123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_036024
Parameters: 2 7 7 80 10 50 500
Length:  452526

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8591--8625	17	2.1	17	100	0	70	28	22	11	37	1.89
9939--9964	6	4.3	6	100	0	52	15	19	0	65	1.27
20124--20160	18	2.1	18	89	0	56	24	13	24	37	1.91
35089--35123	18	1.9	18	100	0	70	28	25	22	22	1.99
73016--73056	19	2.2	19	90	0	64	29	14	43	12	1.82
81027--81069	21	2.0	21	90	0	68	27	25	18	27	1.98
83466--83497	16	2.0	16	100	0	64	56	0	31	12	1.37
86000--86036	18	2.1	18	89	0	56	24	13	24	37	1.91
103434--103468	17	2.1	17	88	0	52	45	14	25	14	1.82
118792--118824	16	2.1	16	100	0	66	18	30	12	39	1.87
121533--121570	19	2.0	19	100	0	76	36	15	21	26	1.93
122983--123044	31	2.0	31	100	0	124	32	29	22	16	1.95
125342--125387	24	1.9	24	86	0	65	15	32	23	28	1.95
126375--126416	21	2.0	22	86	13	61	42	19	14	23	1.87
152496--152557	21	3.0	21	78	0	61	12	29	24	33	1.92
171188--171327	70	2.0	70	100	0	280	18	21	22	37	1.94
171665--171735	22	3.2	22	78	7	81	22	16	23	36	1.94
191688--191730	21	2.0	21	95	0	77	34	23	4	37	1.76
215343--215367	12	2.1	12	100	0	50	44	8	16	32	1.76
232960--233052	12	7.8	12	70	17	68	34	17	20	27	1.95
232960--233055	36	2.7	36	100	0	192	34	17	19	28	1.95
245176--245233	29	2.0	29	93	6	100	17	22	15	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
253317--253350	16	2.1	16	94	0	59	47	14	11	26	1.79
259322--259346	13	1.9	13	100	0	50	24	24	0	52	1.48
263084--263223	70	2.0	70	100	0	280	18	21	22	37	1.94
263561--263631	22	3.2	22	78	7	81	22	16	23	36	1.94
274101--274180	39	2.1	39	90	0	124	21	20	21	37	1.94
278884--278952	35	2.0	35	100	0	138	26	26	11	36	1.90
278889--278963	35	2.1	35	87	4	107	29	24	14	32	1.95
314528--314567	18	2.3	18	91	4	64	15	47	27	10	1.77
328174--328203	15	2.0	15	100	0	60	40	13	26	20	1.89
371060--371084	13	1.9	13	100	0	50	24	24	0	52	1.48
374822--374961	70	2.0	70	100	0	280	18	21	22	37	1.94
375299--375369	22	3.2	22	78	7	81	22	16	23	36	1.94
409807--409834	11	2.5	11	100	0	56	7	21	0	71	1.09
421485--421510	12	2.2	12	100	0	52	26	0	15	57	1.38
446913--446946	17	2.0	17	100	0	68	11	23	23	41	1.87
447893--447936	18	2.4	18	92	0	70	38	15	13	31	1.87
448070--448180	30	3.7	30	92	0	177	26	19	14	39	1.90

Tables:   1

The End!