123.fas.2.7.7.80.10.50.500.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_069591
Parameters: 2 7 7 80 10 50 500
Length:  469769

Tables:   1   2   3   4   5   6   7   

This is table  5  of  7  ( 738 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308847--308929	38	2.3	36	88	12	118	24	30	24	21	1.99
309568--309600	14	2.4	14	100	0	66	33	24	6	36	1.80
310537--310586	8	6.2	8	90	0	82	50	0	16	34	1.45
310932--310974	20	2.2	20	100	0	86	27	25	23	23	2.00
313126--313160	5	7.0	5	100	0	70	20	60	0	20	1.37
314102--314131	10	3.0	10	100	0	60	10	0	60	30	1.30
314470--314505	13	2.8	13	91	0	63	27	16	16	38	1.90
314406--314498	32	2.8	31	77	17	96	34	18	15	32	1.92
314495--314531	19	1.9	19	100	0	74	45	16	10	27	1.80
314470--314538	13	4.7	14	77	20	61	34	15	14	34	1.89
315873--315898	6	4.3	6	100	0	52	30	38	0	30	1.58
316437--316589	6	26.0	6	70	9	82	15	33	1	48	1.57
316452--316585	2	66.5	2	74	1	70	14	35	1	48	1.54
316922--316985	28	2.3	28	100	0	128	23	25	18	32	1.97
316922--316995	28	2.6	28	93	0	103	24	24	20	31	1.98
317791--317824	10	3.4	10	95	0	59	23	20	35	20	1.96
318073--318104	16	2.0	16	100	0	64	18	18	43	18	1.88
320931--320983	24	2.2	24	100	0	106	11	18	50	18	1.76
321600--321641	11	3.8	11	81	12	50	11	85	0	2	0.68
321600--321635	11	3.2	11	92	4	54	11	86	0	2	0.68
321603--321638	18	2.0	17	89	10	54	8	88	0	2	0.59
322248--322298	25	2.2	24	86	10	70	19	13	39	27	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322248--322291	23	2.0	22	82	8	54	20	15	36	27	1.93
322841--322881	1	41.0	1	85	0	55	2	0	92	4	0.44
322841--322881	13	3.2	13	93	6	66	2	0	92	4	0.44
324818--324872	27	2.0	27	100	0	110	25	7	32	34	1.83
325888--325921	5	6.8	5	100	0	68	38	20	0	41	1.53
327489--327565	12	6.3	12	80	8	84	49	0	32	18	1.48
327490--327547	6	9.5	6	76	10	55	50	0	27	22	1.50
327590--327635	17	2.7	17	100	0	92	43	4	26	26	1.73
327654--327690	7	5.4	7	81	18	51	35	10	27	27	1.90
327654--327694	20	2.0	20	100	0	82	36	9	24	29	1.87
328060--328089	15	2.0	15	93	0	51	36	6	43	13	1.70
328831--328866	2	18.5	2	94	5	65	50	0	0	50	1.00
328883--328924	21	2.1	21	86	8	61	9	30	40	19	1.83
329529--329563	13	2.8	13	91	8	56	14	22	48	14	1.79
329797--329851	13	3.9	13	82	17	74	32	7	43	16	1.75
329801--329855	17	3.5	17	80	19	82	36	5	40	18	1.74
329782--329856	30	2.5	31	91	4	125	34	9	37	18	1.83
330419--330458	20	2.0	20	100	0	80	30	10	30	30	1.90
331202--331300	46	2.1	46	98	1	189	27	25	25	22	2.00
331366--331415	26	2.1	25	85	14	70	18	32	38	12	1.87
332309--332349	20	2.0	20	95	0	73	31	21	34	12	1.91
332740--332826	26	3.3	26	100	0	174	27	12	25	34	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333166--333247	5	16.4	5	100	0	164	59	0	40	0	0.97
333252--333326	5	15.0	5	100	0	150	20	0	60	20	1.37
333770--333803	18	1.9	18	94	5	61	41	26	8	23	1.83
335058--335090	12	2.8	12	100	0	66	51	0	30	18	1.46
335562--335603	22	1.9	22	100	0	84	23	26	16	33	1.96
338649--338718	26	2.7	25	86	4	95	31	24	25	18	1.98
339102--339161	12	4.8	12	78	8	57	50	0	31	18	1.47
339098--339152	4	13.8	4	84	0	65	50	0	29	20	1.48
339188--339283	32	3.0	32	100	0	192	28	18	21	31	1.97
339310--339340	4	7.8	4	100	0	62	25	22	0	51	1.48
339346--339409	32	2.1	30	86	11	87	29	18	17	34	1.94
339333--339410	32	2.5	30	74	12	75	28	20	14	37	1.91
339565--339613	25	2.0	25	100	0	98	24	26	24	24	2.00
339922--339952	6	5.2	6	100	0	62	51	0	32	16	1.44
340769--340811	20	2.2	20	100	0	86	23	39	4	32	1.75
343319--343343	11	2.3	11	100	0	50	0	32	52	16	1.44
345252--345307	5	11.2	5	98	0	85	41	19	25	14	1.89
346126--346181	5	11.2	5	100	0	112	21	19	39	19	1.93
347787--347817	16	1.9	16	100	0	62	32	48	6	12	1.67
348175--348222	21	2.2	22	89	10	73	25	14	27	33	1.94
348605--348679	5	15.0	5	100	0	150	20	20	0	60	1.37
352033--352072	10	4.0	10	93	0	71	32	30	7	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352724--352760	5	7.4	5	100	0	74	40	18	0	40	1.51
355572--355598	14	1.9	14	100	0	54	3	74	0	22	0.98
356335--356486	18	9.1	18	73	15	146	22	27	1	48	1.62
356373--356442	28	2.5	28	100	0	140	21	28	2	47	1.65
356430--356474	23	1.9	24	95	4	83	24	26	2	46	1.64
356788--356930	54	2.9	47	80	14	187	20	36	20	22	1.95
356806--356914	54	2.0	53	94	1	191	19	39	21	20	1.93
357518--357554	14	2.6	14	86	0	56	43	5	5	45	1.49
358404--358465	5	12.4	5	100	0	124	0	0	59	40	0.97
359046--359075	5	6.0	5	92	0	51	20	36	40	3	1.69
359140--359190	6	8.5	6	100	0	102	50	0	17	31	1.46
359988--360045	21	2.8	21	75	0	71	13	25	24	36	1.92
360741--360767	4	6.8	4	100	0	54	51	0	22	25	1.48
361982--362019	2	19.0	2	88	0	58	47	2	2	47	1.30
362841--362883	21	2.0	21	100	0	86	32	20	23	23	1.98
363078--363162	5	17.0	5	100	0	170	40	20	0	40	1.52
363452--363538	12	6.5	12	69	21	57	13	36	2	47	1.56
363418--363564	69	2.1	69	94	0	276	17	33	4	45	1.67
365270--365315	24	1.9	24	82	8	58	34	6	30	28	1.82
365706--365749	6	7.3	6	100	0	88	50	0	15	34	1.45
366012--366052	13	3.0	14	92	7	75	34	43	14	7	1.73
367154--367241	25	3.5	25	95	1	149	44	4	31	19	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367239--367321	20	4.3	20	74	11	75	46	3	30	19	1.66
367257--367317	32	1.9	32	89	0	95	49	1	29	19	1.58
367156--367323	18	9.3	18	68	13	87	45	4	31	19	1.69
367832--367857	4	6.5	4	100	0	52	50	0	26	23	1.50
368284--368319	13	2.8	13	100	0	72	38	16	13	30	1.88
368333--368472	66	2.1	66	100	0	280	23	26	29	20	1.99
368463--368512	13	3.8	13	94	2	82	34	16	16	34	1.90
369101--369165	5	13.0	5	100	0	130	20	0	40	40	1.52
372100--372191	25	3.8	25	92	7	147	19	31	3	45	1.66
372873--372899	14	1.9	14	100	0	54	14	25	29	29	1.95
374576--374626	20	2.5	20	83	0	66	50	0	31	17	1.46
374578--374629	4	13.0	4	83	0	50	50	0	32	17	1.47
374580--374626	8	5.9	8	87	0	67	51	0	34	14	1.43
376476--376532	28	2.0	28	93	0	96	35	3	49	12	1.58
377261--377423	73	2.4	66	82	11	197	25	21	32	20	1.98
377792--377850	13	4.5	13	91	0	100	20	49	15	15	1.80
378100--378141	14	3.0	14	85	0	66	42	7	7	42	1.59
378102--378135	16	2.1	16	88	0	50	44	5	5	44	1.52
378574--378675	53	1.9	53	89	2	150	17	34	26	21	1.96
382878--382980	29	3.7	29	72	7	104	22	18	31	28	1.97
382900--382988	28	3.2	28	70	9	92	24	17	25	31	1.97
383096--383134	4	9.8	4	94	0	69	23	25	0	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384105--384204	30	3.3	30	97	0	182	33	22	27	18	1.96
384616--384644	15	1.9	15	100	0	58	6	27	27	37	1.82
385435--385467	6	5.5	6	92	0	57	30	39	0	30	1.57
385974--386010	6	6.2	6	100	0	74	32	51	0	16	1.45
387253--387300	5	9.6	5	100	0	96	0	0	62	37	0.95
388100--388145	24	1.9	24	90	0	74	43	6	8	41	1.61
388100--388151	16	3.4	16	78	10	63	42	7	7	42	1.62
388207--388236	15	2.0	15	100	0	60	33	13	13	40	1.83
390497--390530	6	5.7	6	100	0	68	32	17	0	50	1.47
390719--390747	11	2.5	12	88	11	51	34	0	34	31	1.58

Tables:   1   2   3   4   5   6   7