123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_022714
Parameters: 2 7 7 80 10 50 500
Length:  443419

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9915--9948	16	2.1	16	94	0	59	26	11	14	47	1.79
21379--21436	29	2.0	29	93	6	100	17	22	15	44	1.86
22270--22337	35	2.1	33	89	10	104	2	47	14	35	1.60
30171--30205	17	2.1	17	88	0	52	45	14	25	14	1.82
45526--45558	16	2.1	16	100	0	66	18	30	12	39	1.87
48267--48304	19	2.0	19	100	0	76	36	15	21	26	1.93
49724--49785	31	2.0	31	100	0	124	32	29	22	16	1.95
52083--52128	24	1.9	24	86	0	65	15	32	23	28	1.95
53116--53157	21	2.0	22	86	13	61	42	19	14	23	1.87
79243--79304	21	3.0	21	78	0	61	12	29	24	33	1.92
101069--101108	18	2.3	18	91	4	64	15	47	27	10	1.77
138214--138277	18	3.6	18	91	0	101	35	14	12	37	1.83
138410--138553	30	4.8	30	92	0	207	27	19	15	38	1.91
151486--151520	17	2.1	17	100	0	70	28	22	11	37	1.89
192481--192505	12	2.1	12	100	0	50	32	16	8	44	1.76
240253--240295	21	2.0	21	95	0	77	37	4	23	34	1.76
275261--275285	13	1.9	13	100	0	50	24	24	0	52	1.48
279022--279161	70	2.0	70	100	0	280	18	21	22	37	1.94
279499--279569	22	3.2	22	78	7	81	22	16	23	36	1.94
303527--303552	6	4.3	6	100	0	52	15	19	0	65	1.27
313723--313759	18	2.1	18	89	0	56	24	13	24	37	1.91
314605--314638	17	2.0	17	100	0	68	41	23	23	11	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340049--340074	12	2.2	12	100	0	52	57	15	0	26	1.38
351725--351752	11	2.5	11	100	0	56	71	0	21	7	1.09
360912--360952	19	2.2	19	90	0	64	12	43	14	29	1.82
373539--373563	13	1.9	13	100	0	50	24	24	0	52	1.48
377300--377439	70	2.0	70	100	0	280	18	21	22	37	1.94
377777--377847	22	3.2	22	78	7	81	22	16	23	36	1.94
388311--388390	39	2.1	39	90	0	124	21	20	21	37	1.94
393092--393160	35	2.0	35	100	0	138	26	26	11	36	1.90
393097--393171	35	2.1	35	87	4	107	29	24	14	32	1.95
427953--427982	15	2.0	15	100	0	60	40	13	26	20	1.89
434782--434905	57	2.2	57	100	0	248	14	34	14	36	1.87

Tables:   1

The End!