Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_069591
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 469769
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
File 7 of 7
Found at i:460329 original size:19 final size:20
Alignment explanation
Indices: 460294--460345 Score: 97
Period size: 19 Copynumber: 2.6 Consensus size: 20
460284 TCTCTCCCGT
460294 CTCCCCCGCCCCTGGCGGGC
1 CTCCCCCGCCCCTGGCGGGC
460314 CTCCCCCGCCCC-GGCGGGC
1 CTCCCCCGCCCCTGGCGGGC
460333 CTCCCCCGCCCCT
1 CTCCCCCGCCCCT
460346 ACCCTATAGA
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 19 0.61
20 12 0.39
ACGTcount: A:0.00, C:0.65, G:0.25, T:0.10
Consensus pattern (20 bp):
CTCCCCCGCCCCTGGCGGGC
Left flanking sequence: Indices 459794 -- 460293
TTGGAAGAGGGGAAGAGGGAGGCAGCGCCGGATTCCCACTGTCAGTCATTCGATTGATCCCATCG
TTGATCCCATCGTTGATTATATACGTAATACGAATTCTATACTCCACGTAATACGAATGCCCGCG
AGCTATTCCAACGAATCTTCTCCCTCGGCCTCCCCCCCCTCCAGATAGAGTTCATAATTCTAGAT
AGGGCCCCATATATATAGAGGCGCATAAATGACCCCGGGCCTCCCGGGGTCAGCGCCTAATGACC
TCGACTCTATATGGTTTAGTTGGCCCCCCAACTTACAATCACTTTAGAGCCCCCCTCCCCCTCCC
TGAACTATCTTATCTATCTGGGCGGCCCCCTCCCTGAACTATCTTATCTATCTGGGATCCATATA
TGGGGCGCCCTATAGAGATCTGACCGATAGAGAAGATATAGAGGAGGGGGGGTCGGCCATATCTT
ATCTATATATAGGGGGCGGCGTTGGGCATTTATGCTCTCTCCCGT
Right flanking sequence: Indices 460346 -- 460845
ACCCTATAGATCTATCTGGGCTGGGGGCCCTGAATGAGACTATAGGCCAACGCCCTATCGGGACC
CCTATCTATATAGGCCCCCCAGAGAGATAAGATCTCTAGGGGGGGTGGGGGGGGGGGGCCGCCCA
CCTACTATCTGATTGGGGGGTTGGGGGGGGGCGGCTATGGCTATATATAGATAGAGAGTGGGCCC
CTATCTAGAATTCTATCTATGGAGGGGGGGCCTAATAGAGTCTAGATGGCCCCCCATATAGATAT
ACAGGGCCCCGCCCCTATATATCTATTCTCGCTATATCTAGTGCCCCTATATCTCTTCTCTATCT
GGAGGGCCTCCTACCTAGATATGGGGTCGATAGGGCCCACCCCTATATCTCTATCCGGAGAGCCC
CCCCCCTGAACTCTCTTTTCTATCTGGAGGAGGAGGCCATACCATATAGAAAAGAGAGTTCAGGG
GGGGCCCCGCCCCTATATCTCGTAGGAGGGGGAGGGCGAGGGTGC
Found at i:462233 original size:60 final size:60
Alignment explanation
Indices: 462140--462268 Score: 258
Period size: 60 Copynumber: 2.1 Consensus size: 60
462130 CCGAGGTTTA
462140 TTTCTTTATGGCTATATAAAGATTCTTTATTTCTTTCTTAGATATAGATAGAGAGAGGGC
1 TTTCTTTATGGCTATATAAAGATTCTTTATTTCTTTCTTAGATATAGATAGAGAGAGGGC
462200 TTTCTTTATGGCTATATAAAGATTCTTTATTTCTTTCTTAGATATAGATAGAGAGAGGGC
1 TTTCTTTATGGCTATATAAAGATTCTTTATTTCTTTCTTAGATATAGATAGAGAGAGGGC
462260 TTTCTTTAT
1 TTTCTTTAT
462269 TTCTTTATGG
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
60 69 1.00
ACGTcount: A:0.27, C:0.10, G:0.17, T:0.46
Consensus pattern (60 bp):
TTTCTTTATGGCTATATAAAGATTCTTTATTTCTTTCTTAGATATAGATAGAGAGAGGGC
Left flanking sequence: Indices 461640 -- 462139
AAATAACTAGGGCAGGCCATCTATCCCATCTCTCCCATCTCTATATATAGGGGAGGGGGCAGCTA
CCGGGCTATTGTATCCAAAGGAGTGATACAACCAGACCAGATAAGTAAGCTCCCTCCTCCGCAAC
TAGAGATATAGATGCCATATGGATAGAGTGAGTGGGGCCGTGCCGCCCTATATAGATAGATATGA
TGTTGATATATGGCCACCGAACTCTCCGAAGCAACTATGGATATAGGGGCCCCCTATATTCTAAT
TGGCGTATAACGTATATGATTCGAATTAATACAACCCGTATATGGTCTATATATAGATCTAGTGC
CATCCATATAGACCATATACACGGCTGGCTCTCTAGGCACTACCCATATTCGGCCACCTATATCT
ATGGTATGGCAGATGGGCCCGGGGCCATATCTAGAGAGGCCCCATATATAGATAGGTAGGGGGGG
GGGTTGTCAACTACAGATAGGATTGGGGTGATAGGCCGAGGTTTA
Right flanking sequence: Indices 462269 -- 462768
TTCTTTATGGCTATATTTCTTTATTTCTATAGCCCCCTATATAGATCTATATGGCATCTATAGTC
TATAGTTCTCTCGGGAGGTATAGTATATATATATATAGATAGTGGGTCGCAGAAAGTCGAGATCT
ATAGGCCCAGATCGAGATAGAGATAGGCCCAGATAGAATAGAGCCGAGCCTCTCTATTAAGTTGG
GTCGGCTCTGAGAAAGAGAAGGGCTATACTCTCCCAAGCCAATATTCTGTATTATCGTGGAGGTT
CGGAAGGGCGGGGCGATAGGGGCGGGCTAATAAGATAATAGTGCCCGGGTCGGGCCGCGGGGTCG
GGGGGGAGGACCCTCTCTACGCTGCTATGTGTTGAGGGTGGGGCCGGGGAAGCCGGGGAGGCGAG
AATGGGACCCCGGCGCCTTCACCCCGACCCCGTCCGCCTTTCTCTTCCGAACTCCGGCACCCCCA
CCTCGCTTCCTCCACGATTTGATTGGGGATACACGACACGATTTG
Found at i:462298 original size:16 final size:16
Alignment explanation
Indices: 462260--462299 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
462250 GAGAGAGGGC
*
462260 TTTCTTTATTTCTTTA
1 TTTCTATATTTCTTTA
**
462276 TGGCTATATTTCTTTA
1 TTTCTATATTTCTTTA
462292 TTTCTATA
1 TTTCTATA
462300 GCCCCCTATA
Statistics
Matches: 19, Mismatches: 5, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.17, C:0.12, G:0.05, T:0.65
Consensus pattern (16 bp):
TTTCTATATTTCTTTA
Left flanking sequence: Indices 461760 -- 462259
CCTCCGCAACTAGAGATATAGATGCCATATGGATAGAGTGAGTGGGGCCGTGCCGCCCTATATAG
ATAGATATGATGTTGATATATGGCCACCGAACTCTCCGAAGCAACTATGGATATAGGGGCCCCCT
ATATTCTAATTGGCGTATAACGTATATGATTCGAATTAATACAACCCGTATATGGTCTATATATA
GATCTAGTGCCATCCATATAGACCATATACACGGCTGGCTCTCTAGGCACTACCCATATTCGGCC
ACCTATATCTATGGTATGGCAGATGGGCCCGGGGCCATATCTAGAGAGGCCCCATATATAGATAG
GTAGGGGGGGGGGTTGTCAACTACAGATAGGATTGGGGTGATAGGCCGAGGTTTATTTCTTTATG
GCTATATAAAGATTCTTTATTTCTTTCTTAGATATAGATAGAGAGAGGGCTTTCTTTATGGCTAT
ATAAAGATTCTTTATTTCTTTCTTAGATATAGATAGAGAGAGGGC
Right flanking sequence: Indices 462300 -- 462799
GCCCCCTATATAGATCTATATGGCATCTATAGTCTATAGTTCTCTCGGGAGGTATAGTATATATA
TATATAGATAGTGGGTCGCAGAAAGTCGAGATCTATAGGCCCAGATCGAGATAGAGATAGGCCCA
GATAGAATAGAGCCGAGCCTCTCTATTAAGTTGGGTCGGCTCTGAGAAAGAGAAGGGCTATACTC
TCCCAAGCCAATATTCTGTATTATCGTGGAGGTTCGGAAGGGCGGGGCGATAGGGGCGGGCTAAT
AAGATAATAGTGCCCGGGTCGGGCCGCGGGGTCGGGGGGGAGGACCCTCTCTACGCTGCTATGTG
TTGAGGGTGGGGCCGGGGAAGCCGGGGAGGCGAGAATGGGACCCCGGCGCCTTCACCCCGACCCC
GTCCGCCTTTCTCTTCCGAACTCCGGCACCCCCACCTCGCTTCCTCCACGATTTGATTGGGGATA
CACGACACGATTTGATTGGGGGTGGCTCGGCTATCTAGATAGATG
Found at i:462427 original size:22 final size:21
Alignment explanation
Indices: 462399--462441 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 21
462389 GTCGAGATCT
*
462399 ATAGGCCCAGATCGAGATAGAG
1 ATAGGCCCAGATAGA-ATAGAG
462421 ATAGGCCCAGATAGAATAGAG
1 ATAGGCCCAGATAGAATAGAG
462442 CCGAGCCTCT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 6 0.30
22 14 0.70
ACGTcount: A:0.40, C:0.16, G:0.30, T:0.14
Consensus pattern (21 bp):
ATAGGCCCAGATAGAATAGAG
Left flanking sequence: Indices 461899 -- 462398
TTGGCGTATAACGTATATGATTCGAATTAATACAACCCGTATATGGTCTATATATAGATCTAGTG
CCATCCATATAGACCATATACACGGCTGGCTCTCTAGGCACTACCCATATTCGGCCACCTATATC
TATGGTATGGCAGATGGGCCCGGGGCCATATCTAGAGAGGCCCCATATATAGATAGGTAGGGGGG
GGGGTTGTCAACTACAGATAGGATTGGGGTGATAGGCCGAGGTTTATTTCTTTATGGCTATATAA
AGATTCTTTATTTCTTTCTTAGATATAGATAGAGAGAGGGCTTTCTTTATGGCTATATAAAGATT
CTTTATTTCTTTCTTAGATATAGATAGAGAGAGGGCTTTCTTTATTTCTTTATGGCTATATTTCT
TTATTTCTATAGCCCCCTATATAGATCTATATGGCATCTATAGTCTATAGTTCTCTCGGGAGGTA
TAGTATATATATATATAGATAGTGGGTCGCAGAAAGTCGAGATCT
Right flanking sequence: Indices 462442 -- 462941
CCGAGCCTCTCTATTAAGTTGGGTCGGCTCTGAGAAAGAGAAGGGCTATACTCTCCCAAGCCAAT
ATTCTGTATTATCGTGGAGGTTCGGAAGGGCGGGGCGATAGGGGCGGGCTAATAAGATAATAGTG
CCCGGGTCGGGCCGCGGGGTCGGGGGGGAGGACCCTCTCTACGCTGCTATGTGTTGAGGGTGGGG
CCGGGGAAGCCGGGGAGGCGAGAATGGGACCCCGGCGCCTTCACCCCGACCCCGTCCGCCTTTCT
CTTCCGAACTCCGGCACCCCCACCTCGCTTCCTCCACGATTTGATTGGGGATACACGACACGATT
TGATTGGGGGTGGCTCGGCTATCTAGATAGATGGATAGAGAGAGGCGGCCCCCCCCCCACCCCCC
CCCTAGATCTCTTATATGGGCCCATCCCATCTCATCCCATCCCCTATAGAGGGGAGGGCGCCGAC
GGGACGGACTATCTATATGCTATGCTCGGGAGGCCGAGCCATAGT
Found at i:463852 original size:6 final size:6
Alignment explanation
Indices: 463841--463870 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
463831 AGTTCTATAT
463841 AGAGGG AGAGGG AGAGGG AGAGGG AGAGGG
1 AGAGGG AGAGGG AGAGGG AGAGGG AGAGGG
463871 CGAGCCATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.33, C:0.00, G:0.67, T:0.00
Consensus pattern (6 bp):
AGAGGG
Left flanking sequence: Indices 463341 -- 463840
TAGGGGACCCTCCCCCCCTGCCTGCCCCTGCTTTATTAGTTTAGTAGAGGCCCCAGGCCCATATA
CCGAACAGAGGCGCCCAGAGTTCTAGAGAGGAGTCCCTCCCCCCAGCCCCTCTCTCTCTATGGTG
AGTATAGGCGTCGGGGGCACCCCATAGTTCAGATTAGATAGGGGCCCTGACTATAGAGAGTCTAG
TCCCCTCCCCCCAGTTCTGCCCATATAGTTAGATAGGGGATCCTCCCATATAGTTAGATAGGGGC
CCCAACCCCCCGCCCTATAGTTCTATCTGGCAAAGATATAGTTCATAGTTGGTCCCCGTGATCGT
GAACCACATCTCTAGTTCTATATAGAGGGCCAACTCTAGATATGGCCCACCCCCACCACATCGTG
TATCGTGACAGCTAGCTTCATAATGCCATGCCCCCATAGATATGGCGTGTGACAGATCTACCACA
TCGTGAACCACATCGTGATCAGTTCAGTTCAGTTCAGTTCTATAT
Right flanking sequence: Indices 463871 -- 464370
CGAGCCATATAGATCTATAGGCTGAATACTTCATACGAGGAGTGCCATATCTATGTATAGGGGCT
CCAACTACCACCCATATAGTTAGATGATTGGTTCCAGATAGAGAGAGAGGGCGACCCAGAGAGTT
AGATAGGCCTTCCAGATAGAGAGAGAGGGCCACCCATATGTCTAGATAGGCCTTCCTCCATCGAA
TAAAGTGAGTTGAGTTGGGGGGCCAACTCTCTATATGGCCCTATCTAGCCCTATCTAGATATGGC
AGGGGGGGGGGGCCCATATCTATATATAGGCCAGATAGAGAGAGAGGGCGACAGAAGAGTTGATA
CACCGACCCATATCTATAGATAGGCCTTGATACACCGCCCCTCTATTCTTAATACTCGATACACG
GAGTACAGAAGATATAGTGATAGTTAGATAGGCCTTGATACACCGCCCCTCTATTCTTAATATCC
GCCCCTCTATTCTTACTTAATATAGATGGGATAGGCGGGCATAGA
Found at i:463994 original size:22 final size:22
Alignment explanation
Indices: 463969--464036 Score: 66
Period size: 22 Copynumber: 3.1 Consensus size: 22
463959 ATGATTGGTT
*
463969 CCAGATAGAGAGAGAGGGCGAC
1 CCAGATAGAGAGAGAGGGCCAC
* ** * **
463991 CCAGAGAGTTAGATA-GGCCTT
1 CCAGATAGAGAGAGAGGGCCAC
464012 CCAGATAGAGAGAGAGGGCCAC
1 CCAGATAGAGAGAGAGGGCCAC
464034 CCA
1 CCA
464037 TATGTCTAGA
Statistics
Matches: 32, Mismatches: 13, Indels: 2
0.68 0.28 0.04
Matches are distributed among these distances:
21 14 0.44
22 18 0.56
ACGTcount: A:0.34, C:0.22, G:0.34, T:0.10
Consensus pattern (22 bp):
CCAGATAGAGAGAGAGGGCCAC
Left flanking sequence: Indices 463469 -- 463968
TGAGTATAGGCGTCGGGGGCACCCCATAGTTCAGATTAGATAGGGGCCCTGACTATAGAGAGTCT
AGTCCCCTCCCCCCAGTTCTGCCCATATAGTTAGATAGGGGATCCTCCCATATAGTTAGATAGGG
GCCCCAACCCCCCGCCCTATAGTTCTATCTGGCAAAGATATAGTTCATAGTTGGTCCCCGTGATC
GTGAACCACATCTCTAGTTCTATATAGAGGGCCAACTCTAGATATGGCCCACCCCCACCACATCG
TGTATCGTGACAGCTAGCTTCATAATGCCATGCCCCCATAGATATGGCGTGTGACAGATCTACCA
CATCGTGAACCACATCGTGATCAGTTCAGTTCAGTTCAGTTCTATATAGAGGGAGAGGGAGAGGG
AGAGGGAGAGGGCGAGCCATATAGATCTATAGGCTGAATACTTCATACGAGGAGTGCCATATCTA
TGTATAGGGGCTCCAACTACCACCCATATAGTTAGATGATTGGTT
Right flanking sequence: Indices 464037 -- 464536
TATGTCTAGATAGGCCTTCCTCCATCGAATAAAGTGAGTTGAGTTGGGGGGCCAACTCTCTATAT
GGCCCTATCTAGCCCTATCTAGATATGGCAGGGGGGGGGGGCCCATATCTATATATAGGCCAGAT
AGAGAGAGAGGGCGACAGAAGAGTTGATACACCGACCCATATCTATAGATAGGCCTTGATACACC
GCCCCTCTATTCTTAATACTCGATACACGGAGTACAGAAGATATAGTGATAGTTAGATAGGCCTT
GATACACCGCCCCTCTATTCTTAATATCCGCCCCTCTATTCTTACTTAATATAGATGGGATAGGC
GGGCATAGAGAAGAGAGCCAGGTAGCGCGAGACGAGACGAGATATATGTCCTGTCCGTGTCCGTT
CGTTCGCCAGATCAATCTATAGGGCGTATAGAATTCAGATCAGATCTATAGGGGGCGGGGGGGCC
TCTCTAGTTGGGGAGTTGGATAGAGTTGGGGGATAGTTGTATTGG
Found at i:464022 original size:43 final size:43
Alignment explanation
Indices: 463967--464056 Score: 137
Period size: 43 Copynumber: 2.1 Consensus size: 43
463957 AGATGATTGG
*
463967 TTCCAGATAGAGAGAGAGGGCGACCCAGAGAGT-TAGATAGGCC
1 TTCCAGATAGAGAGAGAGGGCCACCCAGA-AGTCTAGATAGGCC
* *
464010 TTCCAGATAGAGAGAGAGGGCCACCCATATGTCTAGATAGGCC
1 TTCCAGATAGAGAGAGAGGGCCACCCAGAAGTCTAGATAGGCC
464053 TTCC
1 TTCC
464057 TCCATCGAAT
Statistics
Matches: 43, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
42 2 0.05
43 41 0.95
ACGTcount: A:0.30, C:0.22, G:0.30, T:0.18
Consensus pattern (43 bp):
TTCCAGATAGAGAGAGAGGGCCACCCAGAAGTCTAGATAGGCC
Left flanking sequence: Indices 463467 -- 463966
GGTGAGTATAGGCGTCGGGGGCACCCCATAGTTCAGATTAGATAGGGGCCCTGACTATAGAGAGT
CTAGTCCCCTCCCCCCAGTTCTGCCCATATAGTTAGATAGGGGATCCTCCCATATAGTTAGATAG
GGGCCCCAACCCCCCGCCCTATAGTTCTATCTGGCAAAGATATAGTTCATAGTTGGTCCCCGTGA
TCGTGAACCACATCTCTAGTTCTATATAGAGGGCCAACTCTAGATATGGCCCACCCCCACCACAT
CGTGTATCGTGACAGCTAGCTTCATAATGCCATGCCCCCATAGATATGGCGTGTGACAGATCTAC
CACATCGTGAACCACATCGTGATCAGTTCAGTTCAGTTCAGTTCTATATAGAGGGAGAGGGAGAG
GGAGAGGGAGAGGGCGAGCCATATAGATCTATAGGCTGAATACTTCATACGAGGAGTGCCATATC
TATGTATAGGGGCTCCAACTACCACCCATATAGTTAGATGATTGG
Right flanking sequence: Indices 464057 -- 464556
TCCATCGAATAAAGTGAGTTGAGTTGGGGGGCCAACTCTCTATATGGCCCTATCTAGCCCTATCT
AGATATGGCAGGGGGGGGGGGCCCATATCTATATATAGGCCAGATAGAGAGAGAGGGCGACAGAA
GAGTTGATACACCGACCCATATCTATAGATAGGCCTTGATACACCGCCCCTCTATTCTTAATACT
CGATACACGGAGTACAGAAGATATAGTGATAGTTAGATAGGCCTTGATACACCGCCCCTCTATTC
TTAATATCCGCCCCTCTATTCTTACTTAATATAGATGGGATAGGCGGGCATAGAGAAGAGAGCCA
GGTAGCGCGAGACGAGACGAGATATATGTCCTGTCCGTGTCCGTTCGTTCGCCAGATCAATCTAT
AGGGCGTATAGAATTCAGATCAGATCTATAGGGGGCGGGGGGGCCTCTCTAGTTGGGGAGTTGGA
TAGAGTTGGGGGATAGTTGTATTGGACCATATATCTCTACTACCT
Found at i:464631 original size:5 final size:5
Alignment explanation
Indices: 464621--464658 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
464611 CAATACTAAT
464621 GGATG GGATG GGATG GGATG GGATG GGATG GGATG GGA
1 GGATG GGATG GGATG GGATG GGATG GGATG GGATG GGA
464659 GTCTGCTATC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.21, C:0.00, G:0.61, T:0.18
Consensus pattern (5 bp):
GGATG
Left flanking sequence: Indices 464121 -- 464620
TAGATATGGCAGGGGGGGGGGGCCCATATCTATATATAGGCCAGATAGAGAGAGAGGGCGACAGA
AGAGTTGATACACCGACCCATATCTATAGATAGGCCTTGATACACCGCCCCTCTATTCTTAATAC
TCGATACACGGAGTACAGAAGATATAGTGATAGTTAGATAGGCCTTGATACACCGCCCCTCTATT
CTTAATATCCGCCCCTCTATTCTTACTTAATATAGATGGGATAGGCGGGCATAGAGAAGAGAGCC
AGGTAGCGCGAGACGAGACGAGATATATGTCCTGTCCGTGTCCGTTCGTTCGCCAGATCAATCTA
TAGGGCGTATAGAATTCAGATCAGATCTATAGGGGGCGGGGGGGCCTCTCTAGTTGGGGAGTTGG
ATAGAGTTGGGGGATAGTTGTATTGGACCATATATCTCTACTACCTCGACTGTAAAGGAATTGTA
GTCGCGCCTACACAATACCACAATACCCACAATACCAATACTAAT
Right flanking sequence: Indices 464659 -- 465158
GTCTGCTATCCATCTAGATCTAGACTGGCGGGATGGAACGTTCAGGGTTAGGGTAGGGCTGAGAT
CCGCATAGAGAATAGAGATCTGGGCGGGGGAGATCTAAGATCTGAGAGTCTGGACCCGATGGCGG
CTCTATATGATATGGGGGGCGATCTGGAATGGATGGAAATCTATTTGAGTCTAGTCTAGTCTGCT
ATCCATCTAGATCTGGAGGATCTGGACTGGCGGTTTGGTTTGTATTACATATATAATAGAGATCT
AAGATCTGATGCTATCCATCTAGATCTAGACATTTGGATGGGGATGGCCCCATCCTATATAGATA
TAGAGGGTTGGGGCCATCGTCTATTCTATCTCTCTATATAGCCATCCCCATCTCTCTAGTTGGGG
TTGGGGCATGGGCTCGATCGGGTGCTGTGTTTGCGTCGCCCCTCATCTAGATCTTGGTGTATCGG
CAGACTATCAGATCTAAGAGCGCCAGATAGATATAGAGGGCATAT
Found at i:465233 original size:20 final size:20
Alignment explanation
Indices: 465208--465262 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 20
465198 ATATGGAGTG
465208 GCCTCTTTCTTCCAATATCT
1 GCCTCTTTCTTCCAATATCT
465228 GCCTCTTTCTTCTCCCAATATCT
1 GCCTCTTTC-T-T-CCAATATCT
* *
465251 GTCTCTTCCTTC
1 GCCTCTTTCTTC
465263 TCCCAACCCA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
20 10 0.33
21 2 0.07
22 2 0.07
23 16 0.53
ACGTcount: A:0.11, C:0.38, G:0.05, T:0.45
Consensus pattern (20 bp):
GCCTCTTTCTTCCAATATCT
Left flanking sequence: Indices 464708 -- 465207
AGGGTAGGGCTGAGATCCGCATAGAGAATAGAGATCTGGGCGGGGGAGATCTAAGATCTGAGAGT
CTGGACCCGATGGCGGCTCTATATGATATGGGGGGCGATCTGGAATGGATGGAAATCTATTTGAG
TCTAGTCTAGTCTGCTATCCATCTAGATCTGGAGGATCTGGACTGGCGGTTTGGTTTGTATTACA
TATATAATAGAGATCTAAGATCTGATGCTATCCATCTAGATCTAGACATTTGGATGGGGATGGCC
CCATCCTATATAGATATAGAGGGTTGGGGCCATCGTCTATTCTATCTCTCTATATAGCCATCCCC
ATCTCTCTAGTTGGGGTTGGGGCATGGGCTCGATCGGGTGCTGTGTTTGCGTCGCCCCTCATCTA
GATCTTGGTGTATCGGCAGACTATCAGATCTAAGAGCGCCAGATAGATATAGAGGGCATATAGAA
TACAGATCAGATCAGATATCGAGTTATAGAACTCTATATGGAGTG
Right flanking sequence: Indices 465263 -- 465762
TCCCAACCCAACCCAATAGACTAGACGGTGGTGGGTTAGCTGTTTGTGTGGAGTGGGAGTCTCTA
TATTCATATCAATATTGGTTTGGTAGGTTCAATGCCTACTGTATCGGAAAGAATCATACTCAAAA
AACGAGTTTGATCCTGGCTCAGAACGAACGCTAGCTATATGCTCAACACATGCAAGTCGAACGTT
GCTCCCGTGCTTCCGACCATATAGATAGTTCAGGGCCCCCCTCCCGAACTCTGATTGGGATTGGA
AGGCCGGGCGTAGATAGATGAGTCGAACAGTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGT
GGGAATCTGCCGAACAGTTCGGGCCAAATCCTGAATTCCATTCACCATTCTCATCCAGATGGAGA
AAGAAAGAGATGATATTGCCTGCCTGCCATATAGATCCATATCTGGCCTGGCCATATAGATCTGA
ATGAGACTATCTGGGGTGTTGAATGTAATGAAAGCTGCTCCACTA
Found at i:465245 original size:23 final size:23
Alignment explanation
Indices: 465214--465268 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
465204 AGTGGCCTCT
* *
465214 TTCTTCCAATATCTGCCTCTTTC
1 TTCTCCCAATATCTGCCTCTTCC
*
465237 TTCTCCCAATATCTGTCTCTTCC
1 TTCTCCCAATATCTGCCTCTTCC
465260 TTCTCCCAA
1 TTCTCCCAA
465269 CCCAACCCAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.15, C:0.38, G:0.04, T:0.44
Consensus pattern (23 bp):
TTCTCCCAATATCTGCCTCTTCC
Left flanking sequence: Indices 464714 -- 465213
GGGCTGAGATCCGCATAGAGAATAGAGATCTGGGCGGGGGAGATCTAAGATCTGAGAGTCTGGAC
CCGATGGCGGCTCTATATGATATGGGGGGCGATCTGGAATGGATGGAAATCTATTTGAGTCTAGT
CTAGTCTGCTATCCATCTAGATCTGGAGGATCTGGACTGGCGGTTTGGTTTGTATTACATATATA
ATAGAGATCTAAGATCTGATGCTATCCATCTAGATCTAGACATTTGGATGGGGATGGCCCCATCC
TATATAGATATAGAGGGTTGGGGCCATCGTCTATTCTATCTCTCTATATAGCCATCCCCATCTCT
CTAGTTGGGGTTGGGGCATGGGCTCGATCGGGTGCTGTGTTTGCGTCGCCCCTCATCTAGATCTT
GGTGTATCGGCAGACTATCAGATCTAAGAGCGCCAGATAGATATAGAGGGCATATAGAATACAGA
TCAGATCAGATATCGAGTTATAGAACTCTATATGGAGTGGCCTCT
Right flanking sequence: Indices 465269 -- 465768
CCCAACCCAATAGACTAGACGGTGGTGGGTTAGCTGTTTGTGTGGAGTGGGAGTCTCTATATTCA
TATCAATATTGGTTTGGTAGGTTCAATGCCTACTGTATCGGAAAGAATCATACTCAAAAAACGAG
TTTGATCCTGGCTCAGAACGAACGCTAGCTATATGCTCAACACATGCAAGTCGAACGTTGCTCCC
GTGCTTCCGACCATATAGATAGTTCAGGGCCCCCCTCCCGAACTCTGATTGGGATTGGAAGGCCG
GGCGTAGATAGATGAGTCGAACAGTTGAGAACAAAGTGGCGAACGGGTGCGTAACGCGTGGGAAT
CTGCCGAACAGTTCGGGCCAAATCCTGAATTCCATTCACCATTCTCATCCAGATGGAGAAAGAAA
GAGATGATATTGCCTGCCTGCCATATAGATCCATATCTGGCCTGGCCATATAGATCTGAATGAGA
CTATCTGGGGTGTTGAATGTAATGAAAGCTGCTCCACTATATAGA
Found at i:466987 original size:5 final size:5
Alignment explanation
Indices: 466977--467012 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
466967 CACCTATATA
466977 GATCT GATCT GATCT GATCT GATCT GATCT GATCT G
1 GATCT GATCT GATCT GATCT GATCT GATCT GATCT G
467013 CGGGCGGCCC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.19, C:0.19, G:0.22, T:0.39
Consensus pattern (5 bp):
GATCT
Left flanking sequence: Indices 466477 -- 466976
AATTGACGGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAGAACCTT
ACCAGCCCTTGACATATGAACGACGTGTGCCTGTCCCTAACGGGATGGTGTGAAGCGTATGGTTC
ATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATGTTTGGTTAAGTCCTATAACGAG
CGAAACCCTCGTCTTGTGTTGCTGGTCTCTATCGCTCCCCATATATAGATAGCTCCACCGGCTCC
CATATATGGGTCGGGTTTCTCGCTCTATATAGATTCTAGATCCCCCATAATCTATAGAGTAGAGG
GGGCCGTTCAGAATTCTAGATAGGGCCGACTCCCGACTCTCTATAGCCTAGCCTATAGTTCTCTA
TATGGGAGAGCAGAGCAGTGATTTATAGATCTATATCTATATCTATTCGGGGCTCGATCTGAGTG
AAGAGAAATGTCACCAGCAGTGAAAGCCCACCGCCCACCTATATA
Right flanking sequence: Indices 467013 -- 467512
CGGGCGGCCCGGGCCCCCCAGATCGGGCCCCCCTCTCTATATTAATCTAGGGGGCGAGGGATCGC
CCTCTCTCCCATATCTATATAGGGGGGGCCCTCATCGGGGGGCCTCCCAGATATATGATGTATGG
GCTCTCTCGCCCATCGGGGCCAGATAGTTCGATGTATGGCCCCGGCTCATAGATATAGATTTTAA
TATAGGGAGGGGGTCTGGGGCTGGGGACCGGGTGGCGCGATTGATGACACTCCAACCAACCGTAC
CACTCAGTGCTGCACTCACAAGAGACTGCCAGTGATATGCTGGAGGAAGGTGGGGATGACGTCAA
GTCCGCATGGCCCTTATGGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAAGGCCG
TAAGGCGGAGCAAATCCAGAAAGGTTGCCTCAGTTCGGATTGTTCTCTGCAACTCGAGAACATGA
AGTTGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATA
Found at i:468618 original size:14 final size:14
Alignment explanation
Indices: 468599--468633 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
468589 TAGATAGGGC
**
468599 TGGATGGATCTGTG
1 TGGATGGATAGGTG
468613 TGGATGGATAGGTG
1 TGGATGGATAGGTG
468627 TGGATGG
1 TGGATGG
468634 CCCTGAACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.17, C:0.03, G:0.49, T:0.31
Consensus pattern (14 bp):
TGGATGGATAGGTG
Left flanking sequence: Indices 468099 -- 468598
AACTATCCGTGCCAATGATATAGAGTAGAGATGGGGTTCTAGGGTAGGGGGATATAGATAGGGGG
CCCCCCCCTAGAGAGATATGGGTAGATATGGCAGATAGATAAGATAAGATATAGAGAGAGGGGGA
GAGGGGGGCCCTATAGAGAGAACTCCCATATAGAGAGAGGGGGGACCCCCCTCCCCTCTCTCTCT
ATCTGCACTCTCTCTCTATATCTCGACTATCTACAATCTGCCATCTCTATATAGGGGGGAGGGGC
GGGGGATAATAGATAGGGGGCTACGCCATATAGAGAGAGGGGCCCCCTATCTATAGATATGGCGC
CCCGGGTGAGGGCCCCCTATATAGAGATGGGGCCCCCCCGGCACTCCCCCCCCCTCTAGAGAACT
ATATCTCATCTTATCGATTGGTTGGACTTGATAGACCAGATAGAGAGTTCTAGATAGGGCTGGAG
GGGGGATGGGGATGGATGCCTCCGATCAGATATATTAGATAGGGC
Right flanking sequence: Indices 468634 -- 469133
CCCTGAACTATCTTATCTGCCACCCACCCATCCCATCCCCAGATCGATCGATCGATCAATCTATT
AGATAGGGCGATAGGGCTGGCCCCGCCCCATCTATTCTGGATGGGGATGGATCCGAGAGGATGGC
GATGGTGGATGGATGCCCGAGAAAGATAAGGGACCAGATAGAGTGGCTGGAGGGGGGATGGATCC
GAGAGGATGGCGATGGTGGATGGATGCCCGAGAAAGATAAGGGACCAGATAGAGTGGCTGGAGGG
GGGATGGGGATGGATAGGTGGGGATGGATAGGTAGGTGGGGATGGATAGGTGGGGATGGATAGGT
AGGTGGGTGGTAGGTGGGTATGGATAGGTGTATCCGTGGATGATCATGCCGGATCGGGGCCTGAC
CTGCCCTGTAAATATTGATTTATTTGAGGCCGAGGCCCATGAGGTTCGAATCCTCATTCATCTCC
GACCGGGCACTACGGCAAGACGTGAAACACCCGATCCCATTCCGA
Found at i:468917 original size:14 final size:14
Alignment explanation
Indices: 468898--468988 Score: 103
Period size: 14 Copynumber: 6.1 Consensus size: 14
468888 GGAGGGGGGA
468898 TGGGGATGGATAGG
1 TGGGGATGGATAGG
468912 TGGGGATGGATAGGTAGG
1 TGGGGATGG--A--TAGG
468930 TGGGGATGGATAGG
1 TGGGGATGGATAGG
468944 TGGGGATGGATAGG
1 TGGGGATGGATAGG
*
468958 TAGGTGGGTGG-TAGG
1 T-GG-GGATGGATAGG
*
468973 TGGGTATGGATAGG
1 TGGGGATGGATAGG
468987 TG
1 TG
468989 TATCCGTGGA
Statistics
Matches: 67, Mismatches: 3, Indels: 14
0.80 0.04 0.17
Matches are distributed among these distances:
13 4 0.06
14 36 0.54
15 7 0.10
16 7 0.10
18 13 0.19
ACGTcount: A:0.20, C:0.00, G:0.56, T:0.24
Consensus pattern (14 bp):
TGGGGATGGATAGG
Left flanking sequence: Indices 468398 -- 468897
GGGCCCCCTATCTATAGATATGGCGCCCCGGGTGAGGGCCCCCTATATAGAGATGGGGCCCCCCC
GGCACTCCCCCCCCCTCTAGAGAACTATATCTCATCTTATCGATTGGTTGGACTTGATAGACCAG
ATAGAGAGTTCTAGATAGGGCTGGAGGGGGGATGGGGATGGATGCCTCCGATCAGATATATTAGA
TAGGGCTGGATGGATCTGTGTGGATGGATAGGTGTGGATGGCCCTGAACTATCTTATCTGCCACC
CACCCATCCCATCCCCAGATCGATCGATCGATCAATCTATTAGATAGGGCGATAGGGCTGGCCCC
GCCCCATCTATTCTGGATGGGGATGGATCCGAGAGGATGGCGATGGTGGATGGATGCCCGAGAAA
GATAAGGGACCAGATAGAGTGGCTGGAGGGGGGATGGATCCGAGAGGATGGCGATGGTGGATGGA
TGCCCGAGAAAGATAAGGGACCAGATAGAGTGGCTGGAGGGGGGA
Right flanking sequence: Indices 468989 -- 469488
TATCCGTGGATGATCATGCCGGATCGGGGCCTGACCTGCCCTGTAAATATTGATTTATTTGAGGC
CGAGGCCCATGAGGTTCGAATCCTCATTCATCTCCGACCGGGCACTACGGCAAGACGTGAAACAC
CCGATCCCATTCCGACCTCGATCTGTGAAACCGTCTTGCGCCATATGTACTGATTACTCGGGAGA
CATGGTCAAAGCCCGGACTAGACTCTAGATTAGAGTCTATAGTAGAGTAGGCCGACAGATCTCTC
CTCTCTATATACGTCCGTCCTATTGAATCTACCGGGATCTACCCATCTAATCTAGAGTCTCTACC
CATCTAATCCAGAGTCTCTACCCATCTGTCTGTATCTCTAGTCAGATAAGAAGGGTCCCTAGTCT
CTAGTCCCTAGTCTCTATAGTCGCCTACTCCCCTATATCTATATGGGAGCTCTGTCCCCCTATCT
ATATATCTCTCTCTAGTTGCCTATTCGGGTCCGGTCCCTCGGACC
Found at i:468920 original size:76 final size:76
Alignment explanation
Indices: 468741--468900 Score: 320
Period size: 76 Copynumber: 2.1 Consensus size: 76
468731 TATTCTGGAT
468741 GGGGATGGATCCGAGAGGATGGCGATGGTGGATGGATGCCCGAGAAAGATAAGGGACCAGATAGA
1 GGGGATGGATCCGAGAGGATGGCGATGGTGGATGGATGCCCGAGAAAGATAAGGGACCAGATAGA
468806 GTGGCTGGAGG
66 GTGGCTGGAGG
468817 GGGGATGGATCCGAGAGGATGGCGATGGTGGATGGATGCCCGAGAAAGATAAGGGACCAGATAGA
1 GGGGATGGATCCGAGAGGATGGCGATGGTGGATGGATGCCCGAGAAAGATAAGGGACCAGATAGA
468882 GTGGCTGGAGG
66 GTGGCTGGAGG
468893 GGGGATGG
1 GGGGATGG
468901 GGATGGATAG
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 84 1.00
ACGTcount: A:0.27, C:0.11, G:0.47, T:0.14
Consensus pattern (76 bp):
GGGGATGGATCCGAGAGGATGGCGATGGTGGATGGATGCCCGAGAAAGATAAGGGACCAGATAGA
GTGGCTGGAGG
Left flanking sequence: Indices 468241 -- 468740
ATAGAGAGAACTCCCATATAGAGAGAGGGGGGACCCCCCTCCCCTCTCTCTCTATCTGCACTCTC
TCTCTATATCTCGACTATCTACAATCTGCCATCTCTATATAGGGGGGAGGGGCGGGGGATAATAG
ATAGGGGGCTACGCCATATAGAGAGAGGGGCCCCCTATCTATAGATATGGCGCCCCGGGTGAGGG
CCCCCTATATAGAGATGGGGCCCCCCCGGCACTCCCCCCCCCTCTAGAGAACTATATCTCATCTT
ATCGATTGGTTGGACTTGATAGACCAGATAGAGAGTTCTAGATAGGGCTGGAGGGGGGATGGGGA
TGGATGCCTCCGATCAGATATATTAGATAGGGCTGGATGGATCTGTGTGGATGGATAGGTGTGGA
TGGCCCTGAACTATCTTATCTGCCACCCACCCATCCCATCCCCAGATCGATCGATCGATCAATCT
ATTAGATAGGGCGATAGGGCTGGCCCCGCCCCATCTATTCTGGAT
Right flanking sequence: Indices 468901 -- 469400
GGATGGATAGGTGGGGATGGATAGGTAGGTGGGGATGGATAGGTGGGGATGGATAGGTAGGTGGG
TGGTAGGTGGGTATGGATAGGTGTATCCGTGGATGATCATGCCGGATCGGGGCCTGACCTGCCCT
GTAAATATTGATTTATTTGAGGCCGAGGCCCATGAGGTTCGAATCCTCATTCATCTCCGACCGGG
CACTACGGCAAGACGTGAAACACCCGATCCCATTCCGACCTCGATCTGTGAAACCGTCTTGCGCC
ATATGTACTGATTACTCGGGAGACATGGTCAAAGCCCGGACTAGACTCTAGATTAGAGTCTATAG
TAGAGTAGGCCGACAGATCTCTCCTCTCTATATACGTCCGTCCTATTGAATCTACCGGGATCTAC
CCATCTAATCTAGAGTCTCTACCCATCTAATCCAGAGTCTCTACCCATCTGTCTGTATCTCTAGT
CAGATAAGAAGGGTCCCTAGTCTCTAGTCCCTAGTCTCTATAGTC
Found at i:468929 original size:18 final size:18
Alignment explanation
Indices: 468908--468965 Score: 88
Period size: 18 Copynumber: 3.4 Consensus size: 18
468898 TGGGGATGGA
468908 TAGGTGGGGATGGATAGG
1 TAGGTGGGGATGGATAGG
468926 TAGGTGGGGATGG--A--
1 TAGGTGGGGATGGATAGG
468940 TAGGTGGGGATGGATAGG
1 TAGGTGGGGATGGATAGG
468958 TAGGTGGG
1 TAGGTGGG
468966 TGGTAGGTGG
Statistics
Matches: 36, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
14 13 0.36
16 2 0.06
18 21 0.58
ACGTcount: A:0.21, C:0.00, G:0.57, T:0.22
Consensus pattern (18 bp):
TAGGTGGGGATGGATAGG
Left flanking sequence: Indices 468408 -- 468907
TCTATAGATATGGCGCCCCGGGTGAGGGCCCCCTATATAGAGATGGGGCCCCCCCGGCACTCCCC
CCCCCTCTAGAGAACTATATCTCATCTTATCGATTGGTTGGACTTGATAGACCAGATAGAGAGTT
CTAGATAGGGCTGGAGGGGGGATGGGGATGGATGCCTCCGATCAGATATATTAGATAGGGCTGGA
TGGATCTGTGTGGATGGATAGGTGTGGATGGCCCTGAACTATCTTATCTGCCACCCACCCATCCC
ATCCCCAGATCGATCGATCGATCAATCTATTAGATAGGGCGATAGGGCTGGCCCCGCCCCATCTA
TTCTGGATGGGGATGGATCCGAGAGGATGGCGATGGTGGATGGATGCCCGAGAAAGATAAGGGAC
CAGATAGAGTGGCTGGAGGGGGGATGGATCCGAGAGGATGGCGATGGTGGATGGATGCCCGAGAA
AGATAAGGGACCAGATAGAGTGGCTGGAGGGGGGATGGGGATGGA
Right flanking sequence: Indices 468966 -- 469465
TGGTAGGTGGGTATGGATAGGTGTATCCGTGGATGATCATGCCGGATCGGGGCCTGACCTGCCCT
GTAAATATTGATTTATTTGAGGCCGAGGCCCATGAGGTTCGAATCCTCATTCATCTCCGACCGGG
CACTACGGCAAGACGTGAAACACCCGATCCCATTCCGACCTCGATCTGTGAAACCGTCTTGCGCC
ATATGTACTGATTACTCGGGAGACATGGTCAAAGCCCGGACTAGACTCTAGATTAGAGTCTATAG
TAGAGTAGGCCGACAGATCTCTCCTCTCTATATACGTCCGTCCTATTGAATCTACCGGGATCTAC
CCATCTAATCTAGAGTCTCTACCCATCTAATCCAGAGTCTCTACCCATCTGTCTGTATCTCTAGT
CAGATAAGAAGGGTCCCTAGTCTCTAGTCCCTAGTCTCTATAGTCGCCTACTCCCCTATATCTAT
ATGGGAGCTCTGTCCCCCTATCTATATATCTCTCTCTAGTTGCCT
Found at i:468934 original size:32 final size:32
Alignment explanation
Indices: 468898--468987 Score: 150
Period size: 32 Copynumber: 2.9 Consensus size: 32
468888 GGAGGGGGGA
468898 TGGGGATGGATAGGTGGGGATGGATAGGTAGG
1 TGGGGATGGATAGGTGGGGATGGATAGGTAGG
468930 TGGGGATGGATAGGTGGGGATGGATAGGTAGG
1 TGGGGATGGATAGGTGGGGATGGATAGGTAGG
*
468962 T-GGG-TGG-TAGGTGGGTATGGATAGGT
1 TGGGGATGGATAGGTGGGGATGGATAGGT
468988 GTATCCGTGG
Statistics
Matches: 57, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
29 18 0.32
30 3 0.05
31 3 0.05
32 33 0.58
ACGTcount: A:0.20, C:0.00, G:0.56, T:0.24
Consensus pattern (32 bp):
TGGGGATGGATAGGTGGGGATGGATAGGTAGG
Left flanking sequence: Indices 468398 -- 468897
GGGCCCCCTATCTATAGATATGGCGCCCCGGGTGAGGGCCCCCTATATAGAGATGGGGCCCCCCC
GGCACTCCCCCCCCCTCTAGAGAACTATATCTCATCTTATCGATTGGTTGGACTTGATAGACCAG
ATAGAGAGTTCTAGATAGGGCTGGAGGGGGGATGGGGATGGATGCCTCCGATCAGATATATTAGA
TAGGGCTGGATGGATCTGTGTGGATGGATAGGTGTGGATGGCCCTGAACTATCTTATCTGCCACC
CACCCATCCCATCCCCAGATCGATCGATCGATCAATCTATTAGATAGGGCGATAGGGCTGGCCCC
GCCCCATCTATTCTGGATGGGGATGGATCCGAGAGGATGGCGATGGTGGATGGATGCCCGAGAAA
GATAAGGGACCAGATAGAGTGGCTGGAGGGGGGATGGATCCGAGAGGATGGCGATGGTGGATGGA
TGCCCGAGAAAGATAAGGGACCAGATAGAGTGGCTGGAGGGGGGA
Right flanking sequence: Indices 468988 -- 469487
GTATCCGTGGATGATCATGCCGGATCGGGGCCTGACCTGCCCTGTAAATATTGATTTATTTGAGG
CCGAGGCCCATGAGGTTCGAATCCTCATTCATCTCCGACCGGGCACTACGGCAAGACGTGAAACA
CCCGATCCCATTCCGACCTCGATCTGTGAAACCGTCTTGCGCCATATGTACTGATTACTCGGGAG
ACATGGTCAAAGCCCGGACTAGACTCTAGATTAGAGTCTATAGTAGAGTAGGCCGACAGATCTCT
CCTCTCTATATACGTCCGTCCTATTGAATCTACCGGGATCTACCCATCTAATCTAGAGTCTCTAC
CCATCTAATCCAGAGTCTCTACCCATCTGTCTGTATCTCTAGTCAGATAAGAAGGGTCCCTAGTC
TCTAGTCCCTAGTCTCTATAGTCGCCTACTCCCCTATATCTATATGGGAGCTCTGTCCCCCTATC
TATATATCTCTCTCTAGTTGCCTATTCGGGTCCGGTCCCTCGGAC
Found at i:469313 original size:22 final size:22
Alignment explanation
Indices: 469286--469340 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
469276 TCTACCGGGA
*
469286 TCTACCCATCTAATCTAGAGTC
1 TCTACCCATCTAATCCAGAGTC
469308 TCTACCCATCTAATCCAGAGTC
1 TCTACCCATCTAATCCAGAGTC
469330 TCTACCCATCT
1 TCTACCCATCT
469341 GTCTGTATCT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.25, C:0.36, G:0.07, T:0.31
Consensus pattern (22 bp):
TCTACCCATCTAATCCAGAGTC
Left flanking sequence: Indices 468786 -- 469285
AAGATAAGGGACCAGATAGAGTGGCTGGAGGGGGGATGGATCCGAGAGGATGGCGATGGTGGATG
GATGCCCGAGAAAGATAAGGGACCAGATAGAGTGGCTGGAGGGGGGATGGGGATGGATAGGTGGG
GATGGATAGGTAGGTGGGGATGGATAGGTGGGGATGGATAGGTAGGTGGGTGGTAGGTGGGTATG
GATAGGTGTATCCGTGGATGATCATGCCGGATCGGGGCCTGACCTGCCCTGTAAATATTGATTTA
TTTGAGGCCGAGGCCCATGAGGTTCGAATCCTCATTCATCTCCGACCGGGCACTACGGCAAGACG
TGAAACACCCGATCCCATTCCGACCTCGATCTGTGAAACCGTCTTGCGCCATATGTACTGATTAC
TCGGGAGACATGGTCAAAGCCCGGACTAGACTCTAGATTAGAGTCTATAGTAGAGTAGGCCGACA
GATCTCTCCTCTCTATATACGTCCGTCCTATTGAATCTACCGGGA
Right flanking sequence: Indices 469341 -- 469769
GTCTGTATCTCTAGTCAGATAAGAAGGGTCCCTAGTCTCTAGTCCCTAGTCTCTATAGTCGCCTA
CTCCCCTATATCTATATGGGAGCTCTGTCCCCCTATCTATATATCTCTCTCTAGTTGCCTATTCG
GGTCCGGTCCCTCGGACCTATACCTATACCGACTAGACTAGAGCCCATAGTAGAGTAGGCCACTC
GACCGGACCCCCTACCCCTACTCTCTATAGGGATAGGGCCCTTTCTATTCCCATATCTAGACTAT
AGATATAGAGGGGGGGTCGCCGGCCCACCCGGAGAGGAGAGCCCCGCATGCCTGTCTCGATCAAC
GGTTTCTATTCCATAGAGTCCTGACTATAGAGACATACTATCGACTATTGAGAGTAGTCCGGCCC
CGTCTCGATCAACGGTTTCTATTCTAGAGAGTCCTGACC
Found at i:469387 original size:14 final size:14
Alignment explanation
Indices: 469368--469395 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
469358 GATAAGAAGG
469368 GTCCCTAGTCTCTA
1 GTCCCTAGTCTCTA
469382 GTCCCTAGTCTCTA
1 GTCCCTAGTCTCTA
469396 TAGTCGCCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.36, G:0.14, T:0.36
Consensus pattern (14 bp):
GTCCCTAGTCTCTA
Left flanking sequence: Indices 468868 -- 469367
AGGGACCAGATAGAGTGGCTGGAGGGGGGATGGGGATGGATAGGTGGGGATGGATAGGTAGGTGG
GGATGGATAGGTGGGGATGGATAGGTAGGTGGGTGGTAGGTGGGTATGGATAGGTGTATCCGTGG
ATGATCATGCCGGATCGGGGCCTGACCTGCCCTGTAAATATTGATTTATTTGAGGCCGAGGCCCA
TGAGGTTCGAATCCTCATTCATCTCCGACCGGGCACTACGGCAAGACGTGAAACACCCGATCCCA
TTCCGACCTCGATCTGTGAAACCGTCTTGCGCCATATGTACTGATTACTCGGGAGACATGGTCAA
AGCCCGGACTAGACTCTAGATTAGAGTCTATAGTAGAGTAGGCCGACAGATCTCTCCTCTCTATA
TACGTCCGTCCTATTGAATCTACCGGGATCTACCCATCTAATCTAGAGTCTCTACCCATCTAATC
CAGAGTCTCTACCCATCTGTCTGTATCTCTAGTCAGATAAGAAGG
Right flanking sequence: Indices 469396 -- 469769
TAGTCGCCTACTCCCCTATATCTATATGGGAGCTCTGTCCCCCTATCTATATATCTCTCTCTAGT
TGCCTATTCGGGTCCGGTCCCTCGGACCTATACCTATACCGACTAGACTAGAGCCCATAGTAGAG
TAGGCCACTCGACCGGACCCCCTACCCCTACTCTCTATAGGGATAGGGCCCTTTCTATTCCCATA
TCTAGACTATAGATATAGAGGGGGGGTCGCCGGCCCACCCGGAGAGGAGAGCCCCGCATGCCTGT
CTCGATCAACGGTTTCTATTCCATAGAGTCCTGACTATAGAGACATACTATCGACTATTGAGAGT
AGTCCGGCCCCGTCTCGATCAACGGTTTCTATTCTAGAGAGTCCTGACC
Done.