123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_008362
Parameters: 2 7 7 80 10 50 500
Length:  704100

Tables:   1   2   

This is table  1  of  2  ( 133 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3056--3094	5	7.8	5	100	0	78	20	38	0	41	1.53
5395--5435	5	8.2	5	100	0	82	60	0	19	19	1.36
6726--6766	21	2.0	21	100	0	82	26	29	14	29	1.95
7618--7646	15	1.9	15	100	0	58	27	34	17	20	1.95
12594--12623	6	5.0	6	100	0	60	16	16	16	50	1.79
14942--15157	6	36.0	6	100	0	432	66	0	16	16	1.25
18860--18918	5	12.0	5	98	1	111	61	0	20	18	1.35
22976--23011	18	2.0	18	100	0	72	38	0	22	38	1.54
28563--28616	21	2.6	21	75	0	63	37	22	27	12	1.91
32237--32307	5	14.2	5	98	0	106	40	0	5	53	1.24
32542--32592	5	10.2	5	100	0	102	39	0	39	21	1.54
39043--39210	6	28.0	6	100	0	336	16	16	0	66	1.25
49936--50031	5	19.4	5	95	2	158	57	1	18	22	1.47
52942--53011	5	14.0	5	96	0	113	41	21	0	37	1.53
64966--64997	5	6.4	5	100	0	64	59	21	0	18	1.38
65865--65893	7	4.1	7	100	0	58	13	55	0	31	1.39
72825--72861	6	6.2	6	100	0	74	51	0	32	16	1.45
76987--77016	6	5.0	6	95	0	51	33	0	30	36	1.58
78271--78295	6	4.2	6	100	0	50	16	0	32	52	1.44
79007--79058	6	8.7	6	100	0	104	50	17	0	32	1.47
88565--88653	6	14.8	6	100	0	178	32	16	0	50	1.46
104340--104591	6	42.0	6	95	0	450	47	17	0	34	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113270--113472	6	33.8	6	100	0	406	83	0	0	16	0.65
113272--113468	1	197.0	1	67	0	106	83	0	0	16	0.64
130092--130124	11	2.8	12	90	9	50	66	15	9	9	1.43
131611--131679	5	13.8	5	100	0	138	40	18	0	40	1.51
135087--135133	19	2.5	19	77	19	53	27	25	10	36	1.89
138615--138649	5	7.0	5	100	0	70	20	40	0	40	1.52
144438--144517	39	2.1	39	100	0	160	32	20	11	36	1.88
148434--148493	5	12.2	5	96	3	113	40	0	20	40	1.52
157393--157419	5	5.4	5	100	0	54	40	0	37	22	1.54
164204--164269	6	11.0	6	100	0	132	50	0	16	33	1.46
165439--165475	5	7.4	5	100	0	74	18	18	0	62	1.34
188739--188789	5	10.2	5	97	0	93	58	0	19	21	1.39
198212--198237	5	5.2	5	100	0	52	61	19	0	19	1.35
198619--198674	25	2.2	25	84	12	71	19	14	30	35	1.91
200231--200341	5	22.2	5	100	0	222	39	19	0	40	1.52
205236--205424	5	37.8	5	98	0	351	58	0	20	21	1.40
208025--208168	6	24.0	6	99	0	252	47	2	16	33	1.61
230604--230669	5	13.2	5	100	0	132	0	19	0	80	0.72
230678--230817	6	23.3	6	97	0	262	34	0	17	48	1.47
244919--244961	21	2.0	21	86	0	59	25	25	20	27	1.99
245638--245785	6	24.7	6	100	0	296	16	33	0	49	1.47
248774--248829	27	2.1	27	96	0	103	14	19	21	44	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259877--259920	6	7.3	6	100	0	88	18	47	15	18	1.83
261316--261405	6	15.0	6	100	0	180	33	16	16	33	1.92
278849--278876	11	2.5	11	100	0	56	7	21	0	71	1.09
284210--284334	6	21.0	6	99	0	243	49	0	16	33	1.46
292710--292764	5	11.0	5	100	0	110	40	0	0	60	0.97
293602--293649	23	2.1	23	92	0	78	20	20	22	35	1.96
303695--303732	18	2.1	18	90	0	58	15	23	7	52	1.69
309097--309167	5	14.2	5	100	0	142	40	39	0	19	1.52
311409--311438	15	2.0	15	93	0	51	20	30	10	40	1.85
314021--314068	21	2.2	21	88	3	69	45	12	14	27	1.81
314029--314068	21	1.9	21	100	0	80	50	10	10	30	1.69
316951--316998	6	8.0	6	100	0	96	33	16	0	50	1.46
318911--319040	5	26.0	5	100	0	260	60	0	0	40	0.97
322720--322777	29	2.0	29	96	0	107	31	29	17	22	1.96
328945--329014	6	11.7	6	100	0	140	51	15	15	17	1.77
331034--331064	15	2.1	15	93	0	53	12	16	19	51	1.76
334947--334994	24	2.0	25	87	4	71	35	16	25	22	1.95
337209--337290	5	16.4	5	100	0	164	59	20	0	19	1.37
344805--344834	5	6.0	5	100	0	60	60	0	20	20	1.37
349586--349632	5	9.4	5	100	0	94	40	19	0	40	1.51
358656--358746	5	18.2	5	100	0	182	40	0	19	39	1.52
358785--358838	6	9.0	6	100	0	108	66	0	33	0	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362206--362280	5	15.0	5	100	0	150	40	0	40	20	1.52
365403--365462	5	12.0	5	100	0	120	20	0	20	60	1.37
372905--372957	27	2.0	27	92	0	88	13	16	18	50	1.77
375799--375861	31	2.0	31	96	0	117	30	14	20	34	1.92
378366--378395	5	6.0	5	100	0	60	60	0	20	20	1.37
392446--392510	32	2.1	32	94	2	114	35	21	18	24	1.96
397205--397249	6	7.3	6	95	5	81	33	0	17	48	1.48
401515--401542	7	4.0	7	100	0	56	28	14	14	42	1.84
411081--411212	5	26.4	5	100	0	264	40	0	19	40	1.52
418499--418590	6	15.3	6	100	0	184	33	32	0	33	1.58
418974--419135	5	32.2	5	98	1	315	60	0	19	19	1.36
422729--422835	5	21.4	5	100	0	214	40	19	0	40	1.52
423656--423715	18	3.3	18	72	4	59	26	21	15	36	1.93
424818--424849	5	6.4	5	100	0	64	59	21	0	18	1.38
438032--438061	6	5.0	6	100	0	60	50	16	16	16	1.79
439076--439110	5	7.0	5	100	0	70	60	20	20	0	1.37
445007--445056	24	2.1	24	100	0	100	30	24	42	4	1.73
448662--448690	5	5.8	5	100	0	58	41	0	17	41	1.49
456138--456217	39	2.1	39	100	0	160	32	20	11	36	1.88
460134--460193	5	12.2	5	96	3	113	40	0	20	40	1.52
469093--469119	5	5.4	5	100	0	54	40	0	37	22	1.54
475904--475969	6	11.0	6	100	0	132	50	0	16	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
477139--477175	5	7.4	5	100	0	74	18	18	0	62	1.34
500439--500489	5	10.2	5	97	0	93	58	0	19	21	1.39
509912--509937	5	5.2	5	100	0	52	61	19	0	19	1.35
510319--510374	25	2.2	25	84	12	71	19	14	30	35	1.91
511931--512041	5	22.2	5	100	0	222	39	19	0	40	1.52
516936--517124	5	37.8	5	98	0	351	58	0	20	21	1.40
519725--519868	6	24.0	6	99	0	252	47	2	16	33	1.61
542304--542369	5	13.2	5	100	0	132	0	19	0	80	0.72
542378--542517	6	23.3	6	97	0	262	34	0	17	48	1.47
556619--556661	21	2.0	21	86	0	59	25	25	20	27	1.99
557338--557485	6	24.7	6	100	0	296	16	33	0	49	1.47
572440--572491	27	1.9	27	96	0	95	28	21	11	38	1.88
573537--573582	23	2.0	23	95	0	83	36	15	4	43	1.66
576504--576538	18	1.9	18	94	0	61	42	28	2	25	1.69
586813--586838	5	5.2	5	100	0	52	23	57	0	19	1.40
587986--588060	5	15.0	5	100	0	150	60	0	20	20	1.37
592818--592857	21	1.9	21	100	0	80	30	10	10	50	1.69
595448--595477	15	2.0	15	93	0	51	40	10	30	20	1.85
597719--597789	5	14.2	5	100	0	142	19	0	39	40	1.52
598949--599001	5	10.6	5	97	0	97	39	16	1	41	1.60
605893--605930	18	2.1	18	90	0	58	26	21	31	21	1.98
609867--609988	3	40.7	3	100	0	244	32	33	0	33	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
610452--610521	5	14.0	5	100	0	140	60	0	0	40	0.97
610959--611014	6	9.3	6	100	0	112	17	33	0	48	1.48
615258--615317	29	2.0	30	93	3	104	35	25	25	15	1.94
615473--615508	6	6.0	6	100	0	72	33	0	16	50	1.46
619812--619959	6	24.8	6	99	0	289	33	16	0	49	1.47
624783--624827	5	9.0	5	100	0	90	40	0	40	20	1.52
625646--625741	6	16.2	6	97	1	176	17	17	33	31	1.94
629253--629337	6	14.3	6	97	2	163	49	32	0	17	1.47
631839--631928	6	15.0	6	100	0	180	16	0	16	66	1.25
644700--644725	5	5.2	5	100	0	52	0	19	19	61	1.35

Tables:   1   2