Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_065060
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 683000
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:14210 original size:21 final size:22
Alignment explanation
Indices: 14185--14229 Score: 65
Period size: 21 Copynumber: 2.0 Consensus size: 22
14175 GCAGTGTCGA
14185 CTCTCGTATTATA-CTGACTCT
1 CTCTCGTATTATACCTGACTCT
*
14206 CTCTCGTATTCTACTCTGACTCT
1 CTCTCGTATTATAC-CTGACTCT
14229 C
1 C
14230 AGCTGAGGCT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 12 0.57
23 9 0.43
ACGTcount: A:0.16, C:0.33, G:0.09, T:0.42
Consensus pattern (22 bp):
CTCTCGTATTATACCTGACTCT
Left flanking sequence: Indices 13685 -- 14184
TATGGCAGGCCCTTACTGAGGGGTGGTATCCGCGCTAGAGGGCTTCTTCTTTCGCCGCTTCCGCT
GCTTGGTGTTCCGAGGAGTTCCGGGCTAAGTACGAAGCTCGTACTTCCCTCTTTGGAAAGGCCTT
CCTTTCACCAGGGCAATAAAGCGCCTCGCTTGCTTATGAATATTATGTTGGATTTGGAATTTAAA
CTAAAGCCTCTCACCAGCAGCTTCCTCAACCTCGTTCGTTCTCGTTCTCGGGCCTGTCTTGCCTT
CCGGGCTCTTTCTTTGCCTTGGCCCCAGCCCAGTTGTTTAAGCGTTGGTCCTGTGGTCCCTCCCT
CTCTATAAGCATAAGCGCGATAGCTAGGCTCATCATTGAGAAGGCAAAGGTGGTATGAGATTCAG
CAAAAGCAGCTTTAGAAGGGGTCAATAAATCCCGTTCTCAATTGTTCTAAGAGAGCGGCATCCCC
ATCTCTGGCTTAAGTCGTCTTCGGAATCATACTAAGCAGTGTCGA
Right flanking sequence: Indices 14230 -- 14729
AGCTGAGGCTAAGAAAGCCAAGGAGTGAGCTCTTTTTTGGTTCCATTAGGAGGGTGATGAAAACA
ATTAAAGAGTTATTAACAATAAGATTATAAATTCCCAATCTTCTGAAACAAACACTTGTTATTTG
TATAAATAAGTTTCAGGCTCCAACAGAGTGAGTTGCTGCTCGCATCGTTCTGAAAGTTAACGATT
GCACGGCGTGGGTATATTATGGAGTGCTCTATGCCGCCACCCTATCGAATCTATGTTCCCATGTC
TGAGACACTTCGAAAAGAAGAAAGCAATGATTCCCTTTTGGCATCCACCATAAGAATAACCCCCT
CAAAGCAAGGAAAGGAGTTTCACCACCTCGTCCAGCATCTCTTTTAGTTCGAGATCGATACCCAA
CAGCGAAGGCAAGGGCAAAGGACACAGAGACATAAGTAGCAGTTGCATTTTCACTTATGAATGGA
AAGGCAAGTAGCGAGGGTATAGGCACCACCACCCGTGGTAGAGAT
Found at i:20196 original size:18 final size:18
Alignment explanation
Indices: 20173--20208 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
20163 AGGGTCGGGC
20173 CTCAACCAATCTACTTAT
1 CTCAACCAATCTACTTAT
*
20191 CTCAACCGATCTACTTAT
1 CTCAACCAATCTACTTAT
20209 AAGGGGAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.33, G:0.03, T:0.33
Consensus pattern (18 bp):
CTCAACCAATCTACTTAT
Left flanking sequence: Indices 19673 -- 20172
TTCTTGTCTTGTTGCTAGCCTTCGATTGTATGGTTTCCTTATCGCTGTTGTCGAGCTCCAGCCCG
ATCCCTGTGATCTCGTACTTGGTGTTCCCCTCTTTTTCTGTTCGTCCTGGTATGGTATGTACCCT
TTCACTCCAGGGAAGGTTCCCGAGCTTGGCCGCACCAAATCCTGGAAGTGGCACCGCTCTGGCGA
TTGGCAAGACATATCCGAGGAGCGCTGCCTGAACGAAGCGTGGGCGTCAAGCATCAAGTGGAGGC
GCCGAATCGTTGCAAGAGGGGGTACTAAGCGGGATCGACCGGTCAGAAGCCAAGCTGGCCAAAAG
GCATAGGGCCAAGGCTGAGCTGGCAGGCTCATCTCACTGATTGTGTGCTTTTATTGGATAACTTC
CATCAAGGGAAAGTGCACTTTAGCTCTATTCCGTTTCCACAACGTGTTGGTTTCCCGCTCAGCCC
CCTAAACACTATGGCATCAAGGTCGGCAACCCAAAAGGGTCGGGC
Right flanking sequence: Indices 20209 -- 20708
AAGGGGAAAGCCACGAATATCGGGGAAACACCTATTATATATAATAGGTGTATCCTAGAAACACG
GGCTAGAGTAAGCGCCAAGCGCTGGCCCATTAGTGGGTTAAATTCCTGCTTGCCTTTCATTTTGA
ATTGAAAGAGTAGTCTCGAGCCGCGCTCTTCTGCCATGCGAAGGGAAGATCGGATTGAACGGCTA
GCGAACTCAACCCTTGCGGCAAGAAAACGACGAAATAGCTCATAGCCCGGGTGTGGCTCCCCTTT
CTTACTTCTCTTACTTATTATTTATGGGATCCCCCTTGGCCCCCTTTGGTCCGAAATAGCCGTAC
GCACTCCTCCATATCCCACTCTGGAGGTAGGGCCCAAGAATCCTATCTTTTTTGTTGAGTGGAAG
TAGGAATGGAGTGGCTCATGCCAGACCGGAGAGATCATACTTATCGGCTAGCTCAATCGCAAATC
GGGCATCCCCATGATATATTCAGCCAGCTTGTTAGCTCAGCTTGT
Found at i:25174 original size:20 final size:21
Alignment explanation
Indices: 25143--25181 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
25133 AAAATATCTC
25143 TTAATAAAGAAGCAAAAAATA
1 TTAATAAAGAAGCAAAAAATA
*
25164 TTAAT-AAGAAGGAAAAAA
1 TTAATAAAGAAGCAAAAAA
25182 CAAATTCTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.67, C:0.03, G:0.13, T:0.18
Consensus pattern (21 bp):
TTAATAAAGAAGCAAAAAATA
Left flanking sequence: Indices 24643 -- 25142
GAATGAGGTTCGACATCATAGGTCGAATTTTATGCTATTGTCCAGGCCTTGCGACAGTGGAGACA
CTATTTATTTGATTTCAAAGGGGATATTTTTTCCCTGCTCTTCCAATTTCTCAATGCCCAAAAGA
AGTTGAATAGCAGACATGCAAAATGGGTTTCATTTTTGACTAAAACGCGCAGGAAACAAAACCAA
GTTGCTGATGCACTAAGCAGAAGGCTTTCTCTTTTAGGAGCTATGTCTGTCGAAGCTGTTGGATT
CGAGGCTATTAAAGGTCAGTACAAGATGGATCCTTATTTCAGCTCGATTCTGGAGCAGTGCGAGC
TGCATACTGGTGGTCCAGGGTTTGATTCTTTTCTTCAGGAAGGATTTAATTTATCTCCAACCTTT
TCTTTTCTATCTATCCTTAGAAGTAGGGCAAGGGAAAACCTACAAAGGTGGACACCCGAAATTCA
CTGAAGGAAGAATAGTAAGTACTCTATGGGAAAGTAAAATATCTC
Right flanking sequence: Indices 25182 -- 25681
CAAATTCTAAGACACCCCGCCTGCTTGGGAAGAAGGATAGATTGATTCACCTAGCCGGGAGGACG
GAAAGGACAGAGATATAAAGCAATATAGCCTGTTCGGAAAGGAAAGCGCATCTCGCATCGCATAC
CGGATATCTCATACCTACTTGAGAAAGAGTATCGGATATCGCATATCGAAGACACCTGCCCCTGA
CCTGTCCTATCTTAGAAAACGATATCATCAAAAAAACACGAAAGGGATATGGGTTTTCTTACCGC
TTGACTTGCTTCTAGGCTTAGGGAGAAGGGCGCATCGCATGGGTTCCAAACCTTGCTTTTCTCTA
GAATTGAGAATCTCTCCTCTGATTACAAAAAAAAATCTTTTTTAAGAAAAATTGGAAAGTTGATC
TATGGAGCTCGAATTCAAGGCTTGCTATGAGGCCTGCATGCAAGTCTTCAATATATAACACTCCT
AAAATCTCTTGAGAATCTCCTTGCAGCGAGCGCTGTTTTCTCTTT
Found at i:34268 original size:18 final size:18
Alignment explanation
Indices: 34247--34289 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
34237 CAACCTTGTT
34247 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
34265 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
34283 GACTATG
1 GACTATG
34290 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 33747 -- 34246
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTTTGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCTAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 34290 -- 34789
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGAAAATGAGTTTCGCCTT
TTGAAGCGCCAGTCGCGTAGGGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGG
TTCATATTAGGGAAAGGAGAGTGAGGGGAAGAGGGGGCTGCCCTCGGCCCGATCATCCAATTCGC
TCCAACAGACAGGCATGGTTCTGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACGG
CAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACTCTGCGTAGATTGACTGAACGCAGAAAGCC
TTCCACTGGCAGGCGATCGTGTTTTTCACAGGATTTCTCGTTACTCATGTCAGCATTCTCACTTC
TGATATCTCCAGGTGTTGTCACCAAAAACCTTCCCCGATTGACAGAACGTCCCGCTACTGACACT
TGAAAAAGCAGCTTTCAAGGTCTCGTCGCTTCGGTGAATCACTTG
Found at i:36390 original size:7 final size:7
Alignment explanation
Indices: 36378--36407 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
36368 GCGGTACACT
36378 TAACTTA
1 TAACTTA
36385 TAACTTA
1 TAACTTA
36392 TAACTTA
1 TAACTTA
36399 TAACTTA
1 TAACTTA
36406 TA
1 TA
36408 GGTATAAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.43, C:0.13, G:0.00, T:0.43
Consensus pattern (7 bp):
TAACTTA
Left flanking sequence: Indices 35878 -- 36377
AGATGTTTCAGTTCGCTAAGTTTGAAAAGTCCAAAGAGCGCAGACTAGCCACGGAGCTTGGATAC
GGTTTCCCGATCGGAGATCCATGGATCACAGACGGTATCTCCCCATGGCCTTTCGCCTCTGAAAG
CGTCCTTCCTTCTCAATGCCCGGGCATCCATCCAATGCATTCTTTTCGATCTTGTACCCTATGTA
GGCTTGCTTCGCATAGGCTACACAAGCTGCGGAGCGGTACACTGAACACCAACCCAATCTCGACG
AAAAAAAGAAAAAACGTGCGCAACTACATCAAAAACCTCTATTCCTGACGTGAACGGATACTTTG
TCATTAGAGTGTTATAACCTTAAATAACGAGAAAGCTTTTTGATTTGTTTACTCAACTCGTAAAG
GCAAAGAAAAAAGGGATCCGCCTCGAATCAAAACGTTCTTTCTTTTCTTTTTCTACGCTACGAGA
TTTCTTCTCTTATGAAATTTATAGTTTGATCGGGGGCGGTACACT
Right flanking sequence: Indices 36408 -- 36907
GGTATAAGAATAAGCTTAGATCTCATTTAGAGTGAAATATAAACGAAATAGAAGAAAATCAAAGA
AGATATATCAAGGATTCGTTTTATTCTGAATCTTTCTACTGCCGATGGTCAGAATGTTACACCAT
ACGGTTAGGCGTCCTATCTCGATCAGACACACACCATATTAGGGCGAAATCAACCGAACTTGAAG
TCCCATGTTACGTTACGCTACCACCACGAAATAACTACCTCTTTTCTTTTGGAAAGAACAGAACA
AAGAGATGAAGACCCCGGCAAAGACCACTTTGAATGAGCAGGTTTCACGCTCAAAAGGATATTTC
GTCAATAGATGGGGCAGAAGGAGAAAGAAAGCAAGCATTGGGTTTACAGTCGGAACCACATAAAA
CAAAGCTTAACCTTAGCAATCACAGGGGTCCTCCGGCAGACATATCCCTATGAAACGTACGAGCG
AACCGAAGCTCAAGCCCGCACTACACCAGTCCCATTCAGCTACGC
Found at i:37414 original size:6 final size:6
Alignment explanation
Indices: 37403--37439 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
37393 GTCTTTGATT
37403 TACTTA TACTTA TACTTA TACTTA TACTTA TACTTA T
1 TACTTA TACTTA TACTTA TACTTA TACTTA TACTTA T
37440 TCGCCGCACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.00, T:0.51
Consensus pattern (6 bp):
TACTTA
Left flanking sequence: Indices 36903 -- 37402
TACGCAACAAGCAAGGAATTTAACTCAATGCACGCCTAGCGCGCTCTGCAACCTCACACGCAGGA
CCTCAGAGAAGCGCCCTCTGGTGGGACAGCGGTTAGTCATGCCCTAGCATTTTTTTTTTAGAAAG
ATCAGGGCGAAGATATAGATAGAAGCGGAATTGAGAGCGAAAGATAAGTGAAAGAATACCAGACA
GGCTAGACACCTAGAGAGAATGACTACATTAACTGAACATAGAACTGAGGTAATGATTTAACAAG
GCAGGCATCATCGTTCAGTCTGATTACTCTACTCAGATTGACTACAAGTAAGTTTGAGGCCCGTC
CTCTAAGTAAGGAAGCCTTTTTCCCCAATCTATCTTCCTTCAATGATATGGCTGTGGGACTAGGT
ATAGGCTATGGGGCTTTGATTGTTCTTGTTCCATCTCATTCGGGATGAATCTCGTCCTACGAAAC
AAGGCTTTTATCCAGACCTGCTCCTTGACTAGCGTGTCTTTGATT
Right flanking sequence: Indices 37440 -- 37939
TCGCCGCACTCATCTCGGCCTGACGTCGTGTCACGGTCACTCACGACTGATGAGATTCTAACTAG
AATCTTTCTTAGTTCCAGTGGAGTGGGATAACGGCTTTCTCAATCATCAGCACTAACTGCTCCAG
ACAGTTGTCATCCGCACCTTCATTCAACAGAAAGCACAGGCAGGCGCAGGCAGCCCTTTCGGAAA
GAAAAGATCTCTGTCGATACTTAGCATCAGTTTTGGCGTAATAGAGCTTTTCACGGGTTGTTGGT
GAATACTGATGTTATCAATCTGACGGGTTGGTGAATACCAATGTGTTATCTAAAAGAAGAAGAAA
ATGATATTCTAGATAGTTCGGCATTGAATTGATAGTTCGATCGAGTACCAAGACAGGGTTGCTCG
ACCCAACAGAAAATAGTAGCCTTAGTTAACTCCCTTTCTAGTGTTGTGCACAGTCTTTTTGGTCG
GGATATGGCTGCGGCGTGGGTGCTTCTCCGTCTGTGAATCGTTTC
Found at i:99175 original size:22 final size:22
Alignment explanation
Indices: 99147--99192 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
99137 AATTTAATAA
*
99147 ATTTATTAATA-ATTAATAGAAT
1 ATTTATTAATATAATAATA-AAT
99169 ATTTATTAATATAATAATAAAT
1 ATTTATTAATATAATAATAAAT
99191 AT
1 AT
99193 AGAATATTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 16 0.73
23 6 0.27
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.46
Consensus pattern (22 bp):
ATTTATTAATATAATAATAAAT
Left flanking sequence: Indices 98647 -- 99146
TTTTTGTTGATATCCACTAGTTCCATTCTCAACTGTGCCCGCCTAACTCAACTCTCTGATGCGAA
GAGAAGACCTCTTGTCTTTTTCCCTTCCTTTTTGGAAATAGATCCGAAAAATCCGGAATCAGCAC
ATTCGATTACTTTTTTTCTTGTACCACTTTTTCTTGGAATATTCTTTTCTCGTTTGGGCCCGCTC
TCGGGTACATTAGTATTCTGGGAATTGGCAACATTGACAGAAAAAAGAAGAAAAGGGGGTAGGAA
TAAACTTTTTTAGGTTTAGCTATACTAGGCCTAACCTTCGGTTCCCGTAACTAAGTTTTTCTTTC
TTACTTCTTATGTACTGTATGTACTGTACTTTTTTTTTACTTTTTTTGAAGTGTGGGGCAAAGGG
CGCCCTCTACTTCTACTTTTAACTAAACGCGAACAGCCGGCATTGCAAGCAGATAGAGAGCCCCG
CCCGTTTGAGTCGCGAAAGGGCCGCTTGCTTAATTAATTTAATAA
Right flanking sequence: Indices 99193 -- 99692
AGAATATTATATATCTATATATAAACTATAAACAATAAGAAAATCATTTTTTTTTAATTGTTCAT
TCCTGTTCCTGGGAAGAGGAAGAAGCAGATAGAGCAAAGACCTCCCCTTTCCGTCCGCTCTTCCC
GAAGTGAGCAAATTGCATGTAGAGATCCGTAGGGGCTTATAGTTTAATTGGTTGAAACGTACCGC
TCATAACGGTTATATTGTAGGTTCGAGCCCTACTAAGCCTACCACCCCTTCTCTTCTCTTCACCC
GAAATAAGGAAGTCGATGATCAGATCCTGCTGGTCTGGAAGACTGTTACCCCCCCCCAACCTAGC
ACAGAAAGAAGGCCGAGGCACAAAATACACTAACTTCAGCCCCGAGGTTCATTTCTTCCAGAGGA
TCCTGCGACATCTGTGGCCGATCTTTTCTTATCTACTTCAATATGGGCCATCTCAGCCTTGTATC
TTTCCTGCAACCTGGCTAAGCCAGCCGGCTAGCACCCTCTCTAAT
Found at i:117932 original size:38 final size:37
Alignment explanation
Indices: 117870--117944 Score: 132
Period size: 38 Copynumber: 2.0 Consensus size: 37
117860 GGGCAGTAAG
*
117870 GGTCGGAGAAGGGCAATTACTCATTCTTAAAACCAGC
1 GGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGC
117907 GGTCGGAGAAGGAGCAATCACTCATTCTTAAAACCAGC
1 GGTCGGAGAAGG-GCAATCACTCATTCTTAAAACCAGC
117945 ATTCTTAAGA
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
37 12 0.33
38 24 0.67
ACGTcount: A:0.33, C:0.23, G:0.24, T:0.20
Consensus pattern (37 bp):
GGTCGGAGAAGGGCAATCACTCATTCTTAAAACCAGC
Left flanking sequence: Indices 117370 -- 117869
TGGGTCGTTGCGATTACGGGTTGGATGTCTAATTGTCCAGGCGGTAATGATAGTATCTTGTACCT
GAACCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCAAAACATGCCACTGAAAGACTCT
ACTGAGACAAAGATGGGCTGTCAAGAACGTAGAAGAGGTAGGATGGGCGGTTGGTCAGATCTAGT
ATGGATCGTACATGGACGGTAGTTGGAGTCGGCGGCTCTCTTAGGGTTCCCTCATCTGGGATCCC
TGGGGAAGAGGATCAAGTTGGCCCTTGCGAACAGCTTGATGCACTATCTCCCTTCAACCCTTTGA
GCGAAATGCGACAAAAGGAAGGAAAATCCATGGACCGACCCCATCGTCTCCACCCCGTAGGAACT
ACGAGATCACCCCAAGGACGCCTTCGGTATCCAGGGGTCGCGGACCGACCATAGAACCCTGCTCA
ATAAGTGGAATGCATTAGCTGTCCACTCTCAGGTTGGGCAGTAAG
Right flanking sequence: Indices 117945 -- 118444
ATTCTTAAGACCAAAGAGTGGGGGCGGAAAAGGGGTGAAAGAGCTCTCCCTACCCATTAGGGAAG
GGGCCGAGACAGGGCAAACTCAAGGGACCCCCCTAGCGTAAGCGTAAAGAAAAGGCTTCCATTAA
GCAGGGGGCCACCTTCGACTTATCCAGATTTGAACCGAAGACTTCTACTCCGCCTGCGGAAAAGG
TTTGATTCCTTTCATAGTATACCTCGGATGAGTGAGCCCCTTTGCTTTGCCCAGGGGGGGCGGTA
GTAAGTGATGCTAGAGAAGCGAAGCCAAGACGAACCACAAGACTAGCATAGGATAACTCAGATCA
AATATGAATTTTCGGGTACTAGTTGTTGGGGCTACGGGATCCATTGCCTTTGTAGGAGCTGCGGC
CAATTCGAGAGAGAAAGAAGAGATCAGTCTGCAAGATACATTTAGGTTGATTTATCGTTTGGTAC
TTTAGACGGATCGTTCGATTCCCTTAGGTGCATAGACCGGTTAGC
Found at i:168822 original size:16 final size:16
Alignment explanation
Indices: 168801--168834 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
168791 TATCTACATA
168801 TATATACATGTAAATG
1 TATATACATGTAAATG
* *
168817 TATATATATGTAGATG
1 TATATACATGTAAATG
168833 TA
1 TA
168835 CATGTAAATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.41, C:0.03, G:0.15, T:0.41
Consensus pattern (16 bp):
TATATACATGTAAATG
Left flanking sequence: Indices 168301 -- 168800
TAATTGGGGACAATCTTATCAAAAAAATGAATTGCACACTGGATTCTCGATGTATGCGTCCCAGT
CTAAGGAAGGGGAATACAATACTAATAAAAGATCAAAGATCCGCTCCAACTTCTTGTGATTCGAG
ACTGGAAAGGAATATAAAATGGAAAAAAAAACAAGATGATGAGATTATGGAAGTACCGAGCATTT
ATTGCTACTGCACTTTTTATTCTAGTTTCTACTTTTTATTAAAATAAAATAAGTATAGTAAGTAA
AAATGATTCATTTGAATGAAAGTTGAGTTATTTATTAGTTCTTATCAATGATTAAAGAAATGAAA
GGGATTACAATTCAAAATCTTAAATGAAATGAGTGAACTGGATTGAATCAGCGGTATATAGATCC
AATACAATAGATAGTATGGTAGAAAGAACTAGATGCACCTTTCTACCACACTATCCATTGTATGA
AGATATGGGATTGATATAGATAAATATAAAATTTGTATCTACATA
Right flanking sequence: Indices 168835 -- 169334
CATGTAAATAGCACTCCGATTCTATTTCTTCGCTACACCCATTCGTCTTTCTTTCGATCAATTCG
AAATAATCCAACGTCAACTGCTCTACTCTAATTCATAGGTTTTATTGTATTGATCCCGAGATCTA
TCGAAACAATGGAAGAATAGTATGGGCATATAAAAAAATAAAGCAACCACGTCATCCTTTTTTTT
TTCTACTTTCTATAAGAAGAAATCACCCATCAAATATAAAATATTGAATGACCGAGCACTCAGAT
CCTATCGCGAGTCTTGATACATAGTATCTTCAGTCCTTTCCAAAACTCCAAAATTGATTTCCCCA
TCGGCCCATCCAATCTAATTCACGACTCAGTTAGTAGACACTACACTAATAGGGGAAGTTAGTTA
GGTAATTAGGAAGGATAGGATTTTGAGTCTTTCTTAAAACCCCTCCTTGGATCCTAGGAGCAAGG
ATTTACAGTCCTTTAGAACAACCTTTTGATCCTAAGATTTCCGGT
Found at i:168833 original size:22 final size:22
Alignment explanation
Indices: 168798--168840 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
168788 TTGTATCTAC
168798 ATATATATACATGTAAATGTAT
1 ATATATATACATGTAAATGTAT
* * *
168820 ATATATGTAGATGTACATGTA
1 ATATATATACATGTAAATGTA
168841 AATAGCACTC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.42, C:0.05, G:0.14, T:0.40
Consensus pattern (22 bp):
ATATATATACATGTAAATGTAT
Left flanking sequence: Indices 168298 -- 168797
GACTAATTGGGGACAATCTTATCAAAAAAATGAATTGCACACTGGATTCTCGATGTATGCGTCCC
AGTCTAAGGAAGGGGAATACAATACTAATAAAAGATCAAAGATCCGCTCCAACTTCTTGTGATTC
GAGACTGGAAAGGAATATAAAATGGAAAAAAAAACAAGATGATGAGATTATGGAAGTACCGAGCA
TTTATTGCTACTGCACTTTTTATTCTAGTTTCTACTTTTTATTAAAATAAAATAAGTATAGTAAG
TAAAAATGATTCATTTGAATGAAAGTTGAGTTATTTATTAGTTCTTATCAATGATTAAAGAAATG
AAAGGGATTACAATTCAAAATCTTAAATGAAATGAGTGAACTGGATTGAATCAGCGGTATATAGA
TCCAATACAATAGATAGTATGGTAGAAAGAACTAGATGCACCTTTCTACCACACTATCCATTGTA
TGAAGATATGGGATTGATATAGATAAATATAAAATTTGTATCTAC
Right flanking sequence: Indices 168841 -- 169340
AATAGCACTCCGATTCTATTTCTTCGCTACACCCATTCGTCTTTCTTTCGATCAATTCGAAATAA
TCCAACGTCAACTGCTCTACTCTAATTCATAGGTTTTATTGTATTGATCCCGAGATCTATCGAAA
CAATGGAAGAATAGTATGGGCATATAAAAAAATAAAGCAACCACGTCATCCTTTTTTTTTTCTAC
TTTCTATAAGAAGAAATCACCCATCAAATATAAAATATTGAATGACCGAGCACTCAGATCCTATC
GCGAGTCTTGATACATAGTATCTTCAGTCCTTTCCAAAACTCCAAAATTGATTTCCCCATCGGCC
CATCCAATCTAATTCACGACTCAGTTAGTAGACACTACACTAATAGGGGAAGTTAGTTAGGTAAT
TAGGAAGGATAGGATTTTGAGTCTTTCTTAAAACCCCTCCTTGGATCCTAGGAGCAAGGATTTAC
AGTCCTTTAGAACAACCTTTTGATCCTAAGATTTCCGGTCCCTTA
Found at i:271316 original size:22 final size:22
Alignment explanation
Indices: 271286--271339 Score: 81
Period size: 22 Copynumber: 2.5 Consensus size: 22
271276 CCATCGCAAG
271286 ACAAAGAAGCTGCGATCACAAC
1 ACAAAGAAGCTGCGATCACAAC
** *
271308 ATGAAGAAGTTGCGATCACAAC
1 ACAAAGAAGCTGCGATCACAAC
271330 ACAAAGAAGC
1 ACAAAGAAGC
271340 AAAAAAGAGG
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.46, C:0.22, G:0.20, T:0.11
Consensus pattern (22 bp):
ACAAAGAAGCTGCGATCACAAC
Left flanking sequence: Indices 270786 -- 271285
ATAGTAGTTTCATAGGCGGGAGGATCAATTGAGAATAGAATTCTAGGTAGCTCGCCAGTATCCGT
ATCCGTCCCTGCTGTCCAAGGCAGGTGAAGGAGAAAGTTATTTTAGAACGAGTTCTAGTATGTAG
CTCAAGTCTCGTCAACCATTCCATTCCCGACCTCATCCAGTCAAGATAGATAGGACTGGTACTGG
TCAATTCAATGTGAAAGGAAAGGGAGCAAGGCACTATAAGGAAGTGGGTCTTCTATTGAATAAGT
TCAGTCTCGTAGGCCTGCGAAAGATCTCAACGATAGAAAGTTGGCGAATACAATTACAGCAGTGA
AAGCCTCTCAACAATTACTTACTTCTATAGATGGTTGGAAGTCAGTCGCTTTTAAGACTAGATTC
CCTGTTGCACATGTCTGACTTGAGCTTTTCCGATTCTATTCCTATTTCCTGTTCCTGCTCGACTC
GAGAGGATCAAACAGAAGACAGCGCCATGTTAATGCCATCGCAAG
Right flanking sequence: Indices 271340 -- 271839
AAAAAAGAGGGTCTTTCATCACTTTTCTCATATTTCGCCGGTAAAATAGACTAGTAAAATGAAAG
TGGAGATTGAACGCTAGAAGGCGCAGATAGGAACTGCGAGCACGGATTCTAATCAGAAGGCGAGC
GAGCTGTGTTCACTTAAAGCTTCACTTCAGGTTTTGTAGTGGGAAATGCTCCAAGGAAAGAGATT
TGAAGACGTAGCGCAGTCTGTAATGAGAGCGGGATGGGGACGGAAAGGGTTCCCCCTCTCCTGTA
GTAGCGAACCAGTAAATTTGGAATTTAAGAAACCGTAGGCCCAACGACAAGTCCTCAGCAAACAT
AAAGACGTGAACGACCAACGGTAAGAGCGAGTGAACTAGTCAAGAACTCAAATCCGTAATGCGCT
TAAGGCATTGATAATCCAAGTCTTAAGTGCGACCCACTCAATGGATCATCTCGGGCAATGTTCTA
ATATATGGTTCTCATTTTCGAACAAAAAATACCTTAGAAAGAGCT
Found at i:274289 original size:15 final size:15
Alignment explanation
Indices: 274269--274302 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
274259 AAGGTGCATT
*
274269 TCAACTCCCCCACTC
1 TCAACTCCCCCACTA
*
274284 TCAACTCCCTCACTA
1 TCAACTCCCCCACTA
274299 TCAA
1 TCAA
274303 TTGTCCACTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.26, C:0.50, G:0.00, T:0.24
Consensus pattern (15 bp):
TCAACTCCCCCACTA
Left flanking sequence: Indices 273769 -- 274268
TTCCAGCTCTTCAAGGACTTTCGCCCATTTATAAATTTCGTGCTTGTAACTGCTATATCCTGGGT
GTAAAATCCGTCCACTGGCAGTAGTGATCTATATCCTTCTATCTATCCCATTTTCATGGCGTAAA
AGAAAAGAATATAGCCAGTTTCTCCTTCATCAAAATAGGCCGTTTATCTGTCCTCTCCTCTTCGT
AACTTCGTCAATGGAGGATAGCTCTTTCCTAGTGATAATCTATTCTTAACACTAACGGTTTCCTC
CAAGTTGCCCCATCCTGTGTCTTTCAGAATAGCCTGCTTGAGGGGCCTGAAAAGCCACCCGCTAA
CTTGGTTGATGCGGAATCCAATGCCGGTGATTTCAGGGAGTTAGATCGCATTTTCTTCAACGGAA
TAGAAGAGAAGATGGAATCAAGGTCAATATCAACCAAAGGGAGTTGAATGTATCCTTTATTGACT
CTTCTGACACCTGAAGGTACACACCAGAGAGAGAAAAGGTGCATT
Right flanking sequence: Indices 274303 -- 274802
TTGTCCACTTTCCATTATCCAGGTCCATCTCCATTATCAGGGACAAATGGGGTATATAGAAGTTA
AAATAGCTTTTTATGCTGAGGTGGATTGAACCTCTCTCAAAGATGAACCCAAAGAGAGCTCTAAC
GCACTACTATAATATGTTAATAATCGAGCGCATCCCTTAGGACGAGCAGCCCTTGAGTGGGAAAC
TCCAAGCTCTGTCATCTTCGCATTCGTCTAGAAAACATCTTCTTGCTCATCAAGATTGAACCAAT
GATAAGCTTTGAAGATCTACAACGGAGAGTGCTCCATTTGGTTCATGCAATATGAAATTCCGTGG
GAATGATTGTCAATACTAGACAGGCTCTTTGATCGAATGGGTGATATAGCTTAGTATAAACAAAT
CAAAGCTATTCGTCTAGTCTACTCCAAGCGTAGCCTAAGCAGTAGAGGAGAGGGATCACCAACAG
TATGGCAAGGGGTGAGAGCCCGATGAAAGGCTCAAAGTCTCCCTG
Found at i:275095 original size:14 final size:14
Alignment explanation
Indices: 275076--275107 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
275066 GATATCCCCT
*
275076 ATAGAGACTGAGGC
1 ATAGAGACTGAAGC
275090 ATAGAGACTGAAGC
1 ATAGAGACTGAAGC
275104 ATAG
1 ATAG
275108 GGCCTTAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.31, T:0.16
Consensus pattern (14 bp):
ATAGAGACTGAAGC
Left flanking sequence: Indices 274576 -- 275075
GATCTACAACGGAGAGTGCTCCATTTGGTTCATGCAATATGAAATTCCGTGGGAATGATTGTCAA
TACTAGACAGGCTCTTTGATCGAATGGGTGATATAGCTTAGTATAAACAAATCAAAGCTATTCGT
CTAGTCTACTCCAAGCGTAGCCTAAGCAGTAGAGGAGAGGGATCACCAACAGTATGGCAAGGGGT
GAGAGCCCGATGAAAGGCTCAAAGTCTCCCTGCAGATAAAAAGATTGAAAGATTGGTAGTGGAGT
TTGAATCTCAGTAGTGTTTATCGAAGAAGTCCCGTTAAAGGACCCTCCCTTTGATCCCGATTCGA
GATGAAGAATCATCCTCTATCTATAGACATTAACAGAATGCGTTCCCTGTAGACGTTCGAGAAGA
CTGTCGAACCCCCTGGGGAACTACTTGTTGATCCGCCCCTCTCCCATTGTCCAAGATTCCCAGGT
GTTGAAAGCACATCCAGCATTTGAATAGGGTTGAAGATATCCCCT
Right flanking sequence: Indices 275108 -- 275607
GGCCTTAAGCAACCTTTCGGAAAAGAAGATGTATCAAGGTAGACTGAAACTACAGATATTGAATG
AAAGGCTCCGGGTACATTGTGAATAGGCGCAGTTTGACTATTCATTCGGGGAAGACGCGTATAGC
ACCGGTCAGAAGATCAAAGAGGACTCACCCCCAGAAGGCGAAGTCGCAGGTTCATAAATAGGTGT
ATTACATAGATCCCTTCTTTCACTTAAAAGAAAGAAAGAACATTAGCCCAGCCGGCGGATAGGCA
AAAATACCGGGCATCTTAGATTGAATCTTAGATCTTTTTCGGGATGGAAGATGGGAGGTCTAGCT
GGGTCTCTCTCCATAGCCTAAATTATAAAGCTTGCCACAGGGTGGGCTTGGCGAATAGAAGTAGG
TGGTTCAAAAGCAGTGCAGTATGGGGTGGATAAAAGGCGAGAAGGGATACGGAAGAGGAGGAGAC
CAATGAGACTTTAGTCGATGTCCAGGTATGGCGGGAAGGACTGAG
Found at i:343388 original size:18 final size:18
Alignment explanation
Indices: 343362--343396 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
343352 AATGAATATC
* *
343362 TCTTTTCCAGTGGATCTT
1 TCTTCTCCAGCGGATCTT
343380 TCTTCTCCAGCGGATCT
1 TCTTCTCCAGCGGATCT
343397 ATATTCTCTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.11, C:0.29, G:0.17, T:0.43
Consensus pattern (18 bp):
TCTTCTCCAGCGGATCTT
Left flanking sequence: Indices 342862 -- 343361
GTCAAGAAAGGGATGCGTTTCCCTTGTCGGGCCCACCTAAATGAACCTGACGCACTTTGGCTTAA
TTAGGGAGTGAGGCCCCTCAATAGTAAGTTGCTGCTACGTTTGCTGCCGTAGGAGGACTAAGGGC
CGTCTTTACTTACACAGCCGAAAGATAAGATGCGCTACTAATGCGGCTCAACCCCCCAACACGCC
AATACTCGCAACTGGTCGCACTAAGGAACAATGACTACTGACTACTTTGGCTTAAGGCTAGAAAA
AGACATTGGGTGTAATCGCTCTGGTTCGCTCAGATTCCGCTCTTCATTGAGTTGGCTTCTCCGGA
GGATCCTCGCTTTGTCTAGACAGCGGTACAAGCAGTCCCCCCGTTGGAAGACCTATCATAACCTT
TATCTTTATATGAACTATATCCACTACACAGACTTTCCGATACAGAAAGAGAAAGAGAAAAATCG
CCTACCAAAAGACTTTTTTTCGATCTTCATTCTCTAATGAATATC
Right flanking sequence: Indices 343397 -- 343896
ATATTCTCTGGAAGATCCCCCTTATCTTATCCATCGGGAGATCATTATGATAAAATGGGTGGAGA
AAATTGAGCAACTACCATTTGCATAGACCAATCCTTGACCTTGATCGAATCCCCCAAGCTCACTC
GAAAGCCCTTTTTCGCTCTATAAATGCTGGGTAACATTGAATTGCTTAAGAACGAGTATAAGTCG
TTCTAACGCGATCTGAGAGGCTTCGTACTGTCCTTGTTGGGCCAGCCGTCTATTACATAATCAAA
GTAAGTCCTCCCTGAAAGAAGGGAAACCACTATTCTTTTAGGAATCCGGCTAGCCAATAGAAAGC
GCTACTCGTAGAGGCCTTAAGCGAGTATTCAGTAAAAGTCAGTATTCACTTTGCCCTTGTTTACT
TTTTTTGGGCTAGCTAACCATAGAGAGGAGAGCCCGTTGAGGAATGGGCATCTGAACCGGGCCAA
GCTCTTGAGATTGTTGGGTATGGTCAGCCATATTAGAAATAAGGT
Found at i:414537 original size:23 final size:23
Alignment explanation
Indices: 414510--414554 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
414500 ACAGAATTGA
414510 CTAAAGCCAGAAGTAGAGAATCC
1 CTAAAGCCAGAAGTAGAGAATCC
* *
414533 CTAAATCTAGAAGTAGAGAATC
1 CTAAAGCCAGAAGTAGAGAATC
414555 GGGCTATTTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.44, C:0.18, G:0.20, T:0.18
Consensus pattern (23 bp):
CTAAAGCCAGAAGTAGAGAATCC
Left flanking sequence: Indices 414010 -- 414509
AAGAGTGCCTGCGGAGGCGCTTGCTTAGATGAGAGTGGAGTTCCTTCACCTCCAACTGCTTTCTT
TCCTCTCAACCTCGAACAGCCCCACTGCCTCTCTCTCGTGGGCTAACCAATGCGCCCCTACTAAC
AGCTATCTAATGCAAATATCATATCTCATTTATGAGCCATATTCGCCTGAAAGCTTAAAGGCAAC
TGAGAGCCAAGCAAGCAAACCGTAAGGCCCACTCGACCAGTATGGATTCCCCCGGCCCGGCTCTA
CCTCAGTGGATCTACTCTATTCTATTATCTCAGTGGATTCCGAACTTATATCAAATCAAATGAGT
AAGCAGTAGACTTCAAGTCTAAAGTTTCAGATATCAATAGTAGTTAATATGAATATCATAGTCTA
TTTCCAATATTCAATTGATCGTATGGAAAGGCGCCTACACGGAACCTATACGAAGGAGCAAACAA
GCAACGGTAACTACTATACTTGACTTGACTTGCCCACAGAATTGA
Right flanking sequence: Indices 414555 -- 415054
GGGCTATTTCAGCTCACGACTTGAAATATTGAATACTTTAGGCAGCTATCGGACTCATAAGCAAG
AAGTGGATCCTAGCTCAGGAGGAAAGAGCTATCCATCTTTCCTGTCTATAGATCACGAGCTTACT
CGAAGAAGTACTTAGGATTATCAAAGCTCACTTTCCGCCCTGTACTGTAGTTCAGAAAGCTGATT
GAGGGCAAAACCTCTTCTTCTGTCTTCCCAGCCTCGAGAATCAAGCACCAACAAGGAATCGAGCA
CGAAGATAAAGGTTGGTCTCCTGGTCTTCTATTGAAGCTCGAAGAGCAGAGGAGAAGGAATAAAA
TAAGGGCACTCCTTAGGACCAGTATGAGGCTCACTATCCTATCTAGTGGCTGCTTTCTAGGCTCA
AGGAATAAAGACAAAGACAGCTATTCGGAAAAAAAGACTAATCACTCAACTTCTGAGCTCAGAGC
AGATCTTTACTTAGGTTGGGGTTAGACTCCAGCCCGCTATCCCTC
Found at i:468618 original size:19 final size:20
Alignment explanation
Indices: 468569--468619 Score: 52
Period size: 19 Copynumber: 2.6 Consensus size: 20
468559 CGAATATCCA
*
468569 TTATA-TTATCTATAGATTTT
1 TTATATTTATATATAGA-TTT
* *
468589 TTAAATATATATATAGA-TT
1 TTATATTTATATATAGATTT
468608 TTATATTTATAT
1 TTATATTTATAT
468620 TGATTGAGAG
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
19 12 0.48
20 4 0.16
21 9 0.36
ACGTcount: A:0.37, C:0.02, G:0.04, T:0.57
Consensus pattern (20 bp):
TTATATTTATATATAGATTT
Left flanking sequence: Indices 468069 -- 468568
TAGGAGAGCTTCCTTGCCTAGCCTATGCTTCAAGGCTAGTTTCAAGCTTATCACAAGGAACGATT
TCTTCTATTGGATTGAGCGAGGGGATCCCTTTCAGTGTTAATACGGAAAGCTGCCTGGTTGCCTA
TACTTGGTTGCAGGAAGCTAGTCGAATGCGTGCTCTTGTATCCCTTTCGGTGGTTTTTTGCATTT
TTTGCCCTTCCTCTGAGGTTCGCTAGGGCGTGGCATTCAGTTACATCCAGTCTCAGTTCTGCTTC
CAACTACCGATGGGAGAAGGCTTAGACGTATAGCAAGATTAAATAAGAGGTATGGCATACGGGAA
TGATATATGAAATAAAAGGCTGGAAACAGAGCAGGAGATGAGCGCTAGCCAATGGTTAATACTTC
AGAAAGCACCTTCTAAATGAAATTAAAAGTAATGCCCCTATCGACCTCAGTCTTGTTTTTTGCTA
GCTTGAGTCTAGAACTAGACTATATCATTAAAGGCCGAATATCCA
Right flanking sequence: Indices 468620 -- 469119
TGATTGAGAGTAAGTTAAATATTAAAAAAATGGATCATAGGTTGGTTGAATATTGAGTTCCGCTT
AGGCTACGTGTTCTGTTCACGCGCTACTAAGCCGCACACAGGATCTTAGACAGGTTTTGTCCCCT
TTCGGGAACGCCTTAGGGGCTAAGCCTGATGCAAATATACCGAAAAAAGAAGATATCTATGGTCG
ATTCTACGAAGAGTAGATTCGCCCCTTATGTTATGGCTCGTCTCGCGCTTAGTCCCTCGCGGGAT
TCGGATAGGGGAGCGTTTTTTCAGAAAAAACTTGCTGTTCTCCCCCTTATCTTATATATAATATA
TATATATATTAGAGATACTAACTCTTTGGTTGGATCGGACAGGGGCTTCTATAAAGATCTTTCCA
CTCATTCATCATACTCAAAGTCGAAGCGAAGTCACGGCATGGGAGGCTCGGAAAAATAACGAGAA
TCGGCGTCGTGGTGGTGCTACGAGAATGGCGATTTCTCGTATAGA
Found at i:470863 original size:20 final size:20
Alignment explanation
Indices: 470838--470875 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
470828 ACTCTTTCTG
470838 GGAGATTGGACTATGGAACC
1 GGAGATTGGACTATGGAACC
*
470858 GGAGATTGGAGTATGGAA
1 GGAGATTGGACTATGGAA
470876 TCCCACTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.08, G:0.39, T:0.21
Consensus pattern (20 bp):
GGAGATTGGACTATGGAACC
Left flanking sequence: Indices 470338 -- 470837
TTGAGCCGTAGAAGAGGACCTTTCAGAAGGACGACTGGCTTTAGCCCTTGAGCATGGAATTAACC
GAGAGTGAACCTATTTAACCTATTTTAAGGGGGATTCTCCATTTACTGTATCGTTTACTTTTCTT
GTGGTGATGGGAATATGTAATATTGTTGTAGAAGTTTCCAGGCTCACAGGCTTTAGATTGGACTA
TGGAACCGAGCGAAGACCTTTGAGATTGATATTCCCCGGGAGAGCCCACTTATGAAATGGATCGG
GACTTACCTTGGGAACTTAACCTGAATGGCATGACTTTGTTCTATATCTTGCCCTACGAAACCCT
CGCTTGAGCTTCTTATTACTTGAATCAGAGATCTTTGGGATCCTTTGGTCGAAAGCATAAGTATA
CCTCTTCTAAAGGTAAAGGTCGAGCCTACTGAATTTCATGAGCCTCTTCCCTCCTCGTATTCACC
TGCATTAGAAGCAACTCCTCCAAGTTCTTGGAATGACTCTTTCTG
Right flanking sequence: Indices 470876 -- 471375
TCCCACTACTGAACCTGTTACCAACCTTTGAACTAATGGTTCGCTACTAGATAGATTCTTTCATT
CCGCTTAACCCTATGAAATGCGTTTTCTAAGCACTTCATGTTCTGGTGATATGTAATATCTGAGC
TTCATCCGAGACTTCCAATGCGGGTGAACCAGCCAAATTGGAATAAAGAATATGAATAGGAATAG
AAAGGTGTACTATCGATCAATGCCCGAGCCCAGCTCCTTGGCAAAGGAAGCTTTTAGGCATCTTT
CTCGCAGTCAGTGTCGGTACACTGTGGGTGGTAATAGGGCGTGGCAGGAAGGGTGCTCGCCTATG
CGATTTTCTTGCTTTGTTTCGGTCTTCATATGTTGGTTGGCGACTCTCTCTCGTTTGTAGGAGTG
CCTATGCTTTATTTCCCGCTTGGGAGAAACAGAGAATATCTGGGATAGTACCAATAGAAAAAAGT
TCTCCTATGCGTTTATCACACAAGTATATATTCCTCCGTCCCATG
Found at i:478050 original size:21 final size:21
Alignment explanation
Indices: 478020--478059 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
478010 CGACCAAAGG
478020 CTCAGCCGAAAGAGAAACTTT
1 CTCAGCCGAAAGAGAAACTTT
* * *
478041 CTCAGTCGAAGGATAAACT
1 CTCAGCCGAAAGAGAAACT
478060 GAATTAAAAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.23, G:0.20, T:0.20
Consensus pattern (21 bp):
CTCAGCCGAAAGAGAAACTTT
Left flanking sequence: Indices 477520 -- 478019
CGGCGAGATAGTGATCTATCCTCAACTTGTATATTCTAAGTAAATACTTGGTCGGTCGATACGAG
ACTCTTTCTTAGTTCAGTGGGAAGACAGCACCGAATCAGACGGGCACAGAAGAAGAAGTGCTTTC
ATCCGACCGGCGAGATAGTTCGACGTCAGCTAACTGAGAATCCAATATAGAAAATTTCTTTTCTA
ATGATTTCTCAATATAACGATTTCTTGTGAGCCACGAAACTGATAATCCAAGTCGTAAGTACGAA
CCACTCAATGAGAATCTCAGGCCAATAAGCTACGACTACGAAACGAATTGGATCGGGTTCAGCGC
TTGAAAGCTATCGAAGAAGAGTCAATTCAATGCTCAAGTCAAGTCAAAGGGGGGAGTCCACTTAT
TCAATAGAAGACTGCTTCATATCTCAATCTATAGATCGCAATCCGTGGGCAAGAACCCTTCAGCG
GACTCGACCTTTAGAAGAGGAAGCGAAAGATGACTCGACCAAAGG
Right flanking sequence: Indices 478060 -- 478559
GAATTAAAATCTCACTTTAACTTTAAGCCGGTTGTTAGCCGTCTCAGTAAGGCTAGTGAGCAAGT
TTAGGTTTAGGAATAGGAATGATGATTAGGAAGCGAAGCAACCTCTTTCTTATCAAAGCTTTCAC
GGGATTGATGTCACTTAGCAAACAAACTTTTTTAGGAAAGCCCGTATTTTTGTCCTACTTTTGTC
CTACATTACTTATATAAAATTGTAACTGAGTGGATTCAATCCCCTGTTCTAGACATCGGTCAAAG
AAATAATAAGAATCAGTACTCTAATAGGGCCTGCGGAACGAAACTGCTTATCGAACCAAACTCTA
GGTTGTGAGCTACGAAAGGGAAGGACCCATGTAATAAGAATACTGTGGAAGGGAGCCGATATACT
GATCTATTTAGGAAGAAGGGAATGGGTGAGTCATAGCTGTAGCTGTAGTAGCTGTATTAGGATAG
GTTAAGGGGTATGAGATATGTAATATCATGAGTCTAGCGAGGTAG
Found at i:506201 original size:27 final size:27
Alignment explanation
Indices: 506156--506213 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
506146 GGTCCAGGCA
** * *
506156 GGAAGCAGATATGTGCCTATGCTGTCT
1 GGAAGCAGATATGCACCTATGCCGTCG
*
506183 GGAAGCAGATGTGCACCTATGCCGTCG
1 GGAAGCAGATATGCACCTATGCCGTCG
506210 GGAA
1 GGAA
506214 ATGGGAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.24, C:0.21, G:0.33, T:0.22
Consensus pattern (27 bp):
GGAAGCAGATATGCACCTATGCCGTCG
Left flanking sequence: Indices 505656 -- 506155
GTCTTAGCGGATTTTGTATTAGCTTCGTTGTCCCGCTTATCAGTACAGTAAAGTCATCAGGGTCA
GCTTCCATGCTTTCCTTGTTCATCCACCGGCGAGATAAATTTGAATCCTACACGTGGGAAAGATA
CATTGAGCTAATCAACAGCCCCTTCTTCGGGCAAGACCTAGTCAATCAAGAAAGAAGTAGGTGAT
GGGTTATAAAGGAGCAATTCAAACTAAAGCTGGAAGCATTGGAAATTCAGTGAAAGGAAAATTTC
GTAGATCAGCAGATCGGATCAACCTTGAATCATTTAAAGGATCAAGCTGTGTCAACCAACGGCAG
GAGCAGGTTCACCATTTTAGTTCTATACTGGAGCCAACCTCTATTCTTCTACCTACGCAATTTCT
TTTGATTGATTGAAGTACGTGATTTCCTCGATAGCTATTTATTGAGAAGCGGCTAGAAGCCAATT
TCTTGTATCGAAGATAGGTGGAAGCGTGAGGAAAAGGTCCAGGCA
Right flanking sequence: Indices 506214 -- 506713
ATGGGAGGAATGCCAGGCGAAGAAAGAAGGAATGCCTAGGCAGGAGGGAGAAAGGAAACTGATCT
TGGAGGGCCAAGTTGCTCGCAGTGGGCCGGTAATTCACAACTGAAGTAGGGAATTTCCGTCCTTT
ATCGGTCTTGCTCACGAGCCAAGAAAGATAGAAAGTAAAGATAGCAGCTCACGTTAGCGGGTGAA
GGTTGCTTTTAGGCCGGAATCAAGCAGGGGTAGAACCCTACTCTTAGAATAGGGATTAGGCAAAG
CAAAAGAAGAAGTTTATGCTCGCACGGCAGTGGGCATTAGAACCTGTTCGCCGGGGGCAAGCGGA
GTTCAGTCGTCACAAGCAAACTAGCGAAGCAGTTCTATTGGCCAAAGCACATTATTCAAAGAAGT
AAGAAAGAATTGAATCGATTGACTTGAAACAGTCTATCTACCCCAGTAGAAGAAGAGAAGGAATG
AGAGATTCAGGTGGGTTAGGAAACATCATCCGCTTGAAGCAAAGC
Found at i:541926 original size:15 final size:16
Alignment explanation
Indices: 541906--541938 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
541896 ACAAAGCAAG
*
541906 CTTA-TTGAAATAGCC
1 CTTATTTGAAAGAGCC
541921 CTTATTTGAAAGAGCC
1 CTTATTTGAAAGAGCC
541937 CT
1 CT
541939 ATAGCTGCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.33
Consensus pattern (16 bp):
CTTATTTGAAAGAGCC
Left flanking sequence: Indices 541406 -- 541905
CTACCGCTTAGAATGACGACTAGGTACTGAGCCCCTCAGCAAACCCTTGCAAGAAGGACACAAAC
AAGGAAGAACACGCCCCTTCCTGGAGTGGAAAGACTCCCAATTGGAATCACTCGCTACTGGTGCT
TCAGGTGCTTTCCACCGCTCTAAAGTGTGTTTCGTAAGGGGGTAGGCTGCATTATATCGTATAGA
GAAGAAAGAAGCAAGACGGACAACAGAAAGTTAAGCAGAAAGTGCTATTATTGGGGTATACGCCC
CCCTAGCCCCTACCCCCGGTCTCCGCTCCCTGGATCAACGACTAACGGACGAGGAGAGCTCGACG
TGAAAGCTTAATGGGCAAGCGAGACTTCCCTTGGTCTTAAGGGCGTGGAACCCGAAGCGTGAGGT
CGCGCCAAAGAGACGATCGACAGTGAGGCCTATCAGAAAGTTCCTTGTTTGGGAGTCAGAGGGAA
ATTGTCGTGATAATGTGCCTGGGAGTTAAACAACTACAAAGCAAG
Right flanking sequence: Indices 541939 -- 542438
ATAGCTGCTCTACAGTAAGGCCGGCCTGGCCTCTGGGCCGATTCGTCATATTCTCGATCGAGATT
TGGGCGTATATGCATCTTTCGCATAATTCAATTCTGCGGACTGCGAGGTGACCTTCGGAGAGGCC
TATAAGAACCTAGACAGCAAATGTAGGAGCGGACGGAACGAAACTACACCTGATGCCGCCCGCTA
TCAAGCGATCAAGTCAGTGGTGTTAAAGTCAGGTGTTCCAGAGGGGCTAATGGTTTTCCCCAGTC
AGAAGCATTTTGTGAACTAACACTCTGCACAAAGGTCTCCACCCGGTGATGCTCATTCATGTGGT
AGAGGAATGAGAGCTTTTCTAAATCCCCAGGGGAGCCAGCCGAAGATGAAAGGTCCGCGGATCAA
CCTCAGCAGGTTTGGTTCCAGTTTCTTTGGAGGGAGTCCCACCAATGGGGCTTGGGGTGCGATAG
TGCCCTTTATTCCGGGTGACCTGGATAGAGCACTTTTGATCATCT
Found at i:587710 original size:24 final size:24
Alignment explanation
Indices: 587682--587750 Score: 59
Period size: 26 Copynumber: 2.8 Consensus size: 24
587672 TTTTCAGTGT
587682 AATATATCTTGGCTTTTGAATTCG
1 AATATATCTTGGCTTTTGAATTCG
* ** *
587706 AATATCTTGCTTGGCTGATGAATTTG
1 AATAT-AT-CTTGGCTTTTGAATTCG
*
587732 -ATAATATATTGGCTTTTGA
1 AAT-ATATCTTGGCTTTTGA
587751 GACGATACGA
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
24 14 0.41
25 4 0.12
26 16 0.47
ACGTcount: A:0.26, C:0.10, G:0.19, T:0.45
Consensus pattern (24 bp):
AATATATCTTGGCTTTTGAATTCG
Left flanking sequence: Indices 587182 -- 587681
CCGTAGGACCAGGAAGTGCCCTGCCTTGTTTGGTTTTGCCCCAGGTGAGGGCTTATTAGTTCATA
CACTAACTTCGAGGAACATAATACGAGGTTTTTCAATCAGACTTTCACGCATCGTTCTTACACTT
CTCTCACGCATTGTTCTTACACTAATAGCTCCGACCCCGTTGTTCAGCAAGTTCAGGCACGCTTT
GTTTGGGTATAGAGAGGGCTTGTCCCCCTACTGTACTGGTCCGTACTAGCAGGTACGCACTTGGG
CTTTCGAAATCCGGTCGGTCACTAGAAAGAAGATCGGCGCTTCATATGGAAACTTCACGAGCTGC
TGCCTCACGTAGATCGTCTTAATCTGGTCCACAGAGCTTTAGCTTTCTTCTTTAGCCTCTAATAT
CTGACCTTTCAAGGTACGAATAATGTGGAGTCAGTTCGGCAAACACTTTGTTGCCAGGAACTATA
AAACAAAAACACCTGGGTTAAAACACTTATTCGACTTTTCAGTGT
Right flanking sequence: Indices 587751 -- 588250
GACGATACGATATGAGCCTTAAGGTGTGTGAGACCTACCCCTTCCCTTGCCCATCCCATGCAGCT
TGGTAGCGAGTCTTGCCCGAATGCCATTGGTTTTGCAAGTAACGAGATCCCGATTCCCCCGTTAA
TAATCCCCGACGCCAGGTGTTGATCCACCAATTGATGTCCAGGTGCCATCGCTAGATTGAGATCT
ACAGAGTCCAAAAGCGTAATTTCAGAACAGAAGGTGTAGATTCCTACTCCTTGTTTACAAACCAA
CTCTGTAAACATGGGCTTGCCAGCCTGAAGGCGCGTACACACTTAATTGGGGCCATGGGAGGACC
AGTTGATCGGGCTCATACTTACAAGAGTCAGCCTCACCAAATAGAGGACACTTTTGCTTTAATCA
CTTGAGCGCACTCTAAAGGATAGAGATCCCTATCACTAGCAGGTTTTATCGTGGCTCTTTGCCCT
CATCGGTCTTTGCCCTTATAACTGACTTTTTTAACCCTCCCTGAA
Found at i:591139 original size:8 final size:8
Alignment explanation
Indices: 591126--591159 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
591116 TTCATAATAC
591126 TTCTTTTT
1 TTCTTTTT
591134 TTCTTTTT
1 TTCTTTTT
*
591142 TTTTTTTT
1 TTCTTTTT
591150 TTACTTTTT
1 TT-CTTTTT
591159 T
1 T
591160 CAAAGGGGAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 17 0.74
9 6 0.26
ACGTcount: A:0.03, C:0.09, G:0.00, T:0.88
Consensus pattern (8 bp):
TTCTTTTT
Left flanking sequence: Indices 590626 -- 591125
CATGTTCATCCTTACTAACATCCCATAAAAAAAATATTTTTTTTTATGGTCTGGATTTTTTCAAT
CACCTTAACGAAGGAGGTGGACTTCAACCAAGCCAGCCCTTCTTATGAAGTGGCTATGGGGATTT
CAAAAGGAAAAGAAAAAAGCCATGGTGCTCATATTTGGCTGCTAAGTACCTCTCCAATGTCAAAA
ATGGATTGACCAACCCACCTCTTAAATATCCTGCATCTAGAAAGGTCTTATTTTGTACAGTACAG
AGAGACTTTCAGGCAGAACTTGGGCTAGACTTTGGTTGGGCAATGGTAAGCCGATTCGCTTCTGG
GATGATGTTTGGCCGTGCCACCCTCCTCAGAGATGCATGCCATAATTTATATCAATTCACAAGGT
TCTCATGACCTCAAAGTGATAGACTACATTCAATATAAAAGCAAAAAAAAAAGAAAAGGCTTTCT
CTCCCTATTTAACTGCCCATCCAAGAGCATTTAGCTTCATAATAC
Right flanking sequence: Indices 591160 -- 591659
CAAAGGGGAATGAAGGCCTTCCTTAAAAGTTGTCGCTCGATCGAAAGGATATAACACATACGAAA
CCTTAGCTTCGCGGACTTTCTGAGGTATAACCTTCGCCACGACATTAGTGGCTTAGCTCTTCGCG
CTTCCCGCAGGCTTTTTTTATAGAGAGAGAGTAAGGGGGCGGTACGGAAGATTGGTCCGCTCCGC
AAAGCTGAGCTTTTCGGTTCGCTCCCTCTATGCGGTCGGCCTTCTTACCAGTCTGCCTCCTTTCT
CTTTTTGGAATATAACAATGCCAGCTTTGCTTGCGTTCTTCACCGGCGCTCGCCGGATGTATCAC
TTATCCCGCTCCTAAGGTAAGGAGTCTTCTCTGTGTTATAATCTTTGCGGGAATGAATCGCATAT
GTTGGTTGAGAATTGCTCGGGAATTCATTGATAGTTACTTTGCCAGGTTCTAGGGGGGCTACTCT
TCTATTCTTTTTTGTCGATCGAGCCGCTCTCCCTCATTCCACTCG
Found at i:597247 original size:18 final size:19
Alignment explanation
Indices: 597224--597263 Score: 57
Period size: 18 Copynumber: 2.2 Consensus size: 19
597214 TTTTTTCTTT
597224 AAAGAAAG-GAAGCT-AACG
1 AAAGAAAGCG-AGCTCAACG
597242 AAAGAAAGCGAGCTCAACG
1 AAAGAAAGCGAGCTCAACG
597261 AAA
1 AAA
597264 CAAGCGAAGC
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.55, C:0.15, G:0.25, T:0.05
Consensus pattern (19 bp):
AAAGAAAGCGAGCTCAACG
Left flanking sequence: Indices 596724 -- 597223
GCGTGTTTTTTTCCTATCTAGAACCCCCTAGTCGTGAGAAAGAGCCGCTCTACCCCCCTCATTCA
TGATTCATGTGAGGAAAGAAGGAGGAAAGAAATAGGCGATCTCGTTAGCATGAACCGTCCAAATT
TAACCTCCCCTGGACGAACAATCGACAAGCCAGACATTATTTCCAATGCAAAATAAAAGAATTTT
ACGATCTGATTCTGGAGGAGAATACATGCCCACGGAATTCTCTCAATATCTTATCCAGAGGCACT
GTTCATCAGAGATCTTGTGCGTATACTCCTGGAATAGCTGAGAGGCAAAATAGATACTTATTGGA
AACGGTTAGAGCTATGATGTTTGGGATGAATGTACCCCGTTTGGGTAGAAGCTGTGTTGACCGCA
ACATACTTGATCAATCGCATACCGTCTAAGTTCTTGCTGGAAGCATCCCTGATTACTCTTATAAA
AAAGTATTTGGCTGCTGTTCATATTCTCTTTTTTATTTTTTCTTT
Right flanking sequence: Indices 597264 -- 597763
CAAGCGAAGCGAGCAGCAAGAGAAGATCGGTAGTAGAAGGTAACGAAATAGAGACTCAGAGAGAG
ATCAGAAGCGAAATTCGGCATAAGGCTGAACCCAGGTGACGCCTATTGTAGTGTAGCACCTGGGG
CCGCACGACTCAGGCAGGGCAGACTCTCTACCCGTGCGCGTGTCTATTTCGCTTTAGGAGGTATC
AGAACGGAGTTATGGGTAAATCCCTTTCGGATTTCTGCTAATTCTCTTCTTGTTGCACCATGTCC
AAGCTTGACGATAGCAGTGGAGCGCTGTCTGCGGCGGCTGTTGCTAAGGAAACACTCAAGGATCG
AGTGACCCAACTTGATGGCAAGGTCGACCATTTGGGCGGACAAGTGTAGACTATGGCAGAAAGGC
AGGAGAATCAGGAATCGTTGGTCACCAGACGCTCGCTAATGAGTACCGCGTCTTCCCAGTGAAGG
AGAGCCGTCTTCATGGGGCCTCAACGATCCCGGTGGCGATGTCCA
Found at i:610679 original size:13 final size:13
Alignment explanation
Indices: 610661--610687 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
610651 ATACTAGGCC
610661 ATCTGAAGCTGTA
1 ATCTGAAGCTGTA
610674 ATCTGAAGCTGTA
1 ATCTGAAGCTGTA
610687 A
1 A
610688 GTGGAAGCAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.15, G:0.22, T:0.30
Consensus pattern (13 bp):
ATCTGAAGCTGTA
Left flanking sequence: Indices 610161 -- 610660
TTTGAATCAATATCACTATCTTCGTGCTCGCTTATAGAATCCTAGATATCTTACCAGGGGTCCTA
AATATCAAATACCTGGGGGAATCCCCTACTTCTCCATTCCTTGTCATCTTGCCATATTGGAATCC
AGATATTGGAATTTCGTGTACCTATAAGATAAGAAAGGGGAAATCCTGTACCGAATCGTTGTCTC
TAAGCTAAGGCGGACCTGACCGTTCTAAACATCGATTTTGTAGTAAGTCAAGTGGTCCACGAAGA
GAAATCCTTCACGGGCCCACGATTGGCCGGAGATAGAAGACTAGTTATTACTTGGTTAGCTCTAC
TACTTGGTGGGCTCTTATACACTTGGCGGGCTCTACCCATTAAGTAAGATGGTCTTATGCCTGTA
AGATGGTTTAATGCGGTCTAATGCCCGCTTTAGAATACCTGCCAGAGCAGAGAAGACGCATTTAC
TTACTTATTGGTACTCCCCTGTAGGTGAAATACAAATACTAGGCC
Right flanking sequence: Indices 610688 -- 611187
GTGGAAGCAGTAGCTGGCTAGCTTGGTTACTTAGGAGCTTGTACTCCCCCCTGAAATACTACTGG
CAAGTCCATAAGAAAGTCAAGGGTTAACCTATAACTACTACAGAAATGGAAAGTTTACCCTTACT
ACTTAAACGAATCAAGGTGGGACCCTCCTTTACTAGAGCAGAGCTTATATACCTGGACCGCGTTC
TCAACTGTCTTTCTCAAGCCACCGGGGAGGAACTCCTAAAAGCAGTATGGGAATGGAGGGACTCG
ATGGAGCGAGATTGGAATGCCGTTTATCCTTCAGCTTGCAACACTCGAACACTGCTATCGAGCCT
ACTGATCTTGATTCATCTACTTGACTAAACCGGTCGGAGTGAGATAGAGATCTCGCCCATCGCCT
GAGACAGACAGATCTGCTTCATCTCTCAACAATTTCATATAGAAATAAATGGTAATCCGTGGGCT
AGAACCCGAAAACAGAAGCAGTTAACAACCCCGCAAAACAAAATC
Found at i:614500 original size:16 final size:16
Alignment explanation
Indices: 614479--614521 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
614469 TACTTCTTAT
614479 AGGGAATCAAAGCAAA
1 AGGGAATCAAAGCAAA
* *
614495 AGGGAATCATAGCAAT
1 AGGGAATCAAAGCAAA
*
614511 AGGGAGTCAAA
1 AGGGAATCAAA
614522 TCATATAGGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.49, C:0.12, G:0.28, T:0.12
Consensus pattern (16 bp):
AGGGAATCAAAGCAAA
Left flanking sequence: Indices 613979 -- 614478
TTTATGCTGAATCCTCATAGCAGGAGTTCGTATGAGACTATCGGCTCGGCTGAGCGAAGACGAAG
GAGAGCAACCGTGTAGCTAAGCGGATTGCGGGTATTAAATAGAAAAGGGCGGGGGCAGTTAGGAC
TGACCTTATACTTCCTTGCCTAACTGGAAGCTCTCCTAAGCTTTCTTTCTTTACTCTTTGCTCCT
AAGACTAATAAGAAGCAAGGATGGATTAGAAGCCATTCTATCTCTCAAGTGATAGCTATGAAAGA
GAAGGATGGGGAACCGTACGGTAGTTCATGACTGAGACTAAGCCAGCCGGTTCATCCGGGAAGAG
GATGAAGGAGGTACATATGGTAGTTAGGCGAGCTCCGTGAAGAGTGAGCACTGACTTTCATAAGG
AGTTGGTACATATGGTAGAACGGGTAGCGTTATGAGTGAGCACTGACTTACTAAACTGGAGAAGG
TACTAATGTACTCTAAGGTAGTGTATGAGAGCACGTACTTCTTAT
Right flanking sequence: Indices 614522 -- 615021
TCATATAGGGGAAAGTAAGGTAAGGGTAGGCTTTGGTTCATTGTTATTCAACCAGGTATTTATTG
CCTCGAAAGGGAGCTGCGTGAGCACTTTGACCCCTGAGCTTGGTTCAGAGTTTCAAAACTCCGTA
GAATTTCGAAAGCTAGAAGTTAGTTCAGACTAGTGATTCTGATTCCAAGTACTCATTATTGGGTT
TGGTCGTACCATGTGCCTGACCTTCCACTCATTTTTCTTAATTGAGACAGCGGACCCTGGGACTC
AACTTCTACAGGGAGGCAGCAAGACAGAGAGCAATTAGGCTCGAGATCGGGGGAATCGACTCCCG
AAATCAGAAAGAAAAGTCTCTAATAGCGGCCTTTCAGAGTCGTTGATCATGGTCGTAAGGTGGGC
TTGATCAAGGGCCTTCTTCTTCTGCTTATTTTGTATGCCCCTTCTTCCCCAACTGATTCGCCAAT
GGGGGCACTCCTGCCTTTACTCAATAAAAACCTAACGTTAAGTTT
Found at i:635124 original size:15 final size:15
Alignment explanation
Indices: 635104--635135 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
635094 CAGGGGCAGT
635104 AGTATAAAAACAAGA
1 AGTATAAAAACAAGA
*
635119 AGTATAAGAACAAGA
1 AGTATAAAAACAAGA
635134 AG
1 AG
635136 AAGAGGAGAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.62, C:0.06, G:0.19, T:0.12
Consensus pattern (15 bp):
AGTATAAAAACAAGA
Left flanking sequence: Indices 634604 -- 635103
GAGCGTCTTCCTACCTTTTGAAAGTCAGTTAATATACGAGTAGGCAATTCTCCTTTCCTGTGTGA
AGAATAAAGCTATGAGCACTGCATAAAATAAATAAGACTAGTTCGGGCCCCACTCTTGGTAATAG
GGTATTTATGGTCTTTTAGTGGAGACCTTCCTCTCCCGGTATGCACTCCCGTGCCTTGCTCTTCC
GTATTCTAACTCAGATTCATTGGAAACCCTTAGACTCGGCTTTGCTTTGTCTTACCGAATCCAAT
GTCTCTCAATCTTTCTCATTTTTGGGAACCTTAGTTCTTTTCTTCATGTCTGTATGCCCTGCGGT
CCCATGCTTTGTTCGAGATCGCATTGGATCTTAGACTTTCTCTGTGGTTCGGTTGACCGGGGTTC
CCATTAGCTTGGTGTGACCATGCCATGCGTAAAGGCTTTCTGTGGCATAGCTCTTCTCTCTTTGA
CCTGAGACTGGCATTTTTATTTTCTTTCCTAAGGCCAGGGGCAGT
Right flanking sequence: Indices 635136 -- 635635
AAGAGGAGAGGAATATAGGAACCGGGGTAATCGGTTGGTTCACGAAGAAAGCATCGTCTGCCCCC
TCTATCTCGTATCTCGCCCTTTAGCGGTCAGTTGGTAAGGAGATTTATAGGTCATCACCATTCCC
GCAGCCCTTTCAGTAAGCGAATCCGTAAGTGAATCAGTCATCGAGGAAAGCATATCAGATCAAGC
CCATTCCGTCGATGTAGTACAATCAGTTCTTTCTGTCGAGCGAGGGCGAGGTCCTCTTCTTTCCT
CAACCCCAGTGGGGAATCCATTCTTCCCTCAGCCGGTCAAATCGTATCAGCCGTTGAGGAAAAGC
CCTAATCCTTCTGCCGCATCCTTTTCTGCAGTTGCTGCCGTGCCTGTGTCGGGAGACAATTTCTT
TCCTTGAATGAGTTCCCTCCTCTCGCGGAGCAATTCCTTCTTTTTCTGTCTTTCCCGGTGTCTTC
GCATTGGCCTACCCTCTTATTGTTAGTGTGTTAGGTCCATTTCCC
Found at i:654445 original size:21 final size:22
Alignment explanation
Indices: 654405--654445 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
654395 TACAGACTTC
*
654405 AGGGATGAGCTACGAAAAGCGA
1 AGGGATAAGCTACGAAAAGCGA
654427 AGGGATAAGCTAC-AAAAGC
1 AGGGATAAGCTACGAAAAGC
654446 AAAGTCCCTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 6 0.33
22 12 0.67
ACGTcount: A:0.44, C:0.15, G:0.32, T:0.10
Consensus pattern (22 bp):
AGGGATAAGCTACGAAAAGCGA
Left flanking sequence: Indices 653905 -- 654404
TTCATAACCGGTCCTGGTCCTATTGAATAAGATGTGGGACCTTTTATCTCGAGAGATGGGGCCAT
AGGATCGAATCAGCTCTTAGGACAAAGATGCCATCTCGTGCACATGAATCGGGCTCAGAATACGC
AGTGTGAAGGGCTAACCTTTGAAGGGCAACTAGTGAAGATGCCGATAATCCTTTGTACCTAAGGG
CTAGATAGACAGATGCCTTCCTATCTTCCTTCTTTACTGGACCAAGTTGATGCGGAAAAAGGACT
GGCATCTCTATAACAGAAAAGACTTTATCTTTATAAGTTGAAAGGAAAGCCTACTCTTAGATCGA
AAAGAAGTGATTGTTTACAAGACAGAAAAGGGTTAGCAGCTTATCGTCACTTGCCCTAAGGCAGT
TAAATAACTCCTAGCACAGGTTACTGACTCGACTGCCCGCACTGGCTGGACTGTACGGCATACCT
GTGTCAGAAGAATGACTAGCTTATACTTGTTAAACTACAGACTTC
Right flanking sequence: Indices 654446 -- 654945
AAAGTCCCTTCGGAGGAGCTTAATTCTTTTCTTTATCACCGTAAATGAAATGTAAATGAAATTCC
TTCCGCCTTACACGGACTTCAAAGAGTACCTAAGGCGTATTGAATTCTCTTATATAGATTATAAC
ACTCGGAAGAAAGGAGGCAATCAAGCATGCGACCTAAAGACTAGTGGTAGACTTTACTATCAAGA
ACTCTTAAGGCGACCTTCTTTTCTTCTATTTTATTCCTCGTTGGCCTGCAGCTGATTCAATAGCA
GCTCTAATGTCAGAGCTTATAATTAGGCTTCTTTACCTTACTAGACTAGCTTCTCATCCGTGAAT
GAAAAAGCAATCTCCCGAACGAACAGCTGGCATCAGTAAAGGGATTGACCCCCAAAAGCACTCAC
TATGCAAGCTGGGAGGGATTCCCCCGATTTCCCTAAGGCATGACATCGAATAGGCTTTCCTTGAA
TTAGCTGTTGGCCTATCTGGTCTTTCTTCTCTGCCCACCACCCAT
Done.