123.fas.2.7.7.80.10.50.500.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_069591
Parameters: 2 7 7 80 10 50 500
Length:  469769

Tables:   1   2   3   4   5   6   7   

This is table  6  of  7  ( 738 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390716--390751	18	2.1	16	90	10	54	36	0	33	30	1.58
392463--392496	17	2.0	17	94	0	59	26	26	11	35	1.91
392533--392571	17	2.3	17	90	0	60	25	25	7	41	1.82
392425--392579	75	2.0	77	91	7	251	29	23	18	29	1.98
393491--393551	29	2.1	29	100	0	122	22	24	26	26	2.00
393501--393559	29	2.1	27	84	9	75	30	18	23	27	1.98
394300--394337	2	19.0	2	88	0	58	47	2	2	47	1.30
394748--394783	17	2.1	17	100	0	72	22	22	22	33	1.97
395206--395249	22	2.0	22	86	0	61	27	20	36	15	1.93
396024--396053	4	7.5	4	92	0	51	20	30	0	50	1.49
397367--397400	17	2.0	17	100	0	68	17	41	0	41	1.50
397860--397895	5	7.2	5	93	0	63	38	22	0	38	1.54
400092--400127	16	2.2	17	95	5	65	22	36	8	33	1.84
402700--402784	4	21.2	4	82	0	89	50	0	30	18	1.47
402706--402793	28	3.1	28	93	0	149	50	0	32	17	1.46
402726--402792	4	16.8	4	84	0	53	50	0	35	13	1.42
402799--402824	5	5.2	5	100	0	52	19	0	57	23	1.40
403129--403158	7	4.3	7	91	0	51	26	13	30	30	1.94
403478--403517	15	2.7	15	88	3	64	25	22	32	20	1.98
403641--403711	26	2.7	26	100	0	142	12	42	15	29	1.84
403927--403951	12	2.1	12	100	0	50	28	40	16	16	1.89
404640--404681	21	2.0	21	100	0	84	28	19	33	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
405995--406046	22	2.4	22	96	0	95	17	32	21	28	1.96
405989--406055	22	2.5	30	64	35	78	17	32	19	29	1.95
406291--406321	4	7.8	4	100	0	62	25	22	0	51	1.48
406869--406893	6	4.2	6	100	0	50	36	0	48	16	1.46
407586--407905	18	17.7	18	71	14	176	47	4	33	15	1.65
407586--407902	6	53.5	6	68	13	142	47	4	32	15	1.65
407598--407705	2	55.0	2	70	7	60	47	3	38	10	1.55
407743--407904	16	9.9	16	70	11	78	49	3	31	16	1.61
407745--407868	8	14.6	8	71	11	86	49	2	31	16	1.59
408402--408445	18	2.4	18	96	0	79	29	50	4	15	1.64
408413--408451	18	2.2	18	90	0	60	35	38	10	15	1.81
409035--409091	32	1.9	29	83	16	73	29	38	14	17	1.89
409239--409287	4	12.0	4	86	4	71	24	28	0	46	1.53
410138--410248	5	22.2	5	100	0	222	40	0	0	59	0.97
410594--410635	21	2.0	21	90	9	68	14	33	19	33	1.91
412165--412191	14	1.9	14	100	0	54	3	74	0	22	0.98
412159--412191	14	2.3	15	84	10	50	3	72	0	24	0.98
412128--412364	130	1.8	130	99	0	467	13	39	23	23	1.90
412295--412321	14	1.9	14	100	0	54	3	74	0	22	0.98
412288--412322	16	2.2	16	89	0	52	2	71	0	25	1.00
414192--414254	5	12.6	5	100	0	126	0	20	41	38	1.53
415348--415375	7	4.0	7	100	0	56	14	14	57	14	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416152--416224	39	1.9	38	81	10	87	16	16	45	21	1.85
419361--419389	13	2.2	13	100	0	58	6	41	20	31	1.79
422414--422463	25	2.0	25	92	0	82	32	26	22	20	1.98
422407--422464	25	2.4	23	81	13	71	32	24	25	17	1.96
424025--424079	27	2.0	28	96	3	103	27	25	32	14	1.95
424151--424182	15	2.1	15	94	0	55	34	28	15	21	1.94
424515--424549	18	1.9	18	94	0	61	2	88	2	5	0.68
424816--424875	5	12.0	5	100	0	120	40	0	20	40	1.52
425501--425529	14	2.1	14	100	0	58	6	20	13	58	1.58
425501--425534	14	2.6	13	90	9	52	5	26	11	55	1.58
425886--425959	2	37.5	2	73	2	51	50	2	36	10	1.52
425874--426136	12	21.8	12	67	14	103	45	4	34	14	1.66
425939--426067	39	3.4	39	73	18	112	43	5	35	15	1.70
425964--426138	36	5.4	31	73	16	122	44	4	35	15	1.67
425884--426136	64	3.9	64	72	16	193	45	4	34	14	1.66
426033--426090	21	2.9	21	87	5	75	43	8	31	17	1.79
426073--426137	2	32.5	2	79	0	58	49	1	38	10	1.47
425879--426136	6	41.7	6	67	18	86	45	4	34	14	1.66
426830--426856	6	4.5	6	100	0	54	51	0	18	29	1.46
426958--427005	12	3.9	12	79	15	53	45	4	31	18	1.68
427739--427797	20	3.0	20	97	0	109	32	5	47	15	1.67
430922--430977	28	2.1	25	83	9	67	23	28	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431048--431077	14	2.1	14	93	0	51	46	3	6	43	1.46
431038--431087	24	2.1	24	96	0	91	44	6	8	42	1.58
431032--431097	34	1.9	34	96	0	123	42	7	9	40	1.65
431032--431099	10	7.4	10	87	12	94	42	7	10	39	1.67
431038--431107	20	3.3	20	84	8	68	42	7	10	40	1.66
431211--431247	4	9.2	4	87	0	56	21	24	0	54	1.45
432094--432164	28	2.5	28	81	4	90	22	0	46	30	1.52
432757--432808	12	4.3	12	100	0	104	17	32	7	42	1.77
433048--433093	4	11.5	4	90	0	65	17	32	0	50	1.47
433048--433095	12	4.0	12	88	0	78	16	33	0	50	1.46
433048--433093	20	2.3	20	96	0	83	17	32	0	50	1.47
435364--435497	8	16.1	8	77	7	133	49	0	32	17	1.52
435362--435495	4	33.2	4	77	1	88	49	0	32	17	1.53
435369--435506	69	2.0	69	88	0	204	47	2	31	19	1.62
437304--437337	17	2.0	17	94	0	59	20	58	2	17	1.51
437711--437790	28	2.9	28	92	0	133	20	31	18	30	1.96
438281--438335	13	4.5	13	82	17	82	29	34	12	23	1.92
438282--438325	22	2.0	22	100	0	88	31	31	13	22	1.93
438570--438596	4	6.8	4	100	0	54	25	25	0	48	1.52
440993--441115	5	24.4	5	94	4	122	31	0	28	39	1.57
441174--441232	5	11.8	5	100	0	118	20	20	18	40	1.91
441901--441972	5	14.4	5	100	0	144	40	0	19	40	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443288--443335	13	3.8	13	97	2	89	16	35	39	8	1.79
443887--443923	10	3.9	10	86	13	60	21	27	0	51	1.48
443881--443920	18	2.2	18	90	0	62	27	22	2	47	1.64
443887--443923	18	2.1	18	100	0	74	21	27	0	51	1.48
444678--444741	21	3.1	21	86	8	105	37	17	17	28	1.92
445316--445366	18	2.8	18	96	0	93	31	33	25	9	1.88
446297--446357	6	11.5	6	71	25	57	40	9	0	49	1.36
446285--446350	10	6.6	10	94	0	114	42	7	1	48	1.40
446972--447004	16	2.0	17	94	5	59	42	6	27	24	1.78
447043--447093	26	2.0	26	100	0	102	35	23	15	25	1.94
447578--447611	17	2.0	17	100	0	68	17	35	5	41	1.74
448073--448115	22	2.0	22	100	0	86	32	9	39	18	1.83
448228--448273	14	3.4	14	79	8	60	45	4	10	39	1.59
448290--448461	17	10.5	17	70	18	132	33	19	9	38	1.83
448272--448436	46	3.6	46	84	10	230	33	18	9	38	1.83
448356--448420	13	5.4	13	73	17	68	35	16	12	35	1.87
448264--448461	101	2.0	99	81	8	231	33	18	9	38	1.82
448416--448479	4	15.8	4	86	3	83	28	21	3	46	1.66
449634--449724	5	18.2	5	100	0	182	20	19	39	19	1.93
449804--449863	18	3.3	18	97	0	111	26	35	11	26	1.91
451111--451152	22	1.9	22	90	0	66	19	50	4	26	1.67
451577--451644	19	3.4	19	72	20	66	22	27	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451565--451644	43	1.9	41	92	5	133	22	28	20	28	1.98
451627--451718	27	3.2	29	80	15	104	20	26	26	27	1.99
451627--451704	32	2.7	29	86	11	106	21	23	26	28	1.99
452759--452796	6	6.2	6	82	17	51	44	2	18	34	1.64
456674--456713	20	2.0	20	95	0	71	25	40	12	22	1.89
457952--457997	4	11.5	4	100	0	92	26	23	0	50	1.50
458969--458993	5	5.0	5	100	0	50	0	40	20	40	1.52
459728--459822	41	2.3	41	98	0	181	27	26	38	7	1.83
459847--459875	12	2.4	12	100	0	58	17	27	17	37	1.92
460110--460174	34	1.9	34	100	0	130	15	38	15	30	1.88

Tables:   1   2   3   4   5   6   7