGAGCCGCATAGATAGGC
ACGATAGAAGGAAAAAAAGGCCTTCCTTCCAGGACCTATGTCCCG
Found at i:395165 original size:32 final size:32
Alignment explanation
Indices: 395129--395201 Score: 146
Period size: 32 Copynumber: 2.3 Consensus size: 32
395119 AAGACAACTT
395129 CCTCACCCTTTAGAAAGGGTCAGATCTTTGAA
1 CCTCACCCTTTAGAAAGGGTCAGATCTTTGAA
395161 CCTCACCCTTTAGAAAGGGTCAGATCTTTGAA
1 CCTCACCCTTTAGAAAGGGTCAGATCTTTGAA
395193 CCTCACCCT
1 CCTCACCCT
395202 ATTCGGGTCA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 41 1.00
ACGTcount: A:0.26, C:0.30, G:0.16, T:0.27
Consensus pattern (32 bp):
CCTCACCCTTTAGAAAGGGTCAGATCTTTGAA
Left flanking sequence: Indices 394629 -- 395128
GATGTCAAGAGGTACATTGACTGATGGTGCGACAGTAGGTGAAGGCCTATACTATAGACCGATTG
ACTAAGTAGCAGAAAGATTCCCGTCTTCAGAATGAGATACTGCATTGGCCGATGTAGATGAAGAC
TTGTTCGGAGGATGGCATCTATCTGCAGAGTGACCTGTTTTCAACCACCCTTATTACCACTATAT
AGACAGAGTACCGTGCCTCTTCCCTCCTATTCAATAACCTTATATTATAAGAATACCCGAATTGT
GGGTCAAACCCCCTCGAGATGATACATTGAGAGCAGCATGATCTGATGCACTATTTACCGGATTA
CTCATAGCTTTCTGGCCATTGAGAAGGATGGGCCGTACTTTGTTGATCGATCGTAGAGAATCATT
CCCCATTTGAATATATTCGAACTCATGTCGAAGACCAGCAAGTAAATGAAACACTTTATCCTTCT
CTATTTCTGCAAAAAAAAAGACAAAATTTGAAATAAAGACAACTT
Right flanking sequence: Indices 395202 -- 395701
ATTCGGGTCAGATCTATGAGAACCTGGTGTTCAAGAAGCGCTAATATATTTCATGCCGCAATTCA
AGTAGAAATGAAGATGGTTACACTACAACAACCCCTTCCTATCCTGGTAACAGCTTCCTTCTTTA
TAGGACATCCAATGCCCAACCTTAACATCCCTATTATATTCTAATAGTGGGGGTCCTTCACAATC
CGGATTCTGCTATTGCTCCTGTCGAAGTTGTTTAAGCCTTTATGCACTCATAACATGCATAGCTC
GTTTCCACTATTGACCAAAAGACATGTACGCAGAGTGTTGGCTACAGGAGGCGGTGGGATCCACT
AAGGCTTTCAGACTAGCTGAATAAATGGGACAGGAGCTAATAACCAATTCTCATGCAAGGGATAG
ATCCGTTATATCCGGAGCAGATGCACAACAAGTGTTAGGAGAACGCGATGATTGGCCCAAAAGTC
AAATATGTAGCCGGTAAAAATGAGTCAGACCCGCCTTACGAACTA
Found at i:411702 original size:5 final size:5
Alignment explanation
Indices: 411692--411733 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
411682 ACTGCTACTT
411692 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG AT
1 ATATG ATATG ATATG ATATG ATATG ATATG ATATG ATATG AT
411734 TGAAGGTGGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.40, C:0.00, G:0.19, T:0.40
Consensus pattern (5 bp):
ATATG
Left flanking sequence: Indices 411192 -- 411691
TTCCGTCAGGCTCGTCGAGATCACTATCGATCTCAATTGGTCTATTTATTCCGATGGCGTGGAAC
TTTAACAGCCTTCAGCTGAGAGACATCATCACATGGGTCCGGACCCCAAGCGTCTATAGCTCTGA
GAGTACTGTTTGCCCAGTTGAGCTGTTGATGTATCAGACTTTTACCTTCTGGCTTCCCTTTGGTC
ATCACAATGAGCTGAGCTAAATGAGCAGCATCGCCATCCACTTGTAAGATATCAAATAGAGGGAA
TACTGTAGCTTCGATCTGTTCCAAGTGGTAGATTACGGAGATGAAAGTCCTCGATCTTGCCGCTC
ATCTGAAACTTTAAGGCAAAAAAAGAATACTGGCGGGACTCCCGTTCGGTCTAAGCCTCCTCTCC
TATCGGAGAGACAGGAGCTACAGAGGGAACAGCCCCTGCTGAGCTGAGTGAATCCATGGTCTACC
AAGTAGCATGTGAAAGGCCGATGTGATATCCCTGAACTGCTACTT
Right flanking sequence: Indices 411734 -- 412233
TGAAGGTGGATTTCGAGCGATTCTCTGCGAGTGCCATCATCAGTACTCTTCTAATAGTGATCGCC
ATGCAGGTTTTCCTCATGTGAGTCTGATCTATAGGCAGTTTGTCAAGTCTCGCCCTTGGGCAAAC
AGGCGGAACAGCATTCAGGCCTTACCAGGTCGGGACATTCAGTGAGGACCTGGTCTTCACCTAAT
TGTGGAAGAGGGGTGAGTATCAACTCTCTCTCGCGCCTTTCTTCAGCTTGTTCCTGTTCGTCTAT
TCGGGACGGGTTTTCCCACATACATGAAGAGAAGAAGAGAGGAGACCTGATATTAAGGTGTCAAG
GCGAGAAGGCCACAAGTGGAAGCAACCTGGTCATTCAGTTGACTCCGCCAGTCCGTGCTTGCTGT
CATGCTGGTCGTTCTTTATCCTTATCAGTGTATAATATAGGTAGTAGGGCCGGTTTTACCTACTA
TTGGATTTGAACCAATGACTCTCGCCGTATGAAAGCGATACTCTA
Found at i:414464 original size:34 final size:34
Alignment explanation
Indices: 414425--414575 Score: 302
Period size: 34 Copynumber: 4.4 Consensus size: 34
414415 TCAGTAGCAG
414425 CCCTTTCTAAAGGGTGAGGTTCTAAAAGATCTGA
1 CCCTTTCTAAAGGGTGAGGTTCTAAAAGATCTGA
414459 CCCTTTCTAAAGGGTGAGGTTCTAAAAGATCTGA
1 CCCTTTCTAAAGGGTGAGGTTCTAAAAGATCTGA
414493 CCCTTTCTAAAGGGTGAGGTTCTAAAAGATCTGA
1 CCCTTTCTAAAGGGTGAGGTTCTAAAAGATCTGA
414527 CCCTTTCTAAAGGGTGAGGTTCTAAAAGATCTGA
1 CCCTTTCTAAAGGGTGAGGTTCTAAAAGATCTGA
414561 CCCTTTCTAAAGGGT
1 CCCTTTCTAAAGGGT
414576 CAGGAAAGAG
Statistics
Matches: 117, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 117 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (34 bp):
CCCTTTCTAAAGGGTGAGGTTCTAAAAGATCTGA
Left flanking sequence: Indices 413925 -- 414424
CATCGCATGATCGGTTGGTTACGATTGGTCAGGTCATCTCTGCATATTGCCTTCGGACCATCCAG
CAGTCCACCTTTCGGATCCGAAGCACCGTATTGCTTCATAGGCAGTTCGTTCGCAGTTCAACACC
GCCACTCGAGTACACTCTATCGTTTTGCTACTACTACGACTATCGATCACAACCAACCCCATGAC
ACCTTTGTTCAACGGATCCACCCACCAACGACGATTCTGAATACGGATACGGGAACTCAACTGAC
TTCTTGCTCGCATCCCAACCTCCGTTATAGACTCTTTATGAATCGCATCCGCCCATTCGCTCTCA
ACTCAATACCAGATTCCAATCGTTCTTCGGAGTTGAATCATAGAACACCTACAGCTGTGGTATGC
TGAACCCCCTTCCACAATGACAATACGGGCTCCGAAGGTTCTAAAAGATCTGACACCTTACCGAA
TAGGGTTCAGTAGCCGAGTTCTAACCCTTATAGATTCAGTAGCAG
Right flanking sequence: Indices 414576 -- 415075
CAGGAAAGAGATATGTTATGTCTTTCTTCTCTTCCTGGCAAAGATCGATGTGGCTTCTTTGCTAC
TAACATCATTCGATACAATCCTTCCGCAGGGTTGAACAAGGGATTGACTTTCCTGATCTAGCTAC
TTTCGGTGCTAGGATTCTGGTATATGTTTTCGCATGGTCCTGGCCAGTCACTGTAATCGAATATC
GAATAACTGTGGTTTCAATGTCGCCCTTGCACAGTATCTGGGTTATAAGTGTGCTTATCGGTAGT
TGTGTCTTCAATCATAGAGGTAGACGAAAAGAGCTACTTGAAACATTCATTAAGACCTTAAACAA
GAATAGTGTTTCAATTACAGTTAGCTTTTGAGGAGAGTATTGGGTTCCCCCTGCTGTACTATCTC
GACCAACGGGAAGAGGGACAGCCGGAGGGATTGACTGACTTGTTTCGGAGAGTTCATTTATTATA
ATATAAGGATTCAGTCAGTAAGTCTATAATCAGTACTCTTCTAAT
Found at i:421472 original size:13 final size:13
Alignment explanation
Indices: 421451--421480 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
421441 TTCATTTTAG
*
421451 AAGGGCCTGTTAT
1 AAGGACCTGTTAT
421464 AAGGACCTGTTAT
1 AAGGACCTGTTAT
421477 AAGG
1 AAGG
421481 GTCGTACCCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.30, T:0.27
Consensus pattern (13 bp):
AAGGACCTGTTAT
Left flanking sequence: Indices 420951 -- 421450
CAGAATGCCGGAAAGCAAATCTCTTGACTTCCTTTTCACTTCTAGGCTTTTACCAGAGAAGAAAG
AGATGAGATTGACCAAATCGGAATGCGCACCTTCTTCATACTGTAAATTATCATGCGTACTTCCC
TCCAATGCCTCAGTTTAGGCTATGACTGATTGATGAGCCTTCTATCTCCTTCGGTCAAGCAAGGC
TGAATGAATCAAGGGACGAACAACTTATAGGCTTTCTGCCTTCTCTTCTAGCTCATTCGATTCCC
TATAGGTTATAGGTCTAGGTCTATGCAAAGAGAACTGGGCTAACTTGACTTGCTCTGCTCCCATC
CACTGATGTAAAGATTGGGCATGGGAGAGGTGAATTTGACGAAAGAACCTTTCCTTACCCTTTCT
AAAGGGTCAGGAGCGGTATCAAAACTATTAGATATTAGAGTAGAGTACTGACTTTCTCTTTCGCG
GGGTTTCGGACACAGGAAAACCCTTATAACAGGTATTCATTTTAG
Right flanking sequence: Indices 421481 -- 421980
GTCGTACCCACACCCGGCTCAATAGGAAGAGGAGGGAGGACCTCGTTTTGCTATTTCTCACGTAG
CGCTCAGAAGGAAGGGAAGAGAAGCTGCTCAGTACTCTACTCTAATAGTCAGTACTCTACTCTAA
TAGTGAGGAGTCCGTCAATATATATAAGTAACAGCTGTTTTCACGAATCCCAATGGAAAGATTGC
AGCTGGGTTGATCAGGGGGCAGGGTCTACTACCTCGAACATCATCTAGTTCAATCCTGTTTAGGA
AGATCCCACTATTAGAGTAGAGTAATGACACTATTAGAAGAGTACTGAAAGAAGAATAGCTAGAA
GGGAGGAATGTCCGATTGTGATAGAATAGTAGCCTATCTACGAATGCTATGGGTCACTCGCGGTA
GTATTTGCTTTTCCTGTGACCGAATCGACTGCGAACTCAGGGCCTTATATTATGAAAATATCAGT
CAATTCACTCTTTTGTTTCAGAGCTCTTGCTGAATCAGCCGAGAG
Found at i:421599 original size:20 final size:20
Alignment explanation
Indices: 421574--421614 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
421564 GAGAAGCTGC
421574 TCAGTACTCTACTCTAATAG
1 TCAGTACTCTACTCTAATAG
421594 TCAGTACTCTACTCTAATAG
1 TCAGTACTCTACTCTAATAG
421614 T
1 T
421615 GAGGAGTCCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (20 bp):
TCAGTACTCTACTCTAATAG
Left flanking sequence: Indices 421074 -- 421573
ACTTCCCTCCAATGCCTCAGTTTAGGCTATGACTGATTGATGAGCCTTCTATCTCCTTCGGTCAA
GCAAGGCTGAATGAATCAAGGGACGAACAACTTATAGGCTTTCTGCCTTCTCTTCTAGCTCATTC
GATTCCCTATAGGTTATAGGTCTAGGTCTATGCAAAGAGAACTGGGCTAACTTGACTTGCTCTGC
TCCCATCCACTGATGTAAAGATTGGGCATGGGAGAGGTGAATTTGACGAAAGAACCTTTCCTTAC
CCTTTCTAAAGGGTCAGGAGCGGTATCAAAACTATTAGATATTAGAGTAGAGTACTGACTTTCTC
TTTCGCGGGGTTTCGGACACAGGAAAACCCTTATAACAGGTATTCATTTTAGAAGGGCCTGTTAT
AAGGACCTGTTATAAGGGTCGTACCCACACCCGGCTCAATAGGAAGAGGAGGGAGGACCTCGTTT
TGCTATTTCTCACGTAGCGCTCAGAAGGAAGGGAAGAGAAGCTGC
Right flanking sequence: Indices 421615 -- 422114
GAGGAGTCCGTCAATATATATAAGTAACAGCTGTTTTCACGAATCCCAATGGAAAGATTGCAGCT
GGGTTGATCAGGGGGCAGGGTCTACTACCTCGAACATCATCTAGTTCAATCCTGTTTAGGAAGAT
CCCACTATTAGAGTAGAGTAATGACACTATTAGAAGAGTACTGAAAGAAGAATAGCTAGAAGGGA
GGAATGTCCGATTGTGATAGAATAGTAGCCTATCTACGAATGCTATGGGTCACTCGCGGTAGTAT
TTGCTTTTCCTGTGACCGAATCGACTGCGAACTCAGGGCCTTATATTATGAAAATATCAGTCAAT
TCACTCTTTTGTTTCAGAGCTCTTGCTGAATCAGCCGAGAGGAGCAATATCTGAATCGACTCGTC
CGAACCTGGTCTTGAAACAACATCGGACAGTGGATTGAGCTCCAAAGCATACGTTGTGGCTACCT
ACGGTTGGGGGTAGATGGTTGGTTCGTAGGCATCCGAATAACCGA
Found at i:427236 original size:25 final size:25
Alignment explanation
Indices: 427202--427251 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
427192 CTTATATATA
427202 TAGTGGACATGATGTGTCCATCGAT
1 TAGTGGACATGATGTGTCCATCGAT
427227 TAGTGGACATGATGTGTCCATCGAT
1 TAGTGGACATGATGTGTCCATCGAT
427252 AATGGAATCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.28, T:0.32
Consensus pattern (25 bp):
TAGTGGACATGATGTGTCCATCGAT
Left flanking sequence: Indices 426702 -- 427201
GCACACAAACTTAATGAGTAAAGTATAAGCCTAAGGATCACGACTAAATGCAGAGAGATAGCTAT
TATATTCTAATAGTTGACTCCCCTCGCTCTTCAACAATTCTGTGTAAGTTAAGCTTCTCGATCCT
CCTCCTCCTGCTGAGCCAATGAGCTCCAATCAGGCATGAAAGCACGAATTCAATAATTCAACCAC
GAGGGATGCCAAGCAGCTCTGATTCTCCTCCTAGCGGGGGCTACTCACTCATTGTAGTCGTTAAC
CTCCTCAACGGGCCAATAGACAGAAAGTTAGTGCTTCTACCCGACCGTAATAGTCTCACTTCGTT
CATAAAGAGCTTAGCAAACATCTCAGACATAACTGGTAGAGAACTAACTAGGAGAAGAAAGACAA
GCAATACAGTCATATTACAGTTTAGAATAATAGAATCTCTTATTAGCTTATGAAGGAAGGAAGCA
AGTGTAGCTTTGAAAGCAGCAAGGAGTGCCGGGTACTTATATATA
Right flanking sequence: Indices 427252 -- 427751
AATGGAATCTTTCTCTCCTATCTCTTAGCAGTTGAGGACAAAAAGACGGGGTTTACTAAATGATA
ACACTTCAGATTGAACTACTAGGAGTGGAATCTGTCTTGAGGACAAAAAGACGGGGGTGGACTTT
ATATGCTAAATACACCCCACAACATTTATGCAATTCGGCCAGAAGTTGTGTGGACGAAGGCAACT
AATGGTCGATCACTCGGGTTTCTGTCACTATTAGACGATATATTATTTATTGTCTTATTGTCTGC
ATCTATAAAGACTATACAAGACGATAATCCGATCTTCCGATAATCGTCTTCTTGTCTGATTGTCT
GCTCCTTTGATAAAACAGAGCATGAGTGAGTTAGGGTATTACATACCCCCTACCAAGTAGTCTTG
ATGGGGATTAAAAGAAGAGTCTCATTTCCTGACCCTATTCGGATCAGATCTTTTAGAACCTGACC
CTTTCTAAAGGGTGAGGAATGGCAATCTCGTTTCGGCCTGGCCTT
Found at i:428687 original size:63 final size:67
Alignment explanation
Indices: 428574--428710 Score: 201
Period size: 63 Copynumber: 2.1 Consensus size: 67
428564 TTAGGGAGGG
* *
428574 TCAGGTTCTAAAAGATCTGACCCTTTCTAAATAAAGGGTGAGGTTCTAAAAGATCTGATCCGAAT
1 TCAGGTTC-AAAAGATCTGACCCTTTCT-AAGAAAGGGTCAGGTTCTAAAAGATCTGATCCGAAT
428639 AGGA
64 AGGA
428643 TCAGGTTC-AAAGATCTGACCC-TT-T-AGAAAGGGTCAGGTTCTAAAAGATCTGATCCGAATAG
1 TCAGGTTCAAAAGATCTGACCCTTTCTAAGAAAGGGTCAGGTTCTAAAAGATCTGATCCGAATAG
*
428704 GG
66 GA
428706 TCAGG
1 TCAGG
428711 ATATACTCGA
Statistics
Matches: 65, Mismatches: 3, Indels: 6
0.88 0.04 0.08
Matches are distributed among these distances:
63 41 0.63
65 1 0.02
66 2 0.03
67 13 0.20
69 8 0.12
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (67 bp):
TCAGGTTCAAAAGATCTGACCCTTTCTAAGAAAGGGTCAGGTTCTAAAAGATCTGATCCGAATAG
GA
Left flanking sequence: Indices 428074 -- 428573
ATATCAGTACCAGTGATGCTGCTCGTCCGCTCGACGTGGATCCCTATTATTATTCCTAGTTCCAC
CTTCTTGACATAGTTTCCGTCTCTTGAATACCAACTTTCTGCAGGGGTGGATTGAGCGGTGGCAA
CGTCCGAAAGGTATGATTGAGTAGTAGACCCTTCCGTGTTTGAAACGGCTTAAGAGGCGAGAAGA
AACCTGATACTTATATATATTGTGAAAGAAGGTATGAAATCCTTAGCTCCACCACGTGTGAAGCA
TACGAGAATTGAGACTGCTACCAGCCCCGGGAATTCCATAGCTGTTAGCTCTGACCCCAAAACAT
CCAAGGTACCTTGAAATGACTAGGAGCTCGCATGAACCCATATCCACCCTCAAGAGAACCGGAAC
TAGCTGGAAGAGAAAAAGAAGTAGACCTTTTAGCATTAGCTGGCGGGGAACTAAGAGAGAGTTCA
GAAGGTTCTAAACCCTTATATATTCAGTAGCACCTTTAGGGAGGG
Right flanking sequence: Indices 428711 -- 429210
ATATACTCGATGAAATTATGAATATTCAATTATGAATGAAAATCGCAACTACTGGTCTCCCATAC
CTCAATGCTATAGTTCCTACGACTTTCGACAAAAATCAAACCGCAGTGCCGACACACAGTAGGAC
CCCCATTTCAACTGCATATGAGGCATACCAGTCCAAGAAGAAGAGAATGATGCTTTGATGATACC
GACGCTACTACCTCACGTGGATCTATTGGCCTTCCAACCCCAACCCATATGAATGTTTTTGATGA
AACATCGGTATAATATAGGTAGTAGAATGCCCTTTGAACTCGAAAGCATGCTGGGCGTTGAGCGC
TAAACCGTACCGCCACTTCAACGACTATGATCTTCGTCTCCGAACCTCATGTCCCAATACTCCAA
ACCAACCACTCATGAGCCCCAAAATGCAATGCCAGAACTCCCCCGCGCAATACACTGGCAGGAAG
CGCGTACCCCCCGATGATACCGCTCCCCCTCCTCACCCTTCTGTC
Found at i:428709 original size:31 final size:31
Alignment explanation
Indices: 428608--428710 Score: 122
Period size: 31 Copynumber: 3.3 Consensus size: 31
428598 TTCTAAATAA
*
428608 AGGGTGAGGTTCTAAAAGATCTGATCCGAAT
1 AGGGTCAGGTTCTAAAAGATCTGATCCGAAT
* *
428639 AGGATCAGGTTC--AAAGATCTGACCCTTTAGAA-
1 AGGGTCAGGTTCTAAAAGATCTGATCC----GAAT
428671 AGGGTCAGGTTCTAAAAGATCTGATCCGAAT
1 AGGGTCAGGTTCTAAAAGATCTGATCCGAAT
428702 AGGGTCAGG
1 AGGGTCAGG
428711 ATATACTCGA
Statistics
Matches: 60, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
29 12 0.20
30 3 0.05
31 19 0.32
32 11 0.18
33 3 0.05
34 12 0.20
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (31 bp):
AGGGTCAGGTTCTAAAAGATCTGATCCGAAT
Left flanking sequence: Indices 428108 -- 428607
CGTGGATCCCTATTATTATTCCTAGTTCCACCTTCTTGACATAGTTTCCGTCTCTTGAATACCAA
CTTTCTGCAGGGGTGGATTGAGCGGTGGCAACGTCCGAAAGGTATGATTGAGTAGTAGACCCTTC
CGTGTTTGAAACGGCTTAAGAGGCGAGAAGAAACCTGATACTTATATATATTGTGAAAGAAGGTA
TGAAATCCTTAGCTCCACCACGTGTGAAGCATACGAGAATTGAGACTGCTACCAGCCCCGGGAAT
TCCATAGCTGTTAGCTCTGACCCCAAAACATCCAAGGTACCTTGAAATGACTAGGAGCTCGCATG
AACCCATATCCACCCTCAAGAGAACCGGAACTAGCTGGAAGAGAAAAAGAAGTAGACCTTTTAGC
ATTAGCTGGCGGGGAACTAAGAGAGAGTTCAGAAGGTTCTAAACCCTTATATATTCAGTAGCACC
TTTAGGGAGGGTCAGGTTCTAAAAGATCTGACCCTTTCTAAATAA
Right flanking sequence: Indices 428711 -- 429210
ATATACTCGATGAAATTATGAATATTCAATTATGAATGAAAATCGCAACTACTGGTCTCCCATAC
CTCAATGCTATAGTTCCTACGACTTTCGACAAAAATCAAACCGCAGTGCCGACACACAGTAGGAC
CCCCATTTCAACTGCATATGAGGCATACCAGTCCAAGAAGAAGAGAATGATGCTTTGATGATACC
GACGCTACTACCTCACGTGGATCTATTGGCCTTCCAACCCCAACCCATATGAATGTTTTTGATGA
AACATCGGTATAATATAGGTAGTAGAATGCCCTTTGAACTCGAAAGCATGCTGGGCGTTGAGCGC
TAAACCGTACCGCCACTTCAACGACTATGATCTTCGTCTCCGAACCTCATGTCCCAATACTCCAA
ACCAACCACTCATGAGCCCCAAAATGCAATGCCAGAACTCCCCCGCGCAATACACTGGCAGGAAG
CGCGTACCCCCCGATGATACCGCTCCCCCTCCTCACCCTTCTGTC
Found at i:432526 original size:34 final size:34
Alignment explanation
Indices: 432495--432662 Score: 320
Period size: 34 Copynumber: 4.9 Consensus size: 34
432485 TTTAGGGTAT
432495 GGTTCTAAAAGATCTGACCCTTTCTAAAGGGT-A
1 GGTTCTAAAAGATCTGACCCTTTCTAAAGGGTGA
432528 TGGTTCTAAAAGATCTGACCCTTTCTAAAGGGTGA
1 -GGTTCTAAAAGATCTGACCCTTTCTAAAGGGTGA
432563 GGTTCTAAAAGATCTGACCCTTTCTAAAGGGTGA
1 GGTTCTAAAAGATCTGACCCTTTCTAAAGGGTGA
432597 GGTTCTAAAAGATCTGACCCTTTCTAAAGGGTGA
1 GGTTCTAAAAGATCTGACCCTTTCTAAAGGGTGA
432631 GGTTCTAAAAGATCTGACCCTTTCTAAAGGGT
1 GGTTCTAAAAGATCTGACCCTTTCTAAAGGGT
432663 ATGGATAGGT
Statistics
Matches: 133, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
34 132 0.99
35 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (34 bp):
GGTTCTAAAAGATCTGACCCTTTCTAAAGGGTGA
Left flanking sequence: Indices 431995 -- 432494
AACTAGATAAATTACCCTACGACTGTCGGTATAATATAGATAGTAGAATTGCTTTGATGTACTTG
AAGAGGTCTCAAAGGCTTTATTCTTTACTGGCTGTAACGTAACAAGCGAAGCACTTACACTCGCT
CGATTCCTTCCTTTAGAACTGAAACTGGCTCTAGATGAGTAGGACTTGAACCCTAAATGGCTGGA
CCGACAGCAAAGGAACCTGGTCACTCGCTCTAACCCATATTCCATAGAGTACTTCACTTCCTCTC
TCCCTTACACCCTGAAACTAGGGCTGTAACGTACTCATACCTTCAAAAGGCGGCGGAAAATAAAG
CATAAGGACTCGAAGAGGGTTGAAAAGGCCCTTTTCAACTATATAGGGTCAAGTACCGTAGATCT
GACCCTTTCTAACCCTTAGATATCAAGTAGCCGAGACTCGAAGAGGGCTCTTTTTTATAAAATGA
GGTATGGTTCTAAACCCTTATATATAAGTAGCACCTTTAGGGTAT
Right flanking sequence: Indices 432663 -- 433162
ATGGATAGGTATGTAAAAAACCTCCTATATCCATGGAACCTTTTACTCCCTAGGGATCACTCCAT
TCCCAACTATGGAAAAGAAAGTCTTACCGACTACGTATAGACATTTTGTCTCGCAAGGAAATTGG
CAGCTATCTAGCTATTATCAGCTATAGAACTTGAATGGCTGTGACGCTTATAAGCTGTATAGCTA
ATTATATAGCTAGCTATAGAGAAGCTAGAGACAGGTATTCTAGCATATAAAGAATCCTAACTATT
GAATGAAAATACTGGAAACTTTCTTAGCAGAACTTCCAGATAGACACTATTAGAAGAGTACTGAC
TAGTTTAGTTGATCTGTTACAACATCTTGGTCTTAGTATGAAGACAAACAGTTTACGGATCAATC
TAGATAAGCTATCGAGAATAGATACTATAAAGATCTAATCTCTCACTCTCCCTATCCCTTTCGAG
CATTCCTTTTTCTACGAGACACACTATTAGAAGAGTACTGACGTT
Found at i:436770 original size:38 final size:38
Alignment explanation
Indices: 436707--436824 Score: 200
Period size: 38 Copynumber: 3.0 Consensus size: 38
436697 TTGAACCTGA
436707 GGTCAGATCTTTTAGAACTCGGCTACTGAGGTTGAGAAAG
1 GGTCAGATC-TTT-GAACTCGGCTACTGAGGTTGAGAAAG
436747 GGTCAGATCTTTGAACTCGGCTACTGAGGTTGAGAAAG
1 GGTCAGATCTTTGAACTCGGCTACTGAGGTTGAGAAAG
*
436785 GGTCAGATCTTTGAACTCGGCTACTTCAGGTTGAGAAAG
1 GGTCAGATCTTTGAACTCGGCTAC-TGAGGTTGAGAAAG
436824 G
1 G
436825 TGCTACTGAT
Statistics
Matches: 76, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
38 50 0.66
39 17 0.22
40 9 0.12
ACGTcount: A:0.26, C:0.16, G:0.31, T:0.27
Consensus pattern (38 bp):
GGTCAGATCTTTGAACTCGGCTACTGAGGTTGAGAAAG
Left flanking sequence: Indices 436207 -- 436706
CTGGGTCTTGTATTGTGTGTTGATTCGAAGCTCGGAAAGGCCACGATTCACATCGCCTTTCAGAG
CCTTCTAATCCATTTGAGGTAGATTTATAATAAGAGTTTGGATTGAGTGCGTACTGACTTTCTTG
GGATTGAGATGGCTTTCTTGTAGCTTGAGAAGTGGTCTCTCGAGCCTTGTTATTCTGAGTCCGAT
CTATGCTCTGGTGTAAAACTCCCCGCTTTCGTCTTCCATGGGTTGCTCTCGCCTCTGGTTCGCTA
TTGCCTCCGACGAAGGCAACAAGCTCTCTTCCGTCAATAGAGGAACTCTTACTAATCCACTAGTG
GGCATACAAGCAGCAACAGGATCTCTTTATAGCGCTTTCTTTAATGGAGTAGATCCCATCCCTCT
CTTCTATTTCATATCCTCATCCTCGTCGGAAATCAAAAGCCTGCCACCGCCACTCCTCTTTCTTC
GTATCTTTCCTAACCCGTTAGAAAGGGTCAGATCTTTGAACCTGA
Right flanking sequence: Indices 436825 -- 437324
TGCTACTGATATATTATATCAAGGGTTTAGAACTCGGCTACTGAACCCTATTCGGTAAGGTGCTA
CTGATATATTATATATAAGGGTTTAGAACCTTGAAACCCCCATGGTTTGTCTCTCTGTGTTGACT
CATTCAGTGGGCATTTTTAGGTCCAATCACCCTCAAGTGTTCCGCACCCGTCACCATCAATCACA
TTCATCACAGCCTGTCAGTACTCTACTCTAATAGTATCGTACCTCCAAACTATTAGAGTAGAGTA
CTGAAGCACCACCTTCGTATTCCCTCCCCGTTGAGCATGGTGTTTCAGAGAACGCGCAGAACCCA
TCCCGTACTTTTTCAATCGTTTCACTCGCCCTTGAAGTCACTATGTCATCAAGTCGGTATAATAT
AGATAGTGGACATCGATGAGAGTTGGCGGTACTATTAGAGTAGAGTACTCACTATTAGAAGAGTA
CGGAGAGCAGCAACCTTGAACTGGTCCTTGATCGGTATAATATAG
Found at i:439451 original size:29 final size:29
Alignment explanation
Indices: 439415--439521 Score: 88
Period size: 29 Copynumber: 3.3 Consensus size: 29
439405 TGAGGTTCTA
439415 AAAGATCTGATCCGAATAGGATCAGGTTC
1 AAAGATCTGATCCGAATAGGATCAGGTTC
** * *
439444 AAAGATCTGACCCTTTCTAAAGTCAAGGGTGAGGTTC
1 AAAGATCTGA-----TCCGAA-T--AGGATCAGGTTC
439481 TAAAAGATCTGATCCGAATAGGATCAGGTTC
1 --AAAGATCTGATCCGAATAGGATCAGGTTC
439512 AAAGATCTGA
1 AAAGATCTGA
439522 CCCTTTCTAA
Statistics
Matches: 60, Mismatches: 8, Indels: 20
0.68 0.09 0.23
Matches are distributed among these distances:
29 20 0.33
31 10 0.17
33 1 0.02
34 8 0.13
35 1 0.02
37 10 0.17
39 10 0.17
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (29 bp):
AAAGATCTGATCCGAATAGGATCAGGTTC
Left flanking sequence: Indices 438915 -- 439414
ACCGCTAGCAAACTGGACCATTTCACCACATTTCAATTGATGCAACCCAGATACACGTGCAATGC
CATCCCCATAGCCCAAGACTAGCCCGTTTGTTTCCACCGTTTGGGTACTCGTTGTGTCCAGTAGG
TGCATTCGACTCTCTAATACGCTTGTCAGTTCAGCATAATGGGTTGGTTTGACTCCCATGGAACA
TTCCGAAGATATATGACCCTTCCCTTTGAGCGATTGGTCCTTCTATGACAATAAATGAAGCTCCG
CATGTTCCATCCGAGGGGTCGAGGCCGGAAGTGCGAGTCGAGTCAATGGCTAACGACTATCGCGC
AAGGTCGGGAATGACTCGAATCAAGCACGGCATGTCCACAATTCGGCAACTGATAGGGGTGAACT
ATATAGGGTCAAGTACCGTAGATCTGACCCTTTCTCAACCAAACCGAATAGGGTTCAGTAGCCGA
GTTCTAAACCCTTATAGATGAAGTAGACCTTAGGGTGAGGTTCTA
Right flanking sequence: Indices 439522 -- 440021
CCCTTTCTAAAAGGGTCAGGAAGCCTCACTATTCCTATTTCCTATTCTAAGGCTTCATTCTTCTA
AGGACTGAATGAACTATTCTAAGTGTGGAACTGGATTCACTATTCTAAGTTCAGTGACTCTCGGG
TATCAATCGGGTAGACAGAACCATGAGCATTGTGAACCCATCTCTAAACTCAAGCTCTTGCTGTT
ATTCCATTCCCGCTCGAAAAAAAGCAAGTAAAGAAGGTGAACAGAAACAGAAAGAAGAAAGAATC
AAAAGAAGAATACTTTTGATGTGGGGGGATTGCTTTTCATAGCTATGTTTCGTACCCTTGCGATT
CTACTTTCCTTCTTTGATGGAGAGAATGCGTTGGTATAGAATCTAGCAGCAATCCTGACCCTTTA
GAAAGGGTCAGATCTTTGAACTCGGCTACTGAGGTTGAGAAAGGTGCTACTGAATATATATATAT
CAAGGGTTTAGAACCTTCTGTTAGCTCGATCTGTCTTTTCGGGCT
Found at i:439510 original size:68 final size:68
Alignment explanation
Indices: 439401--439532 Score: 264
Period size: 68 Copynumber: 1.9 Consensus size: 68
439391 AGTAGACCTT
439401 AGGGTGAGGTTCTAAAAGATCTGATCCGAATAGGATCAGGTTCAAAGATCTGACCCTTTCTAAAG
1 AGGGTGAGGTTCTAAAAGATCTGATCCGAATAGGATCAGGTTCAAAGATCTGACCCTTTCTAAAG
439466 TCA
66 TCA
439469 AGGGTGAGGTTCTAAAAGATCTGATCCGAATAGGATCAGGTTCAAAGATCTGACCCTTTCTAAA
1 AGGGTGAGGTTCTAAAAGATCTGATCCGAATAGGATCAGGTTCAAAGATCTGACCCTTTCTAAA
439533 AGGGTCAGGA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 64 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (68 bp):
AGGGTGAGGTTCTAAAAGATCTGATCCGAATAGGATCAGGTTCAAAGATCTGACCCTTTCTAAAG
TCA
Left flanking sequence: Indices 438901 -- 439400
GCTATGCCTTTCACACCGCTAGCAAACTGGACCATTTCACCACATTTCAATTGATGCAACCCAGA
TACACGTGCAATGCCATCCCCATAGCCCAAGACTAGCCCGTTTGTTTCCACCGTTTGGGTACTCG
TTGTGTCCAGTAGGTGCATTCGACTCTCTAATACGCTTGTCAGTTCAGCATAATGGGTTGGTTTG
ACTCCCATGGAACATTCCGAAGATATATGACCCTTCCCTTTGAGCGATTGGTCCTTCTATGACAA
TAAATGAAGCTCCGCATGTTCCATCCGAGGGGTCGAGGCCGGAAGTGCGAGTCGAGTCAATGGCT
AACGACTATCGCGCAAGGTCGGGAATGACTCGAATCAAGCACGGCATGTCCACAATTCGGCAACT
GATAGGGGTGAACTATATAGGGTCAAGTACCGTAGATCTGACCCTTTCTCAACCAAACCGAATAG
GGTTCAGTAGCCGAGTTCTAAACCCTTATAGATGAAGTAGACCTT
Right flanking sequence: Indices 439533 -- 440032
AGGGTCAGGAAGCCTCACTATTCCTATTTCCTATTCTAAGGCTTCATTCTTCTAAGGACTGAATG
AACTATTCTAAGTGTGGAACTGGATTCACTATTCTAAGTTCAGTGACTCTCGGGTATCAATCGGG
TAGACAGAACCATGAGCATTGTGAACCCATCTCTAAACTCAAGCTCTTGCTGTTATTCCATTCCC
GCTCGAAAAAAAGCAAGTAAAGAAGGTGAACAGAAACAGAAAGAAGAAAGAATCAAAAGAAGAAT
ACTTTTGATGTGGGGGGATTGCTTTTCATAGCTATGTTTCGTACCCTTGCGATTCTACTTTCCTT
CTTTGATGGAGAGAATGCGTTGGTATAGAATCTAGCAGCAATCCTGACCCTTTAGAAAGGGTCAG
ATCTTTGAACTCGGCTACTGAGGTTGAGAAAGGTGCTACTGAATATATATATATCAAGGGTTTAG
AACCTTCTGTTAGCTCGATCTGTCTTTTCGGGCTGCTTTCAAGGA
Found at i:455450 original size:18 final size:19
Alignment explanation
Indices: 455427--455463 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
455417 GCGATTCGTC
455427 AGTACTCT-TCTAATAGTG
1 AGTACTCTATCTAATAGTG
455445 AGTACTCTACTCTAATAGT
1 AGTACTCTA-TCTAATAGT
455464 CCTGACCGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
20 9 0.53
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (19 bp):
AGTACTCTATCTAATAGTG
Left flanking sequence: Indices 454927 -- 455426
CCACTACTCGGAATACAGGTGTTTCTGACCTCACTGCATTGAGCCAAGTTGAAATGATATCAAAC
ACAACCCACGGGACGAGTGAGGGTTGTGAGGTGTTCCAGAATGCCTGGTGAAACGGCTGCGTATT
CCTTCAACTCATGGTCGAGTGCAATGCAACCACCACTACCCGTGAGGCGATGGGGCAAGGTTTTC
GGGCTGGCAAGAGTGTGGAGTTCGGAGTGGTGCTACTATCATAACCAAAGGCAACCCAGCACGCT
ATCGCCACTCGGCCAATCGAGTCAACAGGACACCCTTGGGGGAAGGAGGAGATCCCCACTGCCAT
TTGAAAGCAGGGAATATACCCATCATCAGGTTTTGCCCAACCGCTGCTTCTTCATCGACATATCG
TACCATCTCTGACCCATGCCGTTGCCTTTTGCCTTGGCCTTGAGTTGGACACTGGCAATATCGAC
CTTGTTGGTATTGGAAGCTCAACCCCCAGCTATATGCGATTCGTC
Right flanking sequence: Indices 455464 -- 455963
CCTGACCGATCAAAGAGATGGCCAACGAAACGGAAGGCAGCCACTCGGGTCGATATCATATAGGT
AGTAGGCCTTTGGGGTGATTCAGTATCAACAGAGTGACCGCTCGAGTTGATGCCATCCATTCCAC
TCGGGACATGGCCATATCCATTCAACACGACACCCATTGCCAAGCAGTTCCTTCGGCGGTGTACG
ATTTGAGTACGATGATCCCAGCGGGTGAGACCTTCGGTTCATGGCTAGAAACCCATCACCCCATG
CGGAACGCTAGGTCGATCTGTAGTGGGCGGTGCGAAGATTGGGGTAGGCGGAGAACCGATTGACC
GTATGGATAGTTCATCAGAAGGCACCAATGGACTGTCAGGATCCCTGGTACTGATATATATTGAG
CGAGCTTGCCGTTTCACCTCCTTCAGTTCCTGACCCTTTAGAAACCGAATAGGGTTCAGTAGCCG
AGAGAGAGATTGCTTTTTAGTGGGATCCAATGCTTCAAAGCAATC
Found at i:469399 original size:33 final size:33
Alignment explanation
Indices: 469362--469429 Score: 136
Period size: 33 Copynumber: 2.1 Consensus size: 33
469352 TTCTATTCCT
469362 TGATTGCCCTGTAAGTTCAATAAGGGATTCTAA
1 TGATTGCCCTGTAAGTTCAATAAGGGATTCTAA
469395 TGATTGCCCTGTAAGTTCAATAAGGGATTCTAA
1 TGATTGCCCTGTAAGTTCAATAAGGGATTCTAA
469428 TG
1 TG
469430 CTTCTTGAAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.29, C:0.15, G:0.22, T:0.34
Consensus pattern (33 bp):
TGATTGCCCTGTAAGTTCAATAAGGGATTCTAA
Left flanking sequence: Indices 468862 -- 469361
TTCCTGTATGGCAGGAAGTCCCTCCAGGTTGTCTGGTTAACCGGGCTACCTATTCAAAGATGAAC
TAATTGCCTTTGGTTTCTTCTAATGGCAGGCCTGTGCCTCCTCTATCCCTGCTTTCCGGGGTACC
TCTTCATCTAGTATCAGACGATTCTTTAGACGATTCTATTGATTTCTTCTCGGTGCAAAACAAAG
GGGTCTATCCCTAGGACTCTTTCTCGTGAACTAGGGTCAAATAAATAGATGGATCGCCCTTTCCT
GTCCTGGAAGTTGATCCCCGTTGCCCAAAGCCAACAAAGGTTCTAAGAGTCAAGTAAATGGTGGG
ACCTCCTTCCCGATTCACTTATCTTATTGAGCCTCTCTCCTAGGGTTGGTTTTCTCATCTGACCC
TAAAGAATTATTAAACCTGAGTTAAGTAGCTCTCTTGTTCTTGGCTGCTAGACGAGGAGCTGGGT
AGAGAGATAATAGATCCTCCCCCTAGGATGGTAGCTTCTATTCCT
Right flanking sequence: Indices 469430 -- 469929
CTTCTTGAAGCCAAATAAGGGCATAAACTACTATATAGAGTCTTGAGTGCCTTCCCTTCGGAAAC
CAACTAAGGCAACTCCGATTGAATGCGGAATCCCGCTAGCCATTATTCGTATGAACTCCTAGATC
CATGAAGGGCATGGGCATCTGTAAGCCGGTGTAGCTAAGGTCACAAAATCAATTCATTCCTTCTT
AATTTGATTGAACTTACCGGTCTTAATCTAAGCTAAGAAAAGAATATTTCATAAGAAAATCCAAT
TTCCTTTTTCAATCTCAAGGGTAAAGGTTTCATTAATAATTCCAGGTGGTCCAGTGGATGGATTA
AGCCATTGATCATGGGTCAAGGACGGAACGAAGAACGAACGAAAGTATACTTTAATAAGGGTTCT
TTTTAGCGAGGTAACCCCCGGTCACTCCTACAGCAAAGGCCTTCAAGCCAACCAAGGCCGACACC
ATTCAACCGCCATTCAACGAGGGAACCCCGGATATCCCGACATTG
Found at i:471059 original size:16 final size:16
Alignment explanation
Indices: 471038--471068 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
471028 GGGAGCTAAG
471038 ACTAAGAAAGTATAGT
1 ACTAAGAAAGTATAGT
471054 ACTAAGAAAGTATAG
1 ACTAAGAAAGTATAG
471069 AATATATTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.52, C:0.06, G:0.19, T:0.23
Consensus pattern (16 bp):
ACTAAGAAAGTATAGT
Left flanking sequence: Indices 470538 -- 471037
AGAGCAAAAGCAGTAGAGAAAATGCTGTTAGGGTTCTTCTTTGTTTCTCTCACTCTGGGCTTTAT
GGCTTGTAGAGCATTCGATAATTGAGTGTTTGGGTATCGGACCTTTAGGATCATATTTCCACGTT
TCTATTTCTTTTTTTAACTTCTTGTTCGAGTTTTTCCTATCTACCAGTTCGAGTCTGGCGGGTAG
CTCTTTTCTTAGTGTTAGGACAGTTCTTGAACTTCCTTACCTCAATGTCAGTTCTTCCAAGGGTT
CATAAAGGATAGTGAAGCGGAGTCTCTCCTAGTAAGAGGGACTCGCGTAACGTCTAATAGTAATA
GTTGCTAGAGAGTCTCTCCTTAGCACTAGCGCTAAGCTATAATACCTTTAGGTTTTAATTACTTT
CCTTAGAGAGAACTACTGGTAGAATAGTAAGGAATAAATGGTTATTGACTTGAAAGCATGTGAAG
TGACCAATGGGTATTGGGCACAAACGGTAGACCAAGGGAGCTAAG
Right flanking sequence: Indices 471069 -- 471568
AATATATTAATAGCAATAGTTTGATACAGCTACGCCGGTATAATATGGGGGGTTCGGGGGGCTCT
CCCCCTGAAACGAGTTACTTTTATAATATATATTACTGGTAGAAGAGTTAGGAATAGATGTTAAG
TTACTAAAAGGTAGTGAAGTGACCCATCCATATGGGGCACTAACGGTAGAACAGAACAAAGGATC
TAAGAAAGTAGATAATAATAGAATACTAAAATACTATAGTATAGGTGTTATAATAGATAAGGATA
GATTATAACAGATTAGATGGTAACTTTCTTTCTACTTCAAAACTGAACTCCTTAGCACGAGCGCT
AAGCGATAATAATTCCTGAGTCTCTGCCCTTTAAATAATAGTGAGTTTGGGCCTATGTTGAAAAG
TCAGGACCAGTGACATATCTTGATATTAGGCTTTCTTTCAGCAGCGAATCTTCCAGACCTGTTCC
AAAGCTAGCTTATCTTTTATTTACTTTGACCGCCCAGGCAATCGG
Found at i:477513 original size:20 final size:20
Alignment explanation
Indices: 477488--477529 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
477478 GTCAGGACTC
477488 TAAGAGTTATGATAGTTCCG
1 TAAGAGTTATGATAGTTCCG
477508 TAAGAGTTATGATAGTTCCG
1 TAAGAGTTATGATAGTTCCG
477528 TA
1 TA
477530 TTCCTACCCT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.31, C:0.10, G:0.24, T:0.36
Consensus pattern (20 bp):
TAAGAGTTATGATAGTTCCG
Left flanking sequence: Indices 476988 -- 477487
TGCACCTAGGCTTTCATCGGTATTGCCTCCTTTCCTCCTTGTAGGCTCTGACAAGACCTAGACTC
GGTTACTCCTCTATTTGTTAATTTCCGTCCTCAGTGTGAAGTCTTGGGTTGAAAGTGCGTACCCT
TTGTTTACATAAAATACCATAGTATATTGGTGGCTCAAGAGCAGCTACCTATTCTCCTCTATATG
GTTATCTGCTTTTAGGTCTTAGTTCTTGATTTCCGGGCAATCCTCTATAGGACTAGCAATCTCCA
TAGCACAAGCGCTAAGCTATAATAATTCCTTGAGCAGATGTGATTGCAAATCTTCTTCATTCATC
TTCTTGGTCTGCTGAATGAATTGATCCCAGTTGTTCGAGCGCATGCTATTCTTTTGCAGTTCCCG
CTGGAGTGACGTCTTCCGGTCTAAGGCGATCAACTACCGCTGTGTAAAGATCAACTCCTGCTGCC
ATGCATGAAGATATTGCTGAAGAAAGAAACTAGAAGTCAGGACTC
Right flanking sequence: Indices 477530 -- 478029
TTCCTACCCTGACTACTACAAGGATAGATCTAAAAGCAAGAACTCAAACGCCTATGCTCCTCTTT
GCTTTGCTAGCATCCTTTGATAAGCAAGTTGAATGAGCCTTCAAAAAGAGGGGAGATACTTTTGG
CGGCCAGTACGCATCAGAGCCCCCAAACAAGCCTTTTGGACTAATCAAGATGGCCTTTAAAGAGG
CTTTCTGGGGATTTGCTTGTCATGTTTGTTTTAGCTTCGCTAGCTTTCCTTTTCAACTCGGAAGC
ACTTAGCCTTTCCAATAGCGTAAGCTGATCCAGCTGATGCGAGAGTTCCAGCTCAAGCACCTATT
TCTTTTGTACCTTCATTCAATTCAAATATCAGATAGTGATTGCGCCAATTCTTTCATTAAAGAAA
GATTAGCGCTTGCTAATTATAAGAGTTTCATACTCAATCAATTAGGGATAGACTCTATCTCTTCT
ATACGACAGGCTAGTCCCCTATGTTAACTAGCGGAGCTCTTTAAG
Found at i:499949 original size:37 final size:37
Alignment explanation
Indices: 499899--499975 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
499889 ACCTTGCTCC
499899 AGTACTATATAGACAGAGTACCCGACTCTACTCTAAT
1 AGTACTATATAGACAGAGTACCCGACTCTACTCTAAT
*
499936 AGTACTATATAGACAGAGTACCTGACTCTACTCTAAT
1 AGTACTATATAGACAGAGTACCCGACTCTACTCTAAT
499973 AGT
1 AGT
499976 CGTTTCTGCC
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29
Consensus pattern (37 bp):
AGTACTATATAGACAGAGTACCCGACTCTACTCTAAT
Left flanking sequence: Indices 499399 -- 499898
CTAGTTGATGACCTGGCGGCACTATTAGAGTAGAGTACTGGCAGCTTGCTATTGGAATCATTACA
GTATGGCGTACCGAGTAGCCACGCACGCACGACTTTCCCTTGGCGCAAGGTGGCAACTAGCAGGA
AAGGGCCTTTCCGAGCGCATCCACGAGCACCTATCGGCCACCTTGTGCTACAGGGGCCATTGGAT
CAGCTCATCTCCCGAACCAATGACAATGCTACGCTGTGGGAATGCAATACCACCAATCACACGCG
ATTCATGCACGATGTCGTAGTAGTAGCAGTAGGTGCAGACCGGCTACCCATGGCGTGACCTGCTA
CCTTGCTCCAGTACTATATTATATAGACAGAGTACCCGACTCTACTCTAATAGTGCCCCACCTTC
GATATCAGACCTCGCGACCTTCGGCGGGTTCATGGGCCAATAGTCCACTATCTATATTATACCGA
TGGTTCTGGGCATTGGGTTCAGTCATGCAGCTGGTACCTTGCTCC
Right flanking sequence: Indices 499976 -- 500475
CGTTTCTGCCATGTATGCGGTGGTTGATGGCATCCGTGCTCCACCATGCAATCGTATTGGCCAGC
TCCCCGGGCTCCTACCTCGTTTCATAGGAATACAGTTGCAATGCATTGTTCCACACTAGATAGCT
ACGGGCATCCCCTATATCATGAATGTGGTGGTGACAGAAGCAATTGAGTAGGCCATTGGTTTTTC
CAAGTGCTACTAGCGCTCGGCGGTCTTGAGCCACCGTGGTCCGTTCAGTACTCTTACGGTACTCT
TATATATACTTGAAAGGCTATATATGGATGATACCAAGCTTCCGCGGTGGTGTTTGATGGCCGGT
CCCCTTCGTCCTACCGGCTGGTCGAGCTACGACTCTATAGTGACTGGGTGAGCGCTGGGAAGTCA
ACGATCGAAATGGAAGAGGTACCTGGGGTGAAACGCGGAACCAATCAACGTCAAAGCATGCCCGC
TCGCTCCCCATTCACTTGCCTTTGGTTCGGGGAATGCGCTGGGAG
Found at i:503210 original size:27 final size:27
Alignment explanation
Indices: 503172--503225 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
503162 GCAAGCACAT
503172 GATAGTCTACTACCTATATTATACCGA
1 GATAGTCTACTACCTATATTATACCGA
503199 GATAGTCTACTACCTATATTATACCGA
1 GATAGTCTACTACCTATATTATACCGA
503226 TTCGCATCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.33
Consensus pattern (27 bp):
GATAGTCTACTACCTATATTATACCGA
Left flanking sequence: Indices 502672 -- 503171
TGTGACACAATACAACGACAAGCTCTCATCTCACGGGTAGGTACTTAACTGGACGCTAGCCTATT
TCGTTGGGAAAGTCTACCGAAGCATATGTATGTGTAGGATAGAGTCATTTCACCGTCATAAGCGA
CTTGAGGTTTCTACCCTAAAGCTCATCACCGCCTTGCGATTGAGCCACCGATTCTAGTACCTCTT
AGCGCTTTGCTCATCGCCGATTCCCTCCACTTGTTGATGTCTAGGTCTCTGAAAGCTTCCCTCTT
GGAGCTAGATGAAGGTAATTGGAGACGCTTGAGGAATTTCACATACTCGGTGACCTGCTGATTGT
GTCAAAGTCTCCGGAAGGATATGATAGGAACATATCTGAGTAGGATCTTCAGTATCCTACTGCGT
GCGTGGTACAGGAAGGGACCTAGCACTGACCTTCCTTATGGTATGGGCTCATCTACCGGATAGGA
TTCCAGTCGACCGAGTGCCCAAAGCTATTGCTCGAGCAAGCACAT
Right flanking sequence: Indices 503226 -- 503725
TTCGCATCCTCCCCCAAAGTCGGTACTCTACTCTAATAGACCACTATAGGTAAAGAACCGCACTG
GCAAGGGCACTCAATGGACATCATACCAAAGTCAAAGCGCTTCGCCTCAACTCTCTGCCGGCATG
AGCATCGCTAACAAGACCTCCATCTGTCATTTCCTACTCTCGAGTCAATTCGTCAAAGGTTCCTC
TTGATGGAATACAAAATGGCTGGATTGTGGAGCAAAATAGCCTATTGAGCAGTTGATGAACATAT
GTGTTTATACACCCTCTTTCCGTTGCTCATGAACCGTTCCTTCGTCCTCAAGTACTCTACTCTAA
TAGTACTATATAGACAGAGTACCCGACCCATTTCCCAATGCTCTGCACTCGGGGATGCCTGGCCG
GAACGTGATGCATCATATACCATCAAAGAGGAAATGCCCATATTGTGCCTTGTCGCTCTCTTCAA
TCCAACCAAAACCTCTCTCGGTATAATATAGGTAGTTTAGTATAC
Found at i:509805 original size:12 final size:12
Alignment explanation
Indices: 509778--509814 Score: 56
Period size: 12 Copynumber: 2.9 Consensus size: 12
509768 TCTATATAGT
509778 CTATAGGCGGACCA
1 CTATAGGC--ACCA
509792 CTATAGGCACCA
1 CTATAGGCACCA
509804 CTATAGGCACC
1 CTATAGGCACC
509815 TTTTTTGGTG
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 15 0.65
14 8 0.35
ACGTcount: A:0.30, C:0.32, G:0.22, T:0.16
Consensus pattern (12 bp):
CTATAGGCACCA
Left flanking sequence: Indices 509278 -- 509777
GTTGTTGGATTCGAACCTCCATTGACCGAGTGAAAAACTGACCATTCCATCTCAGGAACAAATAG
ATGCAAGATGCTGCTGGAGCGACTATGCTTTCCTCATTGACGATTGAGATCTGCTTCGAACTTGA
TGCCAGAATTGTCATCGACCACCAAGCCACTCGACCGTGCATTGCCTTGCCTTGAATTGGCCATC
TCCATATCCATAGACCCCAAAACCCATGGCCGCTCTGAAACATCAACACACTCAATCACCCCTGT
GGAACACATCCACCAGAACCATCATCTCAATAGGCAACTCGGAGGATTTCCATGTCGGTAGAGTA
AGTCCCGGTCAGTATCAGCAGGAGGGACCCTTTTGGGGGTTTCGTTCGCCGATATCACCGGTTTG
ATCCTCACCCCGAGCCACCCGAATTGGACAAGGGGACTTTGAGTTCCTGGTGCTCCAGGCTACTA
TCATTATACGTCGGTATAATCTAGCCAGGTACTATTCTATATAGT
Right flanking sequence: Indices 509815 -- 510314
TTTTTTGGTGCCTATAGTGGTCCGACTATATTATACCGAGATGTAACGACCAGGGTCTACTACCT
ATATTATACCGAGGGTTGCACTCCTCTCCTTTTCGCCCAGCGGTTCAGGTGCCCGGGTGGACATA
CCAGGGGAATGGTGTTGGCGATCTCGTTGAATGGCCAATACATTCGAGACCATCCATGCAACCGT
TGCTTGTCACATGGCCTTCGGAAACCCCCGGAGTCGTGCAATCTGAATGGCCAACCCTTCGGGCC
TATCATTCGAGTGGCGATGAAGGGTGAGCGAGTTGGAGTTCCGAAAGGCCAATGGCAACATCGCT
ATCGCCTTTCCCATCCTTCCGACCTTCTCCACTCCATTGCCAGCATACCAATCGGACCACTATAG
GCACCTTTTTTGGTGCCTATAGTGGTGCCTATAGTGGTACCTATAGTGGTCCGACCTGAATGCCT
CTCATGAACCCTCAATCCACTGCAAAACTATGAACAGTTGAAAGC
Found at i:510232 original size:12 final size:12
Alignment explanation
Indices: 510215--510254 Score: 71
Period size: 12 Copynumber: 3.3 Consensus size: 12
510205 GCACCTTTTT
510215 TGGTGCCTATAG
1 TGGTGCCTATAG
510227 TGGTGCCTATAG
1 TGGTGCCTATAG
*
510239 TGGTACCTATAG
1 TGGTGCCTATAG
510251 TGGT
1 TGGT
510255 CCGACCTGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 27 1.00
ACGTcount: A:0.17, C:0.15, G:0.33, T:0.35
Consensus pattern (12 bp):
TGGTGCCTATAG
Left flanking sequence: Indices 509715 -- 510214
TGGTGCTCCAGGCTACTATCATTATACGTCGGTATAATCTAGCCAGGTACTATTCTATATAGTCT
ATAGGCGGACCACTATAGGCACCACTATAGGCACCTTTTTTGGTGCCTATAGTGGTCCGACTATA
TTATACCGAGATGTAACGACCAGGGTCTACTACCTATATTATACCGAGGGTTGCACTCCTCTCCT
TTTCGCCCAGCGGTTCAGGTGCCCGGGTGGACATACCAGGGGAATGGTGTTGGCGATCTCGTTGA
ATGGCCAATACATTCGAGACCATCCATGCAACCGTTGCTTGTCACATGGCCTTCGGAAACCCCCG
GAGTCGTGCAATCTGAATGGCCAACCCTTCGGGCCTATCATTCGAGTGGCGATGAAGGGTGAGCG
AGTTGGAGTTCCGAAAGGCCAATGGCAACATCGCTATCGCCTTTCCCATCCTTCCGACCTTCTCC
ACTCCATTGCCAGCATACCAATCGGACCACTATAGGCACCTTTTT
Right flanking sequence: Indices 510255 -- 510754
CCGACCTGAATGCCTCTCATGAACCCTCAATCCACTGCAAAACTATGAACAGTTGAAAGCACGCC
AGACCGAATCGAGAACGAACCGGAGAGACAGACCACCCATTGCCATATGCTGAGCAGCGAGGACC
ACCAAGCAAGAAAGGGCCGATTCACTGCATGAAGAGAAGAGGTAGCAATAAGCCGAGAACAGGCG
GATGCATTTTCGACGGGATCCCGAAACCACCAGCCACCCCGACCTAATTCATGATGAGCCCACCA
ACTTCCTGGCATGATTCCCACAGTGTGAAACGACCGACATGTCCAAATAGCCAATTCCAACATCG
ACTGGTCCGAACCCACTTCCGAGCACTCCACCCATTCCCTTGCACCTGCAGCACGCCTACTGTTG
CCATTGAGTTGGTCTCTTTGATTTGAGGTCTCTTGGAATGGAGTTGGTGGTTTGATGACGATGAG
ATGAGATATGGGCCCAGGTTTTCCCTGGCCACATTCCCGGGTCTG
Found at i:510836 original size:30 final size:30
Alignment explanation
Indices: 510800--510986 Score: 320
Period size: 30 Copynumber: 6.2 Consensus size: 30
510790 GACCAGGTTT
*
510800 TCCCAGGCGCTCACTGGGATACTTCACGTA
1 TCCCAGGCACTCACTGGGATACTTCACGTA
*
510830 TCCCAGGTACTCACTGGGATACTTCACGTA
1 TCCCAGGCACTCACTGGGATACTTCACGTA
*
510860 TCCCAGGTACTCACTGGGATACTTCACGTA
1 TCCCAGGCACTCACTGGGATACTTCACGTA
*
510890 TCCCAGGTACTCACTGGGATACTTCACGTA
1 TCCCAGGCACTCACTGGGATACTTCACGTA
*
510920 TCCCAGGCGCTCACTGGGATACTTCACGTA
1 TCCCAGGCACTCACTGGGATACTTCACGTA
*
510950 TCCCAGGCGCTCACTGGGATACTTCACGTA
1 TCCCAGGCACTCACTGGGATACTTCACGTA
510980 TCCCAGG
1 TCCCAGG
510987 TCAGACCTGG
Statistics
Matches: 153, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 153 1.00
ACGTcount: A:0.21, C:0.32, G:0.22, T:0.25
Consensus pattern (30 bp):
TCCCAGGCACTCACTGGGATACTTCACGTA
Left flanking sequence: Indices 510300 -- 510799
TGAACAGTTGAAAGCACGCCAGACCGAATCGAGAACGAACCGGAGAGACAGACCACCCATTGCCA
TATGCTGAGCAGCGAGGACCACCAAGCAAGAAAGGGCCGATTCACTGCATGAAGAGAAGAGGTAG
CAATAAGCCGAGAACAGGCGGATGCATTTTCGACGGGATCCCGAAACCACCAGCCACCCCGACCT
AATTCATGATGAGCCCACCAACTTCCTGGCATGATTCCCACAGTGTGAAACGACCGACATGTCCA
AATAGCCAATTCCAACATCGACTGGTCCGAACCCACTTCCGAGCACTCCACCCATTCCCTTGCAC
CTGCAGCACGCCTACTGTTGCCATTGAGTTGGTCTCTTTGATTTGAGGTCTCTTGGAATGGAGTT
GGTGGTTTGATGACGATGAGATGAGATATGGGCCCAGGTTTTCCCTGGCCACATTCCCGGGTCTG
ACCACACTCCAATGGGGTACCTGCCTGGATGTCACGACCAGGTTT
Right flanking sequence: Indices 510987 -- 511486
TCAGACCTGGTAATGACCTGGTGAGTCTTCTGGCCAGGGACGTCCTGGTCTTTGGAGGACCTGGT
TAGTGAACACCTGGACTTGAAATGACCAGGCCTCGCTATTGAGGAATCGAGCTTCTTTGTCGTCC
TCATCGGCGTATTGGATGGATGGTCCCAAGGCCTCCAGTTCAATTCCGAGCTACCTCTGACCGTA
CCGAATGAGTAGCGATAGCACCAGTTCAATTCCACTCTGTCGTTTCTATTGAAAATACCAGGACG
TTCATTCCATTCCCATAGGTCGGATCTCATGATGCCAGCCACGAAACAACTAGCGAGGGCACCCC
AATAGATGCTGGGCGGATGGATTGCTGATACCGGATCAAGTGGCACAGGATTTGATGCTGCTAGC
GGCTCGGTACGAACACCCCAGACTCCAGCTACAAACGGATCCTCCATTCCAGTCAACATGGGAGC
GAACACCAACCAATCCATTCCCCAACCCCACTTTCGATACGCAGG
Found at i:527331 original size:24 final size:24
Alignment explanation
Indices: 527277--527331 Score: 67
Period size: 24 Copynumber: 2.3 Consensus size: 24
527267 CTTTTTTTTT
* *
527277 AAAAGCAGTGTGGGGTGTGCCTCC
1 AAAAACAGTATGGGGTGTGCCTCC
*
527301 AACAACAGTATGGAGGTGTGCCT-C
1 AAAAACAGTATGG-GGTGTGCCTCC
527325 AAAAACA
1 AAAAACA
527332 TGATCTACTT
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
24 17 0.65
25 9 0.35
ACGTcount: A:0.33, C:0.20, G:0.29, T:0.18
Consensus pattern (24 bp):
AAAAACAGTATGGGGTGTGCCTCC
Left flanking sequence: Indices 526777 -- 527276
ATAGAGTAGGCTAGTTAGATTTTCCTGCCTAAAAGCACAAATAAAGGCATTCAATGCATAACATA
AATAGAGGCATTCCTTTTCTATGGGATCGGGAATCCTTCCCCCGAATATTGAGAATTGTTCCCGA
GAATCATTTCGAAAGAGCCTCTGTCGGTGTTGGCCTTCCAATGCTGATGGATGTAGGAGATGTCT
GATGTGAGAAGTCGGACGCCGTCCCTCGGTCATCCTGAGATGATCGTTTAGGAGAGTTGAATCTA
AAGCATTATCTCTTTTTCTTGCGTAGTAACATTATCATGAATAATATGTTGACCAGCGCATTAGA
AAGGGTGCCTATAGTTTCATGGTTTGAAAGCGGCTAAAATAACTCCTTTTAAGGGTCGTTTTAGT
CATCTCCGGTCGTCTATCAGTGGAGACTAGCGTTGCGGCTGACCTGTTTGCAAAGTCGGTGTTGA
GATGAAAGCGTTCATCGGGCATTCTGTTCACTGCGCTTTTTTTTT
Right flanking sequence: Indices 527332 -- 527831
TGATCTACTTCCTGTGATGGTCTCACTGACTCGTTCAGGCCTACCCCGGATCATTCCTCCTTTTC
ATAGATGGATAATATTAAGGAAGGATGGTTGGGCGGATCGCTGGGGAAGGTGGTATCTAAAGAGG
CCCGGCTCCCGAGCGGAGAAGCGTCAGTCAAGAGCTCAGGTGGATGATTCTCATCGAGATGACCA
TGTCACGAACTGGATTTGAACCAGCACCTCTGGAAGCAGACAGAAAGAGAAGGCAGCGGGAAAGA
CGGGAGCACGAACGAGGGAGCAATGGATCGAGTCAATAGGAATCGGGGAGGAAAAGTGCCCCGAA
ACCCTTATAGCGAGCCAAAAGGAAAAAAGGAAAGAAGGGCATAGATTGAGACAGAAGGATCCAAA
GCTACCTTTCGAATAGCAGCTCACCCACTCGAGCCACTGGATGAGTCTTCCCTTGGATGATAGTG
ATCTCTAGGAGTAGCTCGTGATCCTCAGAGAATAAGCTCGTACCA
Found at i:538530 original size:14 final size:14
Alignment explanation
Indices: 538511--538539 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
538501 GATTCTATTT
538511 GTTGTATATGAATG
1 GTTGTATATGAATG
538525 GTTGTATATGAATG
1 GTTGTATATGAATG
538539 G
1 G
538540 ATCCAGAGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41
Consensus pattern (14 bp):
GTTGTATATGAATG
Left flanking sequence: Indices 538011 -- 538510
TAGGAACTCAAGGGAGTCTTAGAAAGCTTCGGAGCCAGACTAGCAGGGCTTATTCCCGGGAATTC
GAAAGCAGTCCCATACCATCTCATTCAATTGTCTGACTTTTTTTTTACTTGAACTTGAAGCTTTA
AGTTCAGAGATCAGAATCTGGAATTTCGATCGATATCAACTGCCCGGTCCTCTGTCCTTGGGCGC
CTTGATTCTATAGTCCTGTCCTATTAGTAAGAGGCGGAGAACCCTTGTTTAGTGGGAAAGTCCCA
AGCTCTAACTCCAATTACTACAAGAATAGGGGGCTCAAATCCGGGTGGGGAAATTCATCTATAAA
AAGCAAATCCCATTCCGGGCTCATCGACATCTTGAAACCTTGCAAGTCAACACGAGGAAATAGAG
TCTAAAAGAGGGCGGCTTGACTCGCGCTTAGCGCTTGTTTGGCGCCTTGCATTCGATGCCATTAT
GGGATTCACCCCTTCGACACCTTCCACCAGCATTGGATTCTATTT
Right flanking sequence: Indices 538540 -- 539039
ATCCAGAGGGTTCTCTCATTGAAGGAAGCCAACCTGTGGAAACTCATACGCGGCAAGGGAATCCA
TATTAGTAGTCCCTTAGGCTGATTCAAACATCCCTCCGAACTAGCGGGTGCCGCTAAGAAGCGAT
TCTTTCAAAATCTCTCTGCAAGACGAGAAAGCCCTCTTTTACATCCCCTAGACAAATGAATAGGA
AATGCTACAACCCATTGTTGTTCTTTTGACGATGAACCACTCCGGTACAACAAGCTAAAGTTACC
TCTACGCTTCGTCCCCGGTGCGTAGGGCCGATCCCCGTGTGCTAGAGGGAGGACCGGAAAGTTTG
TGTGAAGCATATAGTAGGTTTTTGTCTTGTTTAGGCATTTGGTGTCCTCTCTGCCGGCCTGCTTA
GCGACAGAGCCATCTTCTTTGTGGTCAGTGAGGAGGACAGGAAAATCCCCCACTCTGGCGGTTTC
TTTCTTTACAACCGGATTATACCCCGTCCGGTCCTATTTCAAACA
Done.