Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_036024
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 452526
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:8613 original size:17 final size:17
Alignment explanation
Indices: 8591--8625 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
8581 CCCCTACCTA
8591 TACCTATACCTGATGAT
1 TACCTATACCTGATGAT
8608 TACCTATACCTGATGAT
1 TACCTATACCTGATGAT
8625 T
1 T
8626 TTCAATCCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.29, C:0.23, G:0.11, T:0.37
Consensus pattern (17 bp):
TACCTATACCTGATGAT
Left flanking sequence: Indices 8091 -- 8590
ACTCAATAGAGGTGCAAGGCTTACAGAAGTGCCCAAACAACCACAATATGAACCACTTCCAATTG
AAAAACAAATTGTTGTGATTTATGCTGCTGTCAACGGCTTCTGTGATCGAATGCCACTAGACAGA
ATTTCTCAATATGAAAAAGCCATTCTAAGTACTATTAATCCAGAATTACAAAAATCCTTCTTAGA
AAAAGGTGGCTTAACTAACGAAAGAAAGATGGAACCAGATGCTTCTTTAAAAGAAAGCACTTTGC
CTTACCTGTGAATTAATCAAAAAGGTTGCCCCTTACTCGCAGATGTAGGAAGAAGGCTTTTCTCG
CCAACTGAACCCCAATAGGCTATTTTGGACTTTTTGCACATAATTATTAAAGATAGATTTTCGTG
CCATGCGTAAACCAAGCTGCTGAGAGTCTACCCCAGCCACAAGGGGGAGCTGCTCCAGTAGTTCA
GGATACCCCACCCAGCCCCACAAGGGTTGACGGACCCCCTACCTA
Right flanking sequence: Indices 8626 -- 9125
TTCAATCCACAGCTCATTTTCTTGAATATGTGACAAGCCTTGCAAATTGTGATAATATGTATCAA
ATTAGTGGTCCGCATAACCCAATATTTGAAAATTATGGAGGTGCAGGCCCAAGTACTTCGAATCA
TCAACAAGAAATCCAAGAAAGAACAGCGAAGGAAAAACGTGACAAGAAAAGTGTTTTCTCGACTC
GAGATGTTAGAAGGTGCTAAATCAATAGGTGCCGGAGCTGCTACAATTGCTTTAGCCGGAGCTGC
TGTCGGTATTGGAAACGTCCTCAGTTCTTTGATTCATTCCGTGGCGCGAAATCCATCATTGGCTA
AACAATCATTTGGTTATGCCATTTTGGGCTTTGCTCTCACCGAAGCTATTGCATTGTTTGCCCCA
ATGATGGCCTTTCTGATCTCATTCGTTTTCCGATCGCATAAAAAGTCATGAGATCAAAAAAGAAA
TGTGAGAATGTAGTTACAGATGTAAAAAAAGTAAATATCTCGTTC
Found at i:9948 original size:6 final size:6
Alignment explanation
Indices: 9939--9964 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
9929 CCCTTCTTGC
9939 TCTTAT TCTTAT TCTTAT TCTTAT TC
1 TCTTAT TCTTAT TCTTAT TCTTAT TC
9965 GGTGGAATAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.15, C:0.19, G:0.00, T:0.65
Consensus pattern (6 bp):
TCTTAT
Left flanking sequence: Indices 9439 -- 9938
GGTTCAGAGAAGTTTGTAAGCTCTTTCTCTTTTTTCGTTTTTCGCCACCTCCTGTGTCTTTCCGT
TTAAGGTCTTTAATTCGGCATTAGCTTCGTTAGAGAAAGCCATGCGTGAACTACAAAGCATGGGA
TCCTGAACACCACGAAAGAAAGCGTACTACTTTTCAATAAGGTCCGACTTCAGAGAGGAGAGACA
TGAACTTGTTTTAGGCGTAGAAAAGGCATACGGTATGAAAGATTGATTGAAAAGAGGTAGGGACT
GGTCTCGCTGCTAAGGGAGAAGGAGACCTCTGTCGGAGCAAGCTAAAGAGCCCACTTTATATCGT
CGATTTCAGGTAAGGCACTCGATCAAGCCTATACATCCGGGAATTTCGCTCCAAACCAAAGACGA
CTTGCTTTGCTGCATTTCTTGGGCCGGGGCTTTACTTGATTTTGGCGAAAGAAAGGCCATATGAT
CTACTTTCTGGTGCCGGTCCCTTCACAAAGATAGCCCCTTCTTGC
Right flanking sequence: Indices 9965 -- 10464
GGTGGAATACAAGAGTTCTGAAGCTCCTTTCTTTCAAGTGAAAGTTGCCTATCTTTCTTGGTTCG
GAATCCAATCCAGTTGAAAACAAACAATTGCCCGATGGCAAAGTCAGATGAAAGGCTAGGAGTGT
AAACCACGTACGAGCGTGGCGCAGAAAGCGAAATGTTTTGCAGCGAGTCAAGCGTAATACGATCA
AAAGGAAATGGGGTCGATGCTAAAACTCAAACAGTTCCCCAGAGGGGGCCCCGGGTTGAAAGAGC
GAGCTACATTCTTTCATAGAAGACAGAAAATAAGAGGACTGATGCTTTCTTACTTCATCTTAATA
TAGGGATTATAGCATTGGAATTATGGAATTTGAATGGATTGAGTACATCAAGATGAAGAAATTAA
CGTAATAAGCGATATTCTCAAAAGATTCGGTCATGCCAGAAACCTCAGTGTGCATGGCACTAAAA
AAGGGTACAAAGAACCTGAGATGCAAGTAATGGCTGAATAGCCGG
Found at i:20159 original size:18 final size:18
Alignment explanation
Indices: 20124--20160 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
20114 CGCTCAGGCG
* *
20124 TTGGCGTTATATCCAAGT
1 TTGGCGTTATAGCAAAGT
20142 TTGGCGTTATAGCAAAGT
1 TTGGCGTTATAGCAAAGT
20160 T
1 T
20161 CTGAGAGATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (18 bp):
TTGGCGTTATAGCAAAGT
Left flanking sequence: Indices 19624 -- 20123
AGTAAAAGTGACCGAGATGCGAGGGAAAAACTTTTGTTTCACATTTCCGGAAAGACCACCTATTT
GTTCGTTTACCAGGTTCAGCACGAAATCATAAATAAGCTCGACCAAGGATTGCCATGCATTTGGC
ACTGACTTTCCACCTCCCTTTTTCGTAACAACAAAAAAAAGAAAAACGACCAAAACGACAGTGAG
CAGCATATACAAGACTTCATTTGTAAATGATAAATAAAAGTTGCCCACATGAAGATCAATTATTG
GGATAATGGCAAATTGATCCAATGGGGTTTCCGGGTAGGCACCAGGCAGATTCTGGATAAAATTA
TCCATACCACCACCCGCCCGAATATCCTCTAATATGCCCTGCCAAGTTTCGCCATTTCGGTGGCG
GGCTCCCAATACTGTTCTAGCTAAATTGACTGCTCCCTGTTCGGACTCATTTTGGCCCAAATACT
CTTCTATTTGTAAAACTATTGTGACGCCGGCAATTCGCTCAGGCG
Right flanking sequence: Indices 20161 -- 20660
CTGAGAGATGTTGGTTGGGAAAAAATCATGTAGATCGGGAAGACGGGAACACTTACTACGAATTG
GTTGATTCGTTGTAATAGCAGCAAATAGCATATTTCTATCCTTCATATCCGTAGAAAGAAATCTC
ATCTCCAGGTAACTCCATCTTTTTCAGCTCTGCTCGCTCACTTTTGAAAGGAAGACTTAGTTTTA
GATCGGCGTTGGTTTTTCCAACGAAACGAATAAGTTTTGGATTGAGATTTCACATAAGCATTGCA
CAATGATCCGCATTAGGCGGGGAGCAGCAATGATACCGCCGGCCAGGAATAAGTACTTATCCCTC
TTATACTTAAGAAAAGAGAATAGAAGTGGTTCCTTTTCTTTCTATACGAAATTCGACGATTTCGT
TTGTGTTCATGTTGGCATAGGAGAACTACTAACTTCCGCCATCTGCATTAGTTACGTTAGCGTAG
GTAGGCGGTTCTCATGCCAAAGGGGAAGATCTCGCTCAGCCAAGT
Found at i:35112 original size:18 final size:18
Alignment explanation
Indices: 35089--35123 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
35079 TTCTAACTTG
35089 CTTGACACACTGATGGAC
1 CTTGACACACTGATGGAC
35107 CTTGACACACTGATGGA
1 CTTGACACACTGATGGA
35124 ACAATGCGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.29, C:0.26, G:0.23, T:0.23
Consensus pattern (18 bp):
CTTGACACACTGATGGAC
Left flanking sequence: Indices 34589 -- 35088
AGCAGTACGTACTGGCAGCCTCCCGATGTGGGGTTCCAGGGCAGAGGTCAGAGAATCTATATGGT
CGGTGTCTACGCATGCTTGAATTCCATATCCATAGCTGTCAAAATGACGTTAGTAGGATCATCGG
TCGGGAGTCAAGTCAAGGGAGTGAAGTTGAGGGAAAAGCTCTTTCTCTCCAAGTTTGAGCACTGG
CCTAAAACTGGATCAAAGATTGGAATCCGGAATCCAAGTCTCTTCTTTCTTATACGAGTTTATTT
CTTAGTAGAGTAATGTTTCCCTTTCCTTGACTGTCTTCCCGGAGAGATTCCTTGATTTCGGTATT
TCACTACTCTAGTTGGAGTAACGTCCCTTGCTATCTTCATTCTGACCTTGCCCTAGCGGCGCACA
GTGACAAATCGAGTTCAGGTTCTGATCTGGCTCGTACACTAAACCTTACCAGTAGCTCTTGCTCT
TGCAGCAACTGTTGCACTACAAGCACAAGCTATTCTTCTAACTTG
Right flanking sequence: Indices 35124 -- 35623
ACAATGCGGCCGACTCACTCACCTGCCGCCCTTTAGTAGGAATCTGAAGAGGAAGGAGCCTTAGC
TGCTTCTATTCTATGCAATTCTCTTCTCATCCCTGCGCCTGCTCGGCACATAAACTAACAATCCT
GCTACTTCTCCTTACAACAACTGCTGAAGCTGAGAGGCTAGGGGACTCGGGTCAGGGCGGGATGA
GTGCTGCTATATGGTTTGAACCCTCTATCTGTAGATCATTCCTTTTACTGATTTCTAGCTTTTCG
GAGGCACAAGTAGTTGATCACTTAGACGTACGAGATTCTGAAAGGATTGTTCTCTCTAGGCACAT
CTTAGGAAGGATTCCGTGTCCCTCCAACTCCATCCATTGGGCGGCGTCTTTTCATCCGGAGAAGC
TGTCGAAGCGATAGCCATGTCTGATCCCCGTATCTGTGAAAGAGCAAGGTCTTCCTAGTGGAGTC
TAGAAAAAGAGCCGGGTATTCTGAGTGGAGTCTGGAATGAGACCT
Found at i:73040 original size:19 final size:19
Alignment explanation
Indices: 73016--73056 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 19
73006 ACTGCTCGCG
* *
73016 AGAAGCATGGGGGGAGTCT
1 AGAAGCACGGCGGGAGTCT
73035 AGAAGCACGGCGGGAGTCT
1 AGAAGCACGGCGGGAGTCT
73054 AGA
1 AGA
73057 TAGAAGGGTT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.29, C:0.15, G:0.44, T:0.12
Consensus pattern (19 bp):
AGAAGCACGGCGGGAGTCT
Left flanking sequence: Indices 72516 -- 73015
AGCAGATCCCGGGATAAGAAAGATACAGAAATATGGAACTTCACTGCCTTACTTGGAAAGCTAAG
CAGGTTATTGACCCACTAATCTTACCTTCCCTCAAACCTTCCACTGAAAAGAGCAGATCCCAGAA
AAAAGGATAGCGAATGATCGATTCACCATTGATAGCATTAACCCTAAAAGGAGGGATGAAGCACA
TGCCACCACATCCACTAAAGAGAAGGAAAAGAGAAAAGAGAGGCGCCAGGTCCAAGAAGGTATGG
AAAAGGCATTAGAGGTTTGATTCGCTCAAGGTTTTGAACAACAAGTCAGGTAAACCACCAGTTAA
TACCAACCACGGTTGACTTGATTTTCGATAGATTGAAATGCTTTCAAATTCAGCATGGTTGTGAG
ATTAATCGTACCCACCCGGCTAGGTCACCTGCGAGACTCGCTAATATACTACTTTCTTTCAGGCA
ATGAAAAAAATATGGTTTCTAGTACCTCACTAACCACTGCTCGCG
Right flanking sequence: Indices 73057 -- 73556
TAGAAGGGTTTTCAATAATGGTGGTTCGTTGCCTCACCGTAATAAGTGCCTTAGTACTTTCGAGT
CTAAGGGGCGTGAGTTAGAGGCACAATATTCTTTCTATACAGTCAACTAGCAGCCCTAGCTAATT
GAGCATCAATCACTATTTCTCTAAGTCATAACTAGTACCTCCCTTGTGGCGAAACCAATGGTTCA
CTTGATTTCTAAAGAACAGCTTTCGTCGTACGGCAGGGCCCAGGATATATATGCCCTTCTCTTCA
TTGCTTTCCTGAAATGCGTAAGTAATCACCTTCGAAATGGTACCAAAAGGCCGGCTCAAATCGTC
TATTACAGCCTGGTGGAACCTATTCTTCGACTACTTCTTCCTTCGACTAGCGTGCTTAGAGAAAA
TACAACGGTACCTATATAGCTCGCTGTTGAAATTGTAGTTTAGGTGGACTGTATGTCTTTACATC
TTCTCTGGCCGATCGGGGTCTCCAAAGTAAGCAAAAAAAGGAGTA
Found at i:81053 original size:21 final size:21
Alignment explanation
Indices: 81027--81069 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
81017 CAAGGCCTAA
**
81027 TCGACCTTCTAGAGCAGATTC
1 TCGACCTTAAAGAGCAGATTC
81048 TCGACCTTAAAGAGCAGATTC
1 TCGACCTTAAAGAGCAGATTC
81069 T
1 T
81070 ATACTAGACT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (21 bp):
TCGACCTTAAAGAGCAGATTC
Left flanking sequence: Indices 80527 -- 81026
TCAACTATAGGAAACTGGCTTGGTAAAGGTCAACGGTCCTGTTCAAGCATTGGCGCATAACGGGA
GGCTAGCTCAGTAGATTAGTTCTTTAGTTTAGGAGTGAATGCTTTGCTTTCTTTTCTTTGATCTA
CTCGTTCATGAATTCCATCAAAATAGTAAATAGAAAGAATTTCAAATCACAAATCATACATAATA
AGCAATTCTTGTGAACGAAAGAGATATCCGATTTGAGAGTCAGGACCTTAAAGCTGATTATGGTG
AATCCGGTGATAAGACTGGCAAAGCTTCTTTGCTCTAGGTAGAGGCGGCTGTGCTTTTCATTTTC
TTTGATCTTTCCGCGAGGGCCTCTGCTTTCCTCGAACGATGACTGAGGAAACACATCCAACCTCG
AATGCTGAGACAAGACCGGGCACACTTCTATAATATAATTAAAGTAATATAAGAAAAGGGCCGAG
AACTTTGATACCAGTGGAGTGCGATGACATGATGACAAGGCCTAA
Right flanking sequence: Indices 81070 -- 81569
ATACTAGACTTGTGGCTTCAGGAGATGAAAAGCTTGATGAACCCCGACCCACTAGACCAAGTGAG
TGATGTTGCATTTCGAGCACAGGCACCTTTGACCTAGCTTTCGACAGAGAGAGACAAATGGGAAT
GCCAGGCACAACTCTTTGCTTTGAAGCATGAGAGAACGAGAACATTTCCACTGCTTTAGTTGCTA
GAACCCCCGCCTGGAAGACAGCACTCATCCCTTCCTTAATTAAGTAGTACTAATCCCATTCCTTT
AGAAACCTGTCCTTTCCAGTGGAATAGCTTGCAGAGTAGAGTGATTTCCTTGCTTCATAGGTTTC
AGGTTCAGAAGACTCTCTTCCCCGTATACTGTATTTACTAGTCAGGCCCGGTGGAGCAATCTCGA
ATTCTCGTATATCAATGCTACATGAATGATTCACATAAGGGAATTCCAAGTGGGTCGAATAGGAC
TAGGGAGCTCGCTTCCATCTACTAAAAGTTCTCTACGGGTGGGGA
Found at i:83487 original size:16 final size:16
Alignment explanation
Indices: 83466--83497 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
83456 ATATCTACAT
83466 GAAAGGAAAATGAATG
1 GAAAGGAAAATGAATG
83482 GAAAGGAAAATGAATG
1 GAAAGGAAAATGAATG
83498 TGATGTACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.31, T:0.12
Consensus pattern (16 bp):
GAAAGGAAAATGAATG
Left flanking sequence: Indices 82966 -- 83465
AGTTCAAGTGCTCTAGTCAAGTAGTAAGCTCCAGTGGGAAGCGCTAGTCCAGATAGAAAGAATAG
ACAGGAGGATTGCCAGGTTGGTCCGCACAGGTGCATATCTGTAGGTTTCAGCACGGGATTCAAGA
TCGTTGGTACCCGATGTTCAGTTCATGGGAATGGGAATGTAGGAAACTCTCTCTTCCGTCCGGAA
CATATAGATAGATTGATTGCTGTAGCAGCAAGTCAACTAGATCCAGTGAGGAATGAGAACCTTTC
CGGGGGCAAGGGGGGGCGAAGCTACTAGCTACTATTACTATTGGCTATGGATGTCCTAACACGAA
CGGAGTCTATACGAGCAGAGGAAAGCGAAGCGTATTGGTTGGTTCGGATTTCAGAGTGCACTGGT
TCTATTCTAACTAGACTCGCATCATAAGTTTGCCTGCTTTAAAATCCCGCGAAAGTACTACTGGC
AGCTCCTATATGAGGTTGATGCCACGAAGATTATCATATCTACAT
Right flanking sequence: Indices 83498 -- 83997
TGATGTACACTAGAAAAGATACCAAGCAAGAGGATGTGCGCAACGTCGCGCTCGAAAGTCTTGTC
TATGAAACCAAACCCTAGTTCCGTGAGGAGGAAGACTCTCTTCGGTCGAGGGATGGATGGACTAG
TGCCGTAAGGATGAGTGATGCTAGAGGGAAGTAGATCAATAGTAAACAGGAGATTGCTTTGCGTA
TCACGGATCGAGCACACAATAGAATGCTCGAACTACACTCTCCTAGCATCAGGCCTATGGTCCAT
CCAAGGACAGAGCTGTAATCAGCGCCTTTCTCAGATCTTCAGATAGACAGAATTCGTCGTACACG
CTTAGCCATCTCGCCCGAGGGACCCTTCCCCATAGTCCCGGCATTTCTAGTTCCGGCTAACCAAG
ACCCTGAAGGCAGATGTTGGAACCGCTTCTCGAACAGGAATCACAGACCCAACTCATGCTCTTGT
TCTTTTTTACTCCGTTTTTTCGCAAGATGCAAGGACAAGAAACGC
Found at i:86035 original size:18 final size:18
Alignment explanation
Indices: 86000--86036 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
85990 CGCTCAGGCG
* *
86000 TTGGCGTTATATCCAAGT
1 TTGGCGTTATAGCAAAGT
86018 TTGGCGTTATAGCAAAGT
1 TTGGCGTTATAGCAAAGT
86036 T
1 T
86037 CTGAGAGATG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.24, C:0.14, G:0.24, T:0.38
Consensus pattern (18 bp):
TTGGCGTTATAGCAAAGT
Left flanking sequence: Indices 85500 -- 85999
AGTAAAAGTGACCGAGATGCGAGGGAAAAACTTTTGTTTCACATTTCCGGAAAGACCACCTATTT
GTTCGTTTACCAGGTTCAGCACGAAATCATAAATAAGCTCGACCAAGGATTGCCATGCATTTGGC
ACTGACTTTCCACCTCCCTTTTTCGTAACAACAAAAAAAAGAAAAACGACCAAAACGACAGTGAG
CAGCATATACAAGACTTCATTTGTAAATGATAAATAAAAGTTGCCCACATGAAGATCAATTATTG
GGATAATGGCAAATTGATCCAATGGGGTTTCCGGGTAGGCACCAGGCAGATTCTGGATAAAATTA
TCCATACCACCACCCGCCCGAATATCCTCTAATATGCCCTGCCAAGTTTCGCCATTTCGGTGGCG
GGCTCCCAATACTGTTCTAGCTAAATTGACTGCTCCCTGTTCGGACTCATTTTGGCCCAAATACT
CTTCTATTTGTAAAACTATTGTGACGCCGGCAATTCGCTCAGGCG
Right flanking sequence: Indices 86037 -- 86536
CTGAGAGATGTTGGTTGGGAAAAAATCATGTAGATCGGGAAGACGGGAACACTTACTACGAATTG
GTTGATTCGTTGTAATAGCAGCAAATAGCATATTTCTATCCTTCATATCCGTAGAAAGAAATCTC
ATCTCCAGGTAACTCCATCTTTTTCAGCTCTGCTCGCTCACTTTTGAAAGGAGACTGATCTTGAC
GTCGGCGTTGGTTTTTCCAACGAAACATTCTTTCACGAACTTCCATGACAAAATGCTAGTTGCCT
TGTAACGCATACACTGGAGCGTTTGTCCCATCGACGAAGGCCACTATACGCGTTTTCTGAAGAGC
AACATTCTCTTATAACCAAACATCGCAAAGACAGAAAGGAGTATCCTGAACGTAAGGCCAATGGC
TAGCAGACTTCGCGGAACACTCACGATATTCAGCTAAAGCTGGATGCATATTATATCTTGCCTTG
GTAGAGCGAAACTTTGAACCCAACACAAGCAACTCTCCCGGTTTA
Found at i:103468 original size:17 final size:17
Alignment explanation
Indices: 103434--103468 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
103424 GAATGAATCG
*
103434 GGCATCAAGTAAACTAA
1 GGCATCAAGGAAACTAA
*
103451 GGCATCAAGGAAAGTAA
1 GGCATCAAGGAAACTAA
103468 G
1 G
103469 ACTTGAGGAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.14, G:0.26, T:0.14
Consensus pattern (17 bp):
GGCATCAAGGAAACTAA
Left flanking sequence: Indices 102934 -- 103433
TATACAAGATGGGACACCAATGTCCTTCTAGCTTCAACACGCTATGATTCATATCATCTTGACCG
TCCTCAAATTCTGGACATCTTAAGGCACGTAAATCTAAGTGGATTTATTTCCGTGATCGAACGTG
GTGGCGGGGGCATGCACGTGAACCCTGAGAAATCTCAGATATTCCTCAGTGCAGATGGTGATGTT
AGTATCCCTCAACTAAGCGAAGGTGAGACTGACTATGATAGTGAATGATTCCGGGGAATTGGATA
GAGTAACCTATTCATAATAATGATGAGTATCCCCGGGGGCATGTCCTACTTTGTGAAGTAAGGTT
CCAAGAAAGGGAGAGAAGAGATAGATGGATCTGAACCTGGAATCAAAGGGATCTGCGAAAGGGAT
TTTGAAGAATCTTACGTCCTTGAGAAAAGTAAAAAGATAGGAAAGGGAAGTAATGTCAAACCTGA
AAAAGAATATGGCACGAGAGATTGAATATAGGGAGGAATGAATCG
Right flanking sequence: Indices 103469 -- 103968
ACTTGAGGATGGAAGGGAGGAAGGAACCAATAAGCCACCGTCAGTGTACCAGTCATTGGGACAGG
TGCCGTGTGTTCGGTCTACCTGCCTTTAGTACGACCCGGATGAAAAGATGCTGACTTTTCTTAAA
GGTTAGGCCAAATGATTCTAAGCTTGAGGACCCATTCTATCCGGGCCTAAATGCTGGAGTTTCAG
AATTCACTCTACTTCTTACTGACTTTCGCCGAATATATCCTATGTGCTTAACACATTGACGTCGG
CGGCTAAGCTTTCTTTCTAATGGTAAGCCGGGGATCTAATAGTCCACTTCACCCTATCAAACTTG
ACCTCGATATAGGTTGCTTTTTGATGACTAGTTAATAGAATAGACGGTATCTATTATTTTCTACC
TCCTCTACCTAGATCTCCTTTTCCTAAGGAGGGAGAGAAGACGGTTCTCCGGGACGGAAGACATC
TCTCACTCGTACATATATGGATGGGTTTTCTACCTCAGAAAGGGA
Found at i:118813 original size:16 final size:16
Alignment explanation
Indices: 118792--118824 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
118782 AGGCGGAGTA
118792 TTCAAGTTGTCCCTAC
1 TTCAAGTTGTCCCTAC
118808 TTCAAGTTGTCCCTAC
1 TTCAAGTTGTCCCTAC
118824 T
1 T
118825 AACTAACGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.30, G:0.12, T:0.39
Consensus pattern (16 bp):
TTCAAGTTGTCCCTAC
Left flanking sequence: Indices 118292 -- 118791
TCAACAATGTTTTTTCATTTGATCCAATAGCCCTCCGTTAGATAGGAACAGCTTTGCTAAATACT
GAGAACTCTCGAATAGAATATGAGAAGGGAAAGATCCTTTACATAAGGAACTATTGATCATAGGC
GTACACTCTGAAAAGAATTGAATGAAACTCTCTTGTTTCGTCAACTTTGATATCATTAGCTGTCT
CTGTAGCTGGCTCTCATGTCTGGTGTTCCAAGTAAAAACTTTTCAACTAGCTGGGTCACCGCTGT
TTTAAACCCTGACTTGGAATCAGAGCCATAAACGAGTGATTCGGTCGGACGGACGATTGAGTTCT
TAAAGCTTGGATCGGCACTTCTTGTGTTGAAACAAACACGCTGTTGCTAGCGCCCTCAACGCTCT
CTTCGATCCTTCGCAAACATAGCTCCTTCTACGGGAGATAACTTTCGATCACTTTCATCTCAATT
CGTTTCATTGGCTGGTCGAGTGGATGATTAGACACAGGCGGAGTA
Right flanking sequence: Indices 118825 -- 119324
AACTAACGGGTCTAATTATCGCTGGCTCACAGGCTCCTTCGAAGCAAACATTCGCAGCGCCCCTC
GCATTCAAGCTCTTGCTTTGTCCTGCGGCCTGCCCTCTAAGCAAAAGCAAGATCTAGACAAGAGT
GAAAAGCAGTCAGAATATTAATAATCTAAAAAGGCCTTCCTTGGTTGTGTAGCTAATCCCCCTCC
TTGACAAGAACAGAATTTTTGCATCTTCAAACTGGTTATGGGTGATACCCTCATTCCCCATTAAC
TCACTAGAAAGCCCTTTGAATAAGCCTCAGGAACACCCATTCCTTTCGGATCAGGGGGTGGTTGT
TTTAACTACTCGTTCGGGGAACATTAGACAAAGTTACTTATTTGAGAAAGTAAATGAACCTGAAA
TAGGACCTATGTGATAGTTTGCAGCATGAGCATGTAGATGCTGGTTATGGTATCAGATCTGAGGA
CCAAGAATTTCCAAAGGATAGTACTAGACTCAATAAGAAGCTTTC
Found at i:121557 original size:19 final size:19
Alignment explanation
Indices: 121533--121570 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
121523 TGCACCCACC
121533 CAGTGAGTAACTACTAATG
1 CAGTGAGTAACTACTAATG
121552 CAGTGAGTAACTACTAATG
1 CAGTGAGTAACTACTAATG
121571 TTACGAACAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.26
Consensus pattern (19 bp):
CAGTGAGTAACTACTAATG
Left flanking sequence: Indices 121033 -- 121532
ATGTTCCTCTTTGCCATTGCCCGCGTCTACTCCTATAACCGAATCGATGGCCTATAGCGCCATGC
CATAATGAAATTCTTGATCATTTCTTTGTTCGTAACATGGCGTAGTGTATCACTGGGTGCCACAA
TCCCATTCAATTCTTGTCCATTCAATACCATGGATATATCGATTTCTATTTTCAGAAAGCTCCTA
TTTATTTCGATTGATATCTCTAGCAAATATATGCGTAGCGTATGTCAAGATAAAGTAAATCAATC
CGTATGACGGCAGGGAGCGGAGGCAGCTTCAACTCAAGTGAGGAGCAAGCTTACCTCGGGCGGGT
AGATTGATCGGCTCCTTCATATCTCGGGATTTCGCTTAGGCCACCCAGGCCATACCATAGAAAAA
AGATCTGGTTTCCTTTCCCTCATCAACCTGCCGTTCTTTTATTTCACGAAAGAATCTTTCCGTCC
GTATTGAGCAACTCAAATTCCTAGAAAGCCGTTGGTGCACCCACC
Right flanking sequence: Indices 121571 -- 122070
TTACGAACAAAGAAACTTTCAAAAAGTGGACCCAACAAGCAAAGCAACGGATTGGGCTGCACTGC
CTTTCGGCGTTTTAGTTAGGCGCATCCTCTTGCGGGATGAAAATCTGCCATAGCACGCTCCGCGC
CTTTGAAGGAACATTTGCTCGATGATGGTCCTACCCTACGCGGGCTTACTAACGATGGCCAAGCA
CGCAGTCATTCCCGTTCTATTTGATAGGGGAAGCAAGCTAGTCAAAGAAGAAGGAAGCATGGGTA
TAGGTAAGTCTAGACATATTGACACGGGCGTATACTGAAATAGGCATAAGGCCGCTAACGCTAAG
GAGACAGCACCGCTTCTTTGTTCGTAACTAGGACATGTATTGATGCTAGAGGCAGACTCCTGGCA
CTTATCACTCCTTAGATGAAGCAAGACAAGAGTGAGTCCGCTAAGGGACAAGTATGACTAAAAAA
ATGATGGCAGATTTTTATGGAAACGATTCTATTTGAGTATATTGT
Found at i:123021 original size:31 final size:31
Alignment explanation
Indices: 122983--123044 Score: 124
Period size: 31 Copynumber: 2.0 Consensus size: 31
122973 GTCAGACACA
122983 TCACGAGCCGGAACAAACGAGTGCTTTCAAC
1 TCACGAGCCGGAACAAACGAGTGCTTTCAAC
123014 TCACGAGCCGGAACAAACGAGTGCTTTCAAC
1 TCACGAGCCGGAACAAACGAGTGCTTTCAAC
123045 AATAAGCAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.29, G:0.23, T:0.16
Consensus pattern (31 bp):
TCACGAGCCGGAACAAACGAGTGCTTTCAAC
Left flanking sequence: Indices 122483 -- 122982
GGAGAAGGGAGGGCCAGGTCTAAAAGTGCCGAGTTGGGTTTGGGACAAGATCAGGAAATAGTGCA
TCTTATATAGTGGGTGCCAACTTGATTGCTGCTGGGATTGCTTGATAGGAAACTTTGATTGATAC
GAGCAGATGTGAATGAATTGAAATAGTCAATAGTGGTGATATGATCCCGGTATCTACACTCGGAT
CTACTTCTGCTACCGAGACTGCTGCTACTGTAAAAGCATCAGGAACGTGTCAATTCACTGAATAA
AGTGCTCTTTCCATTGATTTATGGATGAAATCACGAAAAAGAGAAGGAACCACCGATTCTGCATC
AAAAACAGGGGTTCTGGAGCCAGTTTCTCAAATCGTAAGTAGATCCAATCCAGGGCAGTTGATAA
GTGAGGTTCTCCGGTCGAATGCAAATAAGCCAGAGCGTATCTCTTGTTTCGAGGAAGAAACAAAC
ATCCTGGTCTCAATAGATCTTGATTCTATGCATGCGTCAGACACA
Right flanking sequence: Indices 123045 -- 123544
AATAAGCAATACCCGAGCTTCCTTCTACCAACCAGGATTCCGATACCAATTCCAATCTGGCACAG
CACAAGGAAGTAGCGCACCAGAAGAACCAATACGAGAACCCTTCCTTCCAGCCAGAATCCGTCTT
TCTTGTCCTTTGCATTCGAGGAATGGGATCTGCCTTGTGGAAACAAAAGCTATTTGTTCGAGTCA
AGCAAGCGGACAGTCAGCTAAGAATACTGGAAGAGAACTCTCTAGCCCTGCACTTAAACTAGACT
AGAAATCCGAAAAAACACTAGTTTTGGCCCATAGCGAAATAGAGTTTTTCTTCTCCGCGGACTCC
CCATGCTTGGCGCCATAGGCTTTAGGACTTTTGGCACTAGGGAATCATACTTTGATCAGATCCGT
GGACAGGCTCCCGAGGTCAAATCGGATTATGGACTTTTCCAGCTAAGTGAAAACGCACTTCACTA
CTAGCAAAGAAGTCAGCTCAGGGCAGGGCCGGTGGTAATCTCAGA
Found at i:125386 original size:24 final size:24
Alignment explanation
Indices: 125342--125387 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
125332 CTTCTTCCTA
*
125342 CTAGCTACGGTGCAGCACCTGTTC
1 CTAGCTACGATGCAGCACCTGTTC
* *
125366 CTAGCTACGATGCTGCTCCTGT
1 CTAGCTACGATGCAGCACCTGT
125388 CCGCCCCTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.15, C:0.33, G:0.24, T:0.28
Consensus pattern (24 bp):
CTAGCTACGATGCAGCACCTGTTC
Left flanking sequence: Indices 124842 -- 125341
TAGATACGGACGACATGGAAAAAATCCAGGTTTATGTACGACATGCTCTTTCCTTCCTTCATTCG
GTGACGCACAGAGGTGGCAGAGTCTTGTTCCTGGAGTCGCTCACAACTTTTGGGAGCACCGAGAT
CCTGAATAAGATGCTGCACGAATTGGCTGAGGTGTTGGGAGCCCCCAATAGAGAAGGACGATGCG
GAAAGGGATGATGGGAAAGTGACAAGACTGGACTTCGACTCGTTTAAAAAGAGTTGTAGCCGTAC
GGAATTCCAATTGGAATGGACCCATCTCATGATACAAGTTACCCTGGATTTCTTTCTATTCCTAT
TTCGCTGGGCAATTCTAGTTTTTGTTATGATGATCTCATGGATAGTAGTATTGAGTTCTATAAAC
AGATTGATAGTAGGTTTTAAGATAGCTTAGCCCTTGCTATGATTCAATTTGTATTGGAGAAGAGG
GGCGCCAACCCTATGGGGAATGTAGCTATGCTGTACTTCTTCCTA
Right flanking sequence: Indices 125388 -- 125887
CCGCCCCTTGATTTATCACCGCTTTGGTCTTTTATTGGTCATTGATTTATAGACGGGAGGATAAG
TACCCTGGCTCGACCCCAGATATCGATTTAGCATTCCATTATCGGATCTCCGAAACGGGAAACCA
GAAAAGTAATCGAAATCGTGTGCCAGCGGGACATACGAAATTCACACTTTTTGACTCTCAATCCA
CAGGTGGAGATACCAGGGGTGGGTTTTCATGGCCTATAGTCTCCCCTGCCGACGAAGCACGAACT
ACTTGTTGAAATCGCGGATCCAAATCTTGCATTTCTCCTTTACTCGTCAAAGGCCTCGTATTGTT
ATTCCCATGATTCATGTGGGCTATCTGCTCTTTATTGTAGGGTCCTACTCCCACCTATCCTTAAA
AAACGATGTGAGTGGCTCATACTAATCAAATGTACAAGTAACTGACCCTTATCAAGCTTTCCACA
CATAGTGTTTTGATCTAAGATTGCAATTCTTCCATGTTTCCGCAG
Found at i:126411 original size:21 final size:22
Alignment explanation
Indices: 126375--126416 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 22
126365 TCGAAAAGTA
126375 CGGACCATTTTGAAAT-AAAAC
1 CGGACCATTTTGAAATCAAAAC
126396 CGGACCA-TTTGTAAATCAAAA
1 CGGACCATTTTG-AAATCAAAA
126417 TAGAAAAAGA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 4 0.21
21 11 0.58
22 4 0.21
ACGTcount: A:0.43, C:0.19, G:0.14, T:0.24
Consensus pattern (22 bp):
CGGACCATTTTGAAATCAAAAC
Left flanking sequence: Indices 125875 -- 126374
CATGTTTCCGCAGTAGCATATTGTTCCATGGAGCTAGGGTCCAAAATAGGAATCAACAAGTGTTT
CCACGACTCTACCGCCCGGCCAATCCTGTTCCACTGAATCCCCTCCCTTTTTCATGGCCACATAT
CTTTATGGCTAAGGAGTGGGAAATCTTTCTCCTGTTACACAAATCAAATGTTTCATTTCATCCGG
GAAAAGCCACCTCTTTCTCCACAAACAATGTCTTTGTCATTTGATCCTGTTTTTATCCGTTAGAT
AGGAACAGCTTTGCTAAATACTGAGAACTCTCGGATAGAGTATTAGAATGAAAAGACCATTAATT
ATATAAGGAAGAACCCAGGGTTCTAGCCCATTCCCATTCCTAAATCAATAATTCGTAGTGCTTTT
GCCTTTCTTGCGTACTCCTGGTGAACCAGTTGCTAGCCATATGTTTAGGAGGCTATTTTCTCCTA
TTAAGTAAGATTCTTAAGCTTAATAAGCCCAAAGATCGAAAAGTA
Right flanking sequence: Indices 126417 -- 126916
TAGAAAAAGAAATCTAGCTACTCTCTTCTCTGTCTCCTTCAGAAAAAGAAAGCTAAGGCAATTGG
TGTTGAATAAACAAAACCACACCGAACCAGTCAGGAGTTTTCAGAGATTATGCCCAGCGTCACAT
GACACCACTTCATTGTATGCAACACGAGGAACCGATCAAGAAAGACGAAGCAGACATGCACAAGT
TCAAGAGCGAGGTCAGACAAGCATGTATCAGAACAGCAACGTGATCAAGGCTGCAGCTGCTGCTG
CGAGGACTAACGTCACAAGGGAAATCCGGCAGGAACTGAAGGCCACCGATCCCGACCGATCGCGC
GGCACGGACGTCGAAAGCTCCTCCATAGTCGACGGGGGCACTTCACTTGTCCTGGGGCGGCAGCA
GCACGGACATGCACAACTGATTTCAATTAGTACACACGAAGTATGATCAACGATTCCGCAAAGAT
ATTAATTCCAGTGTTCAAACGATCAAATGGATGAGATGATCAACG
Found at i:152520 original size:21 final size:21
Alignment explanation
Indices: 152496--152557 Score: 61
Period size: 21 Copynumber: 3.0 Consensus size: 21
152486 TTCCTTGTTT
*
152496 ACGTAGCTCTTCTGTTGGATC
1 ACGTAGCTCTTCCGTTGGATC
* * *
152517 ACGTAGCCCCTCCGTTGGATT
1 ACGTAGCTCTTCCGTTGGATC
* * *
152538 ACGTTGCTCTGCCCTTGGAT
1 ACGTAGCTCTTCCGTTGGAT
152558 TACTTGAGTC
Statistics
Matches: 32, Mismatches: 9, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.13, C:0.29, G:0.24, T:0.34
Consensus pattern (21 bp):
ACGTAGCTCTTCCGTTGGATC
Left flanking sequence: Indices 151996 -- 152495
AAATCAGACATCAGTATCACAACCTAGCGTTATCCAGATCTTTCGTTGATCCAGGCGATTTTGGG
AAGGACTCAGCATTCTCCCACAAAAGGCCAGGCCTTGAGTTTCTAGCCGACTCATATAAGTCAGG
GTGTCAATTTTTTTTAGGTGACGTATCTTTCTCTCTGATGTTCTCCGTGGTCTCAAAGGATGATC
AGTCGGATAGCGACATTGGTAAATAAAAAGAAGAAGTTTACACGCCGGGTGCATACTTCAGTGCC
ACTAATTAGCGACTTTTTTTTGCCCTTTACCTACACCATGTAGACCGGAGGATTACACAGAATCC
CATTGGCGAGTTTCAGACAGCTAGGTTATTCAAGAAACTTGGAATACCAACTCCAATGCTTGGCT
TGCTGAATCAGCATATGGATTACTTCATTGAATTTCTCGGCCCGAGCTCTTGTGATTGGTCCACT
TGGCAGGTGGAGTGGATCCTTAGCAGGTTCATGTGTTCCTTGTTT
Right flanking sequence: Indices 152558 -- 153057
TACTTGAGTCATTTCTGGGTTTACTTGGCTGCTCCGCAACATGTTGGTTACTTGATCCTTCGCTT
TGTTTACTTGGGAGCCCAATACTTATTGGTTGGGAAAATTACCTTCAAAGGAAAATGCTCCTCCC
ACTGGACCGAAAAACCCATATATTCCCATGGGAATGGGTGGTGCTGAACAAGCAGGCAGGCCCAA
CGTTGTTTATCTTTACTGCAATCCTGGTTAGGTAAAAGGAATTCCGCAGCAGCGGGTACGTGATT
AGTTACAACCAACGGAAAGACTTATTGAAATAATAGGGAATTTCCTCATCCAGTCTACTCCTAGG
ACTACATCATATGCTCCCAACTCCATGGCCAACAAATCAAACTTCAATCGATATCCTTGCATCTC
CCACTGTACACCAGAACACATCCCATACAATCGGCCCGAAGAGCATCAATGAGCAGGCCTACTAA
ATAGGCATAGAGATACATTAGCCGAGTTTGCTTACAACAACTGCT
Found at i:171301 original size:70 final size:70
Alignment explanation
Indices: 171188--171327 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
171178 AAGCAACGGA
171188 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
1 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
171253 ATTTT
66 ATTTT
171258 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
1 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
171323 ATTTT
66 ATTTT
171328 CTGAAGTGAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (70 bp):
TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
ATTTT
Left flanking sequence: Indices 170688 -- 171187
TTGTACAACTCCGTAGGGCGCGCTACGGCAACTTTTCTAACTACGCTTGCTGCTTGCTGGTTTTT
CCATCATCCAATCCACAACAAATCGAATGAAACCGCTTCGGATTTCTTTTGATGAAAACCCTTGT
TCCGCTCTCGCTCGCCGCTACTAACGGGGTCTCGGTTGATTTTCCTTCCTTTAGCTACTCAGATG
TTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTT
CCCGATCGGAGATCCATGGATCACAGAAAAATCTCTCCCCATGGCCTTTCGCCTCTGAAAGCGTC
CTTCCTTCTCAATGCCCGGGCATCCATCCAATGCATGATTTTCGATAGCGTCGAACATGAGCGGA
CACCCACACAATCTCGATTTGACACAGCAACACTTTCCACCTCTCTTCCTTCCCTTGGATCAGAT
AGGAAATCCTCACTTTTCCAAGACAGAAGAGAAGCAAGCAACGGA
Right flanking sequence: Indices 171328 -- 171827
CTGAAGTGATCTGTCCAACTAAGTAGAAAAGGACACTAGAGTGTGGCTACACGTGGTATAGGGCT
GCTCGTCCCGCCTGGTGTTGAGGGAGCTAAAGTGGAACTCTCACATACATGTTCCTTAAGTTTTT
AGCTCGCTAAATGATACAGTCCTCGCTGATGGATCGGCAAGTACTCCACGGTCAGCGGCTATCAG
CTAACGTTATGGGCCGTTAGTGGTGGTTCATTGCCTATAGTGTTGTAATCCGGAATCCAAGTTTT
GTGATAACCGTGTTGTTTACTTTCAGTGTTGTTTATTGTTCACAGCTGGATTGAGCTCAGTTGAG
AGTGTCATGCTCTGTCAATATCTGTTGCAGGAGTTGTCATTCTCTGTTACTAGAGTTGTCAATCT
CAGATGCAGGAGTTGTCAGTTGCAGCCATTCTCGCTGTGTCAAGCTTGTGACTTGCGTTGTATCA
GGTTGGTAACAGCTTGTATCTCGATAGGACTGAATGTAGCCAGGA
Found at i:171698 original size:22 final size:22
Alignment explanation
Indices: 171665--171735 Score: 81
Period size: 22 Copynumber: 3.2 Consensus size: 22
171655 TGTCATGCTC
*
171665 TGTCAATATCTGTTGCAGGAGT
1 TGTCAATCTCTGTTGCAGGAGT
* *
171687 TGTCATTCTCTGTTACTA-GAGT
1 TGTCAATCTCTGTTGC-AGGAGT
* *
171709 TGTCAATCTCAGATGCAGGAGT
1 TGTCAATCTCTGTTGCAGGAGT
171731 TGTCA
1 TGTCA
171736 GTTGCAGCCA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 1 0.03
22 38 0.95
23 1 0.03
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.37
Consensus pattern (22 bp):
TGTCAATCTCTGTTGCAGGAGT
Left flanking sequence: Indices 171165 -- 171664
ACAGAAGAGAAGCAAGCAACGGATTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCG
TTTTCTTGCTTGATTTTTATACGATTTTTTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGC
ATCCGTTTTCTTGCTTGATTTTTATACGATTTTCTGAAGTGATCTGTCCAACTAAGTAGAAAAGG
ACACTAGAGTGTGGCTACACGTGGTATAGGGCTGCTCGTCCCGCCTGGTGTTGAGGGAGCTAAAG
TGGAACTCTCACATACATGTTCCTTAAGTTTTTAGCTCGCTAAATGATACAGTCCTCGCTGATGG
ATCGGCAAGTACTCCACGGTCAGCGGCTATCAGCTAACGTTATGGGCCGTTAGTGGTGGTTCATT
GCCTATAGTGTTGTAATCCGGAATCCAAGTTTTGTGATAACCGTGTTGTTTACTTTCAGTGTTGT
TTATTGTTCACAGCTGGATTGAGCTCAGTTGAGAGTGTCATGCTC
Right flanking sequence: Indices 171736 -- 172235
GTTGCAGCCATTCTCGCTGTGTCAAGCTTGTGACTTGCGTTGTATCAGGTTGGTAACAGCTTGTA
TCTCGATAGGACTGAATGTAGCCAGGAGTTGTCTTAGGTTAGTCTAATGTGCCAAAACGTTAGTC
AAACCACCTAGGTTGTGTTTGTTCTGGAGAGTTCAGCTAGTCCGAGTGATCTGGGTTATCCTACG
TTTTATCCCTGTTTCGATCTTTTTTTCGACTATAGGGGTTTTGTAGCAGCCCAGCAGCATCCGTG
TGACAGAGAGTCATATTAAGGATATAATAATGCTTTCCCCCCCTTGCAGAAAAAGTAGGAAAATG
GACTGAAATTGTTGGATAAGTGGATTTGCAGTATCTCAACAATCAGAACAGCGAATATTCCATCA
TCCAAACTAAGCTTCCTCAGATCCTAACCCATTGGTCATTATCGAGCCTCGTGACTCCGGCTGTG
TTGATATCTTCGTATTACCTGTTATCATTCTATCTATCTGGTTAT
Found at i:191718 original size:21 final size:21
Alignment explanation
Indices: 191688--191730 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
191678 TTCGACTATA
*
191688 TCTCATTCTATAGAAACCATT
1 TCTCAATCTATAGAAACCATT
191709 TCTCAATCTATAGAAACCATT
1 TCTCAATCTATAGAAACCATT
191730 T
1 T
191731 GCTTTAGGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.35, C:0.23, G:0.05, T:0.37
Consensus pattern (21 bp):
TCTCAATCTATAGAAACCATT
Left flanking sequence: Indices 191188 -- 191687
GCTTTGGCCAACCCTCTTTTCCAAGTTCCTCTTGTTTATCCAATCTGTATTCCAATCATAAATCC
AAGGTAAGATCAAGCCAAAGGGGAATCTAGGTACCGTTGACCCAGGAAATCAAGTATCAAAGGAC
CCGGGCAATAGGTTTATGACTGAACTGAAACTAGAGCAGGGAATAGCAGGATGCCTATGTTTCCA
ATACAGAAATCCTTAACAGAACAGAGCACAGACAATAGGGCCAACTATTGATCTTACTTTCCCTC
AATAAATAGTTTGGATTGGATAAACAATCCTACTTTCATTCCAATCATAAAACAAGGGAAAAGAT
CAAGGGAGAAAACCCTTCCAAGAAAACTAGTAACCAAACCCTGACGAACTTGCATTTGTTGAGCG
AAAAGAAGAGTTCAACAGGAAGAACGTATGAAGAGATTGAGATGTTTGGATCTTGGCTAAATTTA
TAAGCGAAGAATGCACGTGAAGTATTAAAGGTACATTCGACTATA
Right flanking sequence: Indices 191731 -- 192230
GCTTTAGGTAGACGTGATGGTACTTCCACTATTTTGGCATCTTATGGAACCCAATTCGAGATATA
TAAACTAGATCCTTGTTATTAGAATGATGATCTCTTGGCTATGACTGAGTCATATATTAATGGAA
ATGGTTTGCTCCTCCGAAAGTCCAAGTTGAGTCCAAGTAGTGGCAAACTAGAATCCTTCTTTTCT
TTTCCCTTCGTGGTTAGTTTCAGTTCAAATGACGAATTGAGACAGAAACCAATGGATTCCAGTGG
CTGGGGGATCCTATGTCTATAGATAGATTCAAGTACCATTCTATACCCCTTCCCTAGCGCCCTAT
AGACCTGTTTTGCTAAGTGGGTCCTACTTAGCTGGTCGGCCTAGGGGGGGATGCAATTCAAGAGA
CAAGTTCTACAAGTTCTCATGGCCGAGATCCCCGTATTGGTAACGGGGCTGGTGCTGACTCGTTC
AGAGAACAGACCCCCGATGTTCTTGGGAAGAAAGAGAGAAGGACG
Found at i:215360 original size:12 final size:12
Alignment explanation
Indices: 215343--215367 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
215333 AGAAATGGCG
215343 AGCTATTTAAGA
1 AGCTATTTAAGA
215355 AGCTATTTAAGA
1 AGCTATTTAAGA
215367 A
1 A
215368 ATGTGAATTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.08, G:0.16, T:0.32
Consensus pattern (12 bp):
AGCTATTTAAGA
Left flanking sequence: Indices 214843 -- 215342
CAGTTCTTGTACGGAAGGCCGTAATTCCGGTAACCTCGACTGCTCTAAGAATGATCCGGGCTAGC
CGGGCACATCACATCAAAGTTAGGTCATTTGTCAAAAACATGGCAAATAGCTCAGTTGGTTTGGT
AAGGGAGCTATTCTCTCACTTAAACCACTCCCATATTAGGTATTCTATCTCGTCTTAAAGTTCCC
CCGCATTACCCATAACTTACCACCTGTATCTCCGGAACTCAAATCGCAAAATGACAATGCTTTCG
ATAGTCTGTACTAAATTACTTTGTACGAATGCACATCTCGGCCGTCGGGTAGCTGATCACCATTT
CAAAGTCTATATCCGTGGTTCAAGAAATGGAATTGCTATTCTCGATTCAGACAAGACACTGATTT
GTTTACGAAACGCTCTTCATTTTATAGGATCTCCCAGTCGTCAAAAAGGCCGTTCCTTCTTTTTA
AAGACCAATCATTTATTTATTTATGAGATAACGGAAGAAATGGCG
Right flanking sequence: Indices 215368 -- 215867
ATGTGAATTCTCATTGTTTCGATGATTCTCAATGGAAGATCGGGGCGTTTTTGACCAATTCTTTT
GCAAATAAAAAAAAATTCCGTTCAAGAAAGAAGAAGATCAATTTTGGGTTGAACCAACAACCTGA
TTGTGTGGTTATTCTGAATGCAGATAGAAAGTCTTCGGTCATACTGGAAGCTGATCGATCACAAA
TACCTATTCCATCCTTAGTTGATTCTACGATCCCATGGGAATCCTATAAAAGAATCACTTATCCC
ATCCCAGCGAATGATCCTATACAGTTCGTATATCTATTTCGTCATTCGATCATGAAAACAGTGAT
TCTTGAACAGAATGCGATTAGTAGAGAAGCGCAATCTCTCAGAGTCACTTTGAGTACGGGGAAGT
CCGCAGGAGGGATGAGATCCGCCTGCTACTCCACCTCTTCTTCTTCCCCAATAGACGAAGAAGAA
AATAGGGCCAAGGCGCTATTGGAGATGCGCAAAAAATATCCATCG
Found at i:232975 original size:12 final size:12
Alignment explanation
Indices: 232960--233052 Score: 68
Period size: 12 Copynumber: 7.8 Consensus size: 12
232950 GTCGAGATCC
232960 GATGAATCAGTT
1 GATGAATCAGTT
*
232972 GATGAATCA-TCA
1 GATGAATCAGT-T
**
232984 GATGAACTC-CCT
1 GATGAA-TCAGTT
232996 GATGAATCAGTT
1 GATGAATCAGTT
*
233008 GATGAATCA-TCA
1 GATGAATCAGT-T
**
233020 GATGAACTC-CCT
1 GATGAA-TCAGTT
233032 GATGAATCAGTT
1 GATGAATCAGTT
233044 GATGAATCA
1 GATGAATCA
233053 TCACTCTCCA
Statistics
Matches: 63, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
11 6 0.10
12 53 0.84
13 4 0.06
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.28
Consensus pattern (12 bp):
GATGAATCAGTT
Left flanking sequence: Indices 232460 -- 232959
GCATGCTATCCATTTGTTATTGGTGATAGGAAGATGGCTCAATCATTGAACTAGCATTGAACAAC
CTACTTCAGAAAAAACTTAGAGTTAACCATCTAGTGCGAAAGTGCTAGTTTCCCCCTCCCAGAGG
TGAGAAGGGAGATATGAGCGTGGCGGTATCTTTTCCTCTTTTGATAGAAGCCCACATGCCCACTC
TTCTATCCCACCTATCCACATGGGGTATCAGTGGCCTCGTGATCTCCATGAACAGAGATCACTAC
ACAAAAACAACTATATGAAAAACTTGCTTGCTTCTTCGAATCTCGAAATAACAGAACATATAGAA
AGTGTTTCTGTGATTTTTCCATTCTCTTCGGGGAACCTATAGAAAGATTATCAGACGGCTTTCAT
TCCCTTCAGGGGGGGGTGTTCCTTCAGAGCAGTCCATATCATCAGATGAACTCCCTGATGAATCA
GTTGATGAATCATCAGTTAGCTCATCATAATCCGTGTCGAGATCC
Right flanking sequence: Indices 233053 -- 233552
TCACTCTCCACCACATTTTCATGATCTGGAAAAGGGGGCTGCCCCTGCCAGAATTCTGCAGCTCC
CGGGGGGAGAACGTTTAAATCAAAAGGAAGAACAAGGGCGAGTAAATGATGGAGACTAAAAAAAC
GATTTAAGGTGGCATTGTCCACGGAGAAACCACCCCAAAGCCAAGTCACTATGGTATCTCCTACT
ACTGGTATGGCGCTAGCTAAGCTTGTAATTACTGTTGCTCCCCAAAAGCTCATCTGACCCCAAGG
TGGTACGTATCCTATAAAAGCTGTCACAATCATTAATAGGAATATTCCTATTCTGCCGAGTATTC
CATTCATTTTCATCATAATACTATGCTTCCTTGCCCGTGTGGAACATGTGTGAGCATTATGTTTT
TCCAACAAGTGATCCGACTGGAAGAAGTGTTATATGAGGACTTCGAGATCAAATAGAGAATCTGT
CTCTCCATTCCTCGTGAGCCACTTATTTCTCCGAAATCAGAGATC
Found at i:233007 original size:36 final size:36
Alignment explanation
Indices: 232960--233055 Score: 192
Period size: 36 Copynumber: 2.7 Consensus size: 36
232950 GTCGAGATCC
232960 GATGAATCAGTTGATGAATCATCAGATGAACTCCCT
1 GATGAATCAGTTGATGAATCATCAGATGAACTCCCT
232996 GATGAATCAGTTGATGAATCATCAGATGAACTCCCT
1 GATGAATCAGTTGATGAATCATCAGATGAACTCCCT
233032 GATGAATCAGTTGATGAATCATCA
1 GATGAATCAGTTGATGAATCATCA
233056 CTCTCCACCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 60 1.00
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28
Consensus pattern (36 bp):
GATGAATCAGTTGATGAATCATCAGATGAACTCCCT
Left flanking sequence: Indices 232460 -- 232959
GCATGCTATCCATTTGTTATTGGTGATAGGAAGATGGCTCAATCATTGAACTAGCATTGAACAAC
CTACTTCAGAAAAAACTTAGAGTTAACCATCTAGTGCGAAAGTGCTAGTTTCCCCCTCCCAGAGG
TGAGAAGGGAGATATGAGCGTGGCGGTATCTTTTCCTCTTTTGATAGAAGCCCACATGCCCACTC
TTCTATCCCACCTATCCACATGGGGTATCAGTGGCCTCGTGATCTCCATGAACAGAGATCACTAC
ACAAAAACAACTATATGAAAAACTTGCTTGCTTCTTCGAATCTCGAAATAACAGAACATATAGAA
AGTGTTTCTGTGATTTTTCCATTCTCTTCGGGGAACCTATAGAAAGATTATCAGACGGCTTTCAT
TCCCTTCAGGGGGGGGTGTTCCTTCAGAGCAGTCCATATCATCAGATGAACTCCCTGATGAATCA
GTTGATGAATCATCAGTTAGCTCATCATAATCCGTGTCGAGATCC
Right flanking sequence: Indices 233056 -- 233555
CTCTCCACCACATTTTCATGATCTGGAAAAGGGGGCTGCCCCTGCCAGAATTCTGCAGCTCCCGG
GGGGAGAACGTTTAAATCAAAAGGAAGAACAAGGGCGAGTAAATGATGGAGACTAAAAAAACGAT
TTAAGGTGGCATTGTCCACGGAGAAACCACCCCAAAGCCAAGTCACTATGGTATCTCCTACTACT
GGTATGGCGCTAGCTAAGCTTGTAATTACTGTTGCTCCCCAAAAGCTCATCTGACCCCAAGGTGG
TACGTATCCTATAAAAGCTGTCACAATCATTAATAGGAATATTCCTATTCTGCCGAGTATTCCAT
TCATTTTCATCATAATACTATGCTTCCTTGCCCGTGTGGAACATGTGTGAGCATTATGTTTTTCC
AACAAGTGATCCGACTGGAAGAAGTGTTATATGAGGACTTCGAGATCAAATAGAGAATCTGTCTC
TCCATTCCTCGTGAGCCACTTATTTCTCCGAAATCAGAGATCAGA
Found at i:245209 original size:29 final size:29
Alignment explanation
Indices: 245176--245233 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
245166 CCGAAACTTG
245176 GTTTAGTATT-AAGGTTCTTCTCTTCCAGC
1 GTTTAGTATTCAA-GTTCTTCTCTTCCAGC
245205 GTTTAGTATTCAAGTTCTTCTCTTCCAGC
1 GTTTAGTATTCAAGTTCTTCTCTTCCAGC
245234 CCCCCGGCCC
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
29 26 0.93
30 2 0.07
ACGTcount: A:0.17, C:0.22, G:0.16, T:0.45
Consensus pattern (29 bp):
GTTTAGTATTCAAGTTCTTCTCTTCCAGC
Left flanking sequence: Indices 244676 -- 245175
GTTGAGCAAATGAGTTTAAGGGGTGGTTTTCTGTTTACTTTTTTTCAGCCTACGTCGTCTCTCTT
CCAGAACCTCACAATCATCAGTGTCTGAAGTTTCATGATGAATATTGGTTTCACATTTTATTGCT
TACGTGAGGAAATATCAATTTGGAACTCGAATTTGTATTTGAGTTATGATGAGGAGTGAGGTAGA
TTCGCATTGTTGAAGAAAGCGAAGAAAAAGGATGCTGCTATGGCTTGCTTGTGGCTCTTTCTTCT
ATTGGCTAGTCTCAGGCATGATAGTTTCCATTTCTTTTGGAAAGCAAGTGCGGCTCAGTCATAAG
TGTTAGTAATAGCATGAAGTAAGTTGTCGGTAGCCGGCATTAGGTAAAAGGAAAAGCTTCTCAAA
AGCATCCAGAAATATCATAGAATGGTGATCGAGATCACCTTCACGGGAATCATCCTTTGCAAATT
GGGGGAAGGGAACCAATCAAGTCACCAAGAAGTTCCCGAAACTTG
Right flanking sequence: Indices 245234 -- 245733
CCCCCGGCCCCTCTTTGATAAGGAAAGTTTGCATTTCTCAAATAAAAAATGACAAATATGGTTCG
ATGGCTCTTCTCTACTAACCACAAGGATATTGGGACTCTCTATTTCATCTTCGGTGCCATTGCAG
GAGTGATGGGCACATGCTTCTCCGTACTGATTCGTATGGAATTAGCCCGACCCGGCGATCAAATT
CTTGGTGGGAATCATCAACTTTATAATGTTTTAATAACGGCTCATGCTTTTTTAATGATCTTTTT
TATGGTTATGCCGGCGATGATAGGTGGATTTGGTAATTGGTTTGTTCCGATTCTGATAGGTGCAC
CTGACATGGCATTTCCACGATTAAATAATATATCATTCTGGTTGTTGCCACCAAGTCTCTTGCTC
CTATTAAGCTCAGCCTTAGTAGAAGTGGGCAGCGGCACTGGGTGGACAGTCTATCCGCCCTTAAG
TGGTATTACCAGCCATTCTGGAGGAGCAGTTGATTTAGCAATTTT
Found at i:253338 original size:16 final size:16
Alignment explanation
Indices: 253317--253350 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
253307 AAAAAGCTTA
253317 AATAGACACAATTCGT
1 AATAGACACAATTCGT
*
253333 AATAGATACAATTCGT
1 AATAGACACAATTCGT
253349 AA
1 AA
253351 GGAAGAAGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.15, G:0.12, T:0.26
Consensus pattern (16 bp):
AATAGACACAATTCGT
Left flanking sequence: Indices 252817 -- 253316
GGTGGATTGGAGTTCGTCTCCGCCAATTAGAGATACGGTGCTGACCCAAGCTGAGTGAGTGAAGG
CTCCGGCTTGACCTACTAGCTGTTTGCTATCAATAAATAACTAGCTGACAATATGCTATGCTTAC
TCTCCGAGCACTAAAGCTATCGAGAAGTGATGCAACAAAGGTTGTTGAAGGTAAAAACCGTCAAA
CAGAGAAATCTTAATCGTCAGAACAACGCTGAACCTAACTTGTACAAGAGTTGGTAAGAAAGTGC
AAACGTTGAGTAAGAAATCGCCATAGGGCGGCACAAACAGAAAGAAAGGCTTCTGCCAATCGGAA
TAGGAATGCGAAATCCCAGTAAAAGGGTGTTCAGTCGAAGATAGGAGGATTCCTTTGATCCATAC
CGTCATCTGACGGACTTCCTGCTGACTTCGTCAATTGCTCTTTATCGCTTAATAGAAGGGAAATT
TCATGAGATAGATGAAAAAATGAATATCAATCGAGAAAAAGCTTA
Right flanking sequence: Indices 253351 -- 253850
GGAAGAAGTGATCAAAAGTACGAGGTCGGCATAGGAGATATGATGTGTCGGAGGCAGAAGGCACG
GAGAAGTCAAGATCTTCCAAGATAAACCCATTCCGATGCCTATAAAATCAGGTGCACCGCGTCTA
TACTACAAAAGTGTGATAGGTTTCTTCGTATTTCTTCCGCCGACATCGCTTTCTTATTCCTAACA
CAATTGTTTAGCTAAGTTTGCTAACGAATCAGGGAGAATCAACAACGAACACCGCATTTTGAAAA
GGAGACGTGATTTATTCCTACCGTCCTGAACACGTCTAGAAACAGCAACCTCGTACATAATACCA
TTTCGCATTACAGTATCCACTTTCAAGTCGGGGTGAAACTTACTAAGATGTTGGGTCATCAGAAT
ACCATCGAATCGACTCATGTTATGCCTGGAATGGAATAAAAACATGAGTCAAATGCATCGTAGTC
CCTCAATCGAACAGTCAACTAGTTCATATCTAACCTTATGTATTC
Found at i:259340 original size:13 final size:13
Alignment explanation
Indices: 259322--259346 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
259312 GGACCGCCCA
259322 CATTCATTCATTT
1 CATTCATTCATTT
259335 CATTCATTCATT
1 CATTCATTCATT
259347 GTTCTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (13 bp):
CATTCATTCATTT
Left flanking sequence: Indices 258822 -- 259321
GCGGTTCGACTCTTGCTTGAGTTTGATAGGTGAGATATTTATTTAAGGAGGTACGTTCTATTTCT
TTTCCTTTGTTTTATTCTGGCTGGATGGTGTACTAGCTTGGTTTGGCTGGCACTATTGGGTATCG
TGGGCGTCTCATCCCTTGGAGGTTAGGGTATTGAAAACACATTGAATAGAGATCCGAATCGAATA
CAAAAGATCGGAAATGTCCGTTCGTTCTTTTCCACCTGATGACGAAGTGCCCGGTCTCAAATGTA
AGTGCTTTCTGGCTAATATAGATAGCCGCCTAAAAAGCACACAGGAAAATCAAAGAAATGGATAT
TTAGAGCCACTTTAGAGCTCTGGCACCACTCCGTTCGACCTATCAGCTCCCCAATGCTTAACCGG
ACGGACTGATTCTAGAGTTCTGTTTTAGTAGAAACTTGATTGATTCGTTCCTGTATAAACAGCTA
AAGGAAAGGCTTCTGATCACACACTTGTCGTCTGGGGACCGCCCA
Right flanking sequence: Indices 259347 -- 259846
GTTCTGTTGTGGATTCGAACCACTAGCACAAATTTGATTTCGAGTCAAAGGGCGCTTTTTTAGGA
TTTCCAGTCCTTTTACCTTTCAGAACCTCTCTTTCTAAGTTATGTTTTTTTTATTGTTGTCAATT
TCCATTCGTTTAGTACGAGATCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTT
CTGTTCAAAAACCTCGTACGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCAGTTCTTCC
ATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGGTTGACCCAGC
CCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAA
CCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAACAACCGAACC
CTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAG
Found at i:263197 original size:70 final size:70
Alignment explanation
Indices: 263084--263223 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
263074 AAGCAACGGA
263084 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
1 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
263149 ATTTT
66 ATTTT
263154 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
1 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
263219 ATTTT
66 ATTTT
263224 CTGAAGTGAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (70 bp):
TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
ATTTT
Left flanking sequence: Indices 262584 -- 263083
TTGTACAACTCCGTAGGGCGCGCTACGGCAACTTTTCTAACTACGCTTGCTGCTTGCTGGTTTTT
CCATCATCCAATCCACAACAAATCGAATGAAACCGCTTCGGATTTCTTTTGATGAAAACCCTTGT
TCCGCTCTCGCTCGCCGCTACTAACGGGGTCTCGGTTGATTTTCCTTCCTTTAGCTACTCAGATG
TTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTT
CCCGATCGGAGATCCATGGATCACAGAAAAATCTCTCCCCATGGCCTTTCGCCTCTGAAAGCGTC
CTTCCTTCTCAATGCCCGGGCATCCATCCAATGCATGATTTTCGATAGCGTCGAACATGAGCGGA
CACCCACACAATCTCGATTTGACACAGCAACACTTTCCACCTCTCTTCCTTCCCTTGGATCAGAT
AGGAAATCCTCACTTTTCCAAGACAGAAGAGAAGCAAGCAACGGA
Right flanking sequence: Indices 263224 -- 263723
CTGAAGTGATCTGTCCAACTAAGTAGAAAAGGACACTAGAGTGTGGCTACACGTGGTATAGGGCT
GCTCGTCCCGCCTGGTGTTGAGGGAGCTAAAGTGGAACTCTCACATACATGTTCCTTAAGTTTTT
AGCTCGCTAAATGATACAGTCCTCGCTGATGGATCGGCAAGTACTCCACGGTCAGCGGCTATCAG
CTAACGTTATGGGCCGTTAGTGGTGGTTCATTGCCTATAGTGTTGTAATCCGGAATCCAAGTTTT
GTGATAACCGTGTTGTTTACTTTCAGTGTTGTTTATTGTTCACAGCTGGATTGAGCTCAGTTGAG
AGTGTCATGCTCTGTCAATATCTGTTGCAGGAGTTGTCATTCTCTGTTACTAGAGTTGTCAATCT
CAGATGCAGGAGTTGTCAGTTGCAGCCATTCTCGCTGTGTCAAGCTTGTGACTTGCGTTGTATCA
GGTTGGTAACAGCTTGTATCTCGATAGGACTGAATGTAGCCAGGA
Found at i:263594 original size:22 final size:22
Alignment explanation
Indices: 263561--263631 Score: 81
Period size: 22 Copynumber: 3.2 Consensus size: 22
263551 TGTCATGCTC
*
263561 TGTCAATATCTGTTGCAGGAGT
1 TGTCAATCTCTGTTGCAGGAGT
* *
263583 TGTCATTCTCTGTTACTA-GAGT
1 TGTCAATCTCTGTTGC-AGGAGT
* *
263605 TGTCAATCTCAGATGCAGGAGT
1 TGTCAATCTCTGTTGCAGGAGT
263627 TGTCA
1 TGTCA
263632 GTTGCAGCCA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 1 0.03
22 38 0.95
23 1 0.03
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.37
Consensus pattern (22 bp):
TGTCAATCTCTGTTGCAGGAGT
Left flanking sequence: Indices 263061 -- 263560
ACAGAAGAGAAGCAAGCAACGGATTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCG
TTTTCTTGCTTGATTTTTATACGATTTTTTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGC
ATCCGTTTTCTTGCTTGATTTTTATACGATTTTCTGAAGTGATCTGTCCAACTAAGTAGAAAAGG
ACACTAGAGTGTGGCTACACGTGGTATAGGGCTGCTCGTCCCGCCTGGTGTTGAGGGAGCTAAAG
TGGAACTCTCACATACATGTTCCTTAAGTTTTTAGCTCGCTAAATGATACAGTCCTCGCTGATGG
ATCGGCAAGTACTCCACGGTCAGCGGCTATCAGCTAACGTTATGGGCCGTTAGTGGTGGTTCATT
GCCTATAGTGTTGTAATCCGGAATCCAAGTTTTGTGATAACCGTGTTGTTTACTTTCAGTGTTGT
TTATTGTTCACAGCTGGATTGAGCTCAGTTGAGAGTGTCATGCTC
Right flanking sequence: Indices 263632 -- 264131
GTTGCAGCCATTCTCGCTGTGTCAAGCTTGTGACTTGCGTTGTATCAGGTTGGTAACAGCTTGTA
TCTCGATAGGACTGAATGTAGCCAGGAGTTGTCTTAGGTTAGTCTAATGTGCCAAAACGTTAGTC
AAACCACCTAGGTTGTGTTTGTTCTGGAGAGTTCAGCTAGTCCGAGTGATCTGGGTTATCCTACG
TTTTATCCCTGTTTCGATCTTTTTTTCGACTATAGGGGTTTTGTAGCAGCCCAGCAGCATCCGTG
TGACAGAGAGTCATATTAAGGATATAATAATGCTTTCCCCCCCTTGCAGAAAAAGTAGGAAAATG
GACTGAAATTGTTGGATAAGTGGATTTGCAGTATCTCAACAATCAGAACAGCGAATATTCCATCA
TCCAAACTAAGCTTCCTCAGATCCTAACCCATTGGTCATTATCGAGCCTCGTGACTCCGGCTGTG
TTGATATCTTCGTATTACCTGTTATCATTCTATCTATCTGGTTAT
Found at i:274144 original size:39 final size:39
Alignment explanation
Indices: 274101--274180 Score: 124
Period size: 39 Copynumber: 2.1 Consensus size: 39
274091 CTCCAGATTC
* * **
274101 TGGCCGGTAGGAATTTGCCTCTTCTTTTTCCAACTGATA
1 TGGCCGATAGGAATTTGCCTATGATTTTTCCAACTGATA
274140 TGGCCGATAGGAATTTGCCTATGATTTTTCCAACTGATA
1 TGGCCGATAGGAATTTGCCTATGATTTTTCCAACTGATA
274179 TG
1 TG
274181 TCGATATAGA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.21, C:0.20, G:0.21, T:0.38
Consensus pattern (39 bp):
TGGCCGATAGGAATTTGCCTATGATTTTTCCAACTGATA
Left flanking sequence: Indices 273601 -- 274100
TCCGTTTCCGCTCCGAAGAGGAAGGTTTGGATCTTTCAATCTTATGTCGTGAGGGATGTGACCTA
TGTTAGGTCCATAAGATACCACAGCTTTTAGTGTTCTATGATTCACCTCCGAATAATGAGTAGGT
AGTTCGATCCTTTTGATTCTTATCTTCCTAGTAAACGGGGATCCGGAGCAATAGGTCGAATTACT
ATATAAAGAAGACTTTTCTACAAAAGGACTTATTGTTCGAGTAGGAAGATTTCGGTTTTTCTCCT
TCCCTCTTTTCAATAAGAAGAAGTATTTGAAATGAAACAAATTCCTCTTCATTCTGTTGTGCTCA
GCGAAGGAACTGCCTAAGCATACTTTTGCGGATCCAAACTTCTTTGTTCTTTCAAAGTCTTCTTC
TTGCATATAAGAACGCAACTTTTGCAATTCCTTGGATTTGAGTAGTAAGCGGCATCCCCTCTGAG
TTGTGAGTAAGCGGAACCATTCTTTTTTTGTTCTTCTCCAGATTC
Right flanking sequence: Indices 274181 -- 274680
TCGATATAGAAAGATCTCCTTATTTCAAAACCGCGGGTTCTCGCGTCATTTTCTTTAAAAGATAT
TAGATCACCGTGGGAAACTTTCAAATGAGTAATGGTTACCAGTCCATTATTCAAACAAACCCTTC
GATGACTTATCGGCTGCCTTGCTTGAGGAAGAGTGTCACTAAAATGGAGACGAACCGGAATCACG
TCCGATCTTGTTTCTTGATTGAGTAAAAAAGGGATATATGAAGTTAGTTCTCTTCCTCTGTGCAT
CTCCCTTATGGGTAAATCCCCATAATAAAGAGACAACTTTCGTGTAGTTTGTGATTTGATGTTAC
TGTTTCGATTTTCTCTCCGAGAAAGATTTCTTTTAATGGATCTCCTCTTGTTCCTCAATCTTCGG
AGAATACGGCGTTGGATTAGAGAAAGTTCTCTGTTCCGAACATTTCCTGGAAGTAGACGACACGT
TTTAAATCTTAATGCTGGCATGGCATATTTCGTTGAATCAGTCTT
Found at i:278930 original size:35 final size:35
Alignment explanation
Indices: 278884--278952 Score: 138
Period size: 35 Copynumber: 2.0 Consensus size: 35
278874 TGAAATTGGA
278884 TTTCTTACAAAACCCAGGATCTTCCTATTCGTAGT
1 TTTCTTACAAAACCCAGGATCTTCCTATTCGTAGT
278919 TTTCTTACAAAACCCAGGATCTTCCTATTCGTAG
1 TTTCTTACAAAACCCAGGATCTTCCTATTCGTAG
278953 GTGGTATACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.26, C:0.26, G:0.12, T:0.36
Consensus pattern (35 bp):
TTTCTTACAAAACCCAGGATCTTCCTATTCGTAGT
Left flanking sequence: Indices 278384 -- 278883
CATGTTTGGAATTCCATAGAGGAATCCCCAAGCAAAGGCCAGGACGCTAACGCTAACGCTATTGA
TATTCCTAGCGCTTGTTTTCGTAGGATGCCGAGGACTCTTGCTTGAATACAACTAGAGAATTCTC
AAAAGAATACGACTAGCTCTTTACCGCGGGGATGCGTTGAGAGGAATCAATTGTTTAACCCGGTG
ACCGGATAGGAGCCGTGACTGTGTGGGTAGCATTATCAAAAGAAGGAAATTCGCAGCGCTCTAAA
TTTCTCTATTTTGATTCTTTTTTTAGGGATTGCGCCGTTACTGTACCTGCTTTCGCTATTGCTGT
TCCGCTTTGCCGTTATCCGTCCCTTTGTTAGCATAATAGGAGGGTGCCTTTTTAGCGCAAGACGA
TGAAATAACAACCTAAGCTTATCGGCATTAGCAAATTGAGAAATCGAATAGATCCCCGGCCGTTG
GATAGGAGCACTGCCGTTACCGTGCTTAGAATTGATGAAATTGGA
Right flanking sequence: Indices 278953 -- 279452
GTGGTATACAACTACCCCTATCCCTATTGTTTTGATACATGGCGTATTGGCTTTTCGTTTTTCTA
GCTAAAGATCCATCTTTCCTGGATTAGTGATTACTTCAATCCATACCCCTATGGAATAACAAAAA
GCAAGGGCAGAGGGACCTGGATCCGGAACCATACAATAATTCGTAGGAACCCACACCGGATAGAG
GGCCGTCCCTTCCTCTTAAGAGGTGTAATTCTGTTTGGGGATGACATTAGATAATCCGAATCGTA
GTCCTCGCGGGAATGGTCGCAAAATGCGAAGGAGTTTTGTTGTCGAAGCTGGGGATCTAGATAGG
TACCGATCTCGGTGGGGATTTTCCTATTTTTTCTATGGAATTTGTTTCATTCCTTTCATGCACAG
ATGAACCTTCTGAGCTTTGGAAGTACCTTTGCCCTGGAGGATTGTCCCGTGATTGAGGGATTTCT
CTACAACTATTGCGATTAAAGACATATGCAAATCCGAAACAGGGA
Found at i:278963 original size:35 final size:35
Alignment explanation
Indices: 278889--278963 Score: 107
Period size: 35 Copynumber: 2.1 Consensus size: 35
278879 TTGGATTTCT
** *
278889 TACAAAACCCAGGATCTTCCTATTCGTAGTTTTCT
1 TACAAAACCCAGGATCTTCCTATTCGTAGTGGTCA
278924 TACAAAACCCAGGATCTTCCTATTCGTAGGTGGT-A
1 TACAAAACCCAGGATCTTCCTATTCGTA-GTGGTCA
278959 TACAA
1 TACAA
278964 CTACCCCTAT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
35 33 0.92
36 3 0.08
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (35 bp):
TACAAAACCCAGGATCTTCCTATTCGTAGTGGTCA
Left flanking sequence: Indices 278389 -- 278888
TTGGAATTCCATAGAGGAATCCCCAAGCAAAGGCCAGGACGCTAACGCTAACGCTATTGATATTC
CTAGCGCTTGTTTTCGTAGGATGCCGAGGACTCTTGCTTGAATACAACTAGAGAATTCTCAAAAG
AATACGACTAGCTCTTTACCGCGGGGATGCGTTGAGAGGAATCAATTGTTTAACCCGGTGACCGG
ATAGGAGCCGTGACTGTGTGGGTAGCATTATCAAAAGAAGGAAATTCGCAGCGCTCTAAATTTCT
CTATTTTGATTCTTTTTTTAGGGATTGCGCCGTTACTGTACCTGCTTTCGCTATTGCTGTTCCGC
TTTGCCGTTATCCGTCCCTTTGTTAGCATAATAGGAGGGTGCCTTTTTAGCGCAAGACGATGAAA
TAACAACCTAAGCTTATCGGCATTAGCAAATTGAGAAATCGAATAGATCCCCGGCCGTTGGATAG
GAGCACTGCCGTTACCGTGCTTAGAATTGATGAAATTGGATTTCT
Right flanking sequence: Indices 278964 -- 279463
CTACCCCTATCCCTATTGTTTTGATACATGGCGTATTGGCTTTTCGTTTTTCTAGCTAAAGATCC
ATCTTTCCTGGATTAGTGATTACTTCAATCCATACCCCTATGGAATAACAAAAAGCAAGGGCAGA
GGGACCTGGATCCGGAACCATACAATAATTCGTAGGAACCCACACCGGATAGAGGGCCGTCCCTT
CCTCTTAAGAGGTGTAATTCTGTTTGGGGATGACATTAGATAATCCGAATCGTAGTCCTCGCGGG
AATGGTCGCAAAATGCGAAGGAGTTTTGTTGTCGAAGCTGGGGATCTAGATAGGTACCGATCTCG
GTGGGGATTTTCCTATTTTTTCTATGGAATTTGTTTCATTCCTTTCATGCACAGATGAACCTTCT
GAGCTTTGGAAGTACCTTTGCCCTGGAGGATTGTCCCGTGATTGAGGGATTTCTCTACAACTATT
GCGATTAAAGACATATGCAAATCCGAAACAGGGAAGTACGAAACT
Found at i:314558 original size:18 final size:18
Alignment explanation
Indices: 314528--314567 Score: 64
Period size: 18 Copynumber: 2.3 Consensus size: 18
314518 AATTGATTCT
314528 GGAC-CCCCACCTGCTCA
1 GGACGCCCCACCTGCTCA
*
314545 GGACGCCCCGCCTGCTCA
1 GGACGCCCCACCTGCTCA
314563 GGACG
1 GGACG
314568 ATCCCATTAC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
17 4 0.19
18 17 0.81
ACGTcount: A:0.15, C:0.47, G:0.28, T:0.10
Consensus pattern (18 bp):
GGACGCCCCACCTGCTCA
Left flanking sequence: Indices 314028 -- 314527
GAAAAAACTCTATCTCGCCTGTGGCCAAAAGTAGTGAAAATGGTATTTAGCTTAGTCAATATACA
ACACAACTGCTGATTCTTCGCGAGATGAAAACCCTTTGTCCTCCGTCTGCAGGGGCAATTCCTGA
GAAAAGTGCTACTAGCCCTTGTTTTGGTCATGTCCACAGGCCTTTCCATTCGTCTTTATTCGTCT
TTCTTCCGGCAATCTATGCATAATTCTACTTCTTGAACCACCGAATCCGCTTTTGAAAATGGATA
ACTAGCTCCATTCTGCGTCAAGTACTAAGGATGGGCCCAAAGCACACTTTTGAAAGGCATCGGTC
ACCTTAAAAACCCCAAAAGTAGGAAGTCTAGCGTGCTTCTTTAGTGCTGCTCTTCGATCAGATGC
TTTCTCATTGAACGAGGCATATTAAAGTGAAAGAAGTTCCAGGTCGAGTCCCGAGAAGGTGATAG
TTGATTTTGATCATGAAGTTGGCACTGGACTTTGGAATTGATTCT
Right flanking sequence: Indices 314568 -- 315067
ATCCCATTACGGATTTTCTGGAGGGGGACACGCTTGACCCAGCGCAAAAACGGGAATTCAGAAAT
ATTCTGAATTTCTTGAAGACCAAAAGCAGAACGAACCTTCAAAATGAGCGAATCGTAATAAAAAG
ATGTTGGGGGGGCGAGGGTAGTAGTTACGAATCCAGGGCAATCAACCACTATCTAAAAACCCAGG
TTGGACAACTGCGTGCTGGGGGATTAGCAGGGGATTTTGTCGTAAAGGAATTACGGAAATGGAAA
AGGGACTTCAAAGCTCAGAAGAGACGGTCCCACTTCTATCAGGGCCTTCTCGGGGTCTTGAGCAA
TGTTAATTTGCATTGATTGCAAACAGGGTGCGGGATTCTCTGACGCAAACAAAGAAATGGTCCCG
GAGAAAGGAATCAGTCTCTTCAGTCCGGCGCATGCCTCAAATTCATTTTTCCTTTGAATTACTCA
TTTTTTTGAATTTCGCACCGGAAACTTTTCTAGGAGAAGTTCGAA
Found at i:328194 original size:15 final size:15
Alignment explanation
Indices: 328174--328203 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
328164 CTAGATAGGT
328174 CTAATAGATAGACGG
1 CTAATAGATAGACGG
328189 CTAATAGATAGACGG
1 CTAATAGATAGACGG
328204 GGGGCCCACT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.20
Consensus pattern (15 bp):
CTAATAGATAGACGG
Left flanking sequence: Indices 327674 -- 328173
GAACTTCGCCCAAAGCAAAGAAATGGTTTCGGTAATGGCGCATCTTCACTTCACAGTCTTTCTCG
AGCCTCATCAGCCCAACAAGCAAGCTTTTTTATTGCTACGCGCCTCCGCCTCTCTATATAATGAT
AATGGGAAGAATCTTTTGAACGAGAATCATCTAGTTATATCAATTACTTATATAGTTAGTTAGAA
GACAATCTCCCCTTTATTGCTTTTGCATAGCATTGAGCATTATATATGGTTAGCTGCGGATCCAG
TGGATAATGCGAGACTACAACGTATAGTGTTACCGACGATGTTTCGCTTTCGTCTTCGGTGCCTG
GCGTGGTGCTATCATCACATTGATCTACCCGCCCTTCTATTCCCTTCCCTAGCTTTCGTGTTTGA
GTAGTCGCGCCAGATTTCGATTCGGATGCAAACTTAGCACAATGCCCGGTAAGCTAAACACTCGA
TTCTACATCTCCGGGAATGCAACGAACTTCTACTTCTAGATAGGT
Right flanking sequence: Indices 328204 -- 328703
GGGGCCCACTAGTCCTGTATTGCGGTAGTTCAATACATACTGACAACGAGAGAACGAACCCAGTA
CCTATAGTACAACAAACACCACCATTACTTGCGTCACTAAATTGAAGCATAGAAAGAGGTGGACC
GCGCCTTGGATAATTGGTCGGATACAGCCGTAGACCGCAGAACTCGATCGGACACAAAGGGTACG
GTACAGAACTCCTCAAGACACAGTAGTCAACTGCTTCACTCCTACGCATTATCCTTTCTTTGAAA
GGCAAGATTAGGGAGCCAATTGAGTGAACAGACGAAGTAGCTTGCTTTGTACTACCGACATCTTA
ATACGATATTCTTTGCTACCTTTTCCAATGACAAGCCAGACTTCAGAACTGATTGGACACCAGAG
TCGATAGCTTACTTGGGACTACCGAAACTACCAAAGAGCAGCTCTCATTTTTCTAAAGAGGAGGT
GGATTTAAGTGATAGTTAAAAAGAGAGACCAACAGAAGCCCTATC
Found at i:371078 original size:13 final size:13
Alignment explanation
Indices: 371060--371084 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
371050 GGACCGCCCA
371060 CATTCATTCATTT
1 CATTCATTCATTT
371073 CATTCATTCATT
1 CATTCATTCATT
371085 GTTCTGTTGT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (13 bp):
CATTCATTCATTT
Left flanking sequence: Indices 370560 -- 371059
GCGGTTCGACTCTTGCTTGAGTTTGATAGGTGAGATATTTATTTAAGGAGGTACGTTCTATTTCT
TTTCCTTTGTTTTATTCTGGCTGGATGGTGTACTAGCTTGGTTTGGCTGGCACTATTGGGTATCG
TGGGCGTCTCATCCCTTGGAGGTTAGGGTATTGAAAACACATTGAATAGAGATCCGAATCGAATA
CAAAAGATCGGAAATGTCCGTTCGTTCTTTTCCACCTGATGACGAAGTGCCCGGTCTCAAATGTA
AGTGCTTTCTGGCTAATATAGATAGCCGCCTAAAAAGCACACAGGAAAATCAAAGAAATGGATAT
TTAGAGCCACTTTAGAGCTCTGGCACCACTCCGTTCGACCTATCAGCTCCCCAATGCTTAACCGG
ACGGACTGATTCTAGAGTTCTGTTTTAGTAGAAACTTGATTGATTCGTTCCTGTATAAACAGCTA
AAGGAAAGGCTTCTGATCACACACTTGTCGTCTGGGGACCGCCCA
Right flanking sequence: Indices 371085 -- 371584
GTTCTGTTGTGGATTCGAACCACTAGCACAAATTTGATTTCGAGTCAAAGGGCGCTTTTTTAGGA
TTTCCAGTCCTTTTACCTTTCAGAACCTCTCTTTCTAAGTTATGTTTTTTTTATTGTTGTCAATT
TCCATTCGTTTAGTACGAGATCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTT
CTGTTCAAAAACCTCGTACGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCAGTTCTTCC
ATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGGTTGACCCAGC
CCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAA
CCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAACAACCGAACC
CTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAG
Found at i:374935 original size:70 final size:70
Alignment explanation
Indices: 374822--374961 Score: 280
Period size: 70 Copynumber: 2.0 Consensus size: 70
374812 AAGCAACGGA
374822 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
1 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
374887 ATTTT
66 ATTTT
374892 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
1 TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
374957 ATTTT
66 ATTTT
374962 CTGAAGTGAT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
70 70 1.00
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.37
Consensus pattern (70 bp):
TTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCGTTTTCTTGCTTGATTTTTATACG
ATTTT
Left flanking sequence: Indices 374322 -- 374821
TTGTACAACTCCGTAGGGCGCGCTACGGCAACTTTTCTAACTACGCTTGCTGCTTGCTGGTTTTT
CCATCATCCAATCCACAACAAATCGAATGAAACCGCTTCGGATTTCTTTTGATGAAAACCCTTGT
TCCGCTCTCGCTCGCCGCTACTAACGGGGTCTCGGTTGATTTTCCTTCCTTTAGCTACTCAGATG
TTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTT
CCCGATCGGAGATCCATGGATCACAGAAAAATCTCTCCCCATGGCCTTTCGCCTCTGAAAGCGTC
CTTCCTTCTCAATGCCCGGGCATCCATCCAATGCATGATTTTCGATAGCGTCGAACATGAGCGGA
CACCCACACAATCTCGATTTGACACAGCAACACTTTCCACCTCTCTTCCTTCCCTTGGATCAGAT
AGGAAATCCTCACTTTTCCAAGACAGAAGAGAAGCAAGCAACGGA
Right flanking sequence: Indices 374962 -- 375461
CTGAAGTGATCTGTCCAACTAAGTAGAAAAGGACACTAGAGTGTGGCTACACGTGGTATAGGGCT
GCTCGTCCCGCCTGGTGTTGAGGGAGCTAAAGTGGAACTCTCACATACATGTTCCTTAAGTTTTT
AGCTCGCTAAATGATACAGTCCTCGCTGATGGATCGGCAAGTACTCCACGGTCAGCGGCTATCAG
CTAACGTTATGGGCCGTTAGTGGTGGTTCATTGCCTATAGTGTTGTAATCCGGAATCCAAGTTTT
GTGATAACCGTGTTGTTTACTTTCAGTGTTGTTTATTGTTCACAGCTGGATTGAGCTCAGTTGAG
AGTGTCATGCTCTGTCAATATCTGTTGCAGGAGTTGTCATTCTCTGTTACTAGAGTTGTCAATCT
CAGATGCAGGAGTTGTCAGTTGCAGCCATTCTCGCTGTGTCAAGCTTGTGACTTGCGTTGTATCA
GGTTGGTAACAGCTTGTATCTCGATAGGACTGAATGTAGCCAGGA
Found at i:375332 original size:22 final size:22
Alignment explanation
Indices: 375299--375369 Score: 81
Period size: 22 Copynumber: 3.2 Consensus size: 22
375289 TGTCATGCTC
*
375299 TGTCAATATCTGTTGCAGGAGT
1 TGTCAATCTCTGTTGCAGGAGT
* *
375321 TGTCATTCTCTGTTACTA-GAGT
1 TGTCAATCTCTGTTGC-AGGAGT
* *
375343 TGTCAATCTCAGATGCAGGAGT
1 TGTCAATCTCTGTTGCAGGAGT
375365 TGTCA
1 TGTCA
375370 GTTGCAGCCA
Statistics
Matches: 40, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
21 1 0.03
22 38 0.95
23 1 0.03
ACGTcount: A:0.23, C:0.17, G:0.24, T:0.37
Consensus pattern (22 bp):
TGTCAATCTCTGTTGCAGGAGT
Left flanking sequence: Indices 374799 -- 375298
ACAGAAGAGAAGCAAGCAACGGATTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGCATCCG
TTTTCTTGCTTGATTTTTATACGATTTTTTGAGCAACTAGCGCGAAAGCCGTTGCGCGTTAGCGC
ATCCGTTTTCTTGCTTGATTTTTATACGATTTTCTGAAGTGATCTGTCCAACTAAGTAGAAAAGG
ACACTAGAGTGTGGCTACACGTGGTATAGGGCTGCTCGTCCCGCCTGGTGTTGAGGGAGCTAAAG
TGGAACTCTCACATACATGTTCCTTAAGTTTTTAGCTCGCTAAATGATACAGTCCTCGCTGATGG
ATCGGCAAGTACTCCACGGTCAGCGGCTATCAGCTAACGTTATGGGCCGTTAGTGGTGGTTCATT
GCCTATAGTGTTGTAATCCGGAATCCAAGTTTTGTGATAACCGTGTTGTTTACTTTCAGTGTTGT
TTATTGTTCACAGCTGGATTGAGCTCAGTTGAGAGTGTCATGCTC
Right flanking sequence: Indices 375370 -- 375869
GTTGCAGCCATTCTCGCTGTGTCAAGCTTGTGACTTGCGTTGTATCAGGTTGGTAACAGCTTGTA
TCTCGATAGGACTGAATGTAGCCAGGAGTTGTCTTAGGTTAGTCTAATGTGCCAAAACGTTAGTC
AAACCACCTAGGTTGTGTTTGTTCTGGAGAGTTCAGCTAGTCCGAGTGATCTGGGTTATCCTACG
TTTTATCCCTGTTTCGATCTTTTTTTCGACTATAGGGGTTTTGTAGCAGCCCAGCAGCATCCGTG
TGACAGAGAGTCATATTAAGGATATAATAATGCTTTCCCCCCCTTGCAGAAAAAGTAGGAAAATG
GACTGAAATTGTTGGATAAGTGGATTTGCAGTATCTCAACAATCAGAACAGCGAATATTCCATCA
TCCAAACTAAGCTTCCTCAGATCCTAACCCATTGGTCATTATCGAGCCTCGTGACTCCGGCTGTG
TTGATATCTTCGTATTACCTGTTATCATTCTATCTATCTGGTTAT
Found at i:409823 original size:11 final size:11
Alignment explanation
Indices: 409807--409834 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
409797 GGGAATAATC
409807 TCTTTCTTATT
1 TCTTTCTTATT
409818 TCTTTCTTATT
1 TCTTTCTTATT
409829 TCTTTC
1 TCTTTC
409835 CCATGACGAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.07, C:0.21, G:0.00, T:0.71
Consensus pattern (11 bp):
TCTTTCTTATT
Left flanking sequence: Indices 409307 -- 409806
GGGGGAGTTAATTAAGGTCGAGGGAGCAGGAAAGAGTTTGTTATTCGCTATTGGCTTAGTACGGC
CTATACATAATAGGGCCATGACGGTTTTGGCAAGGCCTTGAACTTCATATATCCCTTTTTTACTC
AATCCAGAATACCGAGAAAGTCAGATTGAATCATTTTGTCGACCTTTCCTTTGGATTTATTATCA
TAGGTAGTGTTCGAGATCGCCTCTGTGCGGTGAACGCTCGAATGTAGCTAACATCAGTTTTGTCC
TCGCGTGGTTGAAGGAGATGCTGCTGCTGGATGGAATGCTTCCGGGGCGCCATGATCCTTCTATC
AGGAATAGAATAATCGAGGGCACTGACTGACTGCATCAATCATCGCTCAGTGAGCTATTAATTGC
CGCCAATAGCGCTTCGCTTGCATGCAAGGCGGCTAATAAAAGCGCCAGGTAGACGCGCGGAGATG
CATTTTGAGTACTGGTGGTACTGGACAAGCTCTAGGGGAATAATC
Right flanking sequence: Indices 409835 -- 410334
CCATGACGACTAGGAACGGGCAAATCAAGAATTTCACTTCGAATTCCGGACCTCAACATCCTGCT
GCTCATGGTGTTTCACGATCAGTATTGGAAATGAACGGAGAAGTGGTGGAACGTGCGGAACCACA
TATTGGATCACTCCAGTGCGGCACGAAGCCGCTGACGCTGAGTAGGCTCCTATGCCGCTAGCACG
GTGGAGGTTCCGTAGCGCGTCATGAGCACCGGGCAAAGGGACGGTTGAGCAACTCAAGCGAACCG
CCCTACCTGACTTTGGATAAAGATAGAAGGGAGAAGGTTGTGAAGGTGGCCTCGTTATCCACACA
TCTGGTCGGAGGACCGACCTGGGTTTTCACGAGCGTAGGCGGGTCCTGGAGTGCCCGTCAAGGGC
GCTAGCGCATACCCCGGGGTGATCATCACCACCTGCACCTCACATCTCGGCACAGTGGAACGTGT
AACCCGCCTGCTGTCCAAGTCAACCACTGAATTTCCTGTAATTCA
Found at i:421502 original size:12 final size:12
Alignment explanation
Indices: 421485--421510 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
421475 TCTTTCATCT
421485 TATTGATTTTGA
1 TATTGATTTTGA
421497 TATTGATTTTGA
1 TATTGATTTTGA
421509 TA
1 TA
421511 CATTCCAACG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.00, G:0.15, T:0.58
Consensus pattern (12 bp):
TATTGATTTTGA
Left flanking sequence: Indices 420985 -- 421484
CCCCTTTAAGATCAAACAATTCCATCGAATTGAGTATGACTGTATGTGTGATAGCATCTACTATA
CCAGGAATATCAATGAACCCCATTCTTGCAATTGCTCAGGATACCCTCTTTTAGCTGCTAGGTCT
ATTTCTTAGTTCAAGATCCCTCTTACTAACTGGAATAAAAGAATTAGTAGATCTGTTCCGCCCAA
AATGGGAATGGGCGCTAGGGTTATGAACTTAGAATCATGGAATCGACTCGATCATCAGATTCTAA
GTTCATTCCATACCGAACCAGACCGTGCACATTCTTATTATGAGAAGGGGTCATTCGAGCCTATG
GAAATAGGATACTCTGTTTACATAGAAATCCCTACGTCCTTACATTCTATTTAGGATTAGGAATA
GGTGTAATCAGACCTGCTTTTGACATATCTATCCTATTCTTATTTGGGTACCATATGCACCTCTT
TGGGCTTCTATTGAATCGAGAAATTGGATTGTACATCTTTCATCT
Right flanking sequence: Indices 421511 -- 422010
CATTCCAACGGATAATGCAAATCGAAGCTATTTGATGTCTGACTCAGGCAAAAAGAAAAGAAAGA
AGAGAACGAAAGGAGAACAGAACTTTGTATTTGGTAACTCTCCTGTAGTTATGTTTAACCTTGAA
TGCAATTTATAGATTCGACAGCAATAGTCCCTCGGACTCGAAAAGTAATAACGAAAATGGCTAAT
CCAATAGCAGATTCCGCAGCTGCCACTGTTGGAACTAATGAAGCAAATGATTGACCCATCATATC
ATCCAAAGAAACGGAAAATACCAAAAAGTTCAAATTGACAGCTAATAACATTGATTCAATTGGCA
TTGACATAATAAGAATATTTCGTCTATTAAGGAGGATTCCCCGAATACCTAAAATAGAGATGATC
ATAGAAAAAGTGAAATATTTTATAGGATCCGTTTCGGAAACATGGAATGTCAGAGAAATTCAAAT
TATGTGAGGCTTAGAAAGAAGTCCTGCGTAGAGTCCAGGGAGAGC
Found at i:446935 original size:17 final size:17
Alignment explanation
Indices: 446913--446946 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
446903 TCGGACTTAC
446913 TCCATTTGCTTCTAGGG
1 TCCATTTGCTTCTAGGG
446930 TCCATTTGCTTCTAGGG
1 TCCATTTGCTTCTAGGG
446947 ATAGATAGGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.24, T:0.41
Consensus pattern (17 bp):
TCCATTTGCTTCTAGGG
Left flanking sequence: Indices 446413 -- 446912
TCTAAGCTAGCTAAACGCCCGAAACATAATAAGCTAAGCCTCCGTCGATTTAGCCAAAGCAGGCC
TGGAGAAAATAATGGGAGTCGGTGTCCCTTAAACGCCTTGTTTCCTCTTCTTTACGGTGGCTTCT
TCTTAAATGAAAGAAGATCTCTGCTGCGCTTATGCCTTCAAACCCGAAAACAGTGGTTATTACGA
CACCAGGTGAAATAGCTGCTTTTTCTTCTCTTCCTCCCCTCGACCTATTGAAGTTGCGCTCACCC
GCAGCCCTAAGCCCTACAGTTCCTTCGCTTACCGCCTAATCTTAATCTATTGCCCTGCCTCCAAG
AGAAGAAATGGCACCAACCGATACAATGGCAGCTAGTTCCAGGGAAGCTGCTTCAATGGAAGTTG
GATTGCCTAGTTGCTTTTGAGTTCGATTTGAACTAGTTTCCAAGCTTTTTTTTCATCCATGCCTA
TAAGTATAATTATCTTTTCCAATCCGAGTGTTCCATCGGACTTAC
Right flanking sequence: Indices 446947 -- 447446
ATAGATAGGGCTGGAGTCGTCAGTGCTAGAATGAAATGTGAATGAGAGCATAGATTGATTGTCTC
ACTGCATGTACGTATAGTAACCGGTTAATAATACTAAGGGTCCCTAATACTAATCTCGACATGAG
AGGAACGTGTCCTCTCGGCCTTGATATATACTAACAAATATGGTTTTTTCACTCAGACATGAGAG
GTGAGATCGATTATATGATGGAGACAGATGGAGGAGCAGAAAGTGAGAGATTGTGGCGTGAAGCA
CATGTAAGGTGTACAACTCTTGAGACGGATGCATCGAGGTGCCGGCCTGTGAGAACGCTCGTCAT
AGCGTTGCGCCATAATTTTGTGATGGGTCTTTCGTTTTAAAAATAGGAGTTTTTCGGGTCTAGTT
TACCGGTCCGTCAATAAATGCGTATGAAAAGTGAAATAGTTGATGTGATGGATGTGCCCGGTATC
GATCAATGAAACATCGGCTCGACGCAGGATTTCAATAGAACGAAA
Found at i:447916 original size:18 final size:18
Alignment explanation
Indices: 447893--447936 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
447883 TCACTTCTCT
*
447893 CAAATGCAGATGTTTTAC
1 CAAATGCAAATGTTTTAC
*
447911 CAAATGCAAATGTTTTAT
1 CAAATGCAAATGTTTTAC
447929 CAAATGCA
1 CAAATGCA
447937 TTTGAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.32
Consensus pattern (18 bp):
CAAATGCAAATGTTTTAC
Left flanking sequence: Indices 447393 -- 447892
CCCGGTATCGATCAATGAAACATCGGCTCGACGCAGGATTTCAATAGAACGAAAAACATCGTCAG
TAGTAGAGGGATAGGTACTTATTCCCGGCCAGCGGTATCATTGCTGCTCCCCGCCTAATGCGGAT
CATTGTGCAATGCTTATGTGAAATCTCAATCCAAAACTTATTCGTTTCGTTGGAAAAACCGACAC
CGACGTCAAGATCAGTCTCCTTTCCTTTCTCTTTAGTTTGGGAGCAGAGCTTAAAAAGATGGGGG
GTCACGATGGATCCTTTTTTTATCCCTGATTCCATGGACGGAATGATTGTGGAATTTAACCCTTC
GTCGTCATACCCAAACTCGGTCAATGGGCCGGCTTTTAGCGTAGAAAGTGTGAGTTCGAACTACA
TGGAGGTGGAGGAATCAATAAATTCCCCTCCTCCCCCTAATCCAAACCCTTATTCTCAGATTCCG
GATTTAGTCGCCGCAAATGCAAATATGGATTACTTTCACTTCTCT
Right flanking sequence: Indices 447937 -- 448436
TTTGAATTATTTTAGCAGCCAGCCGCTTTTGCCTATGGTACCTATGTATGTTCATTTTTTTATGT
CTTTTTATATGCGGTTTTGGTATTTTCCCTTCTAAGCAAACTCTTTTGCGCCATTTGATCTTTAA
TTGAACTATTTCAGGCTCCGTATTGAATTGAAAAACTCTTTCAGGCTCCGTATTGTATTTATAAA
CTCTTTAAGGCTCCGTATTGTATTTATAAACTCTTTCAGGCTCCGTATTTCAAACTCGAATTGGA
TTTTGTGTCGGCTGGCCGGCAGGACCGCCAGCCCGCAGATGTAGGGAGGTCTCCTCTTGAACTGA
GAAATCAAAGTCGCGATCTGATAGGTATCTATCCGGACCATGCATCTGGAAAGCGCCGGTTCGAT
TCCGGCTCGTGACATGAAGAAGAAGTCCCAAACAGGGATCAGATGAGTTTGCACAGCGTTACTTT
GTTGACGGAAAATCTAATTGTTCTTCCGGTTCAATGAAGACTATG
Found at i:448111 original size:30 final size:30
Alignment explanation
Indices: 448070--448180 Score: 177
Period size: 30 Copynumber: 3.7 Consensus size: 30
448060 TCTTTAATTG
* * * *
448070 AACTATTTCAGGCTCCGTATTGAATTGAAA
1 AACTCTTTCAGGCTCCGTATTGTATTTATA
448100 AACTCTTTCAGGCTCCGTATTGTATTTATA
1 AACTCTTTCAGGCTCCGTATTGTATTTATA
*
448130 AACTCTTTAAGGCTCCGTATTGTATTTATA
1 AACTCTTTCAGGCTCCGTATTGTATTTATA
448160 AACTCTTTCAGGCTCCGTATT
1 AACTCTTTCAGGCTCCGTATT
448181 TCAAACTCGA
Statistics
Matches: 75, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 75 1.00
ACGTcount: A:0.26, C:0.20, G:0.14, T:0.40
Consensus pattern (30 bp):
AACTCTTTCAGGCTCCGTATTGTATTTATA
Left flanking sequence: Indices 447570 -- 448069
CGTTGGAAAAACCGACACCGACGTCAAGATCAGTCTCCTTTCCTTTCTCTTTAGTTTGGGAGCAG
AGCTTAAAAAGATGGGGGGTCACGATGGATCCTTTTTTTATCCCTGATTCCATGGACGGAATGAT
TGTGGAATTTAACCCTTCGTCGTCATACCCAAACTCGGTCAATGGGCCGGCTTTTAGCGTAGAAA
GTGTGAGTTCGAACTACATGGAGGTGGAGGAATCAATAAATTCCCCTCCTCCCCCTAATCCAAAC
CCTTATTCTCAGATTCCGGATTTAGTCGCCGCAAATGCAAATATGGATTACTTTCACTTCTCTCA
AATGCAGATGTTTTACCAAATGCAAATGTTTTATCAAATGCATTTGAATTATTTTAGCAGCCAGC
CGCTTTTGCCTATGGTACCTATGTATGTTCATTTTTTTATGTCTTTTTATATGCGGTTTTGGTAT
TTTCCCTTCTAAGCAAACTCTTTTGCGCCATTTGATCTTTAATTG
Right flanking sequence: Indices 448181 -- 448680
TCAAACTCGAATTGGATTTTGTGTCGGCTGGCCGGCAGGACCGCCAGCCCGCAGATGTAGGGAGG
TCTCCTCTTGAACTGAGAAATCAAAGTCGCGATCTGATAGGTATCTATCCGGACCATGCATCTGG
AAAGCGCCGGTTCGATTCCGGCTCGTGACATGAAGAAGAAGTCCCAAACAGGGATCAGATGAGTT
TGCACAGCGTTACTTTGTTGACGGAAAATCTAATTGTTCTTCCGGTTCAATGAAGACTATGCTTA
CTTTCCTTTCTCTTACCGGTCTGTGTTCTATCATGGACCTGTATTCCGTTCCTCGAATCGAGACT
TTCTTTTGGTATGATTTTGATACGAGTTTTCTATCAAAACTCTATGCCATCAATCACTATCCCCG
GGGATAGAATCCAGCTCCCGGCGTACCTGATAACTACGCTCATATACGTCAATTCATGGAAGATG
CTCAGGGGAACGAATCCATATAGGAAACCCCTCTAGGGGAAGGGA
Done.