Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_023338
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 459678
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:12180 original size:20 final size:21
Alignment explanation
Indices: 12143--12185 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 21
12133 TAGCTACCAA
* *
12143 CTCCTTAATGCCCGGAC-TCG
1 CTCCTTAATGACCAGACTTCG
*
12163 CTCCTTACTGACCAGACTTCG
1 CTCCTTAATGACCAGACTTCG
12184 CT
1 CT
12186 TTAGCTGAAG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 14 0.74
21 5 0.26
ACGTcount: A:0.16, C:0.40, G:0.16, T:0.28
Consensus pattern (21 bp):
CTCCTTAATGACCAGACTTCG
Left flanking sequence: Indices 11643 -- 12142
TGTTACCCAGACTTAGACCCTAAGTCATTCTTAGCGAAGCGACCCATCATAAGAATGAGATACGG
ACCTCCCGTCTTTTTCAGTCTCCCTCCTTTCCCTTTATTCTAAGTAAGTAGCGGTCCAAGTCTCC
TTCCCGACCGATCGAAGGGGGTAACAAGGGATAACTCCCAAAGAAGTAGTCTTTCATCTGCCCGA
TCCCTTACAAATTCTTCTTAGCTCTTCAGCACCTCCAATTCAGAACCTGTATGGTTCACTACGTT
CCTCTGCTCTTTTGGCTTCCTTTCTCGTATCATAGAGGATGGGCGTTCTTGCTTACTTATATTTG
CATGGCTGACCATTCTTGCTTATTCATTGCAATGCTTACTTACTGGCGAGTTCTCACTTTGGCTT
TTCCCTTATAGCCTGAAAATCGATACCTTCGCATATAGATATCGATCTTGACACCTTTGAACGGA
CTTCCCTTTAGCTGCAGCTACAAACAACTCCTTACTAGCTACCAA
Right flanking sequence: Indices 12186 -- 12685
TTAGCTGAAGCTACAAACTAGGGACTTGGAACTTGCTAGAGAAACTCGAACTGAAGCTGCTTCAG
CCGCAGATAACAAATGGGGACTACTAGCCCTAGCTACTAGGTATTAGGATACCTTTACGGACTCT
TCTAAGACACGACGAATACGCGATCGCTCATTCGTCTGGTAGTACTCAGACCTAATAAGAGGCGA
ACACCGAGGGAAGAGAAATGCAATGTCCCCTATGATTCAGACGAATAAGCGACAAAAGTCTAATA
CTTAAAGACCAACAAGTCAAAGGAGACAACGGAAAACAAGAAGCTTATATTACACTCACTGGGAA
AGAAGAGTAGTTAAAGGCATAGCTACTAGCTCTTGAAGGGAGGGAGAAAGAAGAGGCTTAGAAAG
CAGAAAGAAAGAAGGTCACTATCAGGAGCGGGGATAAAACAAGGATTTGACCTAGAAGAACAGCT
AAGGCAGAGAAAGACAATAGGTTTCATAACCCTGGCTTGAGCCCA
Found at i:57343 original size:20 final size:20
Alignment explanation
Indices: 57318--57357 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
57308 AGCCTGCACC
57318 TGCAATTCAGAGATTGATTG
1 TGCAATTCAGAGATTGATTG
57338 TGCAATTCAGAGATTGATTG
1 TGCAATTCAGAGATTGATTG
57358 GTTGAACCAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.25, T:0.35
Consensus pattern (20 bp):
TGCAATTCAGAGATTGATTG
Left flanking sequence: Indices 56818 -- 57317
GTAATTCCTGCTCCTACTAAAGGAATTCAACAACTAGGGGCATCCCCATTGTTAGCTTCGATTTA
TGCCCTTCGATCCTCATACTGAGCTGCCTAGCTCCAAGACTTGTAGTTGAGCCTATTACTAACCT
TTCTTTCCTAGCCTATGGGGAATACAAGGGGGAATCCTCACAGTCAGATAGCTATGAGTGAAAGA
AGAAAGATAGTTTAGAGTTTACCGTAGCTACTTCTTCCCCTGGCATTGTAGCGAGGCTAACTAAA
CGCTTGAGAAAGACATCCCCTGGCATGAGTTTACCAGTTGGCTTTGTTCCCTGGGCAAGACTTTT
CCAGTTGGGGAAGAGAAAGAAGTTCCCCTCCAATCCAACACTTATTAGTCGAGTAGTAACCCCCT
CTCCTGCACCTGAAACTCGAAGTAAAGCTATTCTCTTGCCCCCCTCTACTGCATTCCCGAAGTTC
ACAGTGCCATTCCTGTCCTTTCTAATAGCCCCCCTAGCCTGCACC
Right flanking sequence: Indices 57358 -- 57857
GTTGAACCAGTAGTCTCATCCCCCTCTGCCTATTCTAAAGGGCGCCGCTCTCCTGAGGGTACTCA
ACAACGAAAGAACCTTACCTGCGCTTTGGTGCTTTGGGCTATGCCATGTCTTCAAAACCTTAGCT
ACTTTACTCGAAGTCGAAACAGAATCGCTACATCAACATCAGCCGCTGCCACTGGCACTTCTCTG
ATCGATCTGGTACACCCGCCAATACTACTTATTAGTAGAGCGGAGGAAAGAGGCTTGTTACACCT
TTGCGCCCCGTGTTCCAACACTTATTCGTATCTAATAGCTTCCTTCGAGCCTTGTTCGATCGAGA
TTCAAGTTCCTCTTTTCGGGCGAGTTAGCGGCTTCGCTTCACCCCTATCTAAGTTTGGTCTATCC
CATTACCTTATAGATTAGTTAGTACCTGAATGACTTTCCCTAAATTCCTAAAAAGGTCACCTGGC
TTCAAAAGCCGGTACCCTGCTTGACTGCATTCCTGGTTCTCTTTC
Found at i:92868 original size:24 final size:24
Alignment explanation
Indices: 92836--92882 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
92826 CCATTTCTTC
*
92836 GGAATTGTCCGCTCATAGCACGAT
1 GGAATTGTCCGATCATAGCACGAT
*
92860 GGAATTGTCCGATTATAGCACGA
1 GGAATTGTCCGATCATAGCACGA
92883 CGCGCTGCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (24 bp):
GGAATTGTCCGATCATAGCACGAT
Left flanking sequence: Indices 92336 -- 92835
CCAGCATGGCGTGACTCACTACACTTATCGGTTTTAGACTAAGGTAAGGTCAAAACACTTTCTTT
TAAGAATGTATGAAGTTTCGCTTAGTTCTATTTTTCCGAGAAATTATTAGGTTGTGGCAAGAGAG
GCTAGATCATCGTTTGACTTCGAATCTTCCCTAATATCTTCAATTGTCATATAGTGAACCATTTC
GGTCGTTAAGGAACAAACACTTCGCCCAATTCTTTTGAATCCCGACCCGTTTTTCCCCACTAACC
AATTATGTTACGACCACTGAACAAACTTGGTTGACAAACATAGTTTATGCGCCGCTAATGTAGCG
GCTTGTCGAGCATTTGACAAACTCACACCATCCATTTCAAATAGAATTTGTCCCGTGGACACACG
AGCAATCCAACCCGTAGGATTTCCTTTTCCTCTTCCCATTCTGACTTCTGTAGGTTTCCCGGTAA
TAGGGAGATCCGCGAAAACTCTTACCCATATCTTACCATTTCTTC
Right flanking sequence: Indices 92883 -- 93382
CGCGCTGCTTCAATGGCTCGATATGAAAGACGACCCGCTCTACAACTTTTAATGCCATATCTTCC
AAAACCAAGTTGTGTACCGTCCGGTTTGCAACCCCTACTACATCTGCCTTTACGATATTTATTAT
ATTTCGTACGTTTCGGATATAGCACGTCCTTTTTTTTTTTACTATATGAAATCCACACTTTGACA
CCTAAGATTCCGTAACGAGTAGATACTTCCGCAGAAGCATAATCTATTTTCTGGTTAAATACATT
ACAAGATGTTTTTCCATACTTTCCGCATTCCGTTCTAGCTATTTCTGCACCTTCTAATCGACCTG
AACAACATATACGGATCCCCTCCACCCCTTTTTTCATTACTAATGGAATATCCTTCACTATTTTA
CTAAAAATGGAACGAAAGGATCTTGTTTTGTTTCTCAGTTGAAAAGAGATGTCTTGAGCAATCAG
AGAAGCACTTTGATAAACAGATTTTATCTTGACCGACTCAATTAA
Found at i:116869 original size:64 final size:64
Alignment explanation
Indices: 116768--116897 Score: 260
Period size: 64 Copynumber: 2.0 Consensus size: 64
116758 GGGGAAGACC
116768 TATGTGGGGCACCTTTTGGGTGTGGGATGCTCGTTTAACCTCTGTATTCATCTCGTTCCTTATT
1 TATGTGGGGCACCTTTTGGGTGTGGGATGCTCGTTTAACCTCTGTATTCATCTCGTTCCTTATT
116832 TATGTGGGGCACCTTTTGGGTGTGGGATGCTCGTTTAACCTCTGTATTCATCTCGTTCCTTATT
1 TATGTGGGGCACCTTTTGGGTGTGGGATGCTCGTTTAACCTCTGTATTCATCTCGTTCCTTATT
116896 TA
1 TA
116898 CCTGGGGGCA
Statistics
Matches: 66, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 66 1.00
ACGTcount: A:0.13, C:0.20, G:0.25, T:0.42
Consensus pattern (64 bp):
TATGTGGGGCACCTTTTGGGTGTGGGATGCTCGTTTAACCTCTGTATTCATCTCGTTCCTTATT
Left flanking sequence: Indices 116268 -- 116767
CTTTCTTTTTTCGGTATGCCGCTCCGCTCGTGCGTGGCACTCCTTGCTGGCGGAGCGAAAACAAA
GCAAGGATAATTTTTTGTGATTTTTTTGGGGCCTTTGATTGCGTATTGAATATAGATCCATGTCT
TTCTTGTTCCACTAGCTAGGAACTCTCACATGTCCGTTTCGTTATCCCAACCTTATTTTTTGATG
TCAAAGACCAGAAGCTACGCGCAAATTCTCATTGGATCTCGGTTGTTCTTAACAGCGATGGCTAT
TCATTTAAGTCTTCGGGTAGCACCACTAGATCTTCAACAAGGTGGAAATTCTCGTATTCCGTATG
TACATGTTCCTGCGGCTCGGATGACTATTCTTGTTTATATCGCTACGGCTATAAACACTTTCGTG
TTCCTATTAACAAAACATCCCCTTTTTCTTCGCTTTTTCGGAACCGGTACAGAAATTGGTGTTTT
TTCTACGTTCTTTACCTTAGTTACTGGGGGGTTTCGGGGAAGACC
Right flanking sequence: Indices 116898 -- 117397
CCTGGGGGCACTGCGTTTTCAAAAGCTTCCTGTCGAACCGGCTCCTATTTCAATCCGTGCTGGAC
CGATCGATATACCAATAATAAAGTCTTCAGTCAACTGGTGGAATACATCGCATCAACCTGGGACC
ATTAGCCGATATGGTACATCAATACATGTTCCTATGCCCATTCCAATCTTGTCTAACTTTGCTAA
CTCCCCCTTCTCAACCCGTATCTTGTTTGTTCTGGAAACACGTCTTCCTATTCCATCTTTTCTCG
AATCTCTTTTAACGGAACAAATAGAAGATCAAGACCAAAACCTAGTTCACTCGCTGAGTTCCATC
CAGGGCGGAATGGTTAAAGCTTCCCAACTCAACATTGGATTGGCGAATTCGTAGGTTCGATTCCT
GCTGGATGCATGCTAATGGGACCCTCTAATAAGTCTATTGGAATTGGCTCTGCATCAACCGAATC
AACAGAGCCGACTGAATCAATGGCTAGACTGGGTACAGCTAAAGT
Found at i:118157 original size:26 final size:27
Alignment explanation
Indices: 118107--118157 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
118097 GCACCCCCAG
118107 AAGCACACACTATAAATAAGAGGTCGT
1 AAGCACACACTATAAATAAGAGGTCGT
* *
118134 AAGCACAGACTA-GAATAAGAGGTC
1 AAGCACACACTATAAATAAGAGGTC
118158 AAAATGGATT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.45, C:0.18, G:0.22, T:0.16
Consensus pattern (27 bp):
AAGCACACACTATAAATAAGAGGTCGT
Left flanking sequence: Indices 117607 -- 118106
GTATTGGTTTGTAGGCAGTTGCTGGCTAAGAAGGAAGGTAAAGAGGACGGCTGTCAATAGCAGGC
AATAGGAAGGAAGCGAGAGCTATATAGGCGAGCTAGGCAGTCCCAGTCCTCTAGTCAGCAAGCTC
TTATAGCTGTCCTGTCCGAAGAAACCCTTCCTTATCCTTATGGAATCGATGCGCTAAGTCTTCCC
TATTCAGCCGCTTGTGAACCTTCAGGTACTGTCTTATTCAATCTAATCTATCTTTCTTCAATTCC
TCTTTTACCCGAAAATGCAATTATAGGCTAGGCATTGGGTTCGGCAAGAATGATATCCCCCAAGA
TAGAAAAACTAGCCGTCACCCCACAAGTAGTAGAGTAGTAGCTGTAAGAATGGATAGACAGAATA
CCTTTTGATTTGATTGAGAATCATATTCATATAAAGGGCATTTCAAGGGGAAGATATTTTACCCA
TTTGCATCAAGCTCAAACTTCCTTCTTGGAGACGTGCACCCCCAG
Right flanking sequence: Indices 118158 -- 118657
AAAATGGATTGGTAGCATACTCGATCAAAGGGGTGTGATTTTATCGCCTACTACGGATCCCATAC
TACCCCCCATAAGAAATTGACAATCCATAAGCCCAATCAATTGCTATGGGAATAGCCTTTGCCTT
TCGTTGACCTGTCCCTCTTTGAACAGCCTCAGTGAATCCAATCCCGTCTTTGATACGAATGAATC
AGTATGAGCTTTATAAGGTTCTTCTTCCGATTGAAATTCAATGGGATCAAGAGAGACCCTGTCTT
CATCCATAGCCATAGGATCCCAAGTACCCGGATCAATCGAGAGTTCTATTCTATCTGATTTATCT
GAACTACTCATTTTAAAATTATATCCACATTCATTGTTCACAAATCTTCCTTTTTTACTTCATAC
TTCTAATCTGACTTCCTAGATTGCTTCTAATTAGAATTGGAAAGGAATGGAGTCGAGGGGAGACC
TTCTAGTAGCCCTTGGTGTGCTCTTTTTTGTCTTAAGCAAATTGG
Found at i:152380 original size:30 final size:30
Alignment explanation
Indices: 152344--152401 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
152334 TCCTGGTTGC
152344 ACAAACAAGTGACTGCAAGGAACGATCTCA
1 ACAAACAAGTGACTGCAAGGAACGATCTCA
** * *
152374 ACAAACAAGTTCCTTCCAGGAACGATCT
1 ACAAACAAGTGACTGCAAGGAACGATCT
152402 TTCCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.26, G:0.17, T:0.17
Consensus pattern (30 bp):
ACAAACAAGTGACTGCAAGGAACGATCTCA
Left flanking sequence: Indices 151844 -- 152343
CCTCCGATACGAACCGGTACAGGACTTCTACCAACCGCTACTAAATTCGACTAGCTTGGAGCTAA
CATAAACTCCCTAATCGAAAGGGGAATTCTCTCCAATTTCACTCAGTCGAAGGAAGAACAAGGAG
GTTTGCTTTCGACCTACTAACATCTTTCCTTTTGGAGCTAACAACAGGGGAGGAGTTCTCAGGTA
CAGTCGGGGTTCGGGGGTGAAACTTCTTCTCTTGATTCCGAAGGTGGGCACTTTCCTTTCTTCGC
TTGTGAAGATCTTGGTGCCAAGCCCAGCTTTCATTGAATATATATTACAGCTCGAGGAGCATCTG
AAAGAGTTGAAGAGGCGCACTCACGGAAGGAAAGGAACTAGCTTGGTAGGGTTGTCATAGCCGGT
CCCTCGAGATAATGTACGAGCTATCTAGTGACGAATCTCTCTTTCTTTAGTTATTGCACGAGCTC
TTTCCGGGTTGCTAACAACAAGTCGGTGAATTTTTTCCTGGTTGC
Right flanking sequence: Indices 152402 -- 152901
TTCCAACCCACATTGAGATAACGAATATCTCTCCTCTCTTCCTGGTGAGCGTAAGCTCGCATAAA
CCAGAGTCTGTAACCTCTTCGGAGTGACAAGCATTCAGAGAAGGGCAGATAAAGATCGGAGAGAG
AATTTCTTTTCTTTCTTTCCTGAACAACAAGTGACTGAGCGATGAAAGAACCTCAGGAACGGAAT
CAACTGACTTCCTTTAAGGAACGCCGCCCTAAAGAAGATGCTCGAAAGCAGAAGAAAGGAAGACC
GGTGCGTCCTTTGATTTTTTTGGTCTCCGGAGAAGAAGAAGATAGGTACTCCCATCAGTACACGA
GCTAAGACCTTTTCTTCGCTCGATTCTGACGAAGTCACTCAATACCCGGGAAAGAATTCCTTGAT
ATGCCAATTTTCCTTCGCTTGAACGCAGATTAAACCCCCCTACTTTTGCTGTGACCTTAACATTC
TCGTTTTCAGGGCCTATAGCCTTCTTTCTAGAGCTATTATTATGA
Found at i:165583 original size:18 final size:18
Alignment explanation
Indices: 165562--165604 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
165552 CAACCTTGTT
165562 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
165580 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
165598 GACTATG
1 GACTATG
165605 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 165062 -- 165561
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACGCCTTTCGTGCTGGTCGGAACTTACCCGACAATAAATTTCGCTAC
CTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTTCAAAGCTTATAACACTTCT
CCTTACGACCCTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAGGATAGGG
GGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCG
CCCCCTAGTATTCTCTACCTACCCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CACCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 165605 -- 166104
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAACTCTAATCAAAAGATAGACTAAAG
GCCCCTTTTGAAGCGCCAGTCGCGTAGGGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGA
CTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCC
AATTCGATCCAACAGACAGGCATGGTTCTGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCAT
CGGACGGCGGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACTCTGCGTAGATTGACTGAACGCA
GAAAACCTTCCACTGGCAGGCGATCGTGTTTTTCACAGGATTTCTCGTTACTCATGTCAGCATTC
TCACTTCTGATATCTCCAGGTGTTGTCACCAATAACCTTCCCCGATTGACAGAACGTCCCGCTAC
TGACACTTGAAAAAGCAGCTTTCAAGGTCTCGTCGCTTCGGTGAA
Found at i:168300 original size:64 final size:64
Alignment explanation
Indices: 168222--168349 Score: 256
Period size: 64 Copynumber: 2.0 Consensus size: 64
168212 GGACCTACTA
168222 ATGAAACTGCTTACCGAGCTTACCGAGTCTAACTCCTTGCTTGGTTTAACTCTTTGCTTGGCAT
1 ATGAAACTGCTTACCGAGCTTACCGAGTCTAACTCCTTGCTTGGTTTAACTCTTTGCTTGGCAT
168286 ATGAAACTGCTTACCGAGCTTACCGAGTCTAACTCCTTGCTTGGTTTAACTCTTTGCTTGGCAT
1 ATGAAACTGCTTACCGAGCTTACCGAGTCTAACTCCTTGCTTGGTTTAACTCTTTGCTTGGCAT
168350 CGGACCGTAC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
64 64 1.00
ACGTcount: A:0.20, C:0.25, G:0.19, T:0.36
Consensus pattern (64 bp):
ATGAAACTGCTTACCGAGCTTACCGAGTCTAACTCCTTGCTTGGTTTAACTCTTTGCTTGGCAT
Left flanking sequence: Indices 167722 -- 168221
TAATTAGACTTCTATAACTATAACTATATAAAGAAATATAACAAGACCCGCTGGACGTTCTTTGC
CCCTCTCTCTACCTGAAAAAAGAAGTCGAGGGACACAAGATCGCCGATCTCTTCATTATATACGA
CATTTCGAGATAGCAAAGAAGACTGTATTTCTGATACGGATTGGGGAACTTCTTTCTTTAATAGC
GGTCATTGCAGGCAGCAGCGGCGAGTGAAAGCATAGGGCTCGTTAGGGCTTCCCTGGCTTAGCTT
CCTTCACCCCTACGCCTAGGAAGTCTTGTATGTACGGGCTTTATTATGGCTAAAACGAGAGAGGT
AGCGAGACTGACCGCAATTGGGAATAAGAAGACTTGCATGTGTTTAGCATATTAGCTTGCGTTCT
CGGCCTGGTATCCTGCACCTCGCGTTCATGATTCCTGTGTAGGGGTGAAATCCAGCATGTCCCCA
GAATTCCTGTTCGACTCCTCTTTCTATCTATGGCCGGACCTACTA
Right flanking sequence: Indices 168350 -- 168849
CGGACCGTACAACCAAGTGGTGCCCCCGGGTGATCCAATCCATCGATTGCGAGCTCTGAACTCAT
CTCCCAGGCCCAGATACAGGAGGAACGAGTGAACGCTTCCAATGCTTCGAACCCTCTTTCCTCTG
ATCCCTCTCTAGCTAGCGAGCTAACAGCTGCTAATGAGAAAAGATCAGAGGCGGTCAATGAACTA
TTGATTTGAAAGCGTAATCCGGGCTAATATGTCAAAGCGGTCATCTGCGGCAAAGGCTTCTGTAA
CTGTGGAAAAGGCTGTGCCTAAATTCTTTTTTGAAATTGTAAATAGAGCGACTTTCCCTCTTCTG
CCTTCTGTCTCCTGCCCTTAAGTATTTGTATACCGGTAATCAGTCCGTAGGCCTTAGTTAGCCAG
CTTATAGGAAGGTAAAGGAAGGTAGCATGGTTATAGCATGGGCAGGCAATAGCCTGTTAGCGAAT
TTCTATCTGTAACGGTAGGAGCATTAGTCAACCATCTGTCGCAGT
Found at i:181586 original size:13 final size:13
Alignment explanation
Indices: 181568--181626 Score: 109
Period size: 13 Copynumber: 4.5 Consensus size: 13
181558 TCCCTAGAAG
181568 AGCATACCATATT
1 AGCATACCATATT
181581 AGCATACCATATT
1 AGCATACCATATT
181594 AGCATACCATATT
1 AGCATACCATATT
*
181607 AGCATACCATTTT
1 AGCATACCATATT
181620 AGCATAC
1 AGCATAC
181627 TATCTTTCTT
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
13 45 1.00
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.31
Consensus pattern (13 bp):
AGCATACCATATT
Left flanking sequence: Indices 181068 -- 181567
CCAGTCCCGACTCTTGCATTAGGTTACGTTGAAGCTTCGATCCAGACCAGCTGATTACACCACCT
GGAGCCAGGGTGCACCTAGAAATCCATGAAGGAGAATAAAAACAAGAGGTAGCAGTAACATACCG
CTATTCAAGCCCATCAGAAGAGGAGGCTGGATATTAAGAAAAGACTACCTTACCGATAGTTCACT
TCGCTCAATATGCAGCGAAATAGAGACCTTCTCTATCTTCATTTAGGAATAATGACTGGTAACTA
AGCACATCTACTACTCTACTACTTAATATAATAAACGAAGGAAAAGAGTACGCTAATTCCTAGCT
CTCAATCAAGGAAAGAAAGACATTCGAAATCGAAGTCTACCTTACCGACCAAGCTAGCCCGGCCT
CCGATACTGCACCGACCGATACAGTTGTACAGTTAGAAACAATCCGCCTGCCCCTTATTAGGGCT
AGTTACATAAGCTCATTTCTTTCCTTAATGCTCTATCCCTAGAAG
Right flanking sequence: Indices 181627 -- 182126
TATCTTTCTTTGGAAAATGGTATGATACTCGATCTAGATACCTAGCTACTAGAAGAGGAATAATA
GCAGAAAGCTTTAAATGCCTAATGGAAGGGAGCTCAGGGCCGGGAAAGCTTCTATCCTTATGAAA
CTAAGAGGCAACGGAGGAAGGGAATGCTGGGCCTAACCCCAGAACAGAAGGAATTTCGATTCCGG
TAAGGGAATACAAGGACGCAAGGACGGGACCGGGCTAGAGGACTCTCTATCGTCCCCATCGTCCT
AACAGCCGATCACGCAATTAGAGCTACGAACAGTTTGATTGTTCTTGGGCAACAGAATCAGTAAC
ACAATCAGGGGTACCGGGCTTGCCTCAATATCGGGATAGAAGGAGGTCTAGGAAACTAGGGACCG
GGCTAAGGTAACGAAGTTAGACCGGACTGACTTCCTCTACAAAAGAAGTTGTTGAATAAGATGTG
GGAGAGCCATGCCCTTAGAACAGGCTCGCAGGAAGGTTTTTATTC
Found at i:182884 original size:12 final size:13
Alignment explanation
Indices: 182867--182895 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
182857 GAGGAAGCTC
182867 CTGAAGCTAGCA-
1 CTGAAGCTAGCAT
182879 CTGAAGCTAGCAT
1 CTGAAGCTAGCAT
182892 CTGA
1 CTGA
182896 CCGAAATCGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.31, C:0.24, G:0.24, T:0.21
Consensus pattern (13 bp):
CTGAAGCTAGCAT
Left flanking sequence: Indices 182367 -- 182866
TTCTGAGTCAATCCATAGGGGAAAACCCTGAAATCCATAGTAGCTGACGATTATGTGCCAAAAGA
CTTTGAGAGAAAGGGGCCGCTCGCCTCCTAGTTGTTCTGGATCGAGAGACTCTTCCTGCGGCCAG
GCATAAATTAGTAAGTACTTTCCTCCAATCTTCTTAAACCCGAAAGGCTGGGCTGACTTCATCGC
CCGGTCAGTTCTCGAACCTTGATTCATCTAGTTTTCTCAGTCACAGGTTGGAAATCGGCTTTAAG
CGAAAATCCCGGCCTTTCTAAATGATTCTACTTTTGTTTGATCTTAATCGATGAAAGGGTAATCC
CGAATCTTTGGTTTGGCAGAGTGACACCTTTATCCCATCTACCTTTCCTCTACTCACTGGAGGAA
TTCCCAATCATAGATAGAGGAAAGGTTGAATGCTGCCCCCTTCCTCTGACCCCGAAGCATTCTTT
CAACCTTCGGCCAGGCGCCTAACTAACCTAACTAAGAGGAAGCTC
Right flanking sequence: Indices 182896 -- 183395
CCGAAATCGGATTGACTTTTCGTGCCAGATTTTTTGAATGGCCTAGGAGTGAAGTTCAAGGGCTT
GGCTTCAAGGCTCAGATTCTGTATCGGCAGTTTGTTCATCAAGCCTATTCTCGAGCCTATATCTA
CTCTCTTTTCTTTTAGAGGCGTACCTCTCCACGAGATCGAACACTTTACCAAGGATTGAATCCAA
AAGCAAGAACTCGGTTGTGGGTTTTTGTTCATCTTCAAATCTGTCTCCTTGTCATGAACAAACAA
CTTTCTCTACATTAGAGTGCAAGGTGCGCAGAAGATTCATTTAGGTAAGCACACTAGAAGGAAAG
GACTTGTCTGGACTTCCTATGTCTTGCTGCCTCCGCTTGACTCAGGAGGAGAGGAGAGCATTCTT
CTACAAAAGAAGAAAAAGATTATTGCGAATAATGAGACGCTACCCTTGCCTGGTAGTTGAGTAAG
GTTTCTCAGTTCTAGTGAGTTCTTTTCTTATGACTTGACAGCGGA
Found at i:196914 original size:12 final size:12
Alignment explanation
Indices: 196900--196941 Score: 57
Period size: 12 Copynumber: 3.5 Consensus size: 12
196890 GTCGGCCTGG
*
196900 GCTTCGGCAGCG
1 GCTTCGGCAGCC
196912 GCTTCGGCAGCC
1 GCTTCGGCAGCC
* *
196924 GCTGCGGCTGCC
1 GCTTCGGCAGCC
196936 GCTTCG
1 GCTTCG
196942 CCTTCTGCTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.05, C:0.38, G:0.38, T:0.19
Consensus pattern (12 bp):
GCTTCGGCAGCC
Left flanking sequence: Indices 196400 -- 196899
TCGCTCCGTTTCGTTCTAGTTCTCGCAGATAATGTCTTAGGCTGCCTTCGAGTATATCCTTCTGA
AATTGGTTGACTTTAAAATCAAGGTGTTCAACCTTGCTCTGTAGAAAGTCGTAAGCTTCTTCACG
AATATTTTGGAAAGCAGTCTTTTCAAAAATGCGGTCGATCTGCGGGTCGGCCAAGAGTAAATTAA
AAAGACGCTCTTGTAGCGTCGCTTTCATTTCCATTATCTGGACATCGAACATCTCATTTTGTACG
GTAGAAAGATAAGTAGAAAAAGAATAAGCGGATTGGCGGATATTATCTTTTACCAATTCCTCATA
CTCGCCAGGATTGAGCTGGATCGGGAGACCATAGGCGCATTCGGCTTCAAGAAGCCGAATTCGGG
CAAAGAGTTCGATTTCCCGATTAGTAATTTCCATTAAGGCTTGCAGTTGCAATGGAGATAGTGTA
TTTAGAAAGGCTCGCGCTTCCGCTTGCGCGCGTGCGTCGGCCTGG
Right flanking sequence: Indices 196942 -- 197441
CCTTCTGCTTGAACAGCTACTCGTAAATCGGCCGAAAGGGCATCGGCACATTCGGCTGTCGAAGA
AACCGGCGTTCCACTACCTGGAAGTGAAAGCCAGTCATTCGAGTTAACAGCCAGCTGTAGACTTT
CAAGGATTTCGAATCCGAACCCCCAAGTGCCCAAAAGCTTACTACACTGGTAATTAAAGAGAAAG
GAAATAGTGATGCGCACTAATGGGCGCATCAAAAGCAAGATAGGAAAAGCTACCCAAAAAGCAAG
ATCCTCGTTTAAATCAGACCTCTATTTCGGTACAACGAGAAGGAGTTTACTATGGTCAGTGCAGT
GAGATTTGTGGAACTAATCATGCCTTTACGCCAATCGTCGTCGAAGCTGTTCCTAGGAAAGATTA
TGGTTCTCGGGTATCTAATCAATTAATCCCCCAAACCAACTAAACCGGGGAAGCGGAAATGAAAG
AAAGTCAATCTATTCCTGCTCTCTATCCTTTGAATTTCTCCAGTA
Found at i:204660 original size:16 final size:17
Alignment explanation
Indices: 204628--204673 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
204618 CGGCCCTTGG
204628 GGTTAGTTCATTCTCTT
1 GGTTAGTTCATTCTCTT
*
204645 GGTTAGTTGA-TCTCTT
1 GGTTAGTTCATTCTCTT
* *
204661 GCTTAGTGCATTC
1 GGTTAGTTCATTC
204674 CATTTATTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
16 13 0.54
17 11 0.46
ACGTcount: A:0.13, C:0.17, G:0.22, T:0.48
Consensus pattern (17 bp):
GGTTAGTTCATTCTCTT
Left flanking sequence: Indices 204128 -- 204627
AAGCTGGCGTCTAATGTCTCCGTTTCCGTTACAGACAGAGACAGAAAGAGAACGCCATAGAGAAG
AGACCTATTAGGATAGTGTTCCGTTTCCCCCTATTAGCTTCAGTTCTTTGATTTGCCAGCCTAGC
CTTGAAGCGCATCCCCTATGAAAGATCGTAGTTTTGCACTAAAAAGCAGGACTTTAACCACTATG
AGATGGCTTGAAGAACGACCAATAACTAAGCGCACTAGAGTCCTTCCACCTCTGACTTTGGACGG
AATCCTGGTTCCTGGGATCTCTCTTTTTCTCTTCTACGCCGTACTTAGGAAAGGAAAGCTCGGTT
GTCAAGGAGAATGAATTCGTAGCTTGGTTCTCAAAGAAGGGTAGCGGAGCTCGAAAGCCGACGCC
TTCACTCCTTTTGTCAAGTCTTTCAGTACTGTTCCCCTCCTGAATGAACTCTTTAACTAGAGGAA
AGACAGAAAGGGAGAAACGGATAAACATACGAGATCGGCCCTTGG
Right flanking sequence: Indices 204674 -- 205173
CATTTATTTACACTGCCCCTCTTTCTTTTGCCAGGATGTCTTTCATCAGCCAGCACCTTCAAGAG
CCAGTCAGTCCTTGAACTCTCTGTCTCGCGCCTTTCTTCATTCAGCTTCTTCCTCTTCAGTTATC
TATCTGCTTCGCCCCTATCTTAAAGTTTTTTCCAAATCATCCGAACCTCACTTCTTTGAGACAAA
TCAGACTTGCTTGACGAGAGAAAGATTGAAGAAGGAATGAAAAACGGACTTCTCTCATGGTATAC
TTCCCGCTGAGACTGCCTTCTTAGCCTTCCTTTAGTCAGCTCTCTCAGGACGGGGTAAACTACCT
AGATCGGAATCATTGCGGCTAATGCCCAGCTGAGGCGCGATACCCGCTGTACCTTCTTTACCTGG
TAGAGAGAAGGTGTTCCGGGGATGAGGAATGAGCTTCCGGCAATATACTTAGACTCCCCCTATAA
CAAGAGAAGAAAGCGCCCAGGTCAGCTTCGGGCTAGCCAGTATGG
Found at i:209843 original size:22 final size:23
Alignment explanation
Indices: 209812--209859 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 23
209802 TACTAGCACA
*
209812 AAGCCTGTCTCTACTC-ACTAGC
1 AAGCCAGTCTCTACTCTACTAGC
*
209834 AAGCCAGTCTCTAGTCTACTAGC
1 AAGCCAGTCTCTACTCTACTAGC
209857 AAG
1 AAG
209860 GGTAGAGTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 14 0.61
23 9 0.39
ACGTcount: A:0.27, C:0.31, G:0.17, T:0.25
Consensus pattern (23 bp):
AAGCCAGTCTCTACTCTACTAGC
Left flanking sequence: Indices 209312 -- 209811
GGAGATGCCTTTGTATGGTATAGCAAGCTGTTTAGCTACTTGTATCGATTTGCCACAGTGTGGTT
AGATACAATGCACTGGCAGCTTGGCAGGATGGGAATTAAGGTTGCTATAGACTATTGTAGGATCA
AACTCTAGCAAAAGAAAGAAGGGTTTGAAGTGCAAGAAGGCCTAGCTGTAAGTACTTCCCTGGTA
TCCAACAAAAAAGTGAACTTAGGTTTCATTCCTTTTGCTCTAAGTATACACCTTGAAAGCCAGTG
ATTACGGACAAAGAAGTAGATGCTCAAGCCCGCAATAGAAAGAGTTTGGGGAGCCCCTTAAAGAA
AATAATGTGTGTTTTATTTACGGAATGAAACTTAAGTGGAACCCTCCTTCTTTAGTGCCAACCCG
GGGATCAAATGGAGATGCCCCTGTCAAGTGACTCCAATCGTATCTGAGTTTTAATGACAGAAAGG
TAATCCTTTATTAATCTAATCGCAAGTAGCTTATCTACTAGCACA
Right flanking sequence: Indices 209860 -- 210359
GGTAGAGTTGGATCTGCCGCAACGAGCCTACTCTGCTTGAAAGGGAGAGAGGGGGATTTAGGGGA
ACCAAAAAATAGAGCCAGTGGAGTTCTCTCCTAAGCCAGTAGTTCCTATCCTAGTAGGAGGGTAG
CTTCTTTCTTCCAATATAGCTTCTTCCTCTATATACGGGCTAATCACTAATCAATAGAGACAACT
GAGGTAACCACCTAACTAATAGAATGGCATTTCCTTCTGTTAGAACTTTAAGCAGAATACCTTAC
CTGCACTTGTATCTCTTTAAGGAAGGATGCTTTTACCTGTCCTAGTTGCTAGTAGCATAGGATCT
AGCGACATCAGCATAAGATGTTGCGACCGAGGAGAAATTGTCCAATTATCCTCCGCTGTTAGTTC
TTGACAGAGGCTTCAAGGAAGGACTCCTGAATGGGATAAGGGCCGACCCTCTCCTTTAGAGTTGC
TGTTGTTTATGTCCTTTGTATCTCAGTTGCTAGTGGGGAAGCTGT
Found at i:218093 original size:45 final size:45
Alignment explanation
Indices: 218029--218128 Score: 200
Period size: 45 Copynumber: 2.2 Consensus size: 45
218019 GGAACGAGAA
218029 CCAGAAAGCTGGTGTTCGTCAAGCCTGTTTGACGAGTAAGAAAAG
1 CCAGAAAGCTGGTGTTCGTCAAGCCTGTTTGACGAGTAAGAAAAG
218074 CCAGAAAGCTGGTGTTCGTCAAGCCTGTTTGACGAGTAAGAAAAG
1 CCAGAAAGCTGGTGTTCGTCAAGCCTGTTTGACGAGTAAGAAAAG
218119 CCAGAAAGCT
1 CCAGAAAGCT
218129 ACTCAGACGG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 55 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.21
Consensus pattern (45 bp):
CCAGAAAGCTGGTGTTCGTCAAGCCTGTTTGACGAGTAAGAAAAG
Left flanking sequence: Indices 217529 -- 218028
AGTACCAGAGTCGTTCTAACTTGATTCGCTCACAACGTGGCCGTAGAATCTATATTGAGTGATGA
GGTGAGGACCGTTGCCTGTTGAGGACTTCCGACTTGGATTACCAGTTTCTCATTCCCCTGCGAAC
AACTAGGGACAGATAGAGGTGGGATACTAGAGATCGTACTATTCGAAGTAAAAGAAATTCATGCC
CGGCCCTTTAAAGTGGTTCTTTCCTTTCTGGTTGCTTTCTTCTTTCAAGTCCGGTCTGTAACTTG
AGCCTTGGCCTCTTCGGCCTCCCTTTCCCAAGGAGATTCCCTTCCCAGAACGGAACCTTATGACT
CATCAACTACAGGACAAGCACTTATAGGAAAAGCACTTCCATTCCTGGAACCTTTGGACTCAAGT
ACAGGAATATAACCCTCGTCCTCAAGGACTCCCAAAAGCACTACTCAGTCACTCAGTACAATTCC
AAAGTCGGAACTATTCGAACTCTTGTTCTTGTCCCGGAACGAGAA
Right flanking sequence: Indices 218129 -- 218628
ACTCAGACGGTGAAGCTGCAGTTACACCTAGACTTGAAAAGGACCTGCTGGGTATTCGTCAAGCC
TTCCTGACGAGGAAAGAAGCCCAGAAGCAAGACCTTAAGGAAGATATTCCTGACAAGATCATTCT
CTTTGCGTATTCCCTCGCCCTTTCAAAGGGTTCCTTTCAAACTTCTATTCCCGTTCGTTGGGATT
AGAAAGAACGAATGCCCCAGTTTATGTTATGGGCCGAGGGTTCTTTCGTATTCCCCTCAAAGGAC
CAGACCAGACTGAAGCTGAAGAAGGAGATTCATCTGATTCGTATCAACGAACGGAAGCAAGACCT
TAAGGAAGATATTCCCTATCTCAAATCGAGCAAGACAGGAAGGACTTTCAGACTTCTTCGTATCG
ACGAATCATAAAAGCAAGGAAGCTACTCAGACGCCGAAGCAGCAACCCGCTCAAACAGCTTGCTC
AAACTAGAAGCATCAGCTGCATCTTGAAATAGAAGGTCAGATTGA
Found at i:233388 original size:51 final size:51
Alignment explanation
Indices: 233309--233455 Score: 267
Period size: 51 Copynumber: 2.9 Consensus size: 51
233299 TGGCAGGAGT
*
233309 GAAGTATATCTGATCATCGGTAATTTCTGTAAGGGGAAGAATCGCTGGTGG
1 GAAGTATATCTTATCATCGGTAATTTCTGTAAGGGGAAGAATCGCTGGTGG
*
233360 GATGTATATCTTATCATCGGTAATTTCTGTAAGGGGAAGAATCGCTGGTGG
1 GAAGTATATCTTATCATCGGTAATTTCTGTAAGGGGAAGAATCGCTGGTGG
*
233411 GAAGTATATCTTATCATCGGTTATTTCTGTAAGGGGAAGAATCGC
1 GAAGTATATCTTATCATCGGTAATTTCTGTAAGGGGAAGAATCGC
233456 ATGAAAAAAC
Statistics
Matches: 92, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 92 1.00
ACGTcount: A:0.27, C:0.12, G:0.29, T:0.32
Consensus pattern (51 bp):
GAAGTATATCTTATCATCGGTAATTTCTGTAAGGGGAAGAATCGCTGGTGG
Left flanking sequence: Indices 232809 -- 233308
AGCAAAGAGATGGCAACTAGCTTACCGAAGTGGCTTAACGAAGTGTGGATGCTCCGCTTGCTACT
GGAGCAGCTTCTCCAGTCGACTATTTACGTCCCGTCGTGCGTCAAACTTTTCACACTTCCCCTTG
AGTGGGATTGTAAAATCAAGTCTTTTCCTACTCACCGATATGTAGATGTGGAAGAAAATGGATAA
AGTTAGGATCCCGCCCTTGGGACTGGACCTCAATCGGACCATTCAAACCTTCTACTCATAGAAAG
ATTCAAATCAAAAAAAGTACCCAACTGAAAAGGTGGCCCTTTAGAGTGAAATAGGTCTCGTTTCT
CTAGTTAGTATGCTAGAGTTGTAGATTAATCTGCTCAGATATACAGGGTTGTAGGCACTTTAGGA
AATCCCAGGAATAGAGATTGAGTTACAATAGTAAATCTCTATTCAATGCCGTTCTCCAAGGCTAT
ATGTTTTCGATTGCATGGCGCACGATAACCTCTATTGGCAGGAGT
Right flanking sequence: Indices 233456 -- 233955
ATGAAAAAACAGATTTATCACAGGGTAGAGACACCTTCATAAAACAGAAGGGAAAATCCTACGTT
TCACTTTAAAAATCTAAGAATAAATCACCATGTGGATCAAAAAATGAAATCTGAGTTATGAAGTA
GAGAAAAATGAGATTGACAGGTTTTGGAATGAGTTTTTCAATGCTATACAAAATACAATGGTACA
AGAAAATGGTAAAACAAAAGGAGAACAGTATAAAAATAAAGTATTCGACATTTTACAGAAAGAAA
AAGATAGATTTCCATTAAGTGAAGGGGAATTACTTAAGATGCAAATGAGGATTGAGGATCTGTCA
ATGAACTTTGACGAGGAATCTATTTTTAAGACAACACCCAACATAATTAAAATATTAATCAAAGA
TAATAAAATAAATGCAAAGGATTATCTCAAGGATAAGGTAGACAATAATGATGATATTGAATAGC
TTTCTGAGTTCGGTCAATATACGATTGAGGCATTAATAGTTCATG
Found at i:243927 original size:30 final size:30
Alignment explanation
Indices: 243892--243958 Score: 134
Period size: 30 Copynumber: 2.2 Consensus size: 30
243882 AGATCCGGTT
243892 GCTCCGGAGCCGGAGGTTGGTTGAGATCCA
1 GCTCCGGAGCCGGAGGTTGGTTGAGATCCA
243922 GCTCCGGAGCCGGAGGTTGGTTGAGATCCA
1 GCTCCGGAGCCGGAGGTTGGTTGAGATCCA
243952 GCTCCGG
1 GCTCCGG
243959 CCGTCTCGAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 37 1.00
ACGTcount: A:0.15, C:0.25, G:0.40, T:0.19
Consensus pattern (30 bp):
GCTCCGGAGCCGGAGGTTGGTTGAGATCCA
Left flanking sequence: Indices 243392 -- 243891
CTATGTTTCCCCTCTCCATTCCCAAGTAAAGGGTGAGTCCCATGCGTCAGTTTGTGGATCGCGGT
CTCACGCACTAATCCCTACAGGTGCCCGTAGTACGCCGGCCGCCCTACCTAAACCAATCATCATA
TCGGTCCCTAAGCCCCATTGCTGGAAAGGCTCGGCTTCAAAACCGTACGTGGAGCTTCCGCCTCA
TACGGCTCCTCTAGGGATGGAGGTAGGCCCAGCCCAGGCTTGTGCGGTTAAGGTTGTTGTACACG
AGCGAAGACGTGTCGAAGTGAACATTTACTATTGGCGCCCCCGTCGATTCCAATATTTCCGGAAA
GCGTTCTCCATATTCATATGGTGTAAACGCTGCCTCTCGCGACTCTCTCTTTCTTTCCGAAGAGA
AATCTCCAGAAGGTTCTCCCAAAAACGAAGATGACCTTGAAAAACGCGAATACGCTTCACGTTCT
TCTTTAGTTCTTCTTTGATTTCCATTTTTCTTTCTAGATCCGGTT
Right flanking sequence: Indices 243959 -- 244458
CCGTCTCGAAGGGCCGGCATCGCTTCCGACGCCTCCAACGGGAAGAGGGTCCATTGAAGACAGAA
GCCAATCGCTCCATTCGAGTAAAGCGAGGAGAGGGGCTACGGATACCCAAGTCAAGCCCCAGTTC
AAAAGCAGGCGACTTAGAAGGATAAGGAATAAAGAAGCTATGAGATTCTTTATTCTCAACAGGAA
TGCATCAAGAAAACTGCCCTTCCATATAGATCGTCGTGGTATGAACTCAGAATTTATTCGCTGCA
ATCGCTTCGATCCACCCCCTCGGTGAAAAACCGTAATACGCCCTGAGGAATTCCTACCAGCAGAC
TTCCCTGTACTCAAAGTGAATTGTCTAAGTGCTCTCCCCTCTTGGCTTTGTCTCATTGTCTATCT
CGTAATCAATCATTCGATTCCGTCCTACTCCTACTCCTCTTTCATCGTCGTTGGTCCTTTTGACA
TAACATTCTCGGCCGCCTCCGGTCCGGTACGAAAGAAAGCGGTAG
Found at i:259489 original size:39 final size:39
Alignment explanation
Indices: 259434--259512 Score: 149
Period size: 39 Copynumber: 2.0 Consensus size: 39
259424 CCCATCCTTC
*
259434 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
259473 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
259512 A
1 A
259513 TAGAAAATCT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.32, C:0.19, G:0.28, T:0.22
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 258934 -- 259433
CAAGTCTTTCGAACAAGGGGATTAGCGGGTTTACCCGACGAAGAACTGGAGAATTATCTTTGGGA
TATGTGTTTTCATACTATATATTCACAAATACAAAGAGATATTCACCAGTCAGTAATGAGTTTGT
ATGGTGATCACTTTCATCTTCCGCCTGGACTCACCTTTTCCCAACTTTCCATGGCCATTCATAAC
AATTCCCGGTCCTTGGTTCTTCCGATCTATCGAAATCTTTCGGAATTAGGTCCCCAAAGTCCCGA
AATTCAACAAATTGTTGAAATTATTCAAACATTTATATAAATCCAATTTGATGTTTATGGTTTAA
TGGTTGTACGTGCATATGGATTGAGTGGTATTATTGGACGGAACCTAAAGTGAGGAGCAGCTGCC
CGAAAGCAAGTGAGGCGGGCCCATTCGAAGTAACGTAAGAGGATTCGATGTTGCACCATCTTCAA
CTCTTCTTGGGATCCGGAGTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 259513 -- 260012
TAGAAAATCTAAAATGTACATAGCTGTTCCAGCGGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCGGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTTGGATTGTTACAACCTATAGCAGATGGTTTGAAATTGATTCTAAA
AGAACCTATTTCACCAAGTAGTGCTAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATGGGT
TTGTGCCGCAGGTGTTGAACGATCTACTCTACACAGGTGTGGGCT
Found at i:268505 original size:62 final size:62
Alignment explanation
Indices: 268428--268556 Score: 258
Period size: 62 Copynumber: 2.1 Consensus size: 62
268418 TCTCGCTACC
268428 AGTTGATCCCCATACATATTCCTTTCGTTCCATCAACTAATCTTATTCTTGAATCTCGTGCA
1 AGTTGATCCCCATACATATTCCTTTCGTTCCATCAACTAATCTTATTCTTGAATCTCGTGCA
268490 AGTTGATCCCCATACATATTCCTTTCGTTCCATCAACTAATCTTATTCTTGAATCTCGTGCA
1 AGTTGATCCCCATACATATTCCTTTCGTTCCATCAACTAATCTTATTCTTGAATCTCGTGCA
268552 AGTTG
1 AGTTG
268557 CCTAATAAGA
Statistics
Matches: 67, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 67 1.00
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (62 bp):
AGTTGATCCCCATACATATTCCTTTCGTTCCATCAACTAATCTTATTCTTGAATCTCGTGCA
Left flanking sequence: Indices 267928 -- 268427
TAGGAACTGGCCAATCCATGAGTATACCATGAAGTTACAAAGGTGGTACCTGTGAACCAACCCCC
TAAAGCGAAATAGGCACAAGGAAAGAGCAATAAACCAGACCAGCCTACAAAAACGAAGCGGTCCC
TCCGTAACCAGTCATCCATAATATCAAATAAATCATTTTCATCTTTGGTAAATTTACCAAGGGCT
ATAGTCATAGTAATCCTCCTATTCAACTCCTTCGACCATTAACACCTCATAGCACGGGCGTTCGA
GGCTTCTATCATTTATGTATGATTTTCTTTCTCGTACACTGAAAATTCCCTTCTTTCTAATGGGT
TTCTAATATAAAAATAATTTATTGGTACATAACCTGACCGACCATGAACCCAATTCCGTTATTCT
TTCCTAGTCTTAAGCGGAACCTTGAATTGTCTTGTCTTATGACTCATCAATCAGATAGATGAATT
TTTTGAAAGAACTGTTAAAAAAAAGTTATTACTTTTCTCGCTACC
Right flanking sequence: Indices 268557 -- 269056
CCTAATAAGAAATCGAAGTGAAAGGGGGATCAAAAGGTAAGGATGGGACCTTCAATGCCAAGAAC
AGGACAAAAAACGTGAGCGCCTAGCATGGCAACCAAATCTGCATTTAGAAAGATTGGCAAAAAAT
GGTCCTTCAAACACTAAGTTGGTCCTTCTCGTCAGTCTTTCATATGATCATGAATCTCTTGACTA
TAAAGAAGAAGATCGTCGAAAAAGACAAGAAGAAAGGGCCTGAAGATGTCGTTCATTAACCCTTG
AAAGGTGCATTAGTCAGAAGGGCATTACTAAGAACTCATCATGCCCATCATGTGTGTGAAATGCG
GTCTTATGCACCTCATCTGGATGAACCCGAATCTGATGGTAACCTGACCTGAGATCGAGTTTCGA
AAAGATGGTAGCACCACTCAGCTCGTCAAGTAGCTCATCTACTACAGGAATTGGAAACTTCTCTT
TCACTCTCTCTTGATTAAGAGCGCAGTAGTCGACGCACAGGCGCC
Found at i:275255 original size:18 final size:19
Alignment explanation
Indices: 275225--275260 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
275215 TTCTTAAAGC
275225 AAGCTACGTAAGGGAGTGA
1 AAGCTACGTAAGGGAGTGA
*
275244 AAGCTA-GTAAGGTAGTG
1 AAGCTACGTAAGGGAGTG
275261 TTGGCAGTAA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.36, C:0.08, G:0.36, T:0.19
Consensus pattern (19 bp):
AAGCTACGTAAGGGAGTGA
Left flanking sequence: Indices 274725 -- 275224
GAAAAGAGCTGCAAGAAGCCGGTCGGAGAGAAGCTTTCGAAAGGTAGGATCGAAGAAGAAAGAAA
TCGGTACAGAGATGGTCCCGGTTGGGGCAACTCCCAATGTTAACAACAACCCGCTCCCTAATCAT
GCCAACATCAATATGATTGGGGAAGGGGATTTTCAGCCCCAGCTACTCATTGGTTCGGAAGGGAC
AGTAGTACAGCTCGAATCAGAGCTCACGGACATTCCCCATGTCTGTCTGATAGGCGGGAAATCAG
AAAGTGAAGAGGAGGATGATGATGACTCCTACGAGGAGAATATAGCTGACCTCTTCGGAGGAGCT
AGACTTGGCCCTTGACGGAACGGAACCCATTAGGAAGTAAGCCCCACAACCCGAAGATCTATTTA
TAGTTGATATTGGGGGATCTTCCGGACTCTTCTCTTACATCCTATGGTTATCGTCCTATCGTCCT
GTAGGTAAAGAGAGAAGAGCTAGGAAAGGGCCCTCTTCTTAAAGC
Right flanking sequence: Indices 275261 -- 275760
TTGGCAGTAAGCTACCGATGCGTCATTGCTGCTGTGAGTGATCGAATCAACATCCCTCTACGGCA
TTCCTCATTCCAGCTCTTATCCTGCTTTCCATCCCGGCCCCTACCCCTAGGCAAGCGAATGAGCA
ACCAAACGAAGGAACTGCCCGAACTAGCGATCTCTTGAGTCTTTGTCGCCACCAACCTCACTCGA
ACTAACCTGCATCTTTGTTTGTCTCCATCGAGTCCATTAGATCCTGCCAATAACCAATTCCAATG
TTCCATTCCTTTACTCCAAGCCTAGCCAACCAGCTAACTCGAACCAAGAGTGTATAGGGAAGGTT
GTCTTCAAAGCACAACTATCTAGCAGGTGATCTCCTCAATCCGTTGATTCCGAACCCAGGGCGAG
CCAAGCTCCACCCTCTCAATCCTTGTCTTCTACTCCTGGTGATGTAGTTGATAGCAGCATCCGAA
CAACCCGTGGTTAATCCCATTTGTAGGCAGGCCCTCGGAACAGAA
Found at i:298614 original size:26 final size:26
Alignment explanation
Indices: 298549--298614 Score: 89
Period size: 26 Copynumber: 2.5 Consensus size: 26
298539 TCTCCTCTAA
*
298549 AACCAGTAGCAAGCTAGTGACTTTAG
1 AACCAGTAGCAAGCTAGTGACTATAG
* *
298575 AACCAGTCA-AAAGCTAGTTACTATAG
1 AACCAGT-AGCAAGCTAGTGACTATAG
298601 AACCAGTAGCAAGC
1 AACCAGTAGCAAGC
298615 CAGTAAGCAA
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
25 1 0.03
26 32 0.94
27 1 0.03
ACGTcount: A:0.39, C:0.21, G:0.20, T:0.20
Consensus pattern (26 bp):
AACCAGTAGCAAGCTAGTGACTATAG
Left flanking sequence: Indices 298049 -- 298548
ATAGCGGACCAAGGTTGAAGTGACTACTGTTTTTTCTGGTTGGATGCTTTCTCACATCTTTGTCC
AGTCACCTTGGCAGACGAATGATCCAGATAAGGTATCAATTTGAGCACATCAGCCTTTACTTTAT
CCTAGACCAACCTTCTGGTCTGAATCATAGAATTCTGATGACCAGGCCACTTGTCGAACTCATGG
TTAGGGTTCCCATCCCATCGACCTAACTCAGTGAGTCATGGTACCTAACCTACCTAACTCATCTA
TTCTGGGAGCATGGTACCCATCTCTCACCTACTTATCTACCCTAGCTCCAGTTCAGGTCATATCT
TAATTACTGGTTGAGAGGCCTCCACTCACCTATGATTGAAGGTGCTCGACCAACCTACCTAAGCA
GCGATTCAAGCCTCCCTACGCTCCACCTCCTAGTGATGCCCCCCGGCCTACCTTTAGCAGTGATT
CTCAGTCTTTCCTAGGACAGTAGCTCTACGGGCCTTCTCCTCTAA
Right flanking sequence: Indices 298615 -- 299114
CAGTAAGCAAGTAGAAAGCCGGTAAATAAATAATGACTTGTAATAAGAATACTTCGTTGAGAGAT
GATTCTCCATTAATCTTTTCTTTTGGTTAGGTGATTCCACCAGCTTTTTCCTTTCCAGATCGAGA
TCCATATTTTGGTTTTAGAAAGCGAGATCCTGTTCGAGATCGATAGCTTGCCTATATTAAATTAA
TAAGGAAAGACCAGCAAGCAGCTAAGATAGCAACACCAGCATCAGCAGTAGTCTATCCAGCAGCA
TCCGTCGGTTAAGCAGTAGATTAAGCAAGTGATTTAGTTGTTTATGGGTCCCTGGTGATGCACCT
GTAGTTATTGAAGGAGTTGACTGAGCAAAGGCATCAGAGTAAGCGTCAGTTTCTGTCATTTCCAC
TTGGACCTTCGCTAGCTAAGCTACACACCAAGGGATATAGGAACGGAGCTTATTCCAGATCGTGA
AGAGCCAGACGTTCTTCAAGGGGAAGGACACCATGAGGAGACCTC
Found at i:305970 original size:21 final size:21
Alignment explanation
Indices: 305933--305972 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
305923 CTAGCACTAG
305933 ACTTCTTCCCTCCCCTTTTCT
1 ACTTCTTCCCTCCCCTTTTCT
*
305954 ACTT-TTCCTCTCTCCTTTT
1 ACTTCTTCC-CTCCCCTTTT
305973 GTTTGTGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.05, C:0.42, G:0.00, T:0.53
Consensus pattern (21 bp):
ACTTCTTCCCTCCCCTTTTCT
Left flanking sequence: Indices 305433 -- 305932
ATTAGTTGACAACAGTCAAAAGAAGGGTGCCTAATTCCAATACAATAGGGGTCTATCAGTGCAAG
TCAGCTGAACACCGTGATTGATGAGTGGATAGGTGGGTTAGGTGCACCTCTCGCCCAGTGGGAAG
TAATGAGGCTAGTCTCCCCCCCCCCTGAATGAAGAAGTAGTGGGGCCCCCTTCCCGCGTATGCGC
CTTTATTTAGATTCTTTCTATTTTTGAATTACCAATGGAGAATCTTTATAAAAAAATCTCTCTGG
CAAAACGCAATTCGTCGATTTCAATCTAAGGTGCACCTTGCCTTTTTTCAGGTAGCTTTCTTATG
CCTATTCAGCTAGTGGGGCATTGGTCATAGCCGAAATTCGTCGAAGGGAAAAAAAAAAAAAAAAA
GAGAAAGAAGAAAGGGAAGTTTTGTCTTTCTTTCAATCCAAATAAGAGAACAAAGAAACCACTCA
AAAATGAAAGTTAGATAAAGAAGTTTCAGTAAGAACTAGCACTAG
Right flanking sequence: Indices 305973 -- 306472
GTTTGTGCTTCCACCCGGGCTTTTCATTCCGTTTTATAGAGACCCGGGGAAATTTTGATTAAAAA
AATGTAGAAAGGTGAGGCACTTTCCCCGGCATACGGAAAAAAATCCAGGATGACGGCTTTAAAAG
GACGAGTAAGGGACGGGGAGAGGGAGGCTCTCGAAACCAAACGAGAAACGAAAGAAGATGGAAAT
TAGCACCATTACTATGAGTGCTGTTGTCTCGAAGAGACAACAAAGGGGCAGCCCTCTCTCTCTAT
CTCGGTCTCGGTTTATCATCATATATCGATCTGGAGAAAGTTTTGATTGGTTGTAGTGCGGATTA
AGGAGCAGCTCCTCCATGCTGTGGCTGTGGAGGTGGGGGCTGGCGCCTCCCTTGGTTTTGTTTGG
GAAGGACCCCTATTTTCTTTTTACGGGCCCGCCGAATCCTGAAAAATAGGTTCTTGGGGAAGCGT
GGTAGGGGAGGGTAGGGGCTGTCGCCGCCTGATAGAGGCAGAAGC
Found at i:353347 original size:75 final size:75
Alignment explanation
Indices: 353257--353405 Score: 298
Period size: 75 Copynumber: 2.0 Consensus size: 75
353247 AAAGCAAGCT
353257 TAGGAATGAATCTAATGGAAATTTAGGTCTCTGCCCGCTTGGAAGATTCTTCTTTCCTCTTCGGT
1 TAGGAATGAATCTAATGGAAATTTAGGTCTCTGCCCGCTTGGAAGATTCTTCTTTCCTCTTCGGT
353322 GAAAGAGGGG
66 GAAAGAGGGG
353332 TAGGAATGAATCTAATGGAAATTTAGGTCTCTGCCCGCTTGGAAGATTCTTCTTTCCTCTTCGGT
1 TAGGAATGAATCTAATGGAAATTTAGGTCTCTGCCCGCTTGGAAGATTCTTCTTTCCTCTTCGGT
353397 GAAAGAGGG
66 GAAAGAGGG
353406 CAAAGGTGTG
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.32
Consensus pattern (75 bp):
TAGGAATGAATCTAATGGAAATTTAGGTCTCTGCCCGCTTGGAAGATTCTTCTTTCCTCTTCGGT
GAAAGAGGGG
Left flanking sequence: Indices 352757 -- 353256
CAGCCCCCTTCAACATCTCTCATAATGTGTTCTACGCTGTTGAAAGCTAGATCCACATGAGGTGT
GTAATGCATAGCTAAAAAAACGCCAGTCGCTATCTGAATGACTAAACAAAGACCTGCTAACGAAC
CGAACCCCCACCAATAACTAAGATTGCTCGGGGTTGGATAATCTATCAAATGCTGATTAAGTATG
GAGGCTATAGGTTGTTTAAGAAGAGAGAATCGTTGGTTTCTTATAGTCATTTCTCTTTTCTTTTC
TATCGTGACAACTCTTGTTCCCACACCTTTTTAGCGTTCTGGGGCCCTACTAAGAATATTGTTCC
TTTCTTCCACCTCCGAAGGATGGAGGGGGTATACAGCGAAAGAAGCGCCGAAGAGGTCATCTTGG
GTTACTGAAGAGTCGTCCGACTGCGCGGTGACCGAATCAGAGAGGTTTTTACCGCTTTCTCTTCT
CTCCAGCACTCTCGGGCTGATCATCTTGCTGCAACAAAGCAAGCT
Right flanking sequence: Indices 353406 -- 353905
CAAAGGTGTGTGGGAGAAAGAATTCTAAAAGGAGAGAAGATTTCGTCCACCAAGCGGGACACAGT
GCTACCCCTAAGCAATTGGAGGTTCTCGCTCTGGGGTCCATATCATCTGAAAACTTTTCCTGTTC
CATTAGCATAGCTAAATTTTAATAGTATGACTCAGCTTCAGGAAAAGTAAGCCCCCTTGCCTTGA
TTGAATTTGGCTTCGCTGCGCCCTGAATCAATCAAAAAGCTTATAGATTTCTTTCATCCCATTTC
ATTTGGGCGAGAGGGAGGCTGTGAGTCACCTGGGCTACGGATTTGTCGGTTGGTTGATTCTCGAA
ATCACCTCTTGAGAAAAAAAAAAAAGAAGGCCCTCGGGTCCCGACCCACAAATAACTAGGAAGTG
AGGCGAGGGTCTTTCATTAAAGGGGGGAGGGGTGGGGCTTTGTTTTTTGGGGGCCGCCTTGCGCA
GGAAAGGAGAGAATTTTAGAAAGTCACTCTCTCCAACCTTTTCTA
Found at i:354871 original size:9 final size:9
Alignment explanation
Indices: 354857--354881 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
354847 AGCTGCCCCT
354857 ATTCCATTC
1 ATTCCATTC
354866 ATTCCATTC
1 ATTCCATTC
354875 ATTCCAT
1 ATTCCAT
354882 CAACAGCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.24, C:0.32, G:0.00, T:0.44
Consensus pattern (9 bp):
ATTCCATTC
Left flanking sequence: Indices 354357 -- 354856
TATAGTAAGGATAAGGCAATACAGTCAGAAAGGAAAGTATTCCAATAGCAGCTGATGAAACTATA
GCACGAACAGCTACCTCCTCTTCCCCATTCAATAGGGAACACTCCCTTTAAAGACGTTAGCAATC
AAATCACAGCTGAGTCAACCAAAGCAAGAACAGCGCCTTCGCCTGCTTTGATTAGGACTTTCTCC
GGCTACGGCTACAGAGTCATCTAAATGCTACTTTGCGTAAGACTTTTCATTCGATTTTCACTACT
TCGAATTTCGCTACTCCGGACTCTTTAAAGGCCTTGAGCCCGCCCCAAGAATCCGGAAGTCACGG
AACTCCCTTTACAGAAGACTTCGAGTCAGTAGCTACCTTTGGAAAAAGAGTAAGAACTGATAGTC
ATCGCCTTTCCCTTTCGACTGGCATTATCACACCGCCATCAAAAAATGAAATAGCAGCTCCTAGC
CCGATTCCAAGACCTGGACCTGGTTCAGGTTTGAAAGCTGCCCCT
Right flanking sequence: Indices 354882 -- 355381
CAACAGCTCAATCGATGGGATTTGCTTTCAAACCTAAAGGAAGTTACCCGGAGCCGGTAGAAATG
ACTGACTTAAGATAGAGAGAGATCACCCCTAACAGAGTCCATTCTCCGAATAGTAAGACGGTCAA
GCCAAAGATCTGATTCACTAGCAAAGGAAAGCTGCCTTGATCAACTATAGGAAAGTACCTGTTTT
ACACAGTGACAAGGACTTCGCCCGGTCTCCTCTTTCTTTTTCACAGCTGCCCATGAGTTCAACAA
AAGCAGAAGCGATCCGATAGGACTGTTGACCACGTCGAACTAAGCCTGCCTTCTTTTTATAACGT
TCGTGCCCCATACCCTTTATCAAATCGGAGAAAGGCGGGAGCTTTATTCCATTCCGACTCCCCTT
ATGCCTTTTGCTGCTCCACAATGCTCTCTCCAAAACAAAAGTGAGTGAGTGAAAGAAGCCCAGCC
CACTTTACCTCCCCTTATCACGAAGAAACGACGAAACTTTAGTGG
Found at i:374722 original size:9 final size:9
Alignment explanation
Indices: 374708--374739 Score: 55
Period size: 9 Copynumber: 3.6 Consensus size: 9
374698 AATAAAAGAA
374708 TTATCCCCG
1 TTATCCCCG
*
374717 TTATCCACG
1 TTATCCCCG
374726 TTATCCCCG
1 TTATCCCCG
374735 TTATC
1 TTATC
374740 GTTGAAGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.16, C:0.38, G:0.09, T:0.38
Consensus pattern (9 bp):
TTATCCCCG
Left flanking sequence: Indices 374208 -- 374707
AATCAGGGTTAAAGAAAGGAGAAACGTCTGCTATTTGTGGGAAAATTCTCATAAACTCCTCCGGC
GTAGTTGTAATGGGCCCGAATGAGTACCACACAATACAACCTATCCCCAATATAACAAGCACTAA
GAAGCGTCCATACTTATTGTTGTATTTAGTACAAACATAAACAAGAATTTTTTGAACATCCCATA
GAACAACCTCCTTCAAGCTATGTATGGATATCATATTCACTATATCCCATTTATTCCAGGTATCG
GTATACTTGGTTAAACCAAGATCCCTACTAATTAATCGGAGTATGTCAATGTCAGACGATTTGTA
TAGTGTAAACTGATGGTTGGTCAAGGGGGTGAGTTGAGCTGAATTACCTAGAAAGCTTTTATAAT
TGAAATCGATTTTGATAGCAGGTGGTGTGGTTATAGCTGGTGTTTTTAGCCATTCCAATAACTCC
GGAGGTAGTTCACAGGGTCGGTACCTTACCCTCTCAATAAAAGAA
Right flanking sequence: Indices 374740 -- 375239
GTTGAAGTACCCCCAAAGTGATAAAAGAATCCATATTGTTGAATCATTTGCATACTCATTTGTTA
CCACAGTCTCTGGCTGAACAGTGTCAGGCTGAACATCAGCTGACTCAGACCCTTGCTCTCTCAGC
AATTTATCCTCCAAAGAAAGCTTATCGAAGTCCTTACATAATGAAAACATTTGTTGATTCTCAAA
CTCATATAGGAATGTATACCACCAATCTTTCTCAATGTCAAGATACCTCATATCACTATTTAGCC
TTTGCTCTTCCAAAACCTCCTCATTGTATCCGTCCCGTAGCTCTTCCGACGTCCTTCCATTAGCA
AGTTCTTCACTATCAGCTTTCTTATCATAAGTTCTAACAAACATAGTAGTATATTCAGGAATACA
TGTTAGTGGACAATTCATCTTCTCTGCCATGATAGAATACCTCTGTACGGTCAAATAGTGAAATA
TAGTAGCCTTCCCATGACCGGCGCCAACATTATTAGTTGAATAGG
Found at i:436873 original size:30 final size:30
Alignment explanation
Indices: 436816--436873 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
436806 TAACAGATGC
* *
436816 TCAGCCTATAGATAGTTATCGGTATGCTTA
1 TCAGCCTATAGATAGTTATAGGGATGCTTA
436846 TCAGCCTATAGATAGTTA-AGAGGATGCT
1 TCAGCCTATAGATAGTTATAG-GGATGCT
436874 GCGTCTCTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 1 0.04
30 24 0.96
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (30 bp):
TCAGCCTATAGATAGTTATAGGGATGCTTA
Left flanking sequence: Indices 436316 -- 436815
CAGATGCATATATAGATCTAGCTTCCCACCATGCTTGGTGAGACGGGATTGGTTAGAACTACTTG
CTTGGACAGATTCTAACTAGACTATTAGATGGGACAACATGGTTCGGGTAGACGAGCTTCGCACA
GGTTCGGTCACTTGGATGGTAACTATTAGGACAGATGGGCAACAAGACTAGACACTACTTGCTTG
GGCAGATTATACCAATTGCTATGGTTCGGTAAAAACTTATCAGCCAAACAACTAGCACGAGACCA
GGTCAAGTCAAGCTAGTTCAGTTTCAATTCAGTATCAATCACTGTCTCTAGCTGTCCCTTTTCCT
AGTGGCTTATAAGCTGAACCTTGATCTTCTATTGAGAAGTAACGGCTTCCCAGCCGAAGGCTTAG
GAGGTTTATCAGCGCAATACAATAGCGGCACGAGGTCGGGGTCCAAGCTTATAAGCCCAAGCTAG
CGAGGATCCAGCCGAACAACAAGCGTAGAGAGGTATAACAGATGC
Right flanking sequence: Indices 436874 -- 437373
GCGTCTCTCTGTCCGTAGCCTCCGCCTATGCCTTTAGGTCTTCACCTAGAAGATCAACCAACCAA
TGATGTGAGCATCAGGTGGTGGCTTGACTAGAGTCCATGTCTTATTCTTCTCAATGGCCTTCATC
TCTTCATCCATGGCTTTCCGCCTCAGAATACCTTTCATAGGGCTTGGTGAAAGCTTCAGACACAG
TTTCAGGTTCCGGTGTATGAATAACAACCTTAGTCATAAGAGCAAAGTTTACCTCTTTTCTCTGA
AATAGTGGGTTCTCATGTATCTCTTTGAACTTTCCACGAGTAAGAGGACCTTTCTATTCTCTTTC
TACTATGGTTCCTCCAGACTGAGAAAGACTTTCCGCCTATCTTGGTCTCTTATCTCTTAGGTGGT
AGCAATGTTGAATTATCTCCCCACGAATCTGATGAACTGGCAGGAGTAGGCTCGAGAGACCTTGT
GGTTCTGGAGCGGATGTAGACGGGAATGATGAGCTCTTCAAATGC
Done.