Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt2/NC_052879.1/NC_052879/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           386758
Total number of identified SSRs:                 53
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	45
2	5
3	3

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	total
A	-	-	-	-	-	10	2	2		2	1		1	18
C	-	-	-	-	-	2				1				3
G	-	-	-	-	-	2								2
T	-	-	-	-	-	11	6	1		3		1		22
AT	-	2												2
GA	-		1											1
TC	-	2												2
GAA	1													1
GTT	2													2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	total
A/T	-	-	-	-	-	21	8	3		5	1	1	1	40
C/G	-	-	-	-	-	4				1				5
AG/CT	-	2	1											3
AT/AT	-	2												2
AAC/GTT	2													2
AAG/CTT	1													1