123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_029039
Parameters: 2 7 7 80 10 50 500
Length:  565432

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13772--13893	34	3.8	32	80	12	135	28	20	25	25	1.99
16721--16752	13	2.5	13	100	0	64	46	6	15	31	1.71
20787--20813	13	2.1	13	100	0	54	22	7	25	44	1.79
22858--22884	13	2.1	13	100	0	54	22	7	25	44	1.79
23142--23255	6	19.0	6	100	0	228	50	16	0	33	1.46
36211--36241	15	2.1	15	93	0	53	32	19	29	19	1.96
41717--41745	14	2.1	14	100	0	58	41	17	20	20	1.90
42449--42485	12	2.9	12	92	8	56	16	21	32	29	1.95
46164--46200	20	1.9	19	89	10	58	29	18	13	37	1.90
53776--53859	29	2.8	30	71	10	89	28	20	21	29	1.98
60420--60500	33	2.5	33	97	2	155	29	19	23	27	1.98
65885--66015	34	4.0	34	81	11	175	28	23	17	30	1.97
65952--66011	19	3.4	19	64	17	56	31	16	20	31	1.95
97535--97573	19	2.0	20	90	5	62	38	30	12	17	1.88
100565--100605	20	2.0	20	100	0	82	29	24	9	36	1.87
139461--139485	11	2.3	11	100	0	50	20	28	28	24	1.99
154953--155005	24	2.2	24	100	0	106	26	26	22	24	2.00
317347--317417	26	2.5	30	77	20	96	26	23	28	21	1.99
317361--317421	26	2.3	26	94	0	113	27	24	29	18	1.98
349464--349516	24	2.2	24	100	0	106	24	22	26	26	2.00
376211--376240	13	2.3	13	94	0	51	30	13	30	26	1.94
380584--380608	13	1.9	13	100	0	50	24	8	24	44	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
382487--382516	12	2.5	12	100	0	60	33	30	16	20	1.94
382511--382543	12	2.8	12	95	0	57	18	18	33	30	1.94
391941--392093	30	5.1	30	100	0	306	26	24	19	30	1.98
395129--395201	32	2.3	32	100	0	146	26	30	16	27	1.97
411692--411733	5	8.4	5	100	0	84	40	0	19	40	1.51
414425--414575	34	4.4	34	100	0	302	28	18	23	29	1.98
421451--421480	13	2.3	13	94	0	51	30	13	30	26	1.94
421574--421614	20	2.0	20	100	0	82	29	24	9	36	1.87
427202--427251	25	2.0	25	100	0	100	24	16	28	32	1.96
428574--428710	63	2.1	67	87	8	201	32	16	24	26	1.96
428608--428710	31	3.3	31	75	17	122	32	15	28	24	1.95
432495--432662	34	4.9	34	98	1	320	29	17	22	30	1.97
436707--436824	38	3.0	38	95	3	200	26	16	30	27	1.96
439415--439521	29	3.3	29	68	22	88	34	16	23	25	1.95
439401--439532	68	1.9	68	100	0	264	32	17	23	26	1.97
455427--455463	20	1.9	19	89	10	58	29	18	13	37	1.90
469362--469429	33	2.1	33	100	0	136	29	14	22	33	1.94
471038--471068	16	1.9	16	100	0	62	51	6	19	22	1.69
477488--477529	20	2.1	20	100	0	84	30	9	23	35	1.87
499899--499975	37	2.1	37	97	0	145	35	22	14	28	1.93
503172--503225	27	2.0	27	100	0	108	33	22	11	33	1.89
509778--509814	12	2.9	12	92	8	56	29	32	21	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
510215--510254	12	3.3	12	96	0	71	17	15	32	35	1.91
510800--510986	30	6.2	30	97	0	320	21	32	21	24	1.98
527277--527331	24	2.3	24	81	6	67	32	20	29	18	1.96
538511--538539	14	2.1	14	100	0	58	27	0	31	41	1.56

Tables:   1

The End!