123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_065061
Parameters: 2 7 7 80 10 50 500
Length:  638482

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36963--37005	21	2.0	21	82	13	52	25	37	23	13	1.92
57089--57123	18	1.9	18	88	0	52	42	17	28	11	1.83
74583--74627	21	2.0	22	87	8	65	15	33	8	42	1.78
126594--126639	22	2.1	22	88	8	67	52	0	2	45	1.13
145296--145370	38	2.0	37	94	2	132	33	22	24	20	1.97
185268--185305	20	1.9	20	94	0	67	21	39	7	31	1.82
187516--187556	21	2.0	21	85	0	55	56	4	0	39	1.21
199759--199792	16	2.1	16	88	0	50	41	14	2	41	1.61
199753--199795	22	2.0	22	85	0	59	39	13	4	41	1.66
217286--217329	22	2.0	22	86	0	61	15	13	18	52	1.75
223875--223901	14	1.9	14	100	0	54	37	3	22	37	1.72
293031--293066	18	2.0	18	94	0	63	30	33	2	33	1.72
297996--298034	20	1.9	21	89	5	62	66	2	12	17	1.35
307085--307127	18	2.4	18	81	18	54	34	25	20	18	1.96
361670--361699	7	4.1	7	91	8	51	33	13	0	53	1.40
361670--361699	15	2.0	15	100	0	60	33	13	0	53	1.40
370913--370986	19	3.8	19	74	15	71	35	8	24	32	1.85
394632--394657	12	2.2	12	100	0	52	26	0	15	57	1.38
415346--415377	14	2.3	14	94	0	55	15	31	12	40	1.85
416151--416184	15	2.3	15	89	0	50	23	0	50	26	1.50
419123--419164	22	1.9	22	95	0	75	14	21	21	42	1.88
448596--448635	18	2.2	18	86	13	55	5	25	15	55	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454699--454732	8	4.1	8	88	3	50	88	0	8	2	0.62
479814--479845	15	2.1	15	94	0	55	12	18	6	62	1.50
482840--482948	25	4.1	25	71	16	94	28	23	22	25	1.99
482899--482959	25	2.4	26	75	8	72	29	21	26	22	1.99
489993--490023	16	1.9	16	93	0	53	35	35	19	9	1.85
491479--491536	27	2.1	27	83	0	71	22	32	20	24	1.98
543244--543276	16	2.1	16	88	5	50	30	21	15	33	1.94
559447--559473	4	6.8	4	100	0	54	74	0	0	25	0.83
614171--614215	23	2.0	23	90	0	72	44	17	20	17	1.87

Tables:   1

The End!