Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt10/NC_029039.1/NC_029039/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           565432
Total number of identified SSRs:                 12
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4
2	3
3	3
5	1
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
A	-	-	-	-	-			1								1
C	-	-	-	-	-	1			1							2
G	-	-	-	-	-	1										1
AC	-	1														1
AT	-	1														1
TC	-	1														1
AAG	1															1
TAG	1															1
TGA	1															1
ATATG				1												1
CATATA															1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
A/T	-	-	-	-	-			1								1
C/G	-	-	-	-	-	2			1							3
AC/GT	-	1														1
AG/CT	-	1														1
AT/AT	-	1														1
AAG/CTT	1															1
ACT/AGT	1															1
ATC/ATG	1															1
ATATC/ATATG				1												1
ACATAT/ATATGT															1	1