Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_069591
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 469769
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
File 4 of 7
Found at i:242912 original size:14 final size:14
Alignment explanation
Indices: 242890--242921 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
242880 ATCTCGGTAT
*
242890 TCTCCCCCCCCCTC
1 TCTCACCCCCCCTC
242904 TCTCACCCCCCCTC
1 TCTCACCCCCCCTC
242918 TCTC
1 TCTC
242922 TATATGGGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.03, C:0.72, G:0.00, T:0.25
Consensus pattern (14 bp):
TCTCACCCCCCCTC
Left flanking sequence: Indices 242390 -- 242889
TAGGCCGTCGGGCCCTCATCTATCTAATCCATATAGGGGCTGGATTAATAGGCTCTGTATATAGG
GGAGATAGTCATGCTCATAACTCAACCCGTCGTGTCGCCCCGAGCCGCCATCGGGCCTATCGGTG
GGAGGGGGTGAGTTCTCTATATAGGGCCGACTAGATATAGATAGCTATAGCCGCACCCGCCCCCT
TCTTGGGTCTCGATCCCTCGCCATAGAGAGGTGGGACCACCTATATAGATCTAGAGATCTAGCTG
CGAGTGCCCTATCTAAATAGAGAATTGGGGCCCTCGATTGATGACAATCGAGTCCCTCCCCAGAT
AGCCCCTCCGGAGACCCTCCGGAGACCCTACCCTCTATTTTCTCTCATCCGGAGGGTCTCCGGAG
GGGCGGGAGACAAGGTATAGATAGATGGGGCCCCCCCCCTCTCTATTCTATCTTATCTCGCCATA
TAGATAGTTCAGGGCTCCCCTCTCTATTCTATCTTATCTCGGTAT
Right flanking sequence: Indices 242922 -- 243421
TATATGGGTGAGAGAGGGGGGGCGAGAGAGGGCTCGGCTCCCCGGGGGCCCTCTCTATTCTATCT
TATCTCGCCATATAGATAGTTCAGGGCTCCCCCCATCTATATAGAAGGGCTCGGTATTCTCTATA
TGGCCTCCAGATCCATATCTATATAGGGGGCCCCCATATAGATCTAGATAGGGGAGAATAGATAG
GGGGTTGAGTGGTTCGCTGACGCTCACACCTCGACCCCCTCGACATCTATATAGAGGGGGGGGTC
GAGCTCTATTAATCCTCTACTCTACGCTATACCAGTCATCGTCATCAGTCGTATCACGTATATAT
ACAAAATGAAGTCATCAGTCGTATCACGTACATAAAGGATGGAGAGATGGATGCCACCCCCAGAT
AATATATAGGTAACAGTGCCCCGGCCACCGGGCCATTGATTGAAGTGCATATACTATAGATGGAT
ACTATGGAGAGTTGGTCGAGTCCATCCCCGGATGCCCCTATGACG
Found at i:245476 original size:4 final size:4
Alignment explanation
Indices: 245467--245565 Score: 108
Period size: 4 Copynumber: 24.8 Consensus size: 4
245457 ATAGCCATAT
* * * *
245467 AGAG AGAG AGAT AGAG AGAG AGAT AGAG AGAG AGAT AGAG AGAG AGAT
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
* * * * * *
245515 AGAT AGAT AGAG AGAG ATAT AGAG AGAG AGAT AGAG AGAT AGAG AGAG
1 AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG AGAG
245563 AGA
1 AGA
245566 TCTATATATA
Statistics
Matches: 79, Mismatches: 16, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 79 1.00
ACGTcount: A:0.51, C:0.00, G:0.39, T:0.10
Consensus pattern (4 bp):
AGAG
Left flanking sequence: Indices 244967 -- 245466
CTGGTTAGATGGCCCAGGCGGCACCGAGGCGTATTCAATTTCAATTCAACGGCGCACTAGTATTC
TTCGCTGGGCCACCCACACTAGGCTACAGGGTTATAGTAGTCATATTCTAGTCAATGGCAGGCAT
CACACAACGGGCCCACAGCTATATAGTCAACCCATACCCATACGTATCTAGGGGAAACCCATTCA
ATGACGAACTAAACTCTAGTAGAGGGGAGGGGCGGTCGTATATATAGATCTGGGGGGCAGGCATT
ATCCATCACATCATGTTACCCACATCACACCCATTCCATTATCCATCATGATAGAGATGAGATCG
GTACGGTATATTCATTATGCATCACACACATCATTCATGCCACGCCGGGCATCGTGCACGTTGGG
TCACTTCGGTCATACATATTCCGTATGCCCCGATCTGGGCATTGATCATTGATAGACTTGTTCAA
TCATTGATAGACTGAACGCCAAGCCGATAGCATTGATAGCCATAT
Right flanking sequence: Indices 245566 -- 246065
TCTATATATATATATATATATCTATAGATCTATAGATATCTATCTATCTATCTATAGAGGCCTCT
CTATAGATCTTATCTATCTGGGCGGGCGGATTCATCGTTTGCCTTGCCTATAGCCTATATAAGAG
ATGGGGGATGGGGTCGGCGGCCGGCGGCCCCACCCGGGAACCGACTGATCCACCAGATTCACGCC
TGAAGATATATAGAGATGGCCCCGATCGAGGGGGTGCCCCATATCTTATCTAGGACCTGGCCCCC
CCCCTCCATATAGATATAGAATTGAGAATTCTAGATATGGCGGGGTCATACCGGATGCTCTATAT
AGCCAGCCCGTCGTCACCTCGATTGACTGGCGCCCCCCATCCATAAGAAATGAAATACTGTTCCC
TATATAGAGATAGGCCAGATCGGCCACGATGGAGAACAAACCAAACAAAACATATTACGTATGTA
ATATAGAAAGAATGGGTGATCGATTCGCGTCGATTCATGGTCCCG
Found at i:245492 original size:32 final size:31
Alignment explanation
Indices: 245467--245566 Score: 139
Period size: 32 Copynumber: 3.2 Consensus size: 31
245457 ATAGCCATAT
* * *
245467 AGAGAGAGAGATAGAGAGAG-AGATAGAGAG
1 AGAGATAGAGAGAGAGATAGAAGATAGAGAG
245497 AGAGATAGAGAGAGAGATAGATAGATAGAGAG
1 AGAGATAGAGAGAGAGATAGA-AGATAGAGAG
*
245529 AGATATAGAGAGAGAGATAGAGAGATAGAGAG
1 AGAGATAGAGAGAGAGATAGA-AGATAGAGAG
245561 AGAGAT
1 AGAGAT
245567 CTATATATAT
Statistics
Matches: 62, Mismatches: 6, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
30 17 0.27
32 45 0.73
ACGTcount: A:0.50, C:0.00, G:0.39, T:0.11
Consensus pattern (31 bp):
AGAGATAGAGAGAGAGATAGAAGATAGAGAG
Left flanking sequence: Indices 244967 -- 245466
CTGGTTAGATGGCCCAGGCGGCACCGAGGCGTATTCAATTTCAATTCAACGGCGCACTAGTATTC
TTCGCTGGGCCACCCACACTAGGCTACAGGGTTATAGTAGTCATATTCTAGTCAATGGCAGGCAT
CACACAACGGGCCCACAGCTATATAGTCAACCCATACCCATACGTATCTAGGGGAAACCCATTCA
ATGACGAACTAAACTCTAGTAGAGGGGAGGGGCGGTCGTATATATAGATCTGGGGGGCAGGCATT
ATCCATCACATCATGTTACCCACATCACACCCATTCCATTATCCATCATGATAGAGATGAGATCG
GTACGGTATATTCATTATGCATCACACACATCATTCATGCCACGCCGGGCATCGTGCACGTTGGG
TCACTTCGGTCATACATATTCCGTATGCCCCGATCTGGGCATTGATCATTGATAGACTTGTTCAA
TCATTGATAGACTGAACGCCAAGCCGATAGCATTGATAGCCATAT
Right flanking sequence: Indices 245567 -- 246066
CTATATATATATATATATATCTATAGATCTATAGATATCTATCTATCTATCTATAGAGGCCTCTC
TATAGATCTTATCTATCTGGGCGGGCGGATTCATCGTTTGCCTTGCCTATAGCCTATATAAGAGA
TGGGGGATGGGGTCGGCGGCCGGCGGCCCCACCCGGGAACCGACTGATCCACCAGATTCACGCCT
GAAGATATATAGAGATGGCCCCGATCGAGGGGGTGCCCCATATCTTATCTAGGACCTGGCCCCCC
CCCTCCATATAGATATAGAATTGAGAATTCTAGATATGGCGGGGTCATACCGGATGCTCTATATA
GCCAGCCCGTCGTCACCTCGATTGACTGGCGCCCCCCATCCATAAGAAATGAAATACTGTTCCCT
ATATAGAGATAGGCCAGATCGGCCACGATGGAGAACAAACCAAACAAAACATATTACGTATGTAA
TATAGAAAGAATGGGTGATCGATTCGCGTCGATTCATGGTCCCGA
Found at i:245566 original size:12 final size:12
Alignment explanation
Indices: 245465--245565 Score: 138
Period size: 12 Copynumber: 8.8 Consensus size: 12
245455 TGATAGCCAT
245465 ATAGAGAGAGAG
1 ATAGAGAGAGAG
245477 ATAGAGAGAGAG
1 ATAGAGAGAGAG
245489 ATAGAGAGAGAG
1 ATAGAGAGAGAG
245501 ATAGAGAGAGAG
1 ATAGAGAGAGAG
*
245513 AT----AGATAG
1 ATAGAGAGAGAG
*
245521 ATAGAGAGAGAT
1 ATAGAGAGAGAG
245533 ATAGAGAGAGAG
1 ATAGAGAGAGAG
*
245545 ATAGAGAGATAG
1 ATAGAGAGAGAG
*
245557 AGAGAGAGA
1 ATAGAGAGA
245566 TCTATATATA
Statistics
Matches: 79, Mismatches: 6, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
8 7 0.09
12 72 0.91
ACGTcount: A:0.50, C:0.00, G:0.39, T:0.11
Consensus pattern (12 bp):
ATAGAGAGAGAG
Left flanking sequence: Indices 244965 -- 245464
CACTGGTTAGATGGCCCAGGCGGCACCGAGGCGTATTCAATTTCAATTCAACGGCGCACTAGTAT
TCTTCGCTGGGCCACCCACACTAGGCTACAGGGTTATAGTAGTCATATTCTAGTCAATGGCAGGC
ATCACACAACGGGCCCACAGCTATATAGTCAACCCATACCCATACGTATCTAGGGGAAACCCATT
CAATGACGAACTAAACTCTAGTAGAGGGGAGGGGCGGTCGTATATATAGATCTGGGGGGCAGGCA
TTATCCATCACATCATGTTACCCACATCACACCCATTCCATTATCCATCATGATAGAGATGAGAT
CGGTACGGTATATTCATTATGCATCACACACATCATTCATGCCACGCCGGGCATCGTGCACGTTG
GGTCACTTCGGTCATACATATTCCGTATGCCCCGATCTGGGCATTGATCATTGATAGACTTGTTC
AATCATTGATAGACTGAACGCCAAGCCGATAGCATTGATAGCCAT
Right flanking sequence: Indices 245566 -- 246065
TCTATATATATATATATATATCTATAGATCTATAGATATCTATCTATCTATCTATAGAGGCCTCT
CTATAGATCTTATCTATCTGGGCGGGCGGATTCATCGTTTGCCTTGCCTATAGCCTATATAAGAG
ATGGGGGATGGGGTCGGCGGCCGGCGGCCCCACCCGGGAACCGACTGATCCACCAGATTCACGCC
TGAAGATATATAGAGATGGCCCCGATCGAGGGGGTGCCCCATATCTTATCTAGGACCTGGCCCCC
CCCCTCCATATAGATATAGAATTGAGAATTCTAGATATGGCGGGGTCATACCGGATGCTCTATAT
AGCCAGCCCGTCGTCACCTCGATTGACTGGCGCCCCCCATCCATAAGAAATGAAATACTGTTCCC
TATATAGAGATAGGCCAGATCGGCCACGATGGAGAACAAACCAAACAAAACATATTACGTATGTA
ATATAGAAAGAATGGGTGATCGATTCGCGTCGATTCATGGTCCCG
Found at i:245604 original size:22 final size:22
Alignment explanation
Indices: 245574--245623 Score: 64
Period size: 22 Copynumber: 2.3 Consensus size: 22
245564 GATCTATATA
*
245574 TATATATATATATCTATAGATC
1 TATAGATATATATCTATAGATC
* **
245596 TATAGATATCTATCTATCTATC
1 TATAGATATATATCTATAGATC
245618 TATAGA
1 TATAGA
245624 GGCCTCTCTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (22 bp):
TATAGATATATATCTATAGATC
Left flanking sequence: Indices 245074 -- 245573
ATATTCTAGTCAATGGCAGGCATCACACAACGGGCCCACAGCTATATAGTCAACCCATACCCATA
CGTATCTAGGGGAAACCCATTCAATGACGAACTAAACTCTAGTAGAGGGGAGGGGCGGTCGTATA
TATAGATCTGGGGGGCAGGCATTATCCATCACATCATGTTACCCACATCACACCCATTCCATTAT
CCATCATGATAGAGATGAGATCGGTACGGTATATTCATTATGCATCACACACATCATTCATGCCA
CGCCGGGCATCGTGCACGTTGGGTCACTTCGGTCATACATATTCCGTATGCCCCGATCTGGGCAT
TGATCATTGATAGACTTGTTCAATCATTGATAGACTGAACGCCAAGCCGATAGCATTGATAGCCA
TATAGAGAGAGAGATAGAGAGAGAGATAGAGAGAGAGATAGAGAGAGAGATAGATAGATAGAGAG
AGATATAGAGAGAGAGATAGAGAGATAGAGAGAGAGATCTATATA
Right flanking sequence: Indices 245624 -- 246123
GGCCTCTCTATAGATCTTATCTATCTGGGCGGGCGGATTCATCGTTTGCCTTGCCTATAGCCTAT
ATAAGAGATGGGGGATGGGGTCGGCGGCCGGCGGCCCCACCCGGGAACCGACTGATCCACCAGAT
TCACGCCTGAAGATATATAGAGATGGCCCCGATCGAGGGGGTGCCCCATATCTTATCTAGGACCT
GGCCCCCCCCCTCCATATAGATATAGAATTGAGAATTCTAGATATGGCGGGGTCATACCGGATGC
TCTATATAGCCAGCCCGTCGTCACCTCGATTGACTGGCGCCCCCCATCCATAAGAAATGAAATAC
TGTTCCCTATATAGAGATAGGCCAGATCGGCCACGATGGAGAACAAACCAAACAAAACATATTAC
GTATGTAATATAGAAAGAATGGGTGATCGATTCGCGTCGATTCATGGTCCCGATCTATTGAGTTC
CGAGTCCCCATATCTATATAGGGGGCCTATATTCTCTAGAGAGGG
Found at i:245640 original size:22 final size:22
Alignment explanation
Indices: 245584--245640 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
245574 TATATATATA
* *
245584 TATCTATAGATCTATAGATATC
1 TATCTATAGATCTATAGAGACC
** *
245606 TATCTATCTATCTATAGAGGCC
1 TATCTATAGATCTATAGAGACC
*
245628 TCTCTATAGATCT
1 TATCTATAGATCT
245641 TATCTATCTG
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.30, C:0.19, G:0.11, T:0.40
Consensus pattern (22 bp):
TATCTATAGATCTATAGAGACC
Left flanking sequence: Indices 245084 -- 245583
CAATGGCAGGCATCACACAACGGGCCCACAGCTATATAGTCAACCCATACCCATACGTATCTAGG
GGAAACCCATTCAATGACGAACTAAACTCTAGTAGAGGGGAGGGGCGGTCGTATATATAGATCTG
GGGGGCAGGCATTATCCATCACATCATGTTACCCACATCACACCCATTCCATTATCCATCATGAT
AGAGATGAGATCGGTACGGTATATTCATTATGCATCACACACATCATTCATGCCACGCCGGGCAT
CGTGCACGTTGGGTCACTTCGGTCATACATATTCCGTATGCCCCGATCTGGGCATTGATCATTGA
TAGACTTGTTCAATCATTGATAGACTGAACGCCAAGCCGATAGCATTGATAGCCATATAGAGAGA
GAGATAGAGAGAGAGATAGAGAGAGAGATAGAGAGAGAGATAGATAGATAGAGAGAGATATAGAG
AGAGAGATAGAGAGATAGAGAGAGAGATCTATATATATATATATA
Right flanking sequence: Indices 245641 -- 246140
TATCTATCTGGGCGGGCGGATTCATCGTTTGCCTTGCCTATAGCCTATATAAGAGATGGGGGATG
GGGTCGGCGGCCGGCGGCCCCACCCGGGAACCGACTGATCCACCAGATTCACGCCTGAAGATATA
TAGAGATGGCCCCGATCGAGGGGGTGCCCCATATCTTATCTAGGACCTGGCCCCCCCCCTCCATA
TAGATATAGAATTGAGAATTCTAGATATGGCGGGGTCATACCGGATGCTCTATATAGCCAGCCCG
TCGTCACCTCGATTGACTGGCGCCCCCCATCCATAAGAAATGAAATACTGTTCCCTATATAGAGA
TAGGCCAGATCGGCCACGATGGAGAACAAACCAAACAAAACATATTACGTATGTAATATAGAAAG
AATGGGTGATCGATTCGCGTCGATTCATGGTCCCGATCTATTGAGTTCCGAGTCCCCATATCTAT
ATAGGGGGCCTATATTCTCTAGAGAGGGGCGCTCCCGTTCCGCCG
Found at i:247725 original size:17 final size:17
Alignment explanation
Indices: 247703--247767 Score: 121
Period size: 17 Copynumber: 3.8 Consensus size: 17
247693 CCACATACCA
247703 CCATGGATCGGGATCGG
1 CCATGGATCGGGATCGG
247720 CCATGGATCGGGATCGG
1 CCATGGATCGGGATCGG
247737 CCATGGATCGGGATCGG
1 CCATGGATCGGGATCGG
*
247754 CCATAGATCGGGAT
1 CCATGGATCGGGAT
247768 GGGGATTTTG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
17 47 1.00
ACGTcount: A:0.20, C:0.23, G:0.38, T:0.18
Consensus pattern (17 bp):
CCATGGATCGGGATCGG
Left flanking sequence: Indices 247203 -- 247702
TGGGCAGGAGTAAGTGTGCCGAGAACAGAGAACAGCCCGTTTCTAGATCGTTCTCCCTTTCCCGA
TCGGTATAGGTTCGCCTACTATACTAAAGGCACTACCACCCATCCTCATGAGTTTCTGGATGGGT
CAGTCAGGCAAGGCACAGATAGCGACAGGGAGCGTCTCTTCCCATTCACTCCCAGATCTATATAT
AGGGGGCACTCCCTTTCACTCTATATGTCCCCGTCCCCTGCCGCCTTTCACTATATATCACGAAA
CGCCTTCTCTACCTTCTCTATACATCGGGCATCAGGACCCCCTATGTATAGCATGATCCGCTTGA
AGAGAGAGATATAGAGAGAGAGAGATATATATCTGAGAGAGATATAGATAGAACGCCATCCATGC
CTTCCGCCTTCGAGAATAATGGAATGGGTCGAGATTGAGATGGAGAGCGCTACGAACAATCTTAG
TCGCAGCTTGGTCTCGCGGTTATCAGTGGCAGCATCCACATACCA
Right flanking sequence: Indices 247768 -- 248267
GGGGATTTTGTTGTTCAAGTCCGGCCGCGGCCCTAGCCGATCCGCCGGCCGAACGAAGAATTCAG
AATTCTAAATAATAGGGCGGGGCGGGCTGGGCTGCGAGCCATCATCCCAGCAGCACAAACAGCCC
AGAAACGAGATGTCGCGGATTGAACGCGGTCCTCTTCCAGATATGAGATATTGAGATAGAGTATA
TATGTTCGCCGTTCGGCCCGATGGTCCAAGGCGAACGGCGGAGCAAAGAACAGAGGTCCCCCCTA
TCTATATATTGATATTGCAAATGGGGAAGAACACTGCCCCATATATAGATAGGATAGGATAGGAT
AGGCCCTACCCTATATTATTGATTGAGTATTCGGGAGATTCATCTGATAGGACAACTCGTCGCCC
TCCGCCCCTAGAAATTCAAGGGAGGGGGGCGCAGTAGCTAGACGGAGCCCACCAACGACGATTCC
AGAGACCGGCCGCTTCCCTCCATCAGTTCCGATCGGGATAAGGTT
Found at i:248337 original size:13 final size:13
Alignment explanation
Indices: 248319--248345 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
248309 ATTGATGCAG
248319 CCTCTACTATCTA
1 CCTCTACTATCTA
248332 CCTCTACTATCTA
1 CCTCTACTATCTA
248345 C
1 C
248346 GTAATATGAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.22, C:0.41, G:0.00, T:0.37
Consensus pattern (13 bp):
CCTCTACTATCTA
Left flanking sequence: Indices 247819 -- 248318
AACGAAGAATTCAGAATTCTAAATAATAGGGCGGGGCGGGCTGGGCTGCGAGCCATCATCCCAGC
AGCACAAACAGCCCAGAAACGAGATGTCGCGGATTGAACGCGGTCCTCTTCCAGATATGAGATAT
TGAGATAGAGTATATATGTTCGCCGTTCGGCCCGATGGTCCAAGGCGAACGGCGGAGCAAAGAAC
AGAGGTCCCCCCTATCTATATATTGATATTGCAAATGGGGAAGAACACTGCCCCATATATAGATA
GGATAGGATAGGATAGGCCCTACCCTATATTATTGATTGAGTATTCGGGAGATTCATCTGATAGG
ACAACTCGTCGCCCTCCGCCCCTAGAAATTCAAGGGAGGGGGGCGCAGTAGCTAGACGGAGCCCA
CCAACGACGATTCCAGAGACCGGCCGCTTCCCTCCATCAGTTCCGATCGGGATAAGGTTGGTGGA
GCATCGTACGGCGTGGAGAGAACCCTCTATAGAGTATTGATGCAG
Right flanking sequence: Indices 248346 -- 248845
GTAATATGATTGATGAGGTCCATGAGGAAGGGTGATGCGGTCGGGAGTCCCGAACTCACCCCGCA
TAGATCTAGATAGGGGCTGAGCCCGGAGGCGGAGATGGAATAGAAATCTATTTTCTTTCGGGTCC
GTTCATCATAGAACAATAACTGGAACGAGGAGCAACTCTCCAGTCAACTGAGCCATCTCCATCTA
GGCACAGGGCCGTGGCACCGCCAGATTGTTCTAAACCCAACCTAACCTATATAGGGGTGGGGGGG
GGGGTGGGCGCCCATGCCCATATCTATATAGGGGGGGAGGTCATTCTCGCTCGACCGGCCCTATA
TCTCCATAAATTGAGAGGGGGGGGTCGGACTCGCGCCCGATCGACGGCCCAGGGACTCTATGCAG
ATAATGCTATGCCCGCCATCTCTAGTTATCATATAGATAGAGTGGGGGCCCGGACTGGGGGCGAC
GCGACAGCCCCCCTTGAAATCTATAGGGGGTTCTGCTCTCTACAT
Found at i:252419 original size:51 final size:51
Alignment explanation
Indices: 252354--252467 Score: 184
Period size: 46 Copynumber: 2.3 Consensus size: 51
252344 TCTGGAGGGT
*
252354 GAGGGGTGAGCGTAGCGTAGCGGAGCGAACCACTCGATTGAGAGATCAATC
1 GAGGAGTGAGCGTAGCGTAGCGGAGCGAACCACTCGATTGAGAGATCAATC
252405 GAGGAGT----G-AGCGTAGCGGAGCGAACCACTCGATTGAGAGATCAATC
1 GAGGAGTGAGCGTAGCGTAGCGGAGCGAACCACTCGATTGAGAGATCAATC
252451 GAGGAGTGAGCGTAGCG
1 GAGGAGTGAGCGTAGCG
252468 AACCACTCGC
Statistics
Matches: 57, Mismatches: 1, Indels: 10
0.84 0.01 0.15
Matches are distributed among these distances:
46 45 0.79
47 1 0.02
50 1 0.02
51 10 0.18
ACGTcount: A:0.28, C:0.18, G:0.39, T:0.15
Consensus pattern (51 bp):
GAGGAGTGAGCGTAGCGTAGCGGAGCGAACCACTCGATTGAGAGATCAATC
Left flanking sequence: Indices 251854 -- 252353
AACTATGGAGCCCTATAGATAGATCTAACTGGGGTGAGCGATAGATCTATGATATCTATTCCCTA
TAGATCCATATGCCCGGGCGGCCCCTTATCTATATATGCGGCACCCTCTATATCCCCTATCGGCC
CTCCATAGTTCTGAGAGAGAGAGATTGGGGCCCGAACTCCCATATAGATGGCGAGGGCCCCCTCT
CTCTAGATGGGGCCCATATATCAAGATAAGATAGTTCAGGAGGCCCTATATAGAGATCTGGAGAG
GGCGAGGGGTGAGCGTAGCGAACCACTCGCCCGCCCCCCCTGAACTCTGAACTCTCTCGGCTCCC
AGATTTCTATATAGGGCTGGAGGGCCCCCAATCTCTCTATCTGCCAGATCTGATCTCTTTAGAGG
GGAGGGGAGGGGAGGGGCCCGCCCCCCCTGAACTCTCTCGGCTCGGCCCCCAATCTCTCTATCTG
CCAGATCTGATCTCGGAGGGGCCCGCCCCTCTCTATCTGGAGGGT
Right flanking sequence: Indices 252468 -- 252967
AACCACTCGCCCGCCCCTCTATTCTCTCTGGAGGGCGAGGACAGATATAGATATAGGGGGGACTC
GTCCGCCCCTATATCTGAATGAGACTATCTGAATGAGACTATCTGAACTCTGAATGAGACTATCT
GAACTCTGTATCTCTCTCTCTATCTCTCTCTCTCTATATCTCTATCTGTATCTCTCTCTCTATCT
CTCTCTCTATCTCTATCTATATCTGAATGAGACTCTCTGAACTCTGAATGAGACTATATATCTCG
TAGCGAACCACTCGATTGAGAAATCAATCGAGGGCCGATAAGATCTATATAGGGAGGGGAGCCCT
ATATTCCATGGACACAATGAATCAAATGAATCAATGTTCCGAGCTAATGAATCTTTCAATGTGAA
TCAATGTTATTACATACGTAATATGATCGGATCGTTCGATTGGAACAAATCAAATAGGATATGGC
GGCACCACCAATATATGGATGGATGGATGGATGGATGGATGGATG
Found at i:252434 original size:46 final size:46
Alignment explanation
Indices: 252367--252467 Score: 202
Period size: 46 Copynumber: 2.2 Consensus size: 46
252357 GGGTGAGCGT
252367 AGCGTAGCGGAGCGAACCACTCGATTGAGAGATCAATCGAGGAGTG
1 AGCGTAGCGGAGCGAACCACTCGATTGAGAGATCAATCGAGGAGTG
252413 AGCGTAGCGGAGCGAACCACTCGATTGAGAGATCAATCGAGGAGTG
1 AGCGTAGCGGAGCGAACCACTCGATTGAGAGATCAATCGAGGAGTG
252459 AGCGTAGCG
1 AGCGTAGCG
252468 AACCACTCGC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 55 1.00
ACGTcount: A:0.30, C:0.20, G:0.36, T:0.15
Consensus pattern (46 bp):
AGCGTAGCGGAGCGAACCACTCGATTGAGAGATCAATCGAGGAGTG
Left flanking sequence: Indices 251867 -- 252366
TATAGATAGATCTAACTGGGGTGAGCGATAGATCTATGATATCTATTCCCTATAGATCCATATGC
CCGGGCGGCCCCTTATCTATATATGCGGCACCCTCTATATCCCCTATCGGCCCTCCATAGTTCTG
AGAGAGAGAGATTGGGGCCCGAACTCCCATATAGATGGCGAGGGCCCCCTCTCTCTAGATGGGGC
CCATATATCAAGATAAGATAGTTCAGGAGGCCCTATATAGAGATCTGGAGAGGGCGAGGGGTGAG
CGTAGCGAACCACTCGCCCGCCCCCCCTGAACTCTGAACTCTCTCGGCTCCCAGATTTCTATATA
GGGCTGGAGGGCCCCCAATCTCTCTATCTGCCAGATCTGATCTCTTTAGAGGGGAGGGGAGGGGA
GGGGCCCGCCCCCCCTGAACTCTCTCGGCTCGGCCCCCAATCTCTCTATCTGCCAGATCTGATCT
CGGAGGGGCCCGCCCCTCTCTATCTGGAGGGTGAGGGGTGAGCGT
Right flanking sequence: Indices 252468 -- 252967
AACCACTCGCCCGCCCCTCTATTCTCTCTGGAGGGCGAGGACAGATATAGATATAGGGGGGACTC
GTCCGCCCCTATATCTGAATGAGACTATCTGAATGAGACTATCTGAACTCTGAATGAGACTATCT
GAACTCTGTATCTCTCTCTCTATCTCTCTCTCTCTATATCTCTATCTGTATCTCTCTCTCTATCT
CTCTCTCTATCTCTATCTATATCTGAATGAGACTCTCTGAACTCTGAATGAGACTATATATCTCG
TAGCGAACCACTCGATTGAGAAATCAATCGAGGGCCGATAAGATCTATATAGGGAGGGGAGCCCT
ATATTCCATGGACACAATGAATCAAATGAATCAATGTTCCGAGCTAATGAATCTTTCAATGTGAA
TCAATGTTATTACATACGTAATATGATCGGATCGTTCGATTGGAACAAATCAAATAGGATATGGC
GGCACCACCAATATATGGATGGATGGATGGATGGATGGATGGATG
Found at i:252586 original size:21 final size:21
Alignment explanation
Indices: 252560--252605 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
252550 AATGAGACTA
252560 TCTGAATGAGACTATCTGAAC
1 TCTGAATGAGACTATCTGAAC
252581 TCTGAATGAGACTATCTGAAC
1 TCTGAATGAGACTATCTGAAC
252602 TCTG
1 TCTG
252606 TATCTCTCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (21 bp):
TCTGAATGAGACTATCTGAAC
Left flanking sequence: Indices 252060 -- 252559
GCCCATATATCAAGATAAGATAGTTCAGGAGGCCCTATATAGAGATCTGGAGAGGGCGAGGGGTG
AGCGTAGCGAACCACTCGCCCGCCCCCCCTGAACTCTGAACTCTCTCGGCTCCCAGATTTCTATA
TAGGGCTGGAGGGCCCCCAATCTCTCTATCTGCCAGATCTGATCTCTTTAGAGGGGAGGGGAGGG
GAGGGGCCCGCCCCCCCTGAACTCTCTCGGCTCGGCCCCCAATCTCTCTATCTGCCAGATCTGAT
CTCGGAGGGGCCCGCCCCTCTCTATCTGGAGGGTGAGGGGTGAGCGTAGCGTAGCGGAGCGAACC
ACTCGATTGAGAGATCAATCGAGGAGTGAGCGTAGCGGAGCGAACCACTCGATTGAGAGATCAAT
CGAGGAGTGAGCGTAGCGAACCACTCGCCCGCCCCTCTATTCTCTCTGGAGGGCGAGGACAGATA
TAGATATAGGGGGGACTCGTCCGCCCCTATATCTGAATGAGACTA
Right flanking sequence: Indices 252606 -- 253105
TATCTCTCTCTCTATCTCTCTCTCTCTATATCTCTATCTGTATCTCTCTCTCTATCTCTCTCTCT
ATCTCTATCTATATCTGAATGAGACTCTCTGAACTCTGAATGAGACTATATATCTCGTAGCGAAC
CACTCGATTGAGAAATCAATCGAGGGCCGATAAGATCTATATAGGGAGGGGAGCCCTATATTCCA
TGGACACAATGAATCAAATGAATCAATGTTCCGAGCTAATGAATCTTTCAATGTGAATCAATGTT
ATTACATACGTAATATGATCGGATCGTTCGATTGGAACAAATCAAATAGGATATGGCGGCACCAC
CAATATATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATAGTGGCCAATGAA
CAACGGCACGATCACGACCACCCCGGGGCCCCCTCCCCCTAGATATAGATATCTATCTCTCTCTC
TATATCTCTCTCTATCTATCTCTATATCTATATCTCTCTCTATCT
Found at i:252600 original size:14 final size:14
Alignment explanation
Indices: 252544--252579 Score: 72
Period size: 14 Copynumber: 2.6 Consensus size: 14
252534 TCCGCCCCTA
252544 TATCTGAATGAGAC
1 TATCTGAATGAGAC
252558 TATCTGAATGAGAC
1 TATCTGAATGAGAC
252572 TATCTGAA
1 TATCTGAA
252580 CTCTGAATGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.36, C:0.14, G:0.19, T:0.31
Consensus pattern (14 bp):
TATCTGAATGAGAC
Left flanking sequence: Indices 252044 -- 252543
CCTCTCTCTAGATGGGGCCCATATATCAAGATAAGATAGTTCAGGAGGCCCTATATAGAGATCTG
GAGAGGGCGAGGGGTGAGCGTAGCGAACCACTCGCCCGCCCCCCCTGAACTCTGAACTCTCTCGG
CTCCCAGATTTCTATATAGGGCTGGAGGGCCCCCAATCTCTCTATCTGCCAGATCTGATCTCTTT
AGAGGGGAGGGGAGGGGAGGGGCCCGCCCCCCCTGAACTCTCTCGGCTCGGCCCCCAATCTCTCT
ATCTGCCAGATCTGATCTCGGAGGGGCCCGCCCCTCTCTATCTGGAGGGTGAGGGGTGAGCGTAG
CGTAGCGGAGCGAACCACTCGATTGAGAGATCAATCGAGGAGTGAGCGTAGCGGAGCGAACCACT
CGATTGAGAGATCAATCGAGGAGTGAGCGTAGCGAACCACTCGCCCGCCCCTCTATTCTCTCTGG
AGGGCGAGGACAGATATAGATATAGGGGGGACTCGTCCGCCCCTA
Right flanking sequence: Indices 252580 -- 253079
CTCTGAATGAGACTATCTGAACTCTGTATCTCTCTCTCTATCTCTCTCTCTCTATATCTCTATCT
GTATCTCTCTCTCTATCTCTCTCTCTATCTCTATCTATATCTGAATGAGACTCTCTGAACTCTGA
ATGAGACTATATATCTCGTAGCGAACCACTCGATTGAGAAATCAATCGAGGGCCGATAAGATCTA
TATAGGGAGGGGAGCCCTATATTCCATGGACACAATGAATCAAATGAATCAATGTTCCGAGCTAA
TGAATCTTTCAATGTGAATCAATGTTATTACATACGTAATATGATCGGATCGTTCGATTGGAACA
AATCAAATAGGATATGGCGGCACCACCAATATATGGATGGATGGATGGATGGATGGATGGATGGA
TGGATGGATGGATAGTGGCCAATGAACAACGGCACGATCACGACCACCCCGGGGCCCCCTCCCCC
TAGATATAGATATCTATCTCTCTCTCTATATCTCTCTCTATCTAT
Found at i:252615 original size:2 final size:2
Alignment explanation
Indices: 252608--252676 Score: 66
Period size: 2 Copynumber: 34.5 Consensus size: 2
252598 GAACTCTGTA
* * * * * *
252608 TC TC TC TC TC TA TC TC TC TC TC TC TA TA TC TC TA TC TG TA TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* *
252650 TC TC TC TC TA TC TC TC TC TC TA TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
252677 ATCTATATCT
Statistics
Matches: 54, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
2 54 1.00
ACGTcount: A:0.10, C:0.38, G:0.01, T:0.51
Consensus pattern (2 bp):
TC
Left flanking sequence: Indices 252108 -- 252607
GGAGAGGGCGAGGGGTGAGCGTAGCGAACCACTCGCCCGCCCCCCCTGAACTCTGAACTCTCTCG
GCTCCCAGATTTCTATATAGGGCTGGAGGGCCCCCAATCTCTCTATCTGCCAGATCTGATCTCTT
TAGAGGGGAGGGGAGGGGAGGGGCCCGCCCCCCCTGAACTCTCTCGGCTCGGCCCCCAATCTCTC
TATCTGCCAGATCTGATCTCGGAGGGGCCCGCCCCTCTCTATCTGGAGGGTGAGGGGTGAGCGTA
GCGTAGCGGAGCGAACCACTCGATTGAGAGATCAATCGAGGAGTGAGCGTAGCGGAGCGAACCAC
TCGATTGAGAGATCAATCGAGGAGTGAGCGTAGCGAACCACTCGCCCGCCCCTCTATTCTCTCTG
GAGGGCGAGGACAGATATAGATATAGGGGGGACTCGTCCGCCCCTATATCTGAATGAGACTATCT
GAATGAGACTATCTGAACTCTGAATGAGACTATCTGAACTCTGTA
Right flanking sequence: Indices 252677 -- 253176
ATCTATATCTGAATGAGACTCTCTGAACTCTGAATGAGACTATATATCTCGTAGCGAACCACTCG
ATTGAGAAATCAATCGAGGGCCGATAAGATCTATATAGGGAGGGGAGCCCTATATTCCATGGACA
CAATGAATCAAATGAATCAATGTTCCGAGCTAATGAATCTTTCAATGTGAATCAATGTTATTACA
TACGTAATATGATCGGATCGTTCGATTGGAACAAATCAAATAGGATATGGCGGCACCACCAATAT
ATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATAGTGGCCAATGAACAACGG
CACGATCACGACCACCCCGGGGCCCCCTCCCCCTAGATATAGATATCTATCTCTCTCTCTATATC
TCTCTCTATCTATCTCTATATCTATATCTCTCTCTATCTCTATATCTATCTCTATATCTCTATCT
CTCTCTATATCTCTATCTCTCTATCATCTATCCATCGAGAGCCGG
Found at i:252623 original size:6 final size:6
Alignment explanation
Indices: 252606--252686 Score: 85
Period size: 6 Copynumber: 13.8 Consensus size: 6
252596 CTGAACTCTG
* * * *
252606 TATCTC TCTCTC TATCTC --TCTC TCTCTA TATCTC TATCTG TATCTC
1 TATCTC TATCTC TATCTC TATCTC TATCTC TATCTC TATCTC TATCTC
* * *
252652 TCTCTC TATCTC TCTCTC TATCTC TATCTA TATCT
1 TATCTC TATCTC TATCTC TATCTC TATCTC TATCT
252687 GAATGAGACT
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
4 4 0.07
6 57 0.93
ACGTcount: A:0.14, C:0.35, G:0.01, T:0.51
Consensus pattern (6 bp):
TATCTC
Left flanking sequence: Indices 252106 -- 252605
CTGGAGAGGGCGAGGGGTGAGCGTAGCGAACCACTCGCCCGCCCCCCCTGAACTCTGAACTCTCT
CGGCTCCCAGATTTCTATATAGGGCTGGAGGGCCCCCAATCTCTCTATCTGCCAGATCTGATCTC
TTTAGAGGGGAGGGGAGGGGAGGGGCCCGCCCCCCCTGAACTCTCTCGGCTCGGCCCCCAATCTC
TCTATCTGCCAGATCTGATCTCGGAGGGGCCCGCCCCTCTCTATCTGGAGGGTGAGGGGTGAGCG
TAGCGTAGCGGAGCGAACCACTCGATTGAGAGATCAATCGAGGAGTGAGCGTAGCGGAGCGAACC
ACTCGATTGAGAGATCAATCGAGGAGTGAGCGTAGCGAACCACTCGCCCGCCCCTCTATTCTCTC
TGGAGGGCGAGGACAGATATAGATATAGGGGGGACTCGTCCGCCCCTATATCTGAATGAGACTAT
CTGAATGAGACTATCTGAACTCTGAATGAGACTATCTGAACTCTG
Right flanking sequence: Indices 252687 -- 253186
GAATGAGACTCTCTGAACTCTGAATGAGACTATATATCTCGTAGCGAACCACTCGATTGAGAAAT
CAATCGAGGGCCGATAAGATCTATATAGGGAGGGGAGCCCTATATTCCATGGACACAATGAATCA
AATGAATCAATGTTCCGAGCTAATGAATCTTTCAATGTGAATCAATGTTATTACATACGTAATAT
GATCGGATCGTTCGATTGGAACAAATCAAATAGGATATGGCGGCACCACCAATATATGGATGGAT
GGATGGATGGATGGATGGATGGATGGATGGATGGATAGTGGCCAATGAACAACGGCACGATCACG
ACCACCCCGGGGCCCCCTCCCCCTAGATATAGATATCTATCTCTCTCTCTATATCTCTCTCTATC
TATCTCTATATCTATATCTCTCTCTATCTCTATATCTATCTCTATATCTCTATCTCTCTCTATAT
CTCTATCTCTCTATCATCTATCCATCGAGAGCCGGATAGAGAAAT
Found at i:252946 original size:4 final size:4
Alignment explanation
Indices: 252937--252982 Score: 92
Period size: 4 Copynumber: 11.5 Consensus size: 4
252927 CCACCAATAT
252937 ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG AT
1 ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG ATGG AT
252983 AGTGGCCAAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 42 1.00
ACGTcount: A:0.26, C:0.00, G:0.48, T:0.26
Consensus pattern (4 bp):
ATGG
Left flanking sequence: Indices 252437 -- 252936
TTGAGAGATCAATCGAGGAGTGAGCGTAGCGAACCACTCGCCCGCCCCTCTATTCTCTCTGGAGG
GCGAGGACAGATATAGATATAGGGGGGACTCGTCCGCCCCTATATCTGAATGAGACTATCTGAAT
GAGACTATCTGAACTCTGAATGAGACTATCTGAACTCTGTATCTCTCTCTCTATCTCTCTCTCTC
TATATCTCTATCTGTATCTCTCTCTCTATCTCTCTCTCTATCTCTATCTATATCTGAATGAGACT
CTCTGAACTCTGAATGAGACTATATATCTCGTAGCGAACCACTCGATTGAGAAATCAATCGAGGG
CCGATAAGATCTATATAGGGAGGGGAGCCCTATATTCCATGGACACAATGAATCAAATGAATCAA
TGTTCCGAGCTAATGAATCTTTCAATGTGAATCAATGTTATTACATACGTAATATGATCGGATCG
TTCGATTGGAACAAATCAAATAGGATATGGCGGCACCACCAATAT
Right flanking sequence: Indices 252983 -- 253482
AGTGGCCAATGAACAACGGCACGATCACGACCACCCCGGGGCCCCCTCCCCCTAGATATAGATAT
CTATCTCTCTCTCTATATCTCTCTCTATCTATCTCTATATCTATATCTCTCTCTATCTCTATATC
TATCTCTATATCTCTATCTCTCTCTATATCTCTATCTCTCTATCATCTATCCATCGAGAGCCGGA
TAGAGAAATAAATAAAGAAATAAAGAAATAAAGAAATAAGGGGCTCGGGTACACTCCTTGACTTG
ATAGCTCGTTAACCCGTATCAAGCTCTTGTATACCGTCTCGGGTACACTCCTTGATAGCTTGTAT
ACCGGTGTATACCGGTGTATACCGGTGTATACCGGTAGACCGGATTGAGAGCTTGGCTGTAGACC
GGCAAGCTCAAGCTTGACTGTATACCGTCTTGAGAGCTCGGGTATAGACTGTAGGCAAGCTCGGG
TACACTCCCCTATCGGACCGGATTGCCCTATGGGGTTAACCCGTT
Found at i:253060 original size:6 final size:6
Alignment explanation
Indices: 253047--253151 Score: 97
Period size: 6 Copynumber: 17.5 Consensus size: 6
253037 GATATAGATA
* * * * *
253047 TCTATC TCTCTC TCTATA TCTCTC TCTA-- TCTATC TCTATA TCTATA
1 TCTATC TCTATC TCTATC TCTATC TCTATC TCTATC TCTATC TCTATC
* * * *
253093 TCTCTC TCTATC TCTATA TCTATC TCTATATC TCTATC TCTCTC TATATC
1 TCTATC TCTATC TCTATC TCTATC TC--TATC TCTATC TCTATC TCTATC
253143 TCTATC TCT
1 TCTATC TCT
253152 CTATCATCTA
Statistics
Matches: 79, Mismatches: 16, Indels: 8
0.77 0.16 0.08
Matches are distributed among these distances:
4 4 0.05
6 69 0.87
8 6 0.08
ACGTcount: A:0.18, C:0.31, G:0.00, T:0.50
Consensus pattern (6 bp):
TCTATC
Left flanking sequence: Indices 252547 -- 253046
CTGAATGAGACTATCTGAATGAGACTATCTGAACTCTGAATGAGACTATCTGAACTCTGTATCTC
TCTCTCTATCTCTCTCTCTCTATATCTCTATCTGTATCTCTCTCTCTATCTCTCTCTCTATCTCT
ATCTATATCTGAATGAGACTCTCTGAACTCTGAATGAGACTATATATCTCGTAGCGAACCACTCG
ATTGAGAAATCAATCGAGGGCCGATAAGATCTATATAGGGAGGGGAGCCCTATATTCCATGGACA
CAATGAATCAAATGAATCAATGTTCCGAGCTAATGAATCTTTCAATGTGAATCAATGTTATTACA
TACGTAATATGATCGGATCGTTCGATTGGAACAAATCAAATAGGATATGGCGGCACCACCAATAT
ATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATAGTGGCCAATGAACAACGG
CACGATCACGACCACCCCGGGGCCCCCTCCCCCTAGATATAGATA
Right flanking sequence: Indices 253152 -- 253651
CTATCATCTATCCATCGAGAGCCGGATAGAGAAATAAATAAAGAAATAAAGAAATAAAGAAATAA
GGGGCTCGGGTACACTCCTTGACTTGATAGCTCGTTAACCCGTATCAAGCTCTTGTATACCGTCT
CGGGTACACTCCTTGATAGCTTGTATACCGGTGTATACCGGTGTATACCGGTGTATACCGGTAGA
CCGGATTGAGAGCTTGGCTGTAGACCGGCAAGCTCAAGCTTGACTGTATACCGTCTTGAGAGCTC
GGGTATAGACTGTAGGCAAGCTCGGGTACACTCCCCTATCGGACCGGATTGCCCTATGGGGTTAA
CCCGTTGAGAGCTTAAGATAGATGGTATTATATTATATTATATTATATTATATTATATTATATTA
TATTATATTATATAAGTAATACGATTGGCACTCCTCTATATAGATAGAGAGATAGAGAGATAGAT
AGATAGAGAGAGATATAGAGAGATAGATAGATAGATAGGGTCAGA
Found at i:253067 original size:18 final size:18
Alignment explanation
Indices: 253044--253163 Score: 109
Period size: 18 Copynumber: 6.5 Consensus size: 18
253034 CTAGATATAG
253044 ATATCTATCTCTCTCTCT
1 ATATCTATCTCTCTCTCT
*
253062 ATATCTCTCTCTATCTATCTCT
1 ATATCTATCTC--TC--TCTCT
*
253084 ATATCTATATCTCTCTCT
1 ATATCTATCTCTCTCTCT
* * *
253102 ATCTCTATATCTATCTCT
1 ATATCTATCTCTCTCTCT
* *
253120 ATATCTCTATCTCTCTCT
1 ATATCTATCTCTCTCTCT
*
253138 ATATC--TCTATCTCTCT
1 ATATCTATCTCTCTCTCT
253154 ATCATCTATC
1 AT-ATCTATC
253164 CATCGAGAGC
Statistics
Matches: 85, Mismatches: 10, Indels: 13
0.79 0.09 0.12
Matches are distributed among these distances:
16 11 0.13
17 3 0.04
18 51 0.60
19 2 0.02
20 4 0.05
22 14 0.16
ACGTcount: A:0.20, C:0.31, G:0.00, T:0.49
Consensus pattern (18 bp):
ATATCTATCTCTCTCTCT
Left flanking sequence: Indices 252544 -- 253043
TATCTGAATGAGACTATCTGAATGAGACTATCTGAACTCTGAATGAGACTATCTGAACTCTGTAT
CTCTCTCTCTATCTCTCTCTCTCTATATCTCTATCTGTATCTCTCTCTCTATCTCTCTCTCTATC
TCTATCTATATCTGAATGAGACTCTCTGAACTCTGAATGAGACTATATATCTCGTAGCGAACCAC
TCGATTGAGAAATCAATCGAGGGCCGATAAGATCTATATAGGGAGGGGAGCCCTATATTCCATGG
ACACAATGAATCAAATGAATCAATGTTCCGAGCTAATGAATCTTTCAATGTGAATCAATGTTATT
ACATACGTAATATGATCGGATCGTTCGATTGGAACAAATCAAATAGGATATGGCGGCACCACCAA
TATATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATAGTGGCCAATGAACAA
CGGCACGATCACGACCACCCCGGGGCCCCCTCCCCCTAGATATAG
Right flanking sequence: Indices 253164 -- 253663
CATCGAGAGCCGGATAGAGAAATAAATAAAGAAATAAAGAAATAAAGAAATAAGGGGCTCGGGTA
CACTCCTTGACTTGATAGCTCGTTAACCCGTATCAAGCTCTTGTATACCGTCTCGGGTACACTCC
TTGATAGCTTGTATACCGGTGTATACCGGTGTATACCGGTGTATACCGGTAGACCGGATTGAGAG
CTTGGCTGTAGACCGGCAAGCTCAAGCTTGACTGTATACCGTCTTGAGAGCTCGGGTATAGACTG
TAGGCAAGCTCGGGTACACTCCCCTATCGGACCGGATTGCCCTATGGGGTTAACCCGTTGAGAGC
TTAAGATAGATGGTATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATA
TAAGTAATACGATTGGCACTCCTCTATATAGATAGAGAGATAGAGAGATAGATAGATAGAGAGAG
ATATAGAGAGATAGATAGATAGATAGGGTCAGAGATCTATAGGGG
Found at i:253088 original size:8 final size:8
Alignment explanation
Indices: 253077--253160 Score: 68
Period size: 8 Copynumber: 10.6 Consensus size: 8
253067 TCTCTCTATC
253077 TATCTCTA
1 TATCTCTA
*
253085 TATCTATA
1 TATCTCTA
* *
253093 TCTCTCTC
1 TATCTCTA
253101 TATCTCTA
1 TATCTCTA
253109 TA--TC--
1 TATCTCTA
253113 TATCTCTA
1 TATCTCTA
253121 TATCTCTA
1 TATCTCTA
*
253129 TCTCTCTCTA
1 --TATCTCTA
253139 TATCTCTA
1 TATCTCTA
*
253147 TCTCTCTA
1 TATCTCTA
253155 TCATCT
1 T-ATCT
253161 ATCCATCGAG
Statistics
Matches: 59, Mismatches: 10, Indels: 13
0.72 0.12 0.16
Matches are distributed among these distances:
4 2 0.03
6 4 0.07
8 43 0.73
9 3 0.05
10 7 0.12
ACGTcount: A:0.20, C:0.30, G:0.00, T:0.50
Consensus pattern (8 bp):
TATCTCTA
Left flanking sequence: Indices 252577 -- 253076
GAACTCTGAATGAGACTATCTGAACTCTGTATCTCTCTCTCTATCTCTCTCTCTCTATATCTCTA
TCTGTATCTCTCTCTCTATCTCTCTCTCTATCTCTATCTATATCTGAATGAGACTCTCTGAACTC
TGAATGAGACTATATATCTCGTAGCGAACCACTCGATTGAGAAATCAATCGAGGGCCGATAAGAT
CTATATAGGGAGGGGAGCCCTATATTCCATGGACACAATGAATCAAATGAATCAATGTTCCGAGC
TAATGAATCTTTCAATGTGAATCAATGTTATTACATACGTAATATGATCGGATCGTTCGATTGGA
ACAAATCAAATAGGATATGGCGGCACCACCAATATATGGATGGATGGATGGATGGATGGATGGAT
GGATGGATGGATGGATAGTGGCCAATGAACAACGGCACGATCACGACCACCCCGGGGCCCCCTCC
CCCTAGATATAGATATCTATCTCTCTCTCTATATCTCTCTCTATC
Right flanking sequence: Indices 253161 -- 253660
ATCCATCGAGAGCCGGATAGAGAAATAAATAAAGAAATAAAGAAATAAAGAAATAAGGGGCTCGG
GTACACTCCTTGACTTGATAGCTCGTTAACCCGTATCAAGCTCTTGTATACCGTCTCGGGTACAC
TCCTTGATAGCTTGTATACCGGTGTATACCGGTGTATACCGGTGTATACCGGTAGACCGGATTGA
GAGCTTGGCTGTAGACCGGCAAGCTCAAGCTTGACTGTATACCGTCTTGAGAGCTCGGGTATAGA
CTGTAGGCAAGCTCGGGTACACTCCCCTATCGGACCGGATTGCCCTATGGGGTTAACCCGTTGAG
AGCTTAAGATAGATGGTATTATATTATATTATATTATATTATATTATATTATATTATATTATATT
ATATAAGTAATACGATTGGCACTCCTCTATATAGATAGAGAGATAGAGAGATAGATAGATAGAGA
GAGATATAGAGAGATAGATAGATAGATAGGGTCAGAGATCTATAG
Found at i:253200 original size:8 final size:8
Alignment explanation
Indices: 253187--253216 Score: 60
Period size: 8 Copynumber: 3.8 Consensus size: 8
253177 ATAGAGAAAT
253187 AAATAAAG
1 AAATAAAG
253195 AAATAAAG
1 AAATAAAG
253203 AAATAAAG
1 AAATAAAG
253211 AAATAA
1 AAATAA
253217 GGGGCTCGGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.10, T:0.13
Consensus pattern (8 bp):
AAATAAAG
Left flanking sequence: Indices 252687 -- 253186
GAATGAGACTCTCTGAACTCTGAATGAGACTATATATCTCGTAGCGAACCACTCGATTGAGAAAT
CAATCGAGGGCCGATAAGATCTATATAGGGAGGGGAGCCCTATATTCCATGGACACAATGAATCA
AATGAATCAATGTTCCGAGCTAATGAATCTTTCAATGTGAATCAATGTTATTACATACGTAATAT
GATCGGATCGTTCGATTGGAACAAATCAAATAGGATATGGCGGCACCACCAATATATGGATGGAT
GGATGGATGGATGGATGGATGGATGGATGGATGGATAGTGGCCAATGAACAACGGCACGATCACG
ACCACCCCGGGGCCCCCTCCCCCTAGATATAGATATCTATCTCTCTCTCTATATCTCTCTCTATC
TATCTCTATATCTATATCTCTCTCTATCTCTATATCTATCTCTATATCTCTATCTCTCTCTATAT
CTCTATCTCTCTATCATCTATCCATCGAGAGCCGGATAGAGAAAT
Right flanking sequence: Indices 253217 -- 253716
GGGGCTCGGGTACACTCCTTGACTTGATAGCTCGTTAACCCGTATCAAGCTCTTGTATACCGTCT
CGGGTACACTCCTTGATAGCTTGTATACCGGTGTATACCGGTGTATACCGGTGTATACCGGTAGA
CCGGATTGAGAGCTTGGCTGTAGACCGGCAAGCTCAAGCTTGACTGTATACCGTCTTGAGAGCTC
GGGTATAGACTGTAGGCAAGCTCGGGTACACTCCCCTATCGGACCGGATTGCCCTATGGGGTTAA
CCCGTTGAGAGCTTAAGATAGATGGTATTATATTATATTATATTATATTATATTATATTATATTA
TATTATATTATATAAGTAATACGATTGGCACTCCTCTATATAGATAGAGAGATAGAGAGATAGAT
AGATAGAGAGAGATATAGAGAGATAGATAGATAGATAGGGTCAGAGATCTATAGGGGGTCCTCAC
CCCGTTCTATCTAGATCTAGATAGAACTAGAGCTGCTGTATGGAT
Found at i:253318 original size:10 final size:10
Alignment explanation
Indices: 253303--253343 Score: 82
Period size: 10 Copynumber: 4.1 Consensus size: 10
253293 CTTGATAGCT
253303 TGTATACCGG
1 TGTATACCGG
253313 TGTATACCGG
1 TGTATACCGG
253323 TGTATACCGG
1 TGTATACCGG
253333 TGTATACCGG
1 TGTATACCGG
253343 T
1 T
253344 AGACCGGATT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.20, C:0.20, G:0.29, T:0.32
Consensus pattern (10 bp):
TGTATACCGG
Left flanking sequence: Indices 252803 -- 253302
GACACAATGAATCAAATGAATCAATGTTCCGAGCTAATGAATCTTTCAATGTGAATCAATGTTAT
TACATACGTAATATGATCGGATCGTTCGATTGGAACAAATCAAATAGGATATGGCGGCACCACCA
ATATATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATAGTGGCCAATGAACA
ACGGCACGATCACGACCACCCCGGGGCCCCCTCCCCCTAGATATAGATATCTATCTCTCTCTCTA
TATCTCTCTCTATCTATCTCTATATCTATATCTCTCTCTATCTCTATATCTATCTCTATATCTCT
ATCTCTCTCTATATCTCTATCTCTCTATCATCTATCCATCGAGAGCCGGATAGAGAAATAAATAA
AGAAATAAAGAAATAAAGAAATAAGGGGCTCGGGTACACTCCTTGACTTGATAGCTCGTTAACCC
GTATCAAGCTCTTGTATACCGTCTCGGGTACACTCCTTGATAGCT
Right flanking sequence: Indices 253344 -- 253843
AGACCGGATTGAGAGCTTGGCTGTAGACCGGCAAGCTCAAGCTTGACTGTATACCGTCTTGAGAG
CTCGGGTATAGACTGTAGGCAAGCTCGGGTACACTCCCCTATCGGACCGGATTGCCCTATGGGGT
TAACCCGTTGAGAGCTTAAGATAGATGGTATTATATTATATTATATTATATTATATTATATTATA
TTATATTATATTATATAAGTAATACGATTGGCACTCCTCTATATAGATAGAGAGATAGAGAGATA
GATAGATAGAGAGAGATATAGAGAGATAGATAGATAGATAGGGTCAGAGATCTATAGGGGGTCCT
CACCCCGTTCTATCTAGATCTAGATAGAACTAGAGCTGCTGTATGGATATATAGGGGGAGAATAG
AGATAGGGAGATAGGGCTATAGGTGGTCGACCCCCCCCCCTCTCTATTCTATCTTATCTCGGCTC
CCATATCTATATAGGGGGGGCCATATAGATCTATAGGGCAGATAT
Found at i:253512 original size:5 final size:5
Alignment explanation
Indices: 253502--253554 Score: 106
Period size: 5 Copynumber: 10.6 Consensus size: 5
253492 AGATAGATGG
253502 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
1 TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA TATTA
253552 TAT
1 TAT
253555 AAGTAATACG
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 48 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (5 bp):
TATTA
Left flanking sequence: Indices 253002 -- 253501
CACGATCACGACCACCCCGGGGCCCCCTCCCCCTAGATATAGATATCTATCTCTCTCTCTATATC
TCTCTCTATCTATCTCTATATCTATATCTCTCTCTATCTCTATATCTATCTCTATATCTCTATCT
CTCTCTATATCTCTATCTCTCTATCATCTATCCATCGAGAGCCGGATAGAGAAATAAATAAAGAA
ATAAAGAAATAAAGAAATAAGGGGCTCGGGTACACTCCTTGACTTGATAGCTCGTTAACCCGTAT
CAAGCTCTTGTATACCGTCTCGGGTACACTCCTTGATAGCTTGTATACCGGTGTATACCGGTGTA
TACCGGTGTATACCGGTAGACCGGATTGAGAGCTTGGCTGTAGACCGGCAAGCTCAAGCTTGACT
GTATACCGTCTTGAGAGCTCGGGTATAGACTGTAGGCAAGCTCGGGTACACTCCCCTATCGGACC
GGATTGCCCTATGGGGTTAACCCGTTGAGAGCTTAAGATAGATGG
Right flanking sequence: Indices 253555 -- 254054
AAGTAATACGATTGGCACTCCTCTATATAGATAGAGAGATAGAGAGATAGATAGATAGAGAGAGA
TATAGAGAGATAGATAGATAGATAGGGTCAGAGATCTATAGGGGGTCCTCACCCCGTTCTATCTA
GATCTAGATAGAACTAGAGCTGCTGTATGGATATATAGGGGGAGAATAGAGATAGGGAGATAGGG
CTATAGGTGGTCGACCCCCCCCCCTCTCTATTCTATCTTATCTCGGCTCCCATATCTATATAGGG
GGGGCCATATAGATCTATAGGGCAGATATAGATATAGGGGTCTCCGCTATATAGACATATGGCTA
GCTGACTGATTGACTAACGGACTAACTGACTAACTAACATCCAAAGATCTCTATATAGGGTCGAG
GGCCCTATCTAACTATCTGGGCCCTATCTATATATGGCATGGCTTTTGACTGATCGAGTAGCTGA
ACCCTAGCCCAACAGGTCACCGGACTCTATATTTCTCACTTGCCC
Found at i:253606 original size:4 final size:4
Alignment explanation
Indices: 253581--253644 Score: 74
Period size: 4 Copynumber: 16.0 Consensus size: 4
253571 ACTCCTCTAT
* * * * * *
253581 ATAG ATAG AGAG ATAG AGAG ATAG ATAG ATAG AGAG AGAT ATAG AGAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
253629 ATAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG
253645 GGTCAGAGAT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 50 1.00
ACGTcount: A:0.50, C:0.00, G:0.31, T:0.19
Consensus pattern (4 bp):
ATAG
Left flanking sequence: Indices 253081 -- 253580
TCTATATCTATATCTCTCTCTATCTCTATATCTATCTCTATATCTCTATCTCTCTCTATATCTCT
ATCTCTCTATCATCTATCCATCGAGAGCCGGATAGAGAAATAAATAAAGAAATAAAGAAATAAAG
AAATAAGGGGCTCGGGTACACTCCTTGACTTGATAGCTCGTTAACCCGTATCAAGCTCTTGTATA
CCGTCTCGGGTACACTCCTTGATAGCTTGTATACCGGTGTATACCGGTGTATACCGGTGTATACC
GGTAGACCGGATTGAGAGCTTGGCTGTAGACCGGCAAGCTCAAGCTTGACTGTATACCGTCTTGA
GAGCTCGGGTATAGACTGTAGGCAAGCTCGGGTACACTCCCCTATCGGACCGGATTGCCCTATGG
GGTTAACCCGTTGAGAGCTTAAGATAGATGGTATTATATTATATTATATTATATTATATTATATT
ATATTATATTATATTATATAAGTAATACGATTGGCACTCCTCTAT
Right flanking sequence: Indices 253645 -- 254144
GGTCAGAGATCTATAGGGGGTCCTCACCCCGTTCTATCTAGATCTAGATAGAACTAGAGCTGCTG
TATGGATATATAGGGGGAGAATAGAGATAGGGAGATAGGGCTATAGGTGGTCGACCCCCCCCCCT
CTCTATTCTATCTTATCTCGGCTCCCATATCTATATAGGGGGGGCCATATAGATCTATAGGGCAG
ATATAGATATAGGGGTCTCCGCTATATAGACATATGGCTAGCTGACTGATTGACTAACGGACTAA
CTGACTAACTAACATCCAAAGATCTCTATATAGGGTCGAGGGCCCTATCTAACTATCTGGGCCCT
ATCTATATATGGCATGGCTTTTGACTGATCGAGTAGCTGAACCCTAGCCCAACAGGTCACCGGAC
TCTATATTTCTCACTTGCCCCATAGATATAGAGGCTTACATATATAGACGTAGATCTATGTCTAT
GCGGTGTTTGGATTGATTGATCCTCACCAGCGGGATGGATGGATG
Found at i:253606 original size:12 final size:12
Alignment explanation
Indices: 253581--253644 Score: 83
Period size: 12 Copynumber: 5.3 Consensus size: 12
253571 ACTCCTCTAT
253581 ATAGATAGAGAG
1 ATAGATAGAGAG
* *
253593 ATAGAGAGATAG
1 ATAGATAGAGAG
253605 ATAGATAGAGAG
1 ATAGATAGAGAG
* *
253617 AGATATAGAGAG
1 ATAGATAGAGAG
*
253629 ATAGATAGATAG
1 ATAGATAGAGAG
253641 ATAG
1 ATAG
253645 GGTCAGAGAT
Statistics
Matches: 43, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 43 1.00
ACGTcount: A:0.50, C:0.00, G:0.31, T:0.19
Consensus pattern (12 bp):
ATAGATAGAGAG
Left flanking sequence: Indices 253081 -- 253580
TCTATATCTATATCTCTCTCTATCTCTATATCTATCTCTATATCTCTATCTCTCTCTATATCTCT
ATCTCTCTATCATCTATCCATCGAGAGCCGGATAGAGAAATAAATAAAGAAATAAAGAAATAAAG
AAATAAGGGGCTCGGGTACACTCCTTGACTTGATAGCTCGTTAACCCGTATCAAGCTCTTGTATA
CCGTCTCGGGTACACTCCTTGATAGCTTGTATACCGGTGTATACCGGTGTATACCGGTGTATACC
GGTAGACCGGATTGAGAGCTTGGCTGTAGACCGGCAAGCTCAAGCTTGACTGTATACCGTCTTGA
GAGCTCGGGTATAGACTGTAGGCAAGCTCGGGTACACTCCCCTATCGGACCGGATTGCCCTATGG
GGTTAACCCGTTGAGAGCTTAAGATAGATGGTATTATATTATATTATATTATATTATATTATATT
ATATTATATTATATTATATAAGTAATACGATTGGCACTCCTCTAT
Right flanking sequence: Indices 253645 -- 254144
GGTCAGAGATCTATAGGGGGTCCTCACCCCGTTCTATCTAGATCTAGATAGAACTAGAGCTGCTG
TATGGATATATAGGGGGAGAATAGAGATAGGGAGATAGGGCTATAGGTGGTCGACCCCCCCCCCT
CTCTATTCTATCTTATCTCGGCTCCCATATCTATATAGGGGGGGCCATATAGATCTATAGGGCAG
ATATAGATATAGGGGTCTCCGCTATATAGACATATGGCTAGCTGACTGATTGACTAACGGACTAA
CTGACTAACTAACATCCAAAGATCTCTATATAGGGTCGAGGGCCCTATCTAACTATCTGGGCCCT
ATCTATATATGGCATGGCTTTTGACTGATCGAGTAGCTGAACCCTAGCCCAACAGGTCACCGGAC
TCTATATTTCTCACTTGCCCCATAGATATAGAGGCTTACATATATAGACGTAGATCTATGTCTAT
GCGGTGTTTGGATTGATTGATCCTCACCAGCGGGATGGATGGATG
Found at i:253624 original size:28 final size:28
Alignment explanation
Indices: 253581--253641 Score: 104
Period size: 28 Copynumber: 2.2 Consensus size: 28
253571 ACTCCTCTAT
*
253581 ATAGATAGAGAGATAGAGAGATAGATAG
1 ATAGAGAGAGAGATAGAGAGATAGATAG
*
253609 ATAGAGAGAGATATAGAGAGATAGATAG
1 ATAGAGAGAGAGATAGAGAGATAGATAG
253637 ATAGA
1 ATAGA
253642 TAGGGTCAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.31, T:0.18
Consensus pattern (28 bp):
ATAGAGAGAGAGATAGAGAGATAGATAG
Left flanking sequence: Indices 253081 -- 253580
TCTATATCTATATCTCTCTCTATCTCTATATCTATCTCTATATCTCTATCTCTCTCTATATCTCT
ATCTCTCTATCATCTATCCATCGAGAGCCGGATAGAGAAATAAATAAAGAAATAAAGAAATAAAG
AAATAAGGGGCTCGGGTACACTCCTTGACTTGATAGCTCGTTAACCCGTATCAAGCTCTTGTATA
CCGTCTCGGGTACACTCCTTGATAGCTTGTATACCGGTGTATACCGGTGTATACCGGTGTATACC
GGTAGACCGGATTGAGAGCTTGGCTGTAGACCGGCAAGCTCAAGCTTGACTGTATACCGTCTTGA
GAGCTCGGGTATAGACTGTAGGCAAGCTCGGGTACACTCCCCTATCGGACCGGATTGCCCTATGG
GGTTAACCCGTTGAGAGCTTAAGATAGATGGTATTATATTATATTATATTATATTATATTATATT
ATATTATATTATATTATATAAGTAATACGATTGGCACTCCTCTAT
Right flanking sequence: Indices 253642 -- 254141
TAGGGTCAGAGATCTATAGGGGGTCCTCACCCCGTTCTATCTAGATCTAGATAGAACTAGAGCTG
CTGTATGGATATATAGGGGGAGAATAGAGATAGGGAGATAGGGCTATAGGTGGTCGACCCCCCCC
CCTCTCTATTCTATCTTATCTCGGCTCCCATATCTATATAGGGGGGGCCATATAGATCTATAGGG
CAGATATAGATATAGGGGTCTCCGCTATATAGACATATGGCTAGCTGACTGATTGACTAACGGAC
TAACTGACTAACTAACATCCAAAGATCTCTATATAGGGTCGAGGGCCCTATCTAACTATCTGGGC
CCTATCTATATATGGCATGGCTTTTGACTGATCGAGTAGCTGAACCCTAGCCCAACAGGTCACCG
GACTCTATATTTCTCACTTGCCCCATAGATATAGAGGCTTACATATATAGACGTAGATCTATGTC
TATGCGGTGTTTGGATTGATTGATCCTCACCAGCGGGATGGATGG
Found at i:254217 original size:13 final size:13
Alignment explanation
Indices: 254199--254226 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
254189 CTATAGAGAG
254199 ATATGGCTGATCT
1 ATATGGCTGATCT
254212 ATATGGCTGATCT
1 ATATGGCTGATCT
254225 AT
1 AT
254227 GCCTATGCGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.25, C:0.14, G:0.21, T:0.39
Consensus pattern (13 bp):
ATATGGCTGATCT
Left flanking sequence: Indices 253699 -- 254198
TAGAGCTGCTGTATGGATATATAGGGGGAGAATAGAGATAGGGAGATAGGGCTATAGGTGGTCGA
CCCCCCCCCCTCTCTATTCTATCTTATCTCGGCTCCCATATCTATATAGGGGGGGCCATATAGAT
CTATAGGGCAGATATAGATATAGGGGTCTCCGCTATATAGACATATGGCTAGCTGACTGATTGAC
TAACGGACTAACTGACTAACTAACATCCAAAGATCTCTATATAGGGTCGAGGGCCCTATCTAACT
ATCTGGGCCCTATCTATATATGGCATGGCTTTTGACTGATCGAGTAGCTGAACCCTAGCCCAACA
GGTCACCGGACTCTATATTTCTCACTTGCCCCATAGATATAGAGGCTTACATATATAGACGTAGA
TCTATGTCTATGCGGTGTTTGGATTGATTGATCCTCACCAGCGGGATGGATGGATGGATGGGTAT
GTGCGGACGGCCCCATAGATATCTATTTGGTTGCCCTATAGAGAG
Right flanking sequence: Indices 254227 -- 254726
GCCTATGCGGTAAGATAAGATGTCGGATTGATCCTCACGTATATGCGGGCCAACTGAACTATACA
CAGTCGAGGAGCCCCCCTATCTTCTCTATATATGGGCGGAGTATAGTCGAGTCGTCTATCTGGGG
TGGGGGGGGCTAGGCCTACTAGATATAGCTGGCCCCCGCTCGACCATATATATATATATATAGAA
TATATATATCACAGGACCCTATAGAATGATAATGGCGCCCGGATCTGATCTCCCATATAAGAGAG
AGGGGATGGGGCCATCTCTCTATATCTATCTATCTATCTATCTATCTATATCTCTCTCTATCTCT
CTATCTATATCTCTATCTATCTCTCTATCTATATCTCTATCTGAATGAGACTATCTATCTCCATC
TCTATCTATCTATCGGGGGTAGGTCGACTATCTATTCGGAGGAGCCCATCTATATTCGTTCGGGG
GGGCCCCTTTCTGTTGTCCCACTCCAACCCTATATCATCTAGCTC
Found at i:254526 original size:12 final size:12
Alignment explanation
Indices: 254500--254593 Score: 120
Period size: 12 Copynumber: 8.0 Consensus size: 12
254490 GGATGGGGCC
254500 ATCTCTCTA--T
1 ATCTCTCTATCT
*
254510 ATCTATCTATCT
1 ATCTCTCTATCT
*
254522 ATCTATCTATCT
1 ATCTCTCTATCT
* *
254534 ATATCTCTCTCT
1 ATCTCTCTATCT
254546 ATCTCTCTATCT
1 ATCTCTCTATCT
*
254558 ATATCTCTATCT
1 ATCTCTCTATCT
254570 ATCTCTCTATCT
1 ATCTCTCTATCT
*
254582 ATATCTCTATCT
1 ATCTCTCTATCT
254594 GAATGAGACT
Statistics
Matches: 73, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
10 8 0.11
12 65 0.89
ACGTcount: A:0.21, C:0.29, G:0.00, T:0.50
Consensus pattern (12 bp):
ATCTCTCTATCT
Left flanking sequence: Indices 254000 -- 254499
GAGTAGCTGAACCCTAGCCCAACAGGTCACCGGACTCTATATTTCTCACTTGCCCCATAGATATA
GAGGCTTACATATATAGACGTAGATCTATGTCTATGCGGTGTTTGGATTGATTGATCCTCACCAG
CGGGATGGATGGATGGATGGGTATGTGCGGACGGCCCCATAGATATCTATTTGGTTGCCCTATAG
AGAGATATGGCTGATCTATATGGCTGATCTATGCCTATGCGGTAAGATAAGATGTCGGATTGATC
CTCACGTATATGCGGGCCAACTGAACTATACACAGTCGAGGAGCCCCCCTATCTTCTCTATATAT
GGGCGGAGTATAGTCGAGTCGTCTATCTGGGGTGGGGGGGGCTAGGCCTACTAGATATAGCTGGC
CCCCGCTCGACCATATATATATATATATAGAATATATATATCACAGGACCCTATAGAATGATAAT
GGCGCCCGGATCTGATCTCCCATATAAGAGAGAGGGGATGGGGCC
Right flanking sequence: Indices 254594 -- 255093
GAATGAGACTATCTATCTCCATCTCTATCTATCTATCGGGGGTAGGTCGACTATCTATTCGGAGG
AGCCCATCTATATTCGTTCGGGGGGGCCCCTTTCTGTTGTCCCACTCCAACCCTATATCATCTAG
CTCCATACAGGATAGAGGTACGATAGATAGCCGGCCCAACTAGGGATAGATAGGGGCATGAGATA
GATAGGGGGTTGACTCATGACCCGGAGTCGGTCGGGTACAAAGAAATCTATATGGCGGTTGGGCC
CTATCCTATAGATCTTATCATGAAGCCACTCTATATAGAACTAGGAAGAGATTCCCCTCGCCATA
TATATCTAATCCCCCATCTATATCTAGATCTATATCTGGATCTCCCGACCCCCTCCCCCTCCCCC
TCTATATAGAACTGATATGGGATATGGGGCCCTCGATCTGCGACAAGAAGAGATTCCCCTCGATC
TCTGTTCCCCAAGATAGAAGATATACCCCCCCCGACCCAACCAGA
Found at i:254554 original size:24 final size:24
Alignment explanation
Indices: 254505--254593 Score: 142
Period size: 24 Copynumber: 3.6 Consensus size: 24
254495 GGGCCATCTC
*
254505 TCTATATCTATCTATCTATCTATCTA
1 TCTATATC--TCTATCTATCTCTCTA
*
254531 TCTATATCTCTCTCTATCTCTCTA
1 TCTATATCTCTATCTATCTCTCTA
254555 TCTATATCTCTATCTATCTCTCTA
1 TCTATATCTCTATCTATCTCTCTA
254579 TCTATATCTCTATCT
1 TCTATATCTCTATCT
254594 GAATGAGACT
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
24 52 0.87
26 8 0.13
ACGTcount: A:0.21, C:0.28, G:0.00, T:0.51
Consensus pattern (24 bp):
TCTATATCTCTATCTATCTCTCTA
Left flanking sequence: Indices 254005 -- 254504
GCTGAACCCTAGCCCAACAGGTCACCGGACTCTATATTTCTCACTTGCCCCATAGATATAGAGGC
TTACATATATAGACGTAGATCTATGTCTATGCGGTGTTTGGATTGATTGATCCTCACCAGCGGGA
TGGATGGATGGATGGGTATGTGCGGACGGCCCCATAGATATCTATTTGGTTGCCCTATAGAGAGA
TATGGCTGATCTATATGGCTGATCTATGCCTATGCGGTAAGATAAGATGTCGGATTGATCCTCAC
GTATATGCGGGCCAACTGAACTATACACAGTCGAGGAGCCCCCCTATCTTCTCTATATATGGGCG
GAGTATAGTCGAGTCGTCTATCTGGGGTGGGGGGGGCTAGGCCTACTAGATATAGCTGGCCCCCG
CTCGACCATATATATATATATATAGAATATATATATCACAGGACCCTATAGAATGATAATGGCGC
CCGGATCTGATCTCCCATATAAGAGAGAGGGGATGGGGCCATCTC
Right flanking sequence: Indices 254594 -- 255093
GAATGAGACTATCTATCTCCATCTCTATCTATCTATCGGGGGTAGGTCGACTATCTATTCGGAGG
AGCCCATCTATATTCGTTCGGGGGGGCCCCTTTCTGTTGTCCCACTCCAACCCTATATCATCTAG
CTCCATACAGGATAGAGGTACGATAGATAGCCGGCCCAACTAGGGATAGATAGGGGCATGAGATA
GATAGGGGGTTGACTCATGACCCGGAGTCGGTCGGGTACAAAGAAATCTATATGGCGGTTGGGCC
CTATCCTATAGATCTTATCATGAAGCCACTCTATATAGAACTAGGAAGAGATTCCCCTCGCCATA
TATATCTAATCCCCCATCTATATCTAGATCTATATCTGGATCTCCCGACCCCCTCCCCCTCCCCC
TCTATATAGAACTGATATGGGATATGGGGCCCTCGATCTGCGACAAGAAGAGATTCCCCTCGATC
TCTGTTCCCCAAGATAGAAGATATACCCCCCCCGACCCAACCAGA
Found at i:254611 original size:4 final size:4
Alignment explanation
Indices: 254509--254593 Score: 89
Period size: 4 Copynumber: 21.2 Consensus size: 4
254499 CATCTCTCTA
* * * *
254509 TATC TATC TATC TATC TATC TATC TATA TCTC TCTC TATC TCTC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
* * * * *
254557 TATA TCTC TATC TATC TCTC TATC TATA TCTC TATC T
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC T
254594 GAATGAGACT
Statistics
Matches: 65, Mismatches: 16, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
4 65 1.00
ACGTcount: A:0.21, C:0.28, G:0.00, T:0.51
Consensus pattern (4 bp):
TATC
Left flanking sequence: Indices 254009 -- 254508
AACCCTAGCCCAACAGGTCACCGGACTCTATATTTCTCACTTGCCCCATAGATATAGAGGCTTAC
ATATATAGACGTAGATCTATGTCTATGCGGTGTTTGGATTGATTGATCCTCACCAGCGGGATGGA
TGGATGGATGGGTATGTGCGGACGGCCCCATAGATATCTATTTGGTTGCCCTATAGAGAGATATG
GCTGATCTATATGGCTGATCTATGCCTATGCGGTAAGATAAGATGTCGGATTGATCCTCACGTAT
ATGCGGGCCAACTGAACTATACACAGTCGAGGAGCCCCCCTATCTTCTCTATATATGGGCGGAGT
ATAGTCGAGTCGTCTATCTGGGGTGGGGGGGGCTAGGCCTACTAGATATAGCTGGCCCCCGCTCG
ACCATATATATATATATATAGAATATATATATCACAGGACCCTATAGAATGATAATGGCGCCCGG
ATCTGATCTCCCATATAAGAGAGAGGGGATGGGGCCATCTCTCTA
Right flanking sequence: Indices 254594 -- 255093
GAATGAGACTATCTATCTCCATCTCTATCTATCTATCGGGGGTAGGTCGACTATCTATTCGGAGG
AGCCCATCTATATTCGTTCGGGGGGGCCCCTTTCTGTTGTCCCACTCCAACCCTATATCATCTAG
CTCCATACAGGATAGAGGTACGATAGATAGCCGGCCCAACTAGGGATAGATAGGGGCATGAGATA
GATAGGGGGTTGACTCATGACCCGGAGTCGGTCGGGTACAAAGAAATCTATATGGCGGTTGGGCC
CTATCCTATAGATCTTATCATGAAGCCACTCTATATAGAACTAGGAAGAGATTCCCCTCGCCATA
TATATCTAATCCCCCATCTATATCTAGATCTATATCTGGATCTCCCGACCCCCTCCCCCTCCCCC
TCTATATAGAACTGATATGGGATATGGGGCCCTCGATCTGCGACAAGAAGAGATTCCCCTCGATC
TCTGTTCCCCAAGATAGAAGATATACCCCCCCCGACCCAACCAGA
Found at i:254629 original size:24 final size:24
Alignment explanation
Indices: 254517--254630 Score: 129
Period size: 24 Copynumber: 4.5 Consensus size: 24
254507 TATATCTATC
254517 TATCTATCTATCTATCTATATCTC
1 TATCTATCTATCTATCTATATCTC
* *
254541 TCTCTATCTCTCTATCTATATCTC
1 TATCTATCTATCTATCTATATCTC
*
254565 TATCTATCTCTCTATCTATATCTC
1 TATCTATCTATCTATCTATATCTC
**
254589 TATCTGAATGAGACTATCTATCTCCATCTC
1 TATCT--AT----CTATCTATCTATATCTC
254619 TATCTATCTATC
1 TATCTATCTATC
254631 GGGGGTAGGT
Statistics
Matches: 78, Mismatches: 6, Indels: 12
0.81 0.06 0.12
Matches are distributed among these distances:
24 55 0.71
26 2 0.03
28 2 0.03
30 19 0.24
ACGTcount: A:0.23, C:0.28, G:0.03, T:0.46
Consensus pattern (24 bp):
TATCTATCTATCTATCTATATCTC
Left flanking sequence: Indices 254017 -- 254516
CCCAACAGGTCACCGGACTCTATATTTCTCACTTGCCCCATAGATATAGAGGCTTACATATATAG
ACGTAGATCTATGTCTATGCGGTGTTTGGATTGATTGATCCTCACCAGCGGGATGGATGGATGGA
TGGGTATGTGCGGACGGCCCCATAGATATCTATTTGGTTGCCCTATAGAGAGATATGGCTGATCT
ATATGGCTGATCTATGCCTATGCGGTAAGATAAGATGTCGGATTGATCCTCACGTATATGCGGGC
CAACTGAACTATACACAGTCGAGGAGCCCCCCTATCTTCTCTATATATGGGCGGAGTATAGTCGA
GTCGTCTATCTGGGGTGGGGGGGGCTAGGCCTACTAGATATAGCTGGCCCCCGCTCGACCATATA
TATATATATATAGAATATATATATCACAGGACCCTATAGAATGATAATGGCGCCCGGATCTGATC
TCCCATATAAGAGAGAGGGGATGGGGCCATCTCTCTATATCTATC
Right flanking sequence: Indices 254631 -- 255130
GGGGGTAGGTCGACTATCTATTCGGAGGAGCCCATCTATATTCGTTCGGGGGGGCCCCTTTCTGT
TGTCCCACTCCAACCCTATATCATCTAGCTCCATACAGGATAGAGGTACGATAGATAGCCGGCCC
AACTAGGGATAGATAGGGGCATGAGATAGATAGGGGGTTGACTCATGACCCGGAGTCGGTCGGGT
ACAAAGAAATCTATATGGCGGTTGGGCCCTATCCTATAGATCTTATCATGAAGCCACTCTATATA
GAACTAGGAAGAGATTCCCCTCGCCATATATATCTAATCCCCCATCTATATCTAGATCTATATCT
GGATCTCCCGACCCCCTCCCCCTCCCCCTCTATATAGAACTGATATGGGATATGGGGCCCTCGAT
CTGCGACAAGAAGAGATTCCCCTCGATCTCTGTTCCCCAAGATAGAAGATATACCCCCCCCGACC
CAACCAGATCCAGATATAGATCTATATCTATATATCTATATCTAT
Found at i:255122 original size:14 final size:14
Alignment explanation
Indices: 255100--255133 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
255090 CAGATCCAGA
*
255100 TATAGATCTATATC
1 TATATATCTATATC
255114 TATATATCTATATC
1 TATATATCTATATC
255128 TATATA
1 TATATA
255134 GAATAATATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.38, C:0.12, G:0.03, T:0.47
Consensus pattern (14 bp):
TATATATCTATATC
Left flanking sequence: Indices 254600 -- 255099
GACTATCTATCTCCATCTCTATCTATCTATCGGGGGTAGGTCGACTATCTATTCGGAGGAGCCCA
TCTATATTCGTTCGGGGGGGCCCCTTTCTGTTGTCCCACTCCAACCCTATATCATCTAGCTCCAT
ACAGGATAGAGGTACGATAGATAGCCGGCCCAACTAGGGATAGATAGGGGCATGAGATAGATAGG
GGGTTGACTCATGACCCGGAGTCGGTCGGGTACAAAGAAATCTATATGGCGGTTGGGCCCTATCC
TATAGATCTTATCATGAAGCCACTCTATATAGAACTAGGAAGAGATTCCCCTCGCCATATATATC
TAATCCCCCATCTATATCTAGATCTATATCTGGATCTCCCGACCCCCTCCCCCTCCCCCTCTATA
TAGAACTGATATGGGATATGGGGCCCTCGATCTGCGACAAGAAGAGATTCCCCTCGATCTCTGTT
CCCCAAGATAGAAGATATACCCCCCCCGACCCAACCAGATCCAGA
Right flanking sequence: Indices 255134 -- 255633
GAATAATATAGAATATCTATAGGGAGACGCCTCTAACTAGAGTAGGGGTAAGCCGGCCTATCTAT
ATCCAAACCTCCCAACCCCAAGAGATCTGGGCGCCCCCCCCCCCCTATAGAATAGATCTTATCTA
TCTGGGCCTACGGTAATAACTCATTCTCCATCATCAGTCATCGGTAACTCGACTGATATGATATC
AGTCATCATGTTACGTATATAGTATGGACTGCATCACTATAGTCGGCACCCCATATAGATAGGGG
AGAGGGCAGGGCTATATGGCGACCCCTATCTTCTTCTATCGTCTTCGAGTGTGGACTCTAGATGG
CCCCATAGATAGAAAGGGCGGGCGGGCCATATAGAGAGTTGCCCATACACGGTGATGCGGCCCAT
ACTCCCCTCCCCTATATAGATATTAGATATTGGCCCCCCCCCTCTCTATATATCTTCTATATAGC
TGATGTCTATAAGGGAAGGGGGCCCATCCTGTATAGAGAGTAGGG
Found at i:255719 original size:14 final size:14
Alignment explanation
Indices: 255700--255742 Score: 59
Period size: 14 Copynumber: 3.1 Consensus size: 14
255690 TACCAACTAG
255700 ATAGCTATATAGCT
1 ATAGCTATATAGCT
* *
255714 ATAGCTAGATACCT
1 ATAGCTATATAGCT
*
255728 ATAGATATATAGCT
1 ATAGCTATATAGCT
255742 A
1 A
255743 GATAGACTAT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.33
Consensus pattern (14 bp):
ATAGCTATATAGCT
Left flanking sequence: Indices 255200 -- 255699
TCCAAACCTCCCAACCCCAAGAGATCTGGGCGCCCCCCCCCCCCTATAGAATAGATCTTATCTAT
CTGGGCCTACGGTAATAACTCATTCTCCATCATCAGTCATCGGTAACTCGACTGATATGATATCA
GTCATCATGTTACGTATATAGTATGGACTGCATCACTATAGTCGGCACCCCATATAGATAGGGGA
GAGGGCAGGGCTATATGGCGACCCCTATCTTCTTCTATCGTCTTCGAGTGTGGACTCTAGATGGC
CCCATAGATAGAAAGGGCGGGCGGGCCATATAGAGAGTTGCCCATACACGGTGATGCGGCCCATA
CTCCCCTCCCCTATATAGATATTAGATATTGGCCCCCCCCCTCTCTATATATCTTCTATATAGCT
GATGTCTATAAGGGAAGGGGGCCCATCCTGTATAGAGAGTAGGGGGTCATAGAGAGATATGGCCC
CCTCTATAGATCTTAGATTCTCTTTATAGACGTTATACCAACTAG
Right flanking sequence: Indices 255743 -- 256242
GATAGACTATAGGCTGTTATCCGAACCGTAATATAATATAATATAATATAATATAATATAATATA
ATATATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGA
TGAGCCCTCCCCTCTATATACTCTATAGACTACCCTCTCCCTAGCTACACTGGTCCCTTCCCTCT
ACAACCCCTCCCTCACTCATAGTCCCCTTATCGCTCTCCGGTTACCACGTTTATCTCTGTCCAGA
TAGTGCCACCAGTTCCCGTGCCGATACCCCCCCCGGCGAATAGGGGAGAGATAGTGCCCTTCACC
CTCACCCTCTCATCCATCTCTATCCATCTCTATCCAGCAACCGAACCAAACACAAAGGGGGGCCA
CAGCGAACAGCGGCCCAGCACGAGTAAGATATAGAGTTCCGATCCGCCCGGCCCAGCCACACTCT
CTTACCGGTAAAGGGGAGGTGGGCCAGGGCCGGAAGCCTTATATC
Found at i:255721 original size:22 final size:22
Alignment explanation
Indices: 255696--255754 Score: 73
Period size: 22 Copynumber: 2.6 Consensus size: 22
255686 GTTATACCAA
* *
255696 CTAGATAGCTATATAGCTATAG
1 CTAGATAGCTATAGAGATATAG
* *
255718 CTAGATACCTATAGATATATAG
1 CTAGATAGCTATAGAGATATAG
255740 CTAGATAGACTATAG
1 CTAGATAG-CTATAG
255755 GCTGTTATCC
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
22 25 0.81
23 6 0.19
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.31
Consensus pattern (22 bp):
CTAGATAGCTATAGAGATATAG
Left flanking sequence: Indices 255196 -- 255695
TATATCCAAACCTCCCAACCCCAAGAGATCTGGGCGCCCCCCCCCCCCTATAGAATAGATCTTAT
CTATCTGGGCCTACGGTAATAACTCATTCTCCATCATCAGTCATCGGTAACTCGACTGATATGAT
ATCAGTCATCATGTTACGTATATAGTATGGACTGCATCACTATAGTCGGCACCCCATATAGATAG
GGGAGAGGGCAGGGCTATATGGCGACCCCTATCTTCTTCTATCGTCTTCGAGTGTGGACTCTAGA
TGGCCCCATAGATAGAAAGGGCGGGCGGGCCATATAGAGAGTTGCCCATACACGGTGATGCGGCC
CATACTCCCCTCCCCTATATAGATATTAGATATTGGCCCCCCCCCTCTCTATATATCTTCTATAT
AGCTGATGTCTATAAGGGAAGGGGGCCCATCCTGTATAGAGAGTAGGGGGTCATAGAGAGATATG
GCCCCCTCTATAGATCTTAGATTCTCTTTATAGACGTTATACCAA
Right flanking sequence: Indices 255755 -- 256254
GCTGTTATCCGAACCGTAATATAATATAATATAATATAATATAATATAATATAATATATGAGATG
AGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGCCCTCCCC
TCTATATACTCTATAGACTACCCTCTCCCTAGCTACACTGGTCCCTTCCCTCTACAACCCCTCCC
TCACTCATAGTCCCCTTATCGCTCTCCGGTTACCACGTTTATCTCTGTCCAGATAGTGCCACCAG
TTCCCGTGCCGATACCCCCCCCGGCGAATAGGGGAGAGATAGTGCCCTTCACCCTCACCCTCTCA
TCCATCTCTATCCATCTCTATCCAGCAACCGAACCAAACACAAAGGGGGGCCACAGCGAACAGCG
GCCCAGCACGAGTAAGATATAGAGTTCCGATCCGCCCGGCCCAGCCACACTCTCTTACCGGTAAA
GGGGAGGTGGGCCAGGGCCGGAAGCCTTATATCTCTATCTGTGTG
Found at i:255781 original size:5 final size:5
Alignment explanation
Indices: 255771--255812 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
255761 ATCCGAACCG
255771 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TA
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA TAATA TA
255813 TGAGATGAGA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
TAATA
Left flanking sequence: Indices 255271 -- 255770
CTACGGTAATAACTCATTCTCCATCATCAGTCATCGGTAACTCGACTGATATGATATCAGTCATC
ATGTTACGTATATAGTATGGACTGCATCACTATAGTCGGCACCCCATATAGATAGGGGAGAGGGC
AGGGCTATATGGCGACCCCTATCTTCTTCTATCGTCTTCGAGTGTGGACTCTAGATGGCCCCATA
GATAGAAAGGGCGGGCGGGCCATATAGAGAGTTGCCCATACACGGTGATGCGGCCCATACTCCCC
TCCCCTATATAGATATTAGATATTGGCCCCCCCCCTCTCTATATATCTTCTATATAGCTGATGTC
TATAAGGGAAGGGGGCCCATCCTGTATAGAGAGTAGGGGGTCATAGAGAGATATGGCCCCCTCTA
TAGATCTTAGATTCTCTTTATAGACGTTATACCAACTAGATAGCTATATAGCTATAGCTAGATAC
CTATAGATATATAGCTAGATAGACTATAGGCTGTTATCCGAACCG
Right flanking sequence: Indices 255813 -- 256312
TGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGC
CCTCCCCTCTATATACTCTATAGACTACCCTCTCCCTAGCTACACTGGTCCCTTCCCTCTACAAC
CCCTCCCTCACTCATAGTCCCCTTATCGCTCTCCGGTTACCACGTTTATCTCTGTCCAGATAGTG
CCACCAGTTCCCGTGCCGATACCCCCCCCGGCGAATAGGGGAGAGATAGTGCCCTTCACCCTCAC
CCTCTCATCCATCTCTATCCATCTCTATCCAGCAACCGAACCAAACACAAAGGGGGGCCACAGCG
AACAGCGGCCCAGCACGAGTAAGATATAGAGTTCCGATCCGCCCGGCCCAGCCACACTCTCTTAC
CGGTAAAGGGGAGGTGGGCCAGGGCCGGAAGCCTTATATCTCTATCTGTGTGTGCGGCCGCCCAA
CCGGCCTTTCCTTTATTTTGGCTGGGCATGGCCAGCACGATAACC
Found at i:255820 original size:5 final size:5
Alignment explanation
Indices: 255812--255876 Score: 130
Period size: 5 Copynumber: 13.0 Consensus size: 5
255802 AATATAATAT
255812 ATGAG ATGAG ATGAG ATGAG ATGAG ATGAG ATGAG ATGAG ATGAG ATGAG
1 ATGAG ATGAG ATGAG ATGAG ATGAG ATGAG ATGAG ATGAG ATGAG ATGAG
255862 ATGAG ATGAG ATGAG
1 ATGAG ATGAG ATGAG
255877 CCCTCCCCTC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 60 1.00
ACGTcount: A:0.40, C:0.00, G:0.40, T:0.20
Consensus pattern (5 bp):
ATGAG
Left flanking sequence: Indices 255312 -- 255811
TCGACTGATATGATATCAGTCATCATGTTACGTATATAGTATGGACTGCATCACTATAGTCGGCA
CCCCATATAGATAGGGGAGAGGGCAGGGCTATATGGCGACCCCTATCTTCTTCTATCGTCTTCGA
GTGTGGACTCTAGATGGCCCCATAGATAGAAAGGGCGGGCGGGCCATATAGAGAGTTGCCCATAC
ACGGTGATGCGGCCCATACTCCCCTCCCCTATATAGATATTAGATATTGGCCCCCCCCCTCTCTA
TATATCTTCTATATAGCTGATGTCTATAAGGGAAGGGGGCCCATCCTGTATAGAGAGTAGGGGGT
CATAGAGAGATATGGCCCCCTCTATAGATCTTAGATTCTCTTTATAGACGTTATACCAACTAGAT
AGCTATATAGCTATAGCTAGATACCTATAGATATATAGCTAGATAGACTATAGGCTGTTATCCGA
ACCGTAATATAATATAATATAATATAATATAATATAATATAATAT
Right flanking sequence: Indices 255877 -- 256376
CCCTCCCCTCTATATACTCTATAGACTACCCTCTCCCTAGCTACACTGGTCCCTTCCCTCTACAA
CCCCTCCCTCACTCATAGTCCCCTTATCGCTCTCCGGTTACCACGTTTATCTCTGTCCAGATAGT
GCCACCAGTTCCCGTGCCGATACCCCCCCCGGCGAATAGGGGAGAGATAGTGCCCTTCACCCTCA
CCCTCTCATCCATCTCTATCCATCTCTATCCAGCAACCGAACCAAACACAAAGGGGGGCCACAGC
GAACAGCGGCCCAGCACGAGTAAGATATAGAGTTCCGATCCGCCCGGCCCAGCCACACTCTCTTA
CCGGTAAAGGGGAGGTGGGCCAGGGCCGGAAGCCTTATATCTCTATCTGTGTGTGCGGCCGCCCA
ACCGGCCTTTCCTTTATTTTGGCTGGGCATGGCCAGCACGATAACCATGTGATTACCGGCCCAGC
TACACTCATATCTATATTACCGGTGGGGCGGAGTGCCCATAGCCC
Found at i:256094 original size:10 final size:10
Alignment explanation
Indices: 256074--256103 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
256064 CACCCTCACC
256074 CTCTCATCCAT
1 CTCT-ATCCAT
256085 CTCTATCCAT
1 CTCTATCCAT
256095 CTCTATCCA
1 CTCTATCCA
256104 GCAACCGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.79
11 4 0.21
ACGTcount: A:0.20, C:0.43, G:0.00, T:0.37
Consensus pattern (10 bp):
CTCTATCCAT
Left flanking sequence: Indices 255574 -- 256073
TATCTTCTATATAGCTGATGTCTATAAGGGAAGGGGGCCCATCCTGTATAGAGAGTAGGGGGTCA
TAGAGAGATATGGCCCCCTCTATAGATCTTAGATTCTCTTTATAGACGTTATACCAACTAGATAG
CTATATAGCTATAGCTAGATACCTATAGATATATAGCTAGATAGACTATAGGCTGTTATCCGAAC
CGTAATATAATATAATATAATATAATATAATATAATATAATATATGAGATGAGATGAGATGAGAT
GAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGATGAGCCCTCCCCTCTATATACTCTAT
AGACTACCCTCTCCCTAGCTACACTGGTCCCTTCCCTCTACAACCCCTCCCTCACTCATAGTCCC
CTTATCGCTCTCCGGTTACCACGTTTATCTCTGTCCAGATAGTGCCACCAGTTCCCGTGCCGATA
CCCCCCCCGGCGAATAGGGGAGAGATAGTGCCCTTCACCCTCACC
Right flanking sequence: Indices 256104 -- 256603
GCAACCGAACCAAACACAAAGGGGGGCCACAGCGAACAGCGGCCCAGCACGAGTAAGATATAGAG
TTCCGATCCGCCCGGCCCAGCCACACTCTCTTACCGGTAAAGGGGAGGTGGGCCAGGGCCGGAAG
CCTTATATCTCTATCTGTGTGTGCGGCCGCCCAACCGGCCTTTCCTTTATTTTGGCTGGGCATGG
CCAGCACGATAACCATGTGATTACCGGCCCAGCTACACTCATATCTATATTACCGGTGGGGCGGA
GTGCCCATAGCCCTAGCACGCGGATATATAGATAGGGGCCCTAGCGGAAGATATAGAGAGAGGGC
CGGCCAATCTATAGAAAAGGCCGGGGTGCCGGATAGGATATATAGATAGGGGCCCTAGCGGAAGA
TATAGAGAGAGGGCCGGCCCAGCCCAAATAGAAGGGAAGGGAAAACGAAATGCCATATCTAGGCC
TCCCAGTCTCACTACCTTATAGATTGAAGGGGGGTCGGCGCCCCA
Found at i:259250 original size:15 final size:15
Alignment explanation
Indices: 259230--259258 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
259220 CCCTTGTGCC
259230 GATTCTACACCACCG
1 GATTCTACACCACCG
259245 GATTCTACACCACC
1 GATTCTACACCACC
259259 TACCAAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.41, G:0.10, T:0.21
Consensus pattern (15 bp):
GATTCTACACCACCG
Left flanking sequence: Indices 258730 -- 259229
GGCTTATCCATTTCCCAACGGGTGAATGGATCGGCACAGTGCTCCCGCTATAGATATATGACGAA
TGATGCGATGGAATACCTCCAACCAGAGGTGCCAATGGAATGAAGAATGCGACGCGGGCGCGGGT
AGCAAGGCGTTGGCCGTTTCGGGTGACCGGAGCAAAACCGCTCTATCTATATAGTCAGTGATCGA
GGTCCAATGGCCTAGAGTTTAGTAGTTGGCACGGAATGCTCTATCCCTATATATAGAGATGGGAG
ATGGCACGAGGCACTCACCAGAGCATGACGCCAGCCAGATGATAGCGCAACTGCCAGATCCTACG
AACCGGATGAACGAGCAGATCTTCGAACTGCAGCAGCGATAAAGCATCCATTCAGTAACAGATCC
CTATTCCTGTACCTTTCTGAATCGAGACCCGGTCTATATAGAAATTCTATTGGATCACCATGGGG
ACCAGGTTGCCAGTTCCGTCCGACAAACTACCGTTCCCTTGTGCC
Right flanking sequence: Indices 259259 -- 259758
TACCAAGAAATAAATCTTCTTCACATAGCTCTCATTTAAGATTCGTCGTTATCTACTCATCACCC
TTTCTCATGCCCATAGATCTAGAGGGGCCCCGGAACGCCGCCATATTACCAAGGAACTGGATAGA
TTACTATCACTCTTCCATTGTCTTCGCGTTGTCGTTGTCCGTGAAGATAGAGAATCAATCCAATC
CAATCTATATAGGGCAGGGCAGGGAGGAGAATCTGGGCCCATATCTATATATCATGCTGCTGTTC
ATTGTTCTGATGCTAGCAAGAACAACGCTCTCAACCGCATACACGAAGCCTTCCCCGAGTTCGGA
GAAAGCGAATGCCGTGTAACTTTCCGCAAGTCATGGCTCCCCGCCGTCGAATATGTGCGAAGAGA
GGGGGCGATTCTCATCCTTTGCTCTATGACTCGATAGAGGGAAGACCTATCGGGAGAGAGAGAGG
GGAGAATCGAAGGAGAGGGAGAGGGGAGAATCGAAGGAGAGGGAG
Found at i:259735 original size:24 final size:24
Alignment explanation
Indices: 259701--259810 Score: 193
Period size: 24 Copynumber: 4.6 Consensus size: 24
259691 AGACCTATCG
*
259701 GGAGAGAGAGAGGGGAGAATCGAA
1 GGAGAGGGAGAGGGGAGAATCGAA
259725 GGAGAGGGAGAGGGGAGAATCGAA
1 GGAGAGGGAGAGGGGAGAATCGAA
259749 GGAGAGGGAGAGGGGAGAATCGAA
1 GGAGAGGGAGAGGGGAGAATCGAA
* *
259773 GGAGAGGGAGAGGGTAAAATCGAA
1 GGAGAGGGAGAGGGGAGAATCGAA
259797 GGAGAGGGAGAGGG
1 GGAGAGGGAGAGGG
259811 AGAGGAAGAG
Statistics
Matches: 83, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 83 1.00
ACGTcount: A:0.38, C:0.04, G:0.54, T:0.05
Consensus pattern (24 bp):
GGAGAGGGAGAGGGGAGAATCGAA
Left flanking sequence: Indices 259201 -- 259700
CGTCCGACAAACTACCGTTCCCTTGTGCCGATTCTACACCACCGGATTCTACACCACCTACCAAG
AAATAAATCTTCTTCACATAGCTCTCATTTAAGATTCGTCGTTATCTACTCATCACCCTTTCTCA
TGCCCATAGATCTAGAGGGGCCCCGGAACGCCGCCATATTACCAAGGAACTGGATAGATTACTAT
CACTCTTCCATTGTCTTCGCGTTGTCGTTGTCCGTGAAGATAGAGAATCAATCCAATCCAATCTA
TATAGGGCAGGGCAGGGAGGAGAATCTGGGCCCATATCTATATATCATGCTGCTGTTCATTGTTC
TGATGCTAGCAAGAACAACGCTCTCAACCGCATACACGAAGCCTTCCCCGAGTTCGGAGAAAGCG
AATGCCGTGTAACTTTCCGCAAGTCATGGCTCCCCGCCGTCGAATATGTGCGAAGAGAGGGGGCG
ATTCTCATCCTTTGCTCTATGACTCGATAGAGGGAAGACCTATCG
Right flanking sequence: Indices 259811 -- 260310
AGAGGAAGAGGGGAGAATCGAAGGAGAGGGAGAGGAAGAGGAAGAGGGGAGAATCAAACTCATTC
GCGAATTGCGCTCCAAACCTTGTTGGCATCATGTTCTTAAAGACCCGCCTATCTATGAGGAGATT
GTACCGATTACGGATCTCAACTCAATATAGAGCCGAGATATATAGAGAGGGGGGGGCCCCCAGAG
AAAGAGAACCCATATAGAGAGAAGGGGGGGCTCCCCTCTATTCTATGGAGGGGGGGCCCCCCCTC
TCTCCCCCATCTATCTATCTATCTATCTATCTATAGAGGCGGGCCCCCCCATCCCATCCATATAG
AGATGAGATAGGGCCCGGGCCGTCGAACTAAAAGAGATAGGTGGGACTTCTGGACATGGGCATGG
ACAGGGGTGGGTGCGCCCAATACTCGATATCGATATCTATGGGGTGGCGGTGGCTGCATCCATTC
GGCCCTATCTCTCTATGGATGCTTCGGTGGGGCCCTATCTCTATA
Found at i:259813 original size:36 final size:36
Alignment explanation
Indices: 259773--259865 Score: 141
Period size: 36 Copynumber: 2.6 Consensus size: 36
259763 GAGAATCGAA
* *
259773 GGAGAGGGAGAGGGTAAAATCGAAGGAGAGGGAGAG
1 GGAGAGGAAGAGGGGAAAATCGAAGGAGAGGGAGAG
*
259809 GGAGAGGAAGAGGGGAGAATCGAAGGAGAGGGAGAG
1 GGAGAGGAAGAGGGGAAAATCGAAGGAGAGGGAGAG
* *
259845 GAAGAGGAAGAGGGGAGAATC
1 GGAGAGGAAGAGGGGAAAATC
259866 AAACTCATTC
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
36 53 1.00
ACGTcount: A:0.40, C:0.03, G:0.53, T:0.04
Consensus pattern (36 bp):
GGAGAGGAAGAGGGGAAAATCGAAGGAGAGGGAGAG
Left flanking sequence: Indices 259273 -- 259772
TCTTCTTCACATAGCTCTCATTTAAGATTCGTCGTTATCTACTCATCACCCTTTCTCATGCCCAT
AGATCTAGAGGGGCCCCGGAACGCCGCCATATTACCAAGGAACTGGATAGATTACTATCACTCTT
CCATTGTCTTCGCGTTGTCGTTGTCCGTGAAGATAGAGAATCAATCCAATCCAATCTATATAGGG
CAGGGCAGGGAGGAGAATCTGGGCCCATATCTATATATCATGCTGCTGTTCATTGTTCTGATGCT
AGCAAGAACAACGCTCTCAACCGCATACACGAAGCCTTCCCCGAGTTCGGAGAAAGCGAATGCCG
TGTAACTTTCCGCAAGTCATGGCTCCCCGCCGTCGAATATGTGCGAAGAGAGGGGGCGATTCTCA
TCCTTTGCTCTATGACTCGATAGAGGGAAGACCTATCGGGAGAGAGAGAGGGGAGAATCGAAGGA
GAGGGAGAGGGGAGAATCGAAGGAGAGGGAGAGGGGAGAATCGAA
Right flanking sequence: Indices 259866 -- 260365
AAACTCATTCGCGAATTGCGCTCCAAACCTTGTTGGCATCATGTTCTTAAAGACCCGCCTATCTA
TGAGGAGATTGTACCGATTACGGATCTCAACTCAATATAGAGCCGAGATATATAGAGAGGGGGGG
GCCCCCAGAGAAAGAGAACCCATATAGAGAGAAGGGGGGGCTCCCCTCTATTCTATGGAGGGGGG
GCCCCCCCTCTCTCCCCCATCTATCTATCTATCTATCTATCTATAGAGGCGGGCCCCCCCATCCC
ATCCATATAGAGATGAGATAGGGCCCGGGCCGTCGAACTAAAAGAGATAGGTGGGACTTCTGGAC
ATGGGCATGGACAGGGGTGGGTGCGCCCAATACTCGATATCGATATCTATGGGGTGGCGGTGGCT
GCATCCATTCGGCCCTATCTCTCTATGGATGCTTCGGTGGGGCCCTATCTCTATATCTCTATATG
GGGGGAGACGAGCTGACTAGAGTAGAGGTGTATTGTTCCCCGGCT
Found at i:259845 original size:30 final size:30
Alignment explanation
Indices: 259700--259851 Score: 118
Period size: 24 Copynumber: 5.5 Consensus size: 30
259690 AAGACCTATC
259700 GGGAGA-GAGAGAGGGGAGAATCGAA-G-GA
1 GGGAGAGGA-AGAGGGGAGAATCGAAGGAGA
259728 --GAG-GG-AGAGGGGAGAATCGAA-G-GA
1 GGGAGAGGAAGAGGGGAGAATCGAAGGAGA
259752 --GAG-GG-AGAGGGGAGAATCGAAGGAGA
1 GGGAGAGGAAGAGGGGAGAATCGAAGGAGA
* ** * * *
259778 GGGAGAGGGTAAAATCGAAGGA--GAGGGAGA
1 GGGAGA-GG-AAGAGGGGAGAATCGAAGGAGA
259808 GGGAGAGGAAGAGGGGAGAATCGAAGGAGA
1 GGGAGAGGAAGAGGGGAGAATCGAAGGAGA
259838 GGGAGAGGAAGAGG
1 GGGAGAGGAAGAGG
259852 AAGAGGGGAG
Statistics
Matches: 101, Mismatches: 12, Indels: 20
0.76 0.09 0.15
Matches are distributed among these distances:
24 40 0.40
25 1 0.01
26 6 0.06
28 10 0.10
29 2 0.02
30 36 0.36
32 6 0.06
ACGTcount: A:0.39, C:0.03, G:0.54, T:0.04
Consensus pattern (30 bp):
GGGAGAGGAAGAGGGGAGAATCGAAGGAGA
Left flanking sequence: Indices 259200 -- 259699
CCGTCCGACAAACTACCGTTCCCTTGTGCCGATTCTACACCACCGGATTCTACACCACCTACCAA
GAAATAAATCTTCTTCACATAGCTCTCATTTAAGATTCGTCGTTATCTACTCATCACCCTTTCTC
ATGCCCATAGATCTAGAGGGGCCCCGGAACGCCGCCATATTACCAAGGAACTGGATAGATTACTA
TCACTCTTCCATTGTCTTCGCGTTGTCGTTGTCCGTGAAGATAGAGAATCAATCCAATCCAATCT
ATATAGGGCAGGGCAGGGAGGAGAATCTGGGCCCATATCTATATATCATGCTGCTGTTCATTGTT
CTGATGCTAGCAAGAACAACGCTCTCAACCGCATACACGAAGCCTTCCCCGAGTTCGGAGAAAGC
GAATGCCGTGTAACTTTCCGCAAGTCATGGCTCCCCGCCGTCGAATATGTGCGAAGAGAGGGGGC
GATTCTCATCCTTTGCTCTATGACTCGATAGAGGGAAGACCTATC
Right flanking sequence: Indices 259852 -- 260351
AAGAGGGGAGAATCAAACTCATTCGCGAATTGCGCTCCAAACCTTGTTGGCATCATGTTCTTAAA
GACCCGCCTATCTATGAGGAGATTGTACCGATTACGGATCTCAACTCAATATAGAGCCGAGATAT
ATAGAGAGGGGGGGGCCCCCAGAGAAAGAGAACCCATATAGAGAGAAGGGGGGGCTCCCCTCTAT
TCTATGGAGGGGGGGCCCCCCCTCTCTCCCCCATCTATCTATCTATCTATCTATCTATAGAGGCG
GGCCCCCCCATCCCATCCATATAGAGATGAGATAGGGCCCGGGCCGTCGAACTAAAAGAGATAGG
TGGGACTTCTGGACATGGGCATGGACAGGGGTGGGTGCGCCCAATACTCGATATCGATATCTATG
GGGTGGCGGTGGCTGCATCCATTCGGCCCTATCTCTCTATGGATGCTTCGGTGGGGCCCTATCTC
TATATCTCTATATGGGGGGAGACGAGCTGACTAGAGTAGAGGTGT
Found at i:260088 original size:4 final size:4
Alignment explanation
Indices: 260079--260104 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
260069 TCTCTCCCCC
260079 ATCT ATCT ATCT ATCT ATCT ATCT AT
1 ATCT ATCT ATCT ATCT ATCT ATCT AT
260105 AGAGGCGGGC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (4 bp):
ATCT
Left flanking sequence: Indices 259579 -- 260078
TCGGAGAAAGCGAATGCCGTGTAACTTTCCGCAAGTCATGGCTCCCCGCCGTCGAATATGTGCGA
AGAGAGGGGGCGATTCTCATCCTTTGCTCTATGACTCGATAGAGGGAAGACCTATCGGGAGAGAG
AGAGGGGAGAATCGAAGGAGAGGGAGAGGGGAGAATCGAAGGAGAGGGAGAGGGGAGAATCGAAG
GAGAGGGAGAGGGTAAAATCGAAGGAGAGGGAGAGGGAGAGGAAGAGGGGAGAATCGAAGGAGAG
GGAGAGGAAGAGGAAGAGGGGAGAATCAAACTCATTCGCGAATTGCGCTCCAAACCTTGTTGGCA
TCATGTTCTTAAAGACCCGCCTATCTATGAGGAGATTGTACCGATTACGGATCTCAACTCAATAT
AGAGCCGAGATATATAGAGAGGGGGGGGCCCCCAGAGAAAGAGAACCCATATAGAGAGAAGGGGG
GGCTCCCCTCTATTCTATGGAGGGGGGGCCCCCCCTCTCTCCCCC
Right flanking sequence: Indices 260105 -- 260604
AGAGGCGGGCCCCCCCATCCCATCCATATAGAGATGAGATAGGGCCCGGGCCGTCGAACTAAAAG
AGATAGGTGGGACTTCTGGACATGGGCATGGACAGGGGTGGGTGCGCCCAATACTCGATATCGAT
ATCTATGGGGTGGCGGTGGCTGCATCCATTCGGCCCTATCTCTCTATGGATGCTTCGGTGGGGCC
CTATCTCTATATCTCTATATGGGGGGAGACGAGCTGACTAGAGTAGAGGTGTATTGTTCCCCGGC
TATGGATAGAGAGGGTGGGGCTTCCTATCTCTACTCTATATGGATACGGCTCTGGAGAGAGAGAG
GGTCGGCATCATCTGATCGAGACCCCGGCTCTCCCCACGAGTCTATATTCTATAGATAGGGCCGG
CTATCTGAGTTACTTTAGATAGGCCCCGTTCTGGAGTGGGAGTGGGAGATGGGAAAGATCAGGCA
TCAGGCGGGCGGCTGGATGGGTGACTGGTGAATAAGATCCGCTTC
Found at i:262405 original size:18 final size:18
Alignment explanation
Indices: 262378--262522 Score: 81
Period size: 18 Copynumber: 8.4 Consensus size: 18
262368 TCAGTCTCTC
*
262378 TCTCTATCTCTATATAGA
1 TCTCTCTCTCTATATAGA
*
262396 TCTCTCTCTCTATCT-G-
1 TCTCTCTCTCTATATAGA
* * *
262412 TATCTCTCTC-AGATATA
1 TCTCTCTCTCTATATAGA
* *
262429 TATCTCTCTCTATAT--C
1 TCTCTCTCTCTATATAGA
* *
262445 TCTATCTCTCTCTATAGA
1 TCTCTCTCTCTATATAGA
* *
262463 --TATATCTCTATATAGA
1 TCTCTCTCTCTATATAGA
*
262479 TCTCTCTCTCTATCT-GTA
1 TCTCTCTCTCTATATAG-A
** * *
262497 TCTCTCGATCTATCTATA
1 TCTCTCTCTCTATATAGA
262515 TCTCTCTC
1 TCTCTCTC
262523 GACTCTATCT
Statistics
Matches: 96, Mismatches: 22, Indels: 18
0.71 0.16 0.13
Matches are distributed among these distances:
15 2 0.02
16 35 0.36
17 12 0.12
18 47 0.49
ACGTcount: A:0.21, C:0.28, G:0.05, T:0.46
Consensus pattern (18 bp):
TCTCTCTCTCTATATAGA
Left flanking sequence: Indices 261878 -- 262377
TTCTCTATAGATGGGAGCCGAGATATAGAGGGGACCTCCCTCTCCTTTAAAGCGGGTCCCTCTCC
GACCAATAAAAGGAGCGACCAATAAAAGGCTCCCCGACTCCCCGTTAATCTAACTGAAGCCGATC
GGAAGACATGCATGCCCTCTATATTGATCTGGCAAACATATATGGCATTGATATATATTCTAGAG
GGGGCCCTCTATATTGATCTGGCAAACAGATATGGAAAGATAGGGGCGGGCGGGGCAAGGTTGGT
TAAGAGCCCACCCGACCTCCCCCCTCCCCCTAATGTGGGGCCCCCCCGACCCGGCTTCCCCGCTA
TGGCCCATATAGAGAGAGGGGGGACCTCCGAGCCAGATCTATAGATAGATAGATAGATAGAGATC
TGTATTCTATATGCCCTCTATATTGTATTGATCTGGCCTCCACTCTATCTATACCTATATCCATA
TCCATATCCATATCTCACTCTTCACTCTTCACTCTTCAGTCTCTC
Right flanking sequence: Indices 262523 -- 263022
GACTCTATCTGAATGAGACTCTATGGGAAGGCTAGTCGAAAGCCCATATATTCTTAGGGCTAGTC
GGCGTGGCCCCTATCCCTATATATAGGATATGGGCACTCCGTCCAGAATCTATACTTTCATCAGT
CAGTCCGGTTCAGTCTGGGCTATCCCCCTCTCTAAATCTCTAGTTCGGGGTGGGGGCCCCCTCTC
TTCTATCAATCCAGTTGGCATCCGTCTCTAGTCGAGGGCCCCCTCTCTTCTATCAATCCAGTTGG
CATCACATATATAGAGAGATAGGGCGTCGGGAGTCAAGGAAGCTCCCACTCTTTTGTTTAGTCTG
GGCCATATAGATATGGGGGCTCCCTCCCCCTCTCTCTATATGGATCTGGGCCAGTTGGCATCACT
CCCCAGTCGATCCTACTCTTTTGTTCAGTCTTTAGTCGAGGATGCCCCAGGTAGATTCGCGTATT
CTATATCTCTCTCTATATCTCTATCTTACGAACTGAGCGAAGGCG
Found at i:262417 original size:16 final size:16
Alignment explanation
Indices: 262398--262522 Score: 83
Period size: 16 Copynumber: 7.5 Consensus size: 16
262388 TATATAGATC
262398 TCTCTCTCTATCTGTA
1 TCTCTCTCTATCTGTA
* * *
262414 TCTCTCTCAGATATATA
1 TCTCTCTC-TATCTGTA
*
262431 TCTCTCTCTATATCTCTA
1 TCTCTCTC--TATCTGTA
*
262449 TCTCTCTCTAT-AGATA
1 TCTCTCTCTATCTG-TA
* * * *
262465 TATCTCTATAT-AGATC
1 TCTCTCTCTATCTG-TA
262481 TCTCTCTCTATCTGTA
1 TCTCTCTCTATCTGTA
*
262497 TCTCTCGATCTATCTATA
1 TCTCTC--TCTATCTGTA
262515 TCTCTCTC
1 TCTCTCTC
262523 GACTCTATCT
Statistics
Matches: 87, Mismatches: 16, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
16 44 0.51
17 14 0.16
18 29 0.33
ACGTcount: A:0.20, C:0.29, G:0.05, T:0.46
Consensus pattern (16 bp):
TCTCTCTCTATCTGTA
Left flanking sequence: Indices 261898 -- 262397
AGATATAGAGGGGACCTCCCTCTCCTTTAAAGCGGGTCCCTCTCCGACCAATAAAAGGAGCGACC
AATAAAAGGCTCCCCGACTCCCCGTTAATCTAACTGAAGCCGATCGGAAGACATGCATGCCCTCT
ATATTGATCTGGCAAACATATATGGCATTGATATATATTCTAGAGGGGGCCCTCTATATTGATCT
GGCAAACAGATATGGAAAGATAGGGGCGGGCGGGGCAAGGTTGGTTAAGAGCCCACCCGACCTCC
CCCCTCCCCCTAATGTGGGGCCCCCCCGACCCGGCTTCCCCGCTATGGCCCATATAGAGAGAGGG
GGGACCTCCGAGCCAGATCTATAGATAGATAGATAGATAGAGATCTGTATTCTATATGCCCTCTA
TATTGTATTGATCTGGCCTCCACTCTATCTATACCTATATCCATATCCATATCCATATCTCACTC
TTCACTCTTCACTCTTCAGTCTCTCTCTCTATCTCTATATAGATC
Right flanking sequence: Indices 262523 -- 263022
GACTCTATCTGAATGAGACTCTATGGGAAGGCTAGTCGAAAGCCCATATATTCTTAGGGCTAGTC
GGCGTGGCCCCTATCCCTATATATAGGATATGGGCACTCCGTCCAGAATCTATACTTTCATCAGT
CAGTCCGGTTCAGTCTGGGCTATCCCCCTCTCTAAATCTCTAGTTCGGGGTGGGGGCCCCCTCTC
TTCTATCAATCCAGTTGGCATCCGTCTCTAGTCGAGGGCCCCCTCTCTTCTATCAATCCAGTTGG
CATCACATATATAGAGAGATAGGGCGTCGGGAGTCAAGGAAGCTCCCACTCTTTTGTTTAGTCTG
GGCCATATAGATATGGGGGCTCCCTCCCCCTCTCTCTATATGGATCTGGGCCAGTTGGCATCACT
CCCCAGTCGATCCTACTCTTTTGTTCAGTCTTTAGTCGAGGATGCCCCAGGTAGATTCGCGTATT
CTATATCTCTCTCTATATCTCTATCTTACGAACTGAGCGAAGGCG
Found at i:262434 original size:35 final size:36
Alignment explanation
Indices: 262389--262489 Score: 114
Period size: 35 Copynumber: 2.8 Consensus size: 36
262379 CTCTATCTCT
* * *
262389 ATATAGATCTCTCTCTCTATCTGTATCTCTCTC-AG
1 ATATATATCTCTCTCTATATCTCTATCTCTCTCTAG
*
262424 ATATATATCTCTCTCTATATCTCTATCTCTCTCTAT
1 ATATATATCTCTCTCTATATCTCTATCTCTCTCTAG
* * * * *
262460 AGATATATCTCTATATAGATCTCTCTCTCT
1 ATATATATCTCTCTCTATATCTCTATCTCT
262490 ATCTGTATCT
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
35 30 0.54
36 26 0.46
ACGTcount: A:0.23, C:0.27, G:0.05, T:0.46
Consensus pattern (36 bp):
ATATATATCTCTCTCTATATCTCTATCTCTCTCTAG
Left flanking sequence: Indices 261889 -- 262388
TGGGAGCCGAGATATAGAGGGGACCTCCCTCTCCTTTAAAGCGGGTCCCTCTCCGACCAATAAAA
GGAGCGACCAATAAAAGGCTCCCCGACTCCCCGTTAATCTAACTGAAGCCGATCGGAAGACATGC
ATGCCCTCTATATTGATCTGGCAAACATATATGGCATTGATATATATTCTAGAGGGGGCCCTCTA
TATTGATCTGGCAAACAGATATGGAAAGATAGGGGCGGGCGGGGCAAGGTTGGTTAAGAGCCCAC
CCGACCTCCCCCCTCCCCCTAATGTGGGGCCCCCCCGACCCGGCTTCCCCGCTATGGCCCATATA
GAGAGAGGGGGGACCTCCGAGCCAGATCTATAGATAGATAGATAGATAGAGATCTGTATTCTATA
TGCCCTCTATATTGTATTGATCTGGCCTCCACTCTATCTATACCTATATCCATATCCATATCCAT
ATCTCACTCTTCACTCTTCACTCTTCAGTCTCTCTCTCTATCTCT
Right flanking sequence: Indices 262490 -- 262989
ATCTGTATCTCTCGATCTATCTATATCTCTCTCGACTCTATCTGAATGAGACTCTATGGGAAGGC
TAGTCGAAAGCCCATATATTCTTAGGGCTAGTCGGCGTGGCCCCTATCCCTATATATAGGATATG
GGCACTCCGTCCAGAATCTATACTTTCATCAGTCAGTCCGGTTCAGTCTGGGCTATCCCCCTCTC
TAAATCTCTAGTTCGGGGTGGGGGCCCCCTCTCTTCTATCAATCCAGTTGGCATCCGTCTCTAGT
CGAGGGCCCCCTCTCTTCTATCAATCCAGTTGGCATCACATATATAGAGAGATAGGGCGTCGGGA
GTCAAGGAAGCTCCCACTCTTTTGTTTAGTCTGGGCCATATAGATATGGGGGCTCCCTCCCCCTC
TCTCTATATGGATCTGGGCCAGTTGGCATCACTCCCCAGTCGATCCTACTCTTTTGTTCAGTCTT
TAGTCGAGGATGCCCCAGGTAGATTCGCGTATTCTATATCTCTCT
Found at i:262515 original size:48 final size:47
Alignment explanation
Indices: 262424--262519 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 47
262414 TCTCTCTCAG
*
262424 ATATATATCTCTCTCTATATCTCTATCTCTCTCTATAGATATATCTCT
1 ATATAGATCTCTCTCTATATCTCTATCTCTCTCTATA-ATATATCTCT
* * *
262472 ATATAGATCTCTCTCTCTATCTGTATCTCTCGATCTAT-CTATATCTCT
1 ATATAGATCTCTCTCTATATCTCTATCTCTC--TCTATAATATATCTCT
262520 CTCGACTCTA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
48 37 0.88
50 5 0.12
ACGTcount: A:0.23, C:0.26, G:0.04, T:0.47
Consensus pattern (47 bp):
ATATAGATCTCTCTCTATATCTCTATCTCTCTCTATAATATATCTCT
Left flanking sequence: Indices 261924 -- 262423
TTAAAGCGGGTCCCTCTCCGACCAATAAAAGGAGCGACCAATAAAAGGCTCCCCGACTCCCCGTT
AATCTAACTGAAGCCGATCGGAAGACATGCATGCCCTCTATATTGATCTGGCAAACATATATGGC
ATTGATATATATTCTAGAGGGGGCCCTCTATATTGATCTGGCAAACAGATATGGAAAGATAGGGG
CGGGCGGGGCAAGGTTGGTTAAGAGCCCACCCGACCTCCCCCCTCCCCCTAATGTGGGGCCCCCC
CGACCCGGCTTCCCCGCTATGGCCCATATAGAGAGAGGGGGGACCTCCGAGCCAGATCTATAGAT
AGATAGATAGATAGAGATCTGTATTCTATATGCCCTCTATATTGTATTGATCTGGCCTCCACTCT
ATCTATACCTATATCCATATCCATATCCATATCTCACTCTTCACTCTTCACTCTTCAGTCTCTCT
CTCTATCTCTATATAGATCTCTCTCTCTATCTGTATCTCTCTCAG
Right flanking sequence: Indices 262520 -- 263019
CTCGACTCTATCTGAATGAGACTCTATGGGAAGGCTAGTCGAAAGCCCATATATTCTTAGGGCTA
GTCGGCGTGGCCCCTATCCCTATATATAGGATATGGGCACTCCGTCCAGAATCTATACTTTCATC
AGTCAGTCCGGTTCAGTCTGGGCTATCCCCCTCTCTAAATCTCTAGTTCGGGGTGGGGGCCCCCT
CTCTTCTATCAATCCAGTTGGCATCCGTCTCTAGTCGAGGGCCCCCTCTCTTCTATCAATCCAGT
TGGCATCACATATATAGAGAGATAGGGCGTCGGGAGTCAAGGAAGCTCCCACTCTTTTGTTTAGT
CTGGGCCATATAGATATGGGGGCTCCCTCCCCCTCTCTCTATATGGATCTGGGCCAGTTGGCATC
ACTCCCCAGTCGATCCTACTCTTTTGTTCAGTCTTTAGTCGAGGATGCCCCAGGTAGATTCGCGT
ATTCTATATCTCTCTCTATATCTCTATCTTACGAACTGAGCGAAG
Found at i:264120 original size:38 final size:38
Alignment explanation
Indices: 264078--264163 Score: 145
Period size: 38 Copynumber: 2.3 Consensus size: 38
264068 CTATCCCTCT
* *
264078 CATCTTTCTTTCTAGATGATACGACTGATGACTGGTCC
1 CATCTATCCTTCTAGATGATACGACTGATGACTGGTCC
*
264116 CATCTATCCTTCTAGATGATACGACTGATGACTGGTCT
1 CATCTATCCTTCTAGATGATACGACTGATGACTGGTCC
264154 CATCTATCCT
1 CATCTATCCT
264164 CCTATTCTAT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 45 1.00
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (38 bp):
CATCTATCCTTCTAGATGATACGACTGATGACTGGTCC
Left flanking sequence: Indices 263578 -- 264077
CCGCCCACCCCACCTATTGTAGGCGTAGGCAGAAGTACTATATAGTACAGGTGGCCATATATAGA
TTCTTATCTACATTGGGGCCTAGACTAGCCTCCTATCTTGGCGACCTCGATCGACGGCCCGGGGG
GCTGGCGCCCTATCTATAGACCCTATCTAGATCTATGCTGGTCGAGCGACCTCGATCGCCGGCCC
CACCCCGGATATAGATAGGGGGCCCCCAGATATAGATAGATGGGAGTCCCTCCTCTCCCGCTGCC
ATATAGAGATATAGGGACCCCCGAATCGGGCGGGGGACAGATCTCTCTAGATGGGGCCCCCCTCC
CTATAGAGATATGGGAGAGAGGGGGGGGCGGCTATAGAGAGGGGCCCATACCATATAGATAGAGG
GGAGAGTGCCCCCACCCCTTCCTATCTTATCTTAGAGTTCTAGATAGGCCCCCGGGACCACGGAG
AACGTGTAGATGATACGACTGATGACTGGTCTCATCTATCCCTCT
Right flanking sequence: Indices 264164 -- 264663
CCTATTCTATCCAAAGGAGTGATACAACCAGTCATATCATATCTATATAGAGGGGGGCCTATCTA
GAACTCTAAGATAAGATAGGAAGGGGTGGGGGTGGGGGTGTGAGGGTGGCAGGGGCCGCCATCGA
TGCGCTTGTTTGCGAGGGATCGATCCGATATGTTATATTGCTATTGCTGTGAGTATGGTGATACG
ATAGGTGAGTATGGTGATACGATAGGAATAAAGATCGGTCCATCCAGAATCAATCTCGTCATGGC
GTGCTGGGCTTGACGAATGCGGTCCCCCCCATAGAATATATATATAAGGCACCCTACCCCTCCCC
TAATATAGATTCGTCTTGCTAAACCTGTGGGAAACGTATCCCTGTGGGAAACTGGTTGGTGGCCC
CTATACATCTCGTTCCTGCGGTGGTAAACGACTGTACTGTCATGCTACTTGTCAATGTCTCGGGA
GGAGTCAGATTCCCGCCTGCTGTCCGTCCGCCTGCCGTTTTCTCC
Found at i:264368 original size:21 final size:21
Alignment explanation
Indices: 264342--264384 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
264332 TGCTATTGCT
264342 GTGAGTATGGTGATACGATAG
1 GTGAGTATGGTGATACGATAG
264363 GTGAGTATGGTGATACGATAG
1 GTGAGTATGGTGATACGATAG
264384 G
1 G
264385 AATAAAGATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.05, G:0.40, T:0.28
Consensus pattern (21 bp):
GTGAGTATGGTGATACGATAG
Left flanking sequence: Indices 263842 -- 264341
AGAGATATAGGGACCCCCGAATCGGGCGGGGGACAGATCTCTCTAGATGGGGCCCCCCTCCCTAT
AGAGATATGGGAGAGAGGGGGGGGCGGCTATAGAGAGGGGCCCATACCATATAGATAGAGGGGAG
AGTGCCCCCACCCCTTCCTATCTTATCTTAGAGTTCTAGATAGGCCCCCGGGACCACGGAGAACG
TGTAGATGATACGACTGATGACTGGTCTCATCTATCCCTCTCATCTTTCTTTCTAGATGATACGA
CTGATGACTGGTCCCATCTATCCTTCTAGATGATACGACTGATGACTGGTCTCATCTATCCTCCT
ATTCTATCCAAAGGAGTGATACAACCAGTCATATCATATCTATATAGAGGGGGGCCTATCTAGAA
CTCTAAGATAAGATAGGAAGGGGTGGGGGTGGGGGTGTGAGGGTGGCAGGGGCCGCCATCGATGC
GCTTGTTTGCGAGGGATCGATCCGATATGTTATATTGCTATTGCT
Right flanking sequence: Indices 264385 -- 264884
AATAAAGATCGGTCCATCCAGAATCAATCTCGTCATGGCGTGCTGGGCTTGACGAATGCGGTCCC
CCCCATAGAATATATATATAAGGCACCCTACCCCTCCCCTAATATAGATTCGTCTTGCTAAACCT
GTGGGAAACGTATCCCTGTGGGAAACTGGTTGGTGGCCCCTATACATCTCGTTCCTGCGGTGGTA
AACGACTGTACTGTCATGCTACTTGTCAATGTCTCGGGAGGAGTCAGATTCCCGCCTGCTGTCCG
TCCGCCTGCCGTTTTCTCCTCTAAGACACCTACCGGCCAGATGGCTGTACTGGGGCAACTCCTTT
CCCATAATATAGAGAGAGGGGCTCAGATGGATCAGTGGTTTCCTATAATATAGAGAGAGGGGCTC
AGATGGATCCGATCCATTACTCAGATGGATCAGTGGTTTCCTATAATATAGAGAGAGGGGCTCAG
ATGGATCCGATCCATTACTCAGATGGATCAGTGGTTTCCTATAAT
Found at i:264830 original size:63 final size:63
Alignment explanation
Indices: 264731--264909 Score: 358
Period size: 63 Copynumber: 2.8 Consensus size: 63
264721 GAGAGAGGGG
264731 CTCAGATGGATCAGTGGTTTCCTATAATATAGAGAGAGGGGCTCAGATGGATCCGATCCATTA
1 CTCAGATGGATCAGTGGTTTCCTATAATATAGAGAGAGGGGCTCAGATGGATCCGATCCATTA
264794 CTCAGATGGATCAGTGGTTTCCTATAATATAGAGAGAGGGGCTCAGATGGATCCGATCCATTA
1 CTCAGATGGATCAGTGGTTTCCTATAATATAGAGAGAGGGGCTCAGATGGATCCGATCCATTA
264857 CTCAGATGGATCAGTGGTTTCCTATAATATAGAGAGAGGGGCTCAGATGGATC
1 CTCAGATGGATCAGTGGTTTCCTATAATATAGAGAGAGGGGCTCAGATGGATC
264910 AGTGGGATGG
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 116 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (63 bp):
CTCAGATGGATCAGTGGTTTCCTATAATATAGAGAGAGGGGCTCAGATGGATCCGATCCATTA
Left flanking sequence: Indices 264231 -- 264730
ACTCTAAGATAAGATAGGAAGGGGTGGGGGTGGGGGTGTGAGGGTGGCAGGGGCCGCCATCGATG
CGCTTGTTTGCGAGGGATCGATCCGATATGTTATATTGCTATTGCTGTGAGTATGGTGATACGAT
AGGTGAGTATGGTGATACGATAGGAATAAAGATCGGTCCATCCAGAATCAATCTCGTCATGGCGT
GCTGGGCTTGACGAATGCGGTCCCCCCCATAGAATATATATATAAGGCACCCTACCCCTCCCCTA
ATATAGATTCGTCTTGCTAAACCTGTGGGAAACGTATCCCTGTGGGAAACTGGTTGGTGGCCCCT
ATACATCTCGTTCCTGCGGTGGTAAACGACTGTACTGTCATGCTACTTGTCAATGTCTCGGGAGG
AGTCAGATTCCCGCCTGCTGTCCGTCCGCCTGCCGTTTTCTCCTCTAAGACACCTACCGGCCAGA
TGGCTGTACTGGGGCAACTCCTTTCCCATAATATAGAGAGAGGGG
Right flanking sequence: Indices 264910 -- 265409
AGTGGGATGGTCGACATCCATTTAGTGAGCAGCTTCACTCCCGGCCCGGCATTTAGTGAGCGTGA
GCAGCGGGCGAACCGAAAAGGGGATGATCCGGATTCGAAAGCAGGGAACGGCAGACCTATTGATT
GCAAAGGTTGGGGGGGTCGAATTGATCGTGTCATTCTGACAAGTGTGCAACGTCCATCATGGTCC
ATCCATGTTGGTCTAGACTCCTTCTCCGTCACCACGAATGGGATGGTCAGACAAATATATGGTAA
GGGGCACGTAGGGTCATTTATGCTCGTCAGGTCGACGTCCGCCCCCGTTCAGGGCTCCTCCCCCA
GCTAAGCTATCTAGAGTCTATAGGAGGCTATAGAGTCTCTAGGGGGCTATAGAGTCTATAGTAGA
TAGTCTATAGGAGGCTATGGAGTATATAGTCTATAGGAGGCTAGATAGTAGGCCGTCGGGAGATA
GATAGATAGGGGGGCGGCTATATCTAGTTGGCACCCCCCCCCCTA
Found at i:265270 original size:19 final size:19
Alignment explanation
Indices: 265246--265328 Score: 86
Period size: 19 Copynumber: 4.6 Consensus size: 19
265236 CTAAGCTATC
265246 TAGAGTCTATAGGAGGCTA
1 TAGAGTCTATAGGAGGCTA
* *
265265 TAGAGTCTCTAGGGGGCTA
1 TAGAGTCTATAGGAGGCTA
*
265284 TAGAGTCTATAGTA-G--A
1 TAGAGTCTATAGGAGGCTA
265300 T--AGTCTATAGGAGGCTA
1 TAGAGTCTATAGGAGGCTA
* *
265317 TGGAGTATATAG
1 TAGAGTCTATAG
265329 TCTATAGGAG
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
14 10 0.19
15 1 0.02
16 2 0.04
17 2 0.04
18 1 0.02
19 36 0.69
ACGTcount: A:0.30, C:0.10, G:0.31, T:0.29
Consensus pattern (19 bp):
TAGAGTCTATAGGAGGCTA
Left flanking sequence: Indices 264746 -- 265245
GGTTTCCTATAATATAGAGAGAGGGGCTCAGATGGATCCGATCCATTACTCAGATGGATCAGTGG
TTTCCTATAATATAGAGAGAGGGGCTCAGATGGATCCGATCCATTACTCAGATGGATCAGTGGTT
TCCTATAATATAGAGAGAGGGGCTCAGATGGATCAGTGGGATGGTCGACATCCATTTAGTGAGCA
GCTTCACTCCCGGCCCGGCATTTAGTGAGCGTGAGCAGCGGGCGAACCGAAAAGGGGATGATCCG
GATTCGAAAGCAGGGAACGGCAGACCTATTGATTGCAAAGGTTGGGGGGGTCGAATTGATCGTGT
CATTCTGACAAGTGTGCAACGTCCATCATGGTCCATCCATGTTGGTCTAGACTCCTTCTCCGTCA
CCACGAATGGGATGGTCAGACAAATATATGGTAAGGGGCACGTAGGGTCATTTATGCTCGTCAGG
TCGACGTCCGCCCCCGTTCAGGGCTCCTCCCCCAGCTAAGCTATC
Right flanking sequence: Indices 265329 -- 265828
TCTATAGGAGGCTAGATAGTAGGCCGTCGGGAGATAGATAGATAGGGGGGCGGCTATATCTAGTT
GGCACCCCCCCCCCTATAGAGATTAGAGATATGGCGATAGCCATACATATAGGGGTCACCCTATC
TATAAGATAAGATAGGAAGGGGTGGGGGGCGCCCCTATAGAGATATAGGCCGGTCGAGGAGTGAG
CGTAGCGAACCACCCTATAGATCTATACTCTATGGCTAACCCCCCAACTTTAGAGCCTATATATC
TATCTGGGCGCCGGGTTAGCCATATAGATCTATAGGGTAGGGGGAAACCCTCTCCCTCCCCCTCT
AGAGACCCTATATCTATATCTCTATCTGAATGAGACTATCTCTATCTGAATGAGACTATCTGAAT
GAGACTATCTGAATGAGACTATCTGAATGAGACTATCTATATGGGGGAGAGGGAAAACCTCGTCC
CCCTGACGTCGGACGAGTGCCCCACATATAGATAGGGGGCCCTCG
Found at i:265349 original size:26 final size:27
Alignment explanation
Indices: 265292--265350 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 27
265282 TATAGAGTCT
265292 ATAGTAGATAGTCTATAGGAGGCTATG
1 ATAGTAGATAGTCTATAGGAGGCTATG
* *
265319 -GAGTATATAGTCTATAGGAGGCTA-G
1 ATAGTAGATAGTCTATAGGAGGCTATG
265344 ATAGTAG
1 ATAGTAG
265351 GCCGTCGGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
25 1 0.04
26 26 0.96
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.29
Consensus pattern (27 bp):
ATAGTAGATAGTCTATAGGAGGCTATG
Left flanking sequence: Indices 264792 -- 265291
TACTCAGATGGATCAGTGGTTTCCTATAATATAGAGAGAGGGGCTCAGATGGATCCGATCCATTA
CTCAGATGGATCAGTGGTTTCCTATAATATAGAGAGAGGGGCTCAGATGGATCAGTGGGATGGTC
GACATCCATTTAGTGAGCAGCTTCACTCCCGGCCCGGCATTTAGTGAGCGTGAGCAGCGGGCGAA
CCGAAAAGGGGATGATCCGGATTCGAAAGCAGGGAACGGCAGACCTATTGATTGCAAAGGTTGGG
GGGGTCGAATTGATCGTGTCATTCTGACAAGTGTGCAACGTCCATCATGGTCCATCCATGTTGGT
CTAGACTCCTTCTCCGTCACCACGAATGGGATGGTCAGACAAATATATGGTAAGGGGCACGTAGG
GTCATTTATGCTCGTCAGGTCGACGTCCGCCCCCGTTCAGGGCTCCTCCCCCAGCTAAGCTATCT
AGAGTCTATAGGAGGCTATAGAGTCTCTAGGGGGCTATAGAGTCT
Right flanking sequence: Indices 265351 -- 265850
GCCGTCGGGAGATAGATAGATAGGGGGGCGGCTATATCTAGTTGGCACCCCCCCCCCTATAGAGA
TTAGAGATATGGCGATAGCCATACATATAGGGGTCACCCTATCTATAAGATAAGATAGGAAGGGG
TGGGGGGCGCCCCTATAGAGATATAGGCCGGTCGAGGAGTGAGCGTAGCGAACCACCCTATAGAT
CTATACTCTATGGCTAACCCCCCAACTTTAGAGCCTATATATCTATCTGGGCGCCGGGTTAGCCA
TATAGATCTATAGGGTAGGGGGAAACCCTCTCCCTCCCCCTCTAGAGACCCTATATCTATATCTC
TATCTGAATGAGACTATCTCTATCTGAATGAGACTATCTGAATGAGACTATCTGAATGAGACTAT
CTGAATGAGACTATCTATATGGGGGAGAGGGAAAACCTCGTCCCCCTGACGTCGGACGAGTGCCC
CACATATAGATAGGGGGCCCTCGATTGAGAAATCAATCGAGTGGT
Found at i:265695 original size:20 final size:20
Alignment explanation
Indices: 265670--265714 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
265660 CCTATATCTA
265670 TATCTCTATCTGAATGAGAC
1 TATCTCTATCTGAATGAGAC
265690 TATCTCTATCTGAATGAGAC
1 TATCTCTATCTGAATGAGAC
265710 TATCT
1 TATCT
265715 GAATGAGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (20 bp):
TATCTCTATCTGAATGAGAC
Left flanking sequence: Indices 265170 -- 265669
GGGGCACGTAGGGTCATTTATGCTCGTCAGGTCGACGTCCGCCCCCGTTCAGGGCTCCTCCCCCA
GCTAAGCTATCTAGAGTCTATAGGAGGCTATAGAGTCTCTAGGGGGCTATAGAGTCTATAGTAGA
TAGTCTATAGGAGGCTATGGAGTATATAGTCTATAGGAGGCTAGATAGTAGGCCGTCGGGAGATA
GATAGATAGGGGGGCGGCTATATCTAGTTGGCACCCCCCCCCCTATAGAGATTAGAGATATGGCG
ATAGCCATACATATAGGGGTCACCCTATCTATAAGATAAGATAGGAAGGGGTGGGGGGCGCCCCT
ATAGAGATATAGGCCGGTCGAGGAGTGAGCGTAGCGAACCACCCTATAGATCTATACTCTATGGC
TAACCCCCCAACTTTAGAGCCTATATATCTATCTGGGCGCCGGGTTAGCCATATAGATCTATAGG
GTAGGGGGAAACCCTCTCCCTCCCCCTCTAGAGACCCTATATCTA
Right flanking sequence: Indices 265715 -- 266214
GAATGAGACTATCTGAATGAGACTATCTGAATGAGACTATCTATATGGGGGAGAGGGAAAACCTC
GTCCCCCTGACGTCGGACGAGTGCCCCACATATAGATAGGGGGCCCTCGATTGAGAAATCAATCG
AGTGGTTCGCTACAAGATATAGAGAGTCTCATTCAGATAGAGATATAGAGAGAGATAGAGAGAGA
GATATAGAGATAGAGAGAGAAGAGACTTCAGAGTGAGAGAGTTTCATTCAGATAGTCTCATTCAG
ATAGTCAGTCTCATTCAGATAGATATATATATAGAGATAGAGAGAGAGATATAGAGTTCAGAGTT
CAGAGTTCAGAGTGAGATCTATATAGAGATAGAGAGAGAGATATGGAGATAGAGAGAGAAGAGAC
TGAAGAGTGAGTCTCATTCAGATAGGGGGCTGCGCTCACCCCTCGTCCTCCAGATATAGATATAG
GGGCGGACGAGTACCCCCTATATCTATATCTGTCCTCGCCCTCCA
Found at i:265712 original size:14 final size:14
Alignment explanation
Indices: 265695--265756 Score: 124
Period size: 14 Copynumber: 4.4 Consensus size: 14
265685 GAGACTATCT
265695 CTATCTGAATGAGA
1 CTATCTGAATGAGA
265709 CTATCTGAATGAGA
1 CTATCTGAATGAGA
265723 CTATCTGAATGAGA
1 CTATCTGAATGAGA
265737 CTATCTGAATGAGA
1 CTATCTGAATGAGA
265751 CTATCT
1 CTATCT
265757 ATATGGGGGA
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 48 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (14 bp):
CTATCTGAATGAGA
Left flanking sequence: Indices 265195 -- 265694
GTCAGGTCGACGTCCGCCCCCGTTCAGGGCTCCTCCCCCAGCTAAGCTATCTAGAGTCTATAGGA
GGCTATAGAGTCTCTAGGGGGCTATAGAGTCTATAGTAGATAGTCTATAGGAGGCTATGGAGTAT
ATAGTCTATAGGAGGCTAGATAGTAGGCCGTCGGGAGATAGATAGATAGGGGGGCGGCTATATCT
AGTTGGCACCCCCCCCCCTATAGAGATTAGAGATATGGCGATAGCCATACATATAGGGGTCACCC
TATCTATAAGATAAGATAGGAAGGGGTGGGGGGCGCCCCTATAGAGATATAGGCCGGTCGAGGAG
TGAGCGTAGCGAACCACCCTATAGATCTATACTCTATGGCTAACCCCCCAACTTTAGAGCCTATA
TATCTATCTGGGCGCCGGGTTAGCCATATAGATCTATAGGGTAGGGGGAAACCCTCTCCCTCCCC
CTCTAGAGACCCTATATCTATATCTCTATCTGAATGAGACTATCT
Right flanking sequence: Indices 265757 -- 266256
ATATGGGGGAGAGGGAAAACCTCGTCCCCCTGACGTCGGACGAGTGCCCCACATATAGATAGGGG
GCCCTCGATTGAGAAATCAATCGAGTGGTTCGCTACAAGATATAGAGAGTCTCATTCAGATAGAG
ATATAGAGAGAGATAGAGAGAGAGATATAGAGATAGAGAGAGAAGAGACTTCAGAGTGAGAGAGT
TTCATTCAGATAGTCTCATTCAGATAGTCAGTCTCATTCAGATAGATATATATATAGAGATAGAG
AGAGAGATATAGAGTTCAGAGTTCAGAGTTCAGAGTGAGATCTATATAGAGATAGAGAGAGAGAT
ATGGAGATAGAGAGAGAAGAGACTGAAGAGTGAGTCTCATTCAGATAGGGGGCTGCGCTCACCCC
TCGTCCTCCAGATATAGATATAGGGGCGGACGAGTACCCCCTATATCTATATCTGTCCTCGCCCT
CCAGAGAGAATAGAGGGGCGGGCGAGTGGTTCGCTACGCTCACTC
Found at i:265900 original size:12 final size:12
Alignment explanation
Indices: 265883--265919 Score: 65
Period size: 12 Copynumber: 3.1 Consensus size: 12
265873 TCATTCAGAT
265883 AGAGATATAGAG
1 AGAGATATAGAG
*
265895 AGAGATAGAGAG
1 AGAGATATAGAG
265907 AGAGATATAGAG
1 AGAGATATAGAG
265919 A
1 A
265920 TAGAGAGAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.51, C:0.00, G:0.35, T:0.14
Consensus pattern (12 bp):
AGAGATATAGAG
Left flanking sequence: Indices 265383 -- 265882
TATATCTAGTTGGCACCCCCCCCCCTATAGAGATTAGAGATATGGCGATAGCCATACATATAGGG
GTCACCCTATCTATAAGATAAGATAGGAAGGGGTGGGGGGCGCCCCTATAGAGATATAGGCCGGT
CGAGGAGTGAGCGTAGCGAACCACCCTATAGATCTATACTCTATGGCTAACCCCCCAACTTTAGA
GCCTATATATCTATCTGGGCGCCGGGTTAGCCATATAGATCTATAGGGTAGGGGGAAACCCTCTC
CCTCCCCCTCTAGAGACCCTATATCTATATCTCTATCTGAATGAGACTATCTCTATCTGAATGAG
ACTATCTGAATGAGACTATCTGAATGAGACTATCTGAATGAGACTATCTATATGGGGGAGAGGGA
AAACCTCGTCCCCCTGACGTCGGACGAGTGCCCCACATATAGATAGGGGGCCCTCGATTGAGAAA
TCAATCGAGTGGTTCGCTACAAGATATAGAGAGTCTCATTCAGAT
Right flanking sequence: Indices 265920 -- 266419
TAGAGAGAGAAGAGACTTCAGAGTGAGAGAGTTTCATTCAGATAGTCTCATTCAGATAGTCAGTC
TCATTCAGATAGATATATATATAGAGATAGAGAGAGAGATATAGAGTTCAGAGTTCAGAGTTCAG
AGTGAGATCTATATAGAGATAGAGAGAGAGATATGGAGATAGAGAGAGAAGAGACTGAAGAGTGA
GTCTCATTCAGATAGGGGGCTGCGCTCACCCCTCGTCCTCCAGATATAGATATAGGGGCGGACGA
GTACCCCCTATATCTATATCTGTCCTCGCCCTCCAGAGAGAATAGAGGGGCGGGCGAGTGGTTCG
CTACGCTCACTCCTCATCTCTCAATTGAGTGCATCTATAGAGAGGGGGGCCCTCGGCCTCCCAAG
CAGCCTATATAGCCCCCCCATATAGATATGGGGGAGCCTATATTCTATATCTATGGGGGGGCCCG
TCGGCGCGAGGGCCCCCCCCATATATAAGATATAGAGGGACCCCA
Found at i:265902 original size:10 final size:10
Alignment explanation
Indices: 265883--265934 Score: 61
Period size: 10 Copynumber: 5.3 Consensus size: 10
265873 TCATTCAGAT
*
265883 AGAGATATAG
1 AGAGAGATAG
265893 AGAGAGATAG
1 AGAGAGATAG
* *
265903 AGAGAGAGAT
1 AGAGAGATAG
*
265913 ATAGAGATAG
1 AGAGAGATAG
265923 AGAGAGA-AG
1 AGAGAGATAG
265932 AGA
1 AGA
265935 CTTCAGAGTG
Statistics
Matches: 35, Mismatches: 7, Indels: 1
0.81 0.16 0.02
Matches are distributed among these distances:
9 5 0.14
10 30 0.86
ACGTcount: A:0.52, C:0.00, G:0.37, T:0.12
Consensus pattern (10 bp):
AGAGAGATAG
Left flanking sequence: Indices 265383 -- 265882
TATATCTAGTTGGCACCCCCCCCCCTATAGAGATTAGAGATATGGCGATAGCCATACATATAGGG
GTCACCCTATCTATAAGATAAGATAGGAAGGGGTGGGGGGCGCCCCTATAGAGATATAGGCCGGT
CGAGGAGTGAGCGTAGCGAACCACCCTATAGATCTATACTCTATGGCTAACCCCCCAACTTTAGA
GCCTATATATCTATCTGGGCGCCGGGTTAGCCATATAGATCTATAGGGTAGGGGGAAACCCTCTC
CCTCCCCCTCTAGAGACCCTATATCTATATCTCTATCTGAATGAGACTATCTCTATCTGAATGAG
ACTATCTGAATGAGACTATCTGAATGAGACTATCTGAATGAGACTATCTATATGGGGGAGAGGGA
AAACCTCGTCCCCCTGACGTCGGACGAGTGCCCCACATATAGATAGGGGGCCCTCGATTGAGAAA
TCAATCGAGTGGTTCGCTACAAGATATAGAGAGTCTCATTCAGAT
Right flanking sequence: Indices 265935 -- 266434
CTTCAGAGTGAGAGAGTTTCATTCAGATAGTCTCATTCAGATAGTCAGTCTCATTCAGATAGATA
TATATATAGAGATAGAGAGAGAGATATAGAGTTCAGAGTTCAGAGTTCAGAGTGAGATCTATATA
GAGATAGAGAGAGAGATATGGAGATAGAGAGAGAAGAGACTGAAGAGTGAGTCTCATTCAGATAG
GGGGCTGCGCTCACCCCTCGTCCTCCAGATATAGATATAGGGGCGGACGAGTACCCCCTATATCT
ATATCTGTCCTCGCCCTCCAGAGAGAATAGAGGGGCGGGCGAGTGGTTCGCTACGCTCACTCCTC
ATCTCTCAATTGAGTGCATCTATAGAGAGGGGGGCCCTCGGCCTCCCAAGCAGCCTATATAGCCC
CCCCATATAGATATGGGGGAGCCTATATTCTATATCTATGGGGGGGCCCGTCGGCGCGAGGGCCC
CCCCCATATATAAGATATAGAGGGACCCCATATCTATTCTATATA
Found at i:265910 original size:14 final size:14
Alignment explanation
Indices: 265891--265927 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
265881 ATAGAGATAT
265891 AGAGAGAGATAGAG
1 AGAGAGAGATAGAG
*
265905 AGAGAGATATAGAG
1 AGAGAGAGATAGAG
*
265919 ATAGAGAGA
1 AGAGAGAGA
265928 GAAGAGACTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.38, T:0.11
Consensus pattern (14 bp):
AGAGAGAGATAGAG
Left flanking sequence: Indices 265391 -- 265890
GTTGGCACCCCCCCCCCTATAGAGATTAGAGATATGGCGATAGCCATACATATAGGGGTCACCCT
ATCTATAAGATAAGATAGGAAGGGGTGGGGGGCGCCCCTATAGAGATATAGGCCGGTCGAGGAGT
GAGCGTAGCGAACCACCCTATAGATCTATACTCTATGGCTAACCCCCCAACTTTAGAGCCTATAT
ATCTATCTGGGCGCCGGGTTAGCCATATAGATCTATAGGGTAGGGGGAAACCCTCTCCCTCCCCC
TCTAGAGACCCTATATCTATATCTCTATCTGAATGAGACTATCTCTATCTGAATGAGACTATCTG
AATGAGACTATCTGAATGAGACTATCTGAATGAGACTATCTATATGGGGGAGAGGGAAAACCTCG
TCCCCCTGACGTCGGACGAGTGCCCCACATATAGATAGGGGGCCCTCGATTGAGAAATCAATCGA
GTGGTTCGCTACAAGATATAGAGAGTCTCATTCAGATAGAGATAT
Right flanking sequence: Indices 265928 -- 266427
GAAGAGACTTCAGAGTGAGAGAGTTTCATTCAGATAGTCTCATTCAGATAGTCAGTCTCATTCAG
ATAGATATATATATAGAGATAGAGAGAGAGATATAGAGTTCAGAGTTCAGAGTTCAGAGTGAGAT
CTATATAGAGATAGAGAGAGAGATATGGAGATAGAGAGAGAAGAGACTGAAGAGTGAGTCTCATT
CAGATAGGGGGCTGCGCTCACCCCTCGTCCTCCAGATATAGATATAGGGGCGGACGAGTACCCCC
TATATCTATATCTGTCCTCGCCCTCCAGAGAGAATAGAGGGGCGGGCGAGTGGTTCGCTACGCTC
ACTCCTCATCTCTCAATTGAGTGCATCTATAGAGAGGGGGGCCCTCGGCCTCCCAAGCAGCCTAT
ATAGCCCCCCCATATAGATATGGGGGAGCCTATATTCTATATCTATGGGGGGGCCCGTCGGCGCG
AGGGCCCCCCCCATATATAAGATATAGAGGGACCCCATATCTATT
Found at i:265972 original size:14 final size:14
Alignment explanation
Indices: 265953--265980 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
265943 TGAGAGAGTT
265953 TCATTCAGATAGTC
1 TCATTCAGATAGTC
265967 TCATTCAGATAGTC
1 TCATTCAGATAGTC
265981 AGTCTCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (14 bp):
TCATTCAGATAGTC
Left flanking sequence: Indices 265453 -- 265952
CCTATCTATAAGATAAGATAGGAAGGGGTGGGGGGCGCCCCTATAGAGATATAGGCCGGTCGAGG
AGTGAGCGTAGCGAACCACCCTATAGATCTATACTCTATGGCTAACCCCCCAACTTTAGAGCCTA
TATATCTATCTGGGCGCCGGGTTAGCCATATAGATCTATAGGGTAGGGGGAAACCCTCTCCCTCC
CCCTCTAGAGACCCTATATCTATATCTCTATCTGAATGAGACTATCTCTATCTGAATGAGACTAT
CTGAATGAGACTATCTGAATGAGACTATCTGAATGAGACTATCTATATGGGGGAGAGGGAAAACC
TCGTCCCCCTGACGTCGGACGAGTGCCCCACATATAGATAGGGGGCCCTCGATTGAGAAATCAAT
CGAGTGGTTCGCTACAAGATATAGAGAGTCTCATTCAGATAGAGATATAGAGAGAGATAGAGAGA
GAGATATAGAGATAGAGAGAGAAGAGACTTCAGAGTGAGAGAGTT
Right flanking sequence: Indices 265981 -- 266480
AGTCTCATTCAGATAGATATATATATAGAGATAGAGAGAGAGATATAGAGTTCAGAGTTCAGAGT
TCAGAGTGAGATCTATATAGAGATAGAGAGAGAGATATGGAGATAGAGAGAGAAGAGACTGAAGA
GTGAGTCTCATTCAGATAGGGGGCTGCGCTCACCCCTCGTCCTCCAGATATAGATATAGGGGCGG
ACGAGTACCCCCTATATCTATATCTGTCCTCGCCCTCCAGAGAGAATAGAGGGGCGGGCGAGTGG
TTCGCTACGCTCACTCCTCATCTCTCAATTGAGTGCATCTATAGAGAGGGGGGCCCTCGGCCTCC
CAAGCAGCCTATATAGCCCCCCCATATAGATATGGGGGAGCCTATATTCTATATCTATGGGGGGG
CCCGTCGGCGCGAGGGCCCCCCCCATATATAAGATATAGAGGGACCCCATATCTATTCTATATAT
AGGGGGGGCGCCCTCCATAGTTCATAATTCTAGATAGGCGCCCGC
Found at i:266039 original size:7 final size:7
Alignment explanation
Indices: 266027--266052 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
266017 AGAGAGATAT
266027 AGAGTTC
1 AGAGTTC
266034 AGAGTTC
1 AGAGTTC
266041 AGAGTTC
1 AGAGTTC
266048 AGAGT
1 AGAGT
266053 GAGATCTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.31, C:0.12, G:0.31, T:0.27
Consensus pattern (7 bp):
AGAGTTC
Left flanking sequence: Indices 265527 -- 266026
AGCGAACCACCCTATAGATCTATACTCTATGGCTAACCCCCCAACTTTAGAGCCTATATATCTAT
CTGGGCGCCGGGTTAGCCATATAGATCTATAGGGTAGGGGGAAACCCTCTCCCTCCCCCTCTAGA
GACCCTATATCTATATCTCTATCTGAATGAGACTATCTCTATCTGAATGAGACTATCTGAATGAG
ACTATCTGAATGAGACTATCTGAATGAGACTATCTATATGGGGGAGAGGGAAAACCTCGTCCCCC
TGACGTCGGACGAGTGCCCCACATATAGATAGGGGGCCCTCGATTGAGAAATCAATCGAGTGGTT
CGCTACAAGATATAGAGAGTCTCATTCAGATAGAGATATAGAGAGAGATAGAGAGAGAGATATAG
AGATAGAGAGAGAAGAGACTTCAGAGTGAGAGAGTTTCATTCAGATAGTCTCATTCAGATAGTCA
GTCTCATTCAGATAGATATATATATAGAGATAGAGAGAGAGATAT
Right flanking sequence: Indices 266053 -- 266552
GAGATCTATATAGAGATAGAGAGAGAGATATGGAGATAGAGAGAGAAGAGACTGAAGAGTGAGTC
TCATTCAGATAGGGGGCTGCGCTCACCCCTCGTCCTCCAGATATAGATATAGGGGCGGACGAGTA
CCCCCTATATCTATATCTGTCCTCGCCCTCCAGAGAGAATAGAGGGGCGGGCGAGTGGTTCGCTA
CGCTCACTCCTCATCTCTCAATTGAGTGCATCTATAGAGAGGGGGGCCCTCGGCCTCCCAAGCAG
CCTATATAGCCCCCCCATATAGATATGGGGGAGCCTATATTCTATATCTATGGGGGGGCCCGTCG
GCGCGAGGGCCCCCCCCATATATAAGATATAGAGGGACCCCATATCTATTCTATATATAGGGGGG
GCGCCCTCCATAGTTCATAATTCTAGATAGGCGCCCGCCCAGATCTGATCTCCCATAGAAGATAG
AGAGCCGAGATAGAATAGAATAGAGAGGGGGGGGAGGGGGCCATC
Found at i:266083 original size:20 final size:20
Alignment explanation
Indices: 266060--266098 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
266050 AGTGAGATCT
266060 ATATAGAGATAGAGAGAGAG
1 ATATAGAGATAGAGAGAGAG
*
266080 ATATGGAGATAGAGAGAGA
1 ATATAGAGATAGAGAGAGA
266099 AGAGACTGAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.49, C:0.00, G:0.36, T:0.15
Consensus pattern (20 bp):
ATATAGAGATAGAGAGAGAG
Left flanking sequence: Indices 265560 -- 266059
TAACCCCCCAACTTTAGAGCCTATATATCTATCTGGGCGCCGGGTTAGCCATATAGATCTATAGG
GTAGGGGGAAACCCTCTCCCTCCCCCTCTAGAGACCCTATATCTATATCTCTATCTGAATGAGAC
TATCTCTATCTGAATGAGACTATCTGAATGAGACTATCTGAATGAGACTATCTGAATGAGACTAT
CTATATGGGGGAGAGGGAAAACCTCGTCCCCCTGACGTCGGACGAGTGCCCCACATATAGATAGG
GGGCCCTCGATTGAGAAATCAATCGAGTGGTTCGCTACAAGATATAGAGAGTCTCATTCAGATAG
AGATATAGAGAGAGATAGAGAGAGAGATATAGAGATAGAGAGAGAAGAGACTTCAGAGTGAGAGA
GTTTCATTCAGATAGTCTCATTCAGATAGTCAGTCTCATTCAGATAGATATATATATAGAGATAG
AGAGAGAGATATAGAGTTCAGAGTTCAGAGTTCAGAGTGAGATCT
Right flanking sequence: Indices 266099 -- 266598
AGAGACTGAAGAGTGAGTCTCATTCAGATAGGGGGCTGCGCTCACCCCTCGTCCTCCAGATATAG
ATATAGGGGCGGACGAGTACCCCCTATATCTATATCTGTCCTCGCCCTCCAGAGAGAATAGAGGG
GCGGGCGAGTGGTTCGCTACGCTCACTCCTCATCTCTCAATTGAGTGCATCTATAGAGAGGGGGG
CCCTCGGCCTCCCAAGCAGCCTATATAGCCCCCCCATATAGATATGGGGGAGCCTATATTCTATA
TCTATGGGGGGGCCCGTCGGCGCGAGGGCCCCCCCCATATATAAGATATAGAGGGACCCCATATC
TATTCTATATATAGGGGGGGCGCCCTCCATAGTTCATAATTCTAGATAGGCGCCCGCCCAGATCT
GATCTCCCATAGAAGATAGAGAGCCGAGATAGAATAGAATAGAGAGGGGGGGGAGGGGGCCATCT
CTCTATATAGACTAGCCATCTCTCTAAACTAGCCATCTATATAGA
Found at i:266796 original size:44 final size:44
Alignment explanation
Indices: 266748--266842 Score: 190
Period size: 44 Copynumber: 2.2 Consensus size: 44
266738 GGGGGGGGGG
266748 CGGGAGAGGGCTATCGCTCACACCCCCATAGGCGCCACCTTCGT
1 CGGGAGAGGGCTATCGCTCACACCCCCATAGGCGCCACCTTCGT
266792 CGGGAGAGGGCTATCGCTCACACCCCCATAGGCGCCACCTTCGT
1 CGGGAGAGGGCTATCGCTCACACCCCCATAGGCGCCACCTTCGT
266836 CGGGAGA
1 CGGGAGA
266843 ACCTCGACCT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 51 1.00
ACGTcount: A:0.19, C:0.37, G:0.29, T:0.15
Consensus pattern (44 bp):
CGGGAGAGGGCTATCGCTCACACCCCCATAGGCGCCACCTTCGT
Left flanking sequence: Indices 266248 -- 266747
CGCTCACTCCTCATCTCTCAATTGAGTGCATCTATAGAGAGGGGGGCCCTCGGCCTCCCAAGCAG
CCTATATAGCCCCCCCATATAGATATGGGGGAGCCTATATTCTATATCTATGGGGGGGCCCGTCG
GCGCGAGGGCCCCCCCCATATATAAGATATAGAGGGACCCCATATCTATTCTATATATAGGGGGG
GCGCCCTCCATAGTTCATAATTCTAGATAGGCGCCCGCCCAGATCTGATCTCCCATAGAAGATAG
AGAGCCGAGATAGAATAGAATAGAGAGGGGGGGGAGGGGGCCATCTCTCTATATAGACTAGCCAT
CTCTCTAAACTAGCCATCTATATAGAGAGGGGGGGCCATATATCTCTCTCTAGAGGGGGAAGTCA
TCTATCGATCCCCTATCTATATATGGCCAATGAAACTCTATATACCATCGCTCACACCCCCCCCC
CCTCTCTATATAGATGGGATAGAGATATATAGGCGGGGGGGGGGG
Right flanking sequence: Indices 266843 -- 267342
ACCTCGACCTCCTCTCCCTCCTCCCATATAGAACTATAGGGCCTCCCCCAGCTATAGAATAGAAG
CTATATAGAGTAGGCCGCCGGGAGAGGGCCAGGGTTGGTTGGCGACTATAGATAAGATAGTCGCC
CTCGACTCTATATGGTTTAGTTGGCCTGTATATAGTTTAGTTGGCCCTCTATAGAGTATAGATAG
ATGGCCCGCCCTCTATTTTCTCCGGGGGTCTGCCCATCTATATAGATAGATAGATCTCTATATGC
GGGCAGGCGCCATATAGAGAAGATAAGATCTATAGGGAGGGGGGGGGGGGGGGTGCCATATCTAG
ATAGGCCCCCCCCTCCATAGAATCTAGGGGAGCCCCCCTCCCTATAGATCTTATCTTCTCTATGG
GGGGGCCCTCCTCTCCCGCCCGACGAAGGAGGGCCGGCACTCCCGCTTACGCGCACCTTCGTCGG
GAGCCCTCGATCTTTGTTCCAATCAATAGGTTGGGGTCGGCCGGG
Found at i:267010 original size:20 final size:20
Alignment explanation
Indices: 266981--267018 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
266971 CCCTCGACTC
*
266981 TATATGGTTTAGTTGGCCTG
1 TATATAGTTTAGTTGGCCTG
267001 TATATAGTTTAGTTGGCC
1 TATATAGTTTAGTTGGCC
267019 CTCTATAGAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.11, G:0.26, T:0.45
Consensus pattern (20 bp):
TATATAGTTTAGTTGGCCTG
Left flanking sequence: Indices 266481 -- 266980
CCAGATCTGATCTCCCATAGAAGATAGAGAGCCGAGATAGAATAGAATAGAGAGGGGGGGGAGGG
GGCCATCTCTCTATATAGACTAGCCATCTCTCTAAACTAGCCATCTATATAGAGAGGGGGGGCCA
TATATCTCTCTCTAGAGGGGGAAGTCATCTATCGATCCCCTATCTATATATGGCCAATGAAACTC
TATATACCATCGCTCACACCCCCCCCCCCTCTCTATATAGATGGGATAGAGATATATAGGCGGGG
GGGGGGGCGGGAGAGGGCTATCGCTCACACCCCCATAGGCGCCACCTTCGTCGGGAGAGGGCTAT
CGCTCACACCCCCATAGGCGCCACCTTCGTCGGGAGAACCTCGACCTCCTCTCCCTCCTCCCATA
TAGAACTATAGGGCCTCCCCCAGCTATAGAATAGAAGCTATATAGAGTAGGCCGCCGGGAGAGGG
CCAGGGTTGGTTGGCGACTATAGATAAGATAGTCGCCCTCGACTC
Right flanking sequence: Indices 267019 -- 267518
CTCTATAGAGTATAGATAGATGGCCCGCCCTCTATTTTCTCCGGGGGTCTGCCCATCTATATAGA
TAGATAGATCTCTATATGCGGGCAGGCGCCATATAGAGAAGATAAGATCTATAGGGAGGGGGGGG
GGGGGGGTGCCATATCTAGATAGGCCCCCCCCTCCATAGAATCTAGGGGAGCCCCCCTCCCTATA
GATCTTATCTTCTCTATGGGGGGGCCCTCCTCTCCCGCCCGACGAAGGAGGGCCGGCACTCCCGC
TTACGCGCACCTTCGTCGGGAGCCCTCGATCTTTGTTCCAATCAATAGGTTGGGGTCGGCCGGGG
GCGCATAAATGACCCGCCCTCTCTTTAGCCTTTGCCGGATCCAGATACTACGAGTCCTCCGTCCC
AGATTGATTCCCTCTCCGGTCGAGTCTCCCATGAGTCTAGTCGGTCGAGCCGGATGCAGAAGTGC
AGGTCGAGCCCGGAAGTCAGATATAGATTAGATAGGGGCCCTCGA
Found at i:269765 original size:18 final size:19
Alignment explanation
Indices: 269731--269766 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
269721 GTCCGACCCC
*
269731 TATCTAGATATGGGGCCCA
1 TATCTAGATAGGGGGCCCA
269750 TATCTAGAT-GGGGGCCC
1 TATCTAGATAGGGGGCCC
269767 GCCCCTATAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.22, C:0.22, G:0.31, T:0.25
Consensus pattern (19 bp):
TATCTAGATAGGGGGCCCA
Left flanking sequence: Indices 269231 -- 269730
ATATGGGGGAGCGAGCATAAATGCCCTCCTCCCCCGGGGGAGATCTAAAGAACCTCCCCCTCTCC
CGTTGCCATATCTATATATAGGCCCCCCCCTCCCGGATCTCTATATAGGCCTCCTCGACCCAACC
CCCTATATAGAGAGATGGCCCCCCCCACCCCAACCCCCCCCCCTCCCCTCTCTATAGATCTATAT
GGGCCCGGGGTGGGCGGGCGCCTATAGAGATCTATAGGGGTCCCGATAGGGCGTTGGCCTATAGT
CTCATTCAGGGCCCCATATAGAGAATTCTAGATAGGGGGTGGGTGCCGAGCGCAGAAATGACCCG
CTGGTCGAGCCACATCATCTATATACGTGATATGACTGATCACTCATATCACGTATATAGATGAT
GTAGCTCGACCCCCCGATGGCGGCTCCCATAGAGAGGGGGGGCCCCATCTAGAATCGGAGGGGGT
CGAGGAAGCCGAGCCCTATATATCTCACTCGTCCGGTCCGACCCC
Right flanking sequence: Indices 269767 -- 270266
GCCCCTATATCTATATTTGGGCCTCCCCCGCCCCCCTCTCTCTCTCTATATATGGACTGGATAGT
TGCCCTCGACCCCATCTAGATATTCTCTATAGGGGCCCCCCTTTCTATTAGAGTTCTAGGGCCCC
CCCCTATATAGATATGGGAGCCGAGCCCTCTCTCGCCCATAGAGAGAGAGGGGGGGGAGCCGAGA
TATAGAGAGAGGGGGGGGGCACCATCATGCATCATCTATTCATATATATACGTGATACGACGTGA
TAGTGATATTGGATACGAGTGATTCATGCTAAATGGAGAAGTGGGCTATTCTATTGAGTTTGAGT
CGCTTTCACAGTCAGCGGACCAGCGATGGATGAGATTCCAACGGAGGTTACCGAGTGAGATCAGG
TCGCTCCAACCCGGGGCCGATCCAACGCTCGACCCACTAATATAGATATGATCTATATGGGCCGC
TCCAACCGGGCGACCCGACTTGATCTCCGAGCAACCTTGATCTCA
Found at i:271563 original size:18 final size:18
Alignment explanation
Indices: 271540--271576 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
271530 TGAATATGGC
271540 CCAGATATGGAGAGAGGG
1 CCAGATATGGAGAGAGGG
271558 CCAGATATGGAGAGAGGG
1 CCAGATATGGAGAGAGGG
271576 C
1 C
271577 GTGGGCTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.14, G:0.43, T:0.11
Consensus pattern (18 bp):
CCAGATATGGAGAGAGGG
Left flanking sequence: Indices 271040 -- 271539
CTACCGCCATCAAAACCCTCTAGCTTCGGTAGTATTCGTCGCACCCGGCTCTACTGTGCCATTTC
TCCATCCCCCAACCTCTCCTGTTTGATCGGTGCTGCATACATCTCCCAGAACGGGACCACCATAC
GAGTGTGAGTTCAAGTTCCCGTTTCAAACATGAATTCGAATGAATATTGAGATGAGGCGAGATGG
CGAGCGAGATGTATAGTATAGGAAGTGGGAGCGAGATGGGTAAGTATATCTGAGAACAGAACAAC
ACCGCTGAAAGAATGTGACTGAAATAAAGAAAGGCGCCACGCCCCGGGAGTCCATTTCTCCTTTC
CGCCCGTGTTCTATACTATGATTCTCCACCCCCAGCCCAGATGCAAACGTAGCGGCTTCATTCAA
TACCCAACCTTCGATACCCCGGACGCAGGCATTCAATTTCGTATGAATAGGGTGTGCAATGTTTC
TGTCCGCCCCATACGAATGAATAGGGTGGGTGGGATGAATATGGC
Right flanking sequence: Indices 271577 -- 272076
GTGGGCTTACTATGAAACTATGAATGGTGGGCCCACAGAATTGCTGAATCTTCCAACAATCCAAT
CCATTATTAGACTGGACTGAGACTGGACTGACTAGACGAATGGGAAGAATGGGCCGAGGAAGCGG
TTGGTAATTAAAGTACCCTATCCATTATGGCTCTGCCTCCCCATCTTCTGTTTCATGAACCATCG
ATTCACGGGGCCCCCTTTCTCGTGAAATCCATAGCTGGGCGGGTCCAGCAGCCCCGTTAGTTAAA
ACCAACACCCCGCCCCGAGCCACCTGGGCCATTATCTCAATTGGATCGGGGGGCCGGGCCCACAA
TTCTGAGCTCCCATGGTGAATTCCAAGTCATCTGCCGCCCTTCCAACAAAGGCTACCAGTTCTGC
GCGGGCGGGTATCGATTAACCGGCATAGGCGTACAACGGAAAATACCAGCTAACGGGCCGGGCCT
TATCTATATATGGGCTGCCGAAGAGGGGAATAAAGTCCCCTCCCC
Found at i:272246 original size:5 final size:5
Alignment explanation
Indices: 272236--272301 Score: 132
Period size: 5 Copynumber: 13.2 Consensus size: 5
272226 GATAGAAATT
272236 ATAGC ATAGC ATAGC ATAGC ATAGC ATAGC ATAGC ATAGC ATAGC ATAGC
1 ATAGC ATAGC ATAGC ATAGC ATAGC ATAGC ATAGC ATAGC ATAGC ATAGC
272286 ATAGC ATAGC ATAGC A
1 ATAGC ATAGC ATAGC A
272302 ACGCCCATTC
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 61 1.00
ACGTcount: A:0.41, C:0.20, G:0.20, T:0.20
Consensus pattern (5 bp):
ATAGC
Left flanking sequence: Indices 271736 -- 272235
GCTCTGCCTCCCCATCTTCTGTTTCATGAACCATCGATTCACGGGGCCCCCTTTCTCGTGAAATC
CATAGCTGGGCGGGTCCAGCAGCCCCGTTAGTTAAAACCAACACCCCGCCCCGAGCCACCTGGGC
CATTATCTCAATTGGATCGGGGGGCCGGGCCCACAATTCTGAGCTCCCATGGTGAATTCCAAGTC
ATCTGCCGCCCTTCCAACAAAGGCTACCAGTTCTGCGCGGGCGGGTATCGATTAACCGGCATAGG
CGTACAACGGAAAATACCAGCTAACGGGCCGGGCCTTATCTATATATGGGCTGCCGAAGAGGGGA
ATAAAGTCCCCTCCCCTTGAATCATAGAAGTTGGGAGCGCCATCCTAGATTTTCCTTTTATGGCG
ATCGATTTCGCGCTCTCTGCGGTTGGGCATCTGATTCGCCCTCGCCCTATCTGTGTGGCCCGGGC
GAAAGACCATGAGGACTATGGGTAGAGTAGGAGTAGATAGAAATT
Right flanking sequence: Indices 272302 -- 272801
ACGCCCATTCTAGGTGCTTAGCAGACGTAGCGAACCCGGATTGCATTATTGACTTGACAAGAAAT
AGAGTTCAGTTCCTAACCGCCCAGAACAACTCGAGTCCTACGCCCCGATTCGATCGGCCAGATCT
CCCATTCGTTTACTCGCCAACCCGGGCCCCGGGGCGCCGTTCAACGCTACACGGGTGGGCGCTAT
TGTCGCCATAGCGGAGAACTTCTCTTCCTTCTCGGCCGCCGGATCCATTCGGCCTCCCATCTCTG
CCCAAATCCGGTGTATGCTATGCCATAGCTGGTGAGCAGCCCCCCTCTATCTAATCGGCAGCCCC
CTCCATATGACATGACATCTTTTCTCTTTTCTCAACGGCCCGCTTCGATGCTTTCATAAGTGAGT
GATCCGGCTGTCGTTCGTTCTATCCGCGCGCCCGACGAGCTTACTCCTCGCACCGAATGGCATAG
ATTTTCATTCCAGCGTAGCATAAGCATACATTTCATTCAGGGGTC
Found at i:272988 original size:5 final size:5
Alignment explanation
Indices: 272978--273025 Score: 96
Period size: 5 Copynumber: 9.6 Consensus size: 5
272968 TTGGCCATAT
272978 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATC
1 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATC
273026 CCAGTTGGCC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.40, C:0.21, G:0.00, T:0.40
Consensus pattern (5 bp):
ATCTA
Left flanking sequence: Indices 272478 -- 272977
CTACACGGGTGGGCGCTATTGTCGCCATAGCGGAGAACTTCTCTTCCTTCTCGGCCGCCGGATCC
ATTCGGCCTCCCATCTCTGCCCAAATCCGGTGTATGCTATGCCATAGCTGGTGAGCAGCCCCCCT
CTATCTAATCGGCAGCCCCCTCCATATGACATGACATCTTTTCTCTTTTCTCAACGGCCCGCTTC
GATGCTTTCATAAGTGAGTGATCCGGCTGTCGTTCGTTCTATCCGCGCGCCCGACGAGCTTACTC
CTCGCACCGAATGGCATAGATTTTCATTCCAGCGTAGCATAAGCATACATTTCATTCAGGGGTCA
TTCATAGTTGCTAGTGGGGTGCCCCTATCTCTTCTCGGTCGAGAGGACAAGTCGAGCCCACAATG
ATAAGAGATAAGCGGGCCCGTGCAATTCATATCCGGTCCCTACCCCATAACCCCCAATTCGGGGG
GCTGTCGCCATATGTCTAATCTAATCTAATCCCAGTTGGCCATAT
Right flanking sequence: Indices 273026 -- 273525
CCAGTTGGCCATATATCTAATCTATATATAGGAGGGGGAGGGGTGCGAGAGCCTATAATAGATCT
ATATAGATCTCAGTCGGTCGAGCGTATACTTGCGATACTTTACGCGCCCGCCCTCCACGAAATGT
TTCTTCCGCCCGCCACCTCTTCCTTCCTTTCTTCACGCCCGCACTCCCAGAATCGACCCCCCGCA
ATGACCAATGCAATGGATTCCCGGAGTCATAGAGACATGTCATATGGATATATCTGGCTATATGT
AATTGGCCGTAACAGTAACATGATAGATACACCTTTCAATTGTCAAGCTCCTTTCAATCATATTA
CAATATACCCATCACTACACTACAGACGTTATATGAGATGCTCTCCTCTCCCCGGGGCGGTCGAG
GCATCACCGCATCTCTCACTTTCGCTTCACTCCGTTTGGTTAGTTCAAATCCTTTTTGGGGTGCC
CCATATCTATATGGGATAGTAGTGCTGGCCCTATGGGGATAGCTA
Found at i:273996 original size:39 final size:39
Alignment explanation
Indices: 273942--274048 Score: 214
Period size: 39 Copynumber: 2.7 Consensus size: 39
273932 CGATTGCCCG
273942 GGGCATCTGCCCACTATCTACAATCGGGGGGCCCCTATC
1 GGGCATCTGCCCACTATCTACAATCGGGGGGCCCCTATC
273981 GGGCATCTGCCCACTATCTACAATCGGGGGGCCCCTATC
1 GGGCATCTGCCCACTATCTACAATCGGGGGGCCCCTATC
274020 GGGCATCTGCCCACTATCTACAATCGGGG
1 GGGCATCTGCCCACTATCTACAATCGGGG
274049 CCCCGGGGCA
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 68 1.00
ACGTcount: A:0.19, C:0.35, G:0.26, T:0.21
Consensus pattern (39 bp):
GGGCATCTGCCCACTATCTACAATCGGGGGGCCCCTATC
Left flanking sequence: Indices 273442 -- 273941
TCACTCCGTTTGGTTAGTTCAAATCCTTTTTGGGGTGCCCCATATCTATATGGGATAGTAGTGCT
GGCCCTATGGGGATAGCTAGTAGAGTAGCAGGCGGTGAATCATCCCCATCTAGTTCTCTATGGGA
TGCGGCTGGGCGGTAAGACCCGTGTTGACGAGTACCAACGGCCCATATCCCATATCAAGACCGTG
TTGGTGTTGCTTGCGTGGGCATGTCAGTCATATTACGTACTCGATACGGACGGGTATTCATTCAC
ACTATTCTATTGGTGTTGACGCGGCGGGCCACCATATCTATATCTATATCTTGATTGGCCAATTG
AACTATATAGACTATAGATAGATACGCGACCGGATGGGTTACAATTCCTAGCCGGGTCGAGGCCG
AGGGCGACGTCGGGCCGGGGCCATATAGAGAGTTCAGGGTAAGGGCCCTCTGGGGAGAGGAGGCC
GAGGACCCCATATCCATATCCATATAGGGGGTACTCGATTGCCCG
Right flanking sequence: Indices 274049 -- 274548
CCCCGGGGCATCGGGAGGCTAGTCGAACGAACTGGCTAGTCGAACTGGCTGGTCGGCTAACAACC
CCAACTAACTCTATTTGGCTAGTCGTCATTATCTCTATCTCTCAGTCGAGTGTCGGCCCCCATAT
CTATATAGAGGGGGCCGGGGCACCACATCAATCATCCAGAATCTAGATTCTCTATACTATATATG
GCATCCATCTCATCTAATCTAGCACCACGTCATCCCACTGAATAGGTAGCGGGGGCCGGGGCACC
GGATGAGATGAAGAGGATGACTGGTTGCGAACTATTATCTCATCCTTATTCTATTATCTTATCCG
GTTGTATCACGTATATAATAGATGGTGATGGTAGACGGACGGATCAGTGTAGCTCGACCCCCCCC
CCCCACCCCATATAGACTCGATAGATAGGGCCCGGGTCGAGGAGCCCTATCGGGTCTGTCTGAAC
TATGGGTCAACCGCCCCTCCCGCCCAACTAGATCTATATTACATG
Found at i:275289 original size:18 final size:18
Alignment explanation
Indices: 275266--275363 Score: 140
Period size: 18 Copynumber: 5.9 Consensus size: 18
275256 GTGGGCCAAC
275266 CTCTATAGATATATCTCT
1 CTCTATAGATATATCTCT
275284 CTCTATAGATATATCTCT
1 CTCTATAGATATATCTCT
275302 CTCTATAGATATATCTCT
1 CTCTATAGATATATCTCT
275320 CTC--------TATCTCT
1 CTCTATAGATATATCTCT
275330 CTCTATAGATATATCTCT
1 CTCTATAGATATATCTCT
275348 CTCTATAGATATATCT
1 CTCTATAGATATATCT
275364 GAACTCTATA
Statistics
Matches: 72, Mismatches: 0, Indels: 16
0.82 0.00 0.18
Matches are distributed among these distances:
10 10 0.14
18 62 0.86
ACGTcount: A:0.27, C:0.23, G:0.05, T:0.45
Consensus pattern (18 bp):
CTCTATAGATATATCTCT
Left flanking sequence: Indices 274766 -- 275265
TCAATCATGCGATGGATCTGCCTAGAGAGATGGGCCCCTCCATATCTATATGCACAGCTCGGATT
CATGTTACGTACTTCGTGCCCTGAGAGAATGAATCTATATTGGCCCTATCTCTATATCTGGGGGG
CCCTATCCATTATCTGGGATTCCCAGGCCCTATCTATATAGAGGATGAGGAGGCCCTGAGAGAAT
GAATCTATATTGGGTTGGGGGGGCCCTATCTATTATCTGGGATTCCCAGGCCCTATCTATATAGA
GCCAGGAACAGTTCTCTATATGGGCCCACTCTCCAGTCCCCTATATCTCTATATGGCCCCAGCCT
GACTCCAGTGCCCCATAGGGCCCCAACCCCAGCCCCATATATAGAAATGCTAGGGCCTGGCCTAT
AGATCTATATCTGGCCCCCTATATAGATATGGGAACGGCCAGATAGATATAGGGCAATACAGATA
TCACTCTATTCCATTCTCTCTAGATGGAGTGGGGAGTGGGCCAAC
Right flanking sequence: Indices 275364 -- 275863
GAACTCTATATCTATATCTATATCTCTCTCTATATCTATATCTATATCTGGGGCTCCCCACCTGA
CCCGGGGAGAACCGCTGATAGAGAATTCTATCTATATGGAGAGGGAGAGGCGGTGCCATATCTCG
TCTCGTCTCGATACGGGATATTGGCTGAGACATGCTAACAACCAGTGTGGCCCATATATATAGAG
GCCCCTCCCCCCAGATCTAGAGATATGGCCATACTCTAGAATCTATAGGAGATCTCTATTCTATA
GGGCTGCATCAGATCTATATACGAGACTAGCCATATCTATAGTGTGGGGCTCCCCCCCAGACTCT
ACTCTATATGGCATTGGGCATTGGCCTAGATATAGGGAGTATGTATCTATATATAGGGGGGGCCA
GATCTAATCTCTATATAGGGGCATTGGCCCTATCTATATATAGGCCACCGCTGATTGGCATATAG
AGAGGACGCTGATTGGCAGTAGAATCAACATGATAGATAGAGAGG
Found at i:275335 original size:28 final size:28
Alignment explanation
Indices: 275295--275353 Score: 118
Period size: 28 Copynumber: 2.1 Consensus size: 28
275285 TCTATAGATA
275295 TATCTCTCTCTATAGATATATCTCTCTC
1 TATCTCTCTCTATAGATATATCTCTCTC
275323 TATCTCTCTCTATAGATATATCTCTCTC
1 TATCTCTCTCTATAGATATATCTCTCTC
275351 TAT
1 TAT
275354 AGATATATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.22, C:0.27, G:0.03, T:0.47
Consensus pattern (28 bp):
TATCTCTCTCTATAGATATATCTCTCTC
Left flanking sequence: Indices 274795 -- 275294
ATGGGCCCCTCCATATCTATATGCACAGCTCGGATTCATGTTACGTACTTCGTGCCCTGAGAGAA
TGAATCTATATTGGCCCTATCTCTATATCTGGGGGGCCCTATCCATTATCTGGGATTCCCAGGCC
CTATCTATATAGAGGATGAGGAGGCCCTGAGAGAATGAATCTATATTGGGTTGGGGGGGCCCTAT
CTATTATCTGGGATTCCCAGGCCCTATCTATATAGAGCCAGGAACAGTTCTCTATATGGGCCCAC
TCTCCAGTCCCCTATATCTCTATATGGCCCCAGCCTGACTCCAGTGCCCCATAGGGCCCCAACCC
CAGCCCCATATATAGAAATGCTAGGGCCTGGCCTATAGATCTATATCTGGCCCCCTATATAGATA
TGGGAACGGCCAGATAGATATAGGGCAATACAGATATCACTCTATTCCATTCTCTCTAGATGGAG
TGGGGAGTGGGCCAACCTCTATAGATATATCTCTCTCTATAGATA
Right flanking sequence: Indices 275354 -- 275853
AGATATATCTGAACTCTATATCTATATCTATATCTCTCTCTATATCTATATCTATATCTGGGGCT
CCCCACCTGACCCGGGGAGAACCGCTGATAGAGAATTCTATCTATATGGAGAGGGAGAGGCGGTG
CCATATCTCGTCTCGTCTCGATACGGGATATTGGCTGAGACATGCTAACAACCAGTGTGGCCCAT
ATATATAGAGGCCCCTCCCCCCAGATCTAGAGATATGGCCATACTCTAGAATCTATAGGAGATCT
CTATTCTATAGGGCTGCATCAGATCTATATACGAGACTAGCCATATCTATAGTGTGGGGCTCCCC
CCCAGACTCTACTCTATATGGCATTGGGCATTGGCCTAGATATAGGGAGTATGTATCTATATATA
GGGGGGGCCAGATCTAATCTCTATATAGGGGCATTGGCCCTATCTATATATAGGCCACCGCTGAT
TGGCATATAGAGAGGACGCTGATTGGCAGTAGAATCAACATGATA
Found at i:275377 original size:6 final size:6
Alignment explanation
Indices: 275368--275412 Score: 72
Period size: 6 Copynumber: 7.5 Consensus size: 6
275358 ATATCTGAAC
* *
275368 TCTATA TCTATA TCTATA TCTCTC TCTATA TCTATA TCTATA TCT
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCT
275413 GGGGCTCCCC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.27, C:0.22, G:0.00, T:0.51
Consensus pattern (6 bp):
TCTATA
Left flanking sequence: Indices 274868 -- 275367
TATTGGCCCTATCTCTATATCTGGGGGGCCCTATCCATTATCTGGGATTCCCAGGCCCTATCTAT
ATAGAGGATGAGGAGGCCCTGAGAGAATGAATCTATATTGGGTTGGGGGGGCCCTATCTATTATC
TGGGATTCCCAGGCCCTATCTATATAGAGCCAGGAACAGTTCTCTATATGGGCCCACTCTCCAGT
CCCCTATATCTCTATATGGCCCCAGCCTGACTCCAGTGCCCCATAGGGCCCCAACCCCAGCCCCA
TATATAGAAATGCTAGGGCCTGGCCTATAGATCTATATCTGGCCCCCTATATAGATATGGGAACG
GCCAGATAGATATAGGGCAATACAGATATCACTCTATTCCATTCTCTCTAGATGGAGTGGGGAGT
GGGCCAACCTCTATAGATATATCTCTCTCTATAGATATATCTCTCTCTATAGATATATCTCTCTC
TATCTCTCTCTATAGATATATCTCTCTCTATAGATATATCTGAAC
Right flanking sequence: Indices 275413 -- 275912
GGGGCTCCCCACCTGACCCGGGGAGAACCGCTGATAGAGAATTCTATCTATATGGAGAGGGAGAG
GCGGTGCCATATCTCGTCTCGTCTCGATACGGGATATTGGCTGAGACATGCTAACAACCAGTGTG
GCCCATATATATAGAGGCCCCTCCCCCCAGATCTAGAGATATGGCCATACTCTAGAATCTATAGG
AGATCTCTATTCTATAGGGCTGCATCAGATCTATATACGAGACTAGCCATATCTATAGTGTGGGG
CTCCCCCCCAGACTCTACTCTATATGGCATTGGGCATTGGCCTAGATATAGGGAGTATGTATCTA
TATATAGGGGGGGCCAGATCTAATCTCTATATAGGGGCATTGGCCCTATCTATATATAGGCCACC
GCTGATTGGCATATAGAGAGGACGCTGATTGGCAGTAGAATCAACATGATAGATAGAGAGGGCAT
ATAGAATAGAATATAGATATAGATATAGATATTGATATTTGGTTT
Found at i:275399 original size:24 final size:24
Alignment explanation
Indices: 275367--275412 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
275357 TATATCTGAA
275367 CTCTATATCTATATCTATATCTCT
1 CTCTATATCTATATCTATATCTCT
275391 CTCTATATCTATATCTATATCT
1 CTCTATATCTATATCTATATCT
275413 GGGGCTCCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.00, T:0.50
Consensus pattern (24 bp):
CTCTATATCTATATCTATATCTCT
Left flanking sequence: Indices 274867 -- 275366
ATATTGGCCCTATCTCTATATCTGGGGGGCCCTATCCATTATCTGGGATTCCCAGGCCCTATCTA
TATAGAGGATGAGGAGGCCCTGAGAGAATGAATCTATATTGGGTTGGGGGGGCCCTATCTATTAT
CTGGGATTCCCAGGCCCTATCTATATAGAGCCAGGAACAGTTCTCTATATGGGCCCACTCTCCAG
TCCCCTATATCTCTATATGGCCCCAGCCTGACTCCAGTGCCCCATAGGGCCCCAACCCCAGCCCC
ATATATAGAAATGCTAGGGCCTGGCCTATAGATCTATATCTGGCCCCCTATATAGATATGGGAAC
GGCCAGATAGATATAGGGCAATACAGATATCACTCTATTCCATTCTCTCTAGATGGAGTGGGGAG
TGGGCCAACCTCTATAGATATATCTCTCTCTATAGATATATCTCTCTCTATAGATATATCTCTCT
CTATCTCTCTCTATAGATATATCTCTCTCTATAGATATATCTGAA
Right flanking sequence: Indices 275413 -- 275912
GGGGCTCCCCACCTGACCCGGGGAGAACCGCTGATAGAGAATTCTATCTATATGGAGAGGGAGAG
GCGGTGCCATATCTCGTCTCGTCTCGATACGGGATATTGGCTGAGACATGCTAACAACCAGTGTG
GCCCATATATATAGAGGCCCCTCCCCCCAGATCTAGAGATATGGCCATACTCTAGAATCTATAGG
AGATCTCTATTCTATAGGGCTGCATCAGATCTATATACGAGACTAGCCATATCTATAGTGTGGGG
CTCCCCCCCAGACTCTACTCTATATGGCATTGGGCATTGGCCTAGATATAGGGAGTATGTATCTA
TATATAGGGGGGGCCAGATCTAATCTCTATATAGGGGCATTGGCCCTATCTATATATAGGCCACC
GCTGATTGGCATATAGAGAGGACGCTGATTGGCAGTAGAATCAACATGATAGATAGAGAGGGCAT
ATAGAATAGAATATAGATATAGATATAGATATTGATATTTGGTTT
Found at i:275906 original size:6 final size:6
Alignment explanation
Indices: 275866--275905 Score: 55
Period size: 6 Copynumber: 6.7 Consensus size: 6
275856 TAGAGAGGGC
*
275866 ATATAG A-ATAG AATATAG ATATAG ATATAG ATATTG ATAT
1 ATATAG ATATAG -ATATAG ATATAG ATATAG ATATAG ATAT
275906 TTGGTTTGGC
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
5 4 0.13
6 23 0.74
7 4 0.13
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (6 bp):
ATATAG
Left flanking sequence: Indices 275366 -- 275865
ACTCTATATCTATATCTATATCTCTCTCTATATCTATATCTATATCTGGGGCTCCCCACCTGACC
CGGGGAGAACCGCTGATAGAGAATTCTATCTATATGGAGAGGGAGAGGCGGTGCCATATCTCGTC
TCGTCTCGATACGGGATATTGGCTGAGACATGCTAACAACCAGTGTGGCCCATATATATAGAGGC
CCCTCCCCCCAGATCTAGAGATATGGCCATACTCTAGAATCTATAGGAGATCTCTATTCTATAGG
GCTGCATCAGATCTATATACGAGACTAGCCATATCTATAGTGTGGGGCTCCCCCCCAGACTCTAC
TCTATATGGCATTGGGCATTGGCCTAGATATAGGGAGTATGTATCTATATATAGGGGGGGCCAGA
TCTAATCTCTATATAGGGGCATTGGCCCTATCTATATATAGGCCACCGCTGATTGGCATATAGAG
AGGACGCTGATTGGCAGTAGAATCAACATGATAGATAGAGAGGGC
Right flanking sequence: Indices 275906 -- 276405
TTGGTTTGGCTAGCCCCCGGCGATCGAAACTCTCTGGCGGCCCTGCCCTATATAGAGATAGGAGA
TAGAGATTTGGCTAGGGCTAGCGGCCCCCCCTCTATAGAACTATATATATGGAGAGTTCCATATA
TCTATATATATAGATGGCCCTCTACTCTATATAGGCGATCGAAACTATCTGGCGGAATCTGCCAT
GCCAACGGGCCCTATATCTCTATCTGGCCCTATAATCTGCCAACGGCCCTATCTATCTGGCGGAA
TCTGCCATGCCAACGGTAGGGCCCTATATATCTATCTGGGCGGAGACCCTAATATTAGGGTAGGG
GGGGTAGGGCTCCTATCCTCTAGATAGGGGAGCCGAATCCGGTCCATCCCCTCTCTATAGAAAGG
GAAAGGGGCCAACCCCGAGAACTATAGACAGGATAGCAGGCCTCTATATTGTCTGGCTCCAACCC
GATGCCCATGTATACAGATAGGGCCAATGCCATAAGGTAAGGGCC
Found at i:276148 original size:19 final size:19
Alignment explanation
Indices: 276100--276152 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
276090 GAATCTGCCA
276100 TGCCAACGGGCCCTATATC
1 TGCCAACGGGCCCTATATC
* * *
276119 T-CTATCTGGCCCTATAATC
1 TGCCAACGGGCCCTAT-ATC
276138 TGCCAAC-GGCCCTAT
1 TGCCAACGGGCCCTAT
276153 CTATCTGGCG
Statistics
Matches: 27, Mismatches: 5, Indels: 4
0.75 0.14 0.11
Matches are distributed among these distances:
18 11 0.41
19 13 0.48
20 3 0.11
ACGTcount: A:0.21, C:0.36, G:0.17, T:0.26
Consensus pattern (19 bp):
TGCCAACGGGCCCTATATC
Left flanking sequence: Indices 275600 -- 276099
TCTATAGGAGATCTCTATTCTATAGGGCTGCATCAGATCTATATACGAGACTAGCCATATCTATA
GTGTGGGGCTCCCCCCCAGACTCTACTCTATATGGCATTGGGCATTGGCCTAGATATAGGGAGTA
TGTATCTATATATAGGGGGGGCCAGATCTAATCTCTATATAGGGGCATTGGCCCTATCTATATAT
AGGCCACCGCTGATTGGCATATAGAGAGGACGCTGATTGGCAGTAGAATCAACATGATAGATAGA
GAGGGCATATAGAATAGAATATAGATATAGATATAGATATTGATATTTGGTTTGGCTAGCCCCCG
GCGATCGAAACTCTCTGGCGGCCCTGCCCTATATAGAGATAGGAGATAGAGATTTGGCTAGGGCT
AGCGGCCCCCCCTCTATAGAACTATATATATGGAGAGTTCCATATATCTATATATATAGATGGCC
CTCTACTCTATATAGGCGATCGAAACTATCTGGCGGAATCTGCCA
Right flanking sequence: Indices 276153 -- 276652
CTATCTGGCGGAATCTGCCATGCCAACGGTAGGGCCCTATATATCTATCTGGGCGGAGACCCTAA
TATTAGGGTAGGGGGGGTAGGGCTCCTATCCTCTAGATAGGGGAGCCGAATCCGGTCCATCCCCT
CTCTATAGAAAGGGAAAGGGGCCAACCCCGAGAACTATAGACAGGATAGCAGGCCTCTATATTGT
CTGGCTCCAACCCGATGCCCATGTATACAGATAGGGCCAATGCCATAAGGTAAGGGCCTACTCTC
AGTCGACCCGACCTATATGGGCGAGCCCTATCTATATATAGGGAAGGGATGTGCCCCTATAGATA
TAGATATATGGCCGCCCTATCTATAGTTCTTCCATGGTCTAGTGCCCATTATCCATTGTCCAGCA
TATAGATATATAGGGCTATCTGGGGTGGGGCGATGTCCATTCCATTGTTGAGTGCCCGACTAGCC
GAATGTCTATTGTCAGTGCCCTATCCTATCTCACTACTTCGTATA
Found at i:277028 original size:5 final size:5
Alignment explanation
Indices: 277018--277067 Score: 100
Period size: 5 Copynumber: 10.0 Consensus size: 5
277008 TATGGGGGGC
277018 GGCTA GGCTA GGCTA GGCTA GGCTA GGCTA GGCTA GGCTA GGCTA GGCTA
1 GGCTA GGCTA GGCTA GGCTA GGCTA GGCTA GGCTA GGCTA GGCTA GGCTA
277068 TTAGGAGAGG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 45 1.00
ACGTcount: A:0.20, C:0.20, G:0.40, T:0.20
Consensus pattern (5 bp):
GGCTA
Left flanking sequence: Indices 276518 -- 277017
AGTGCCCATTATCCATTGTCCAGCATATAGATATATAGGGCTATCTGGGGTGGGGCGATGTCCAT
TCCATTGTTGAGTGCCCGACTAGCCGAATGTCTATTGTCAGTGCCCTATCCTATCTCACTACTTC
GTATATACCGATCCGGCCAGGTGGACCCTTCCAGTTCAGGGCATATATAGATATGGCCCGCCCTA
TCTATAGAGAATAGAAGTGCCTTCGGCGCCCTTCCAGTTCAGGGCGCCGAAGGCACTGCCCCTAC
CGTTGGCGGGGGAAGGCGCCCTCGGCCCCATATCTAGATAGGATAGGGGCCTAGCCCATCCCATA
GATAGAGAGTTGGGCGGCCTATCTAGACTCCCATATAGAGATAGGGGGGGCCCGGTTCTATTCTC
TTAGAAACGAGAGATAGAGATTAATAACTTACTTTGGCTTTGGGCACTTCACTTAAGATCGGCAT
ATATGCGTTCCTACCTATCTAGATGGAGGTATGGGTATGGGGGGC
Right flanking sequence: Indices 277068 -- 277567
TTAGGAGAGGTGGAGGGCGGCCCATACATCTATCTCTATATAGACTAGACTCCCTATCTATATAT
ATGCGGCACTCCCCCGCCCCTAGATATAGATAGAGGGGGGGCTACTATAGATAGGCCCCGACGGC
CTACTCTATATAGCCATACCTCTATATAGCCGGCCGGAGCTCGACCAACGGTATTGGCCCCAACC
TGACCAGCAAGTCCCCATCTAATCTCTATATAGGGCCAGGGCCCCCTATGCCCATTAATCTATTC
TATTCTCTGGGGGCCGTCGGCCCAGATAGATAGGCCCATATCTCCTCTATAGGGATAGGGGTCTC
CCATAGAGTTAGTTCTACCCTCGGCCTCCCATATCTATATAGCCCTATAGAGAATAGAGGAATAG
AATAGAGTAGATAATAGAGAACTGGCCTGGCCCTATCTATATTCTCTATGGGGGGCTGGCGCCTC
GCCTATATATCTATGATCATTCATGCCCATATCCATCGAAGTCTA
Found at i:278143 original size:4 final size:4
Alignment explanation
Indices: 278134--278206 Score: 85
Period size: 4 Copynumber: 18.2 Consensus size: 4
278124 TATCTCCTCT
* * * * *
278134 TCTA TCTA TCTA TCTGA ACTC TCTC TCTA T-TC TCCA TCTA TCTA TCTA
1 TCTA TCTA TCTA TCT-A TCTA TCTA TCTA TCTA TCTA TCTA TCTA TCTA
278182 TCTA TCTA TCTA TCTA TCTA TCTA T
1 TCTA TCTA TCTA TCTA TCTA TCTA T
278207 ATAGTCTAGA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
3 2 0.03
4 54 0.92
5 3 0.05
ACGTcount: A:0.22, C:0.29, G:0.01, T:0.48
Consensus pattern (4 bp):
TCTA
Left flanking sequence: Indices 277634 -- 278133
GAATGTAAGCCGCCCCGCCCCCTATATAGATAGGATAGTATCTATCTATGGTTGTTAGCCAAGCC
AGCCGCCCCCCATAGCATGCATAGATATATAGGCTAGGCCTACCGCCATATAGACCGACCGACCA
TATAGATAGATATAGAGGGATAGATAGACTCCCGAGCATGCATAACTAGGCTCTGCTCTATCTAT
CTGATATGGGCATGCTAGATAAGATAAGATACAGTAGAGGGGAGGGAGCCATATCTCTATCTCGG
CATGCATATCTATCTCTCTATATGGTATGGCGCCATATCTCTAGACTCTACTCTATAGGGCTTGG
CTGCATCAGATCTCTCTTACTCTATAGGGCAGTGTTCAGTCCGAGTGTTCAGTGTTGCTTTCTCC
TGACCGAAGATATGGCTCCTGCTGACCGTATAGGCTATCTCCTATCTCCTGCTGCTAGGGCATGC
TGCTATCTGGGCATGCTTACTCCTGCTGAGAAGGCTATCTCCTCT
Right flanking sequence: Indices 278207 -- 278706
ATAGTCTAGAGGTCTCTTCTCGTCGAGTCTACGAATGTCATCAACCGGTATTCAGAGCGGACAAA
GTCACAACGGGTATGAAGACCAACTAGTGGGAATCAGACTGACTGATGGTATGACGACTCACGAA
TGGTCTGAATCTTTTGGATTCCAACCCTTCGTCATCGGACTAACGAATGGTCATCCAACGGGTAT
ACAGACTAACCTAACTAATGGGAATCAGACTCACAACGGGTATACGGACTGGACTGACGAATGGG
AATCAGATTGACTGATGCGACCGGGCTGGTAGGAAGACTATAGACTGGTAGGATGCCTTACAACT
GGGAATCAGACTCACAACTGGTCCTCAGCTAGATATAGAGAGAGATATAGAGATAGATATAGATA
TAGAGAGAGATATAGACAGACCCCTCTATAGAGAACTGAAGGCCGATCTCTAGTCTCTCACTTCT
ATGCCGGGGCCGATCTATAGTCTATCACTTCTATGTCTCTATATA
Found at i:278440 original size:43 final size:43
Alignment explanation
Indices: 278392--278473 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
278382 AATGGTCATC
*
278392 CAACGGGTATACAGACT-AACCTAACTAATGGGAATCAGACTCA
1 CAACGGGTATACAGACTGAA-CTAACGAATGGGAATCAGACTCA
* * *
278435 CAACGGGTATACGGACTGGACTGACGAATGGGAATCAGA
1 CAACGGGTATACAGACTGAACTAACGAATGGGAATCAGA
278474 TTGACTGATG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
43 33 0.97
44 1 0.03
ACGTcount: A:0.37, C:0.21, G:0.26, T:0.17
Consensus pattern (43 bp):
CAACGGGTATACAGACTGAACTAACGAATGGGAATCAGACTCA
Left flanking sequence: Indices 277892 -- 278391
GGCATGCATATCTATCTCTCTATATGGTATGGCGCCATATCTCTAGACTCTACTCTATAGGGCTT
GGCTGCATCAGATCTCTCTTACTCTATAGGGCAGTGTTCAGTCCGAGTGTTCAGTGTTGCTTTCT
CCTGACCGAAGATATGGCTCCTGCTGACCGTATAGGCTATCTCCTATCTCCTGCTGCTAGGGCAT
GCTGCTATCTGGGCATGCTTACTCCTGCTGAGAAGGCTATCTCCTCTTCTATCTATCTATCTGAA
CTCTCTCTCTATTCTCCATCTATCTATCTATCTATCTATCTATCTATCTATCTATATAGTCTAGA
GGTCTCTTCTCGTCGAGTCTACGAATGTCATCAACCGGTATTCAGAGCGGACAAAGTCACAACGG
GTATGAAGACCAACTAGTGGGAATCAGACTGACTGATGGTATGACGACTCACGAATGGTCTGAAT
CTTTTGGATTCCAACCCTTCGTCATCGGACTAACGAATGGTCATC
Right flanking sequence: Indices 278474 -- 278973
TTGACTGATGCGACCGGGCTGGTAGGAAGACTATAGACTGGTAGGATGCCTTACAACTGGGAATC
AGACTCACAACTGGTCCTCAGCTAGATATAGAGAGAGATATAGAGATAGATATAGATATAGAGAG
AGATATAGACAGACCCCTCTATAGAGAACTGAAGGCCGATCTCTAGTCTCTCACTTCTATGCCGG
GGCCGATCTATAGTCTATCACTTCTATGTCTCTATATATCTGTGTCGAGAATACAAATCTATATA
GAGGGGCCCGAATAGATCTTTAGGTGATCAATTCATAGATATGAGGCTCCCTCACCTCTATTCTC
TATAGCTCAGCAGATATATAGAATAGGGAACTGAGAACTGGGCATATAGAATAGATCCCAGTCTA
GAGGGAGAGGGCCATATCTATATAGATCTAATGGCAGGGGGGGCCCCTCCCCTCCTCCCCTCTCT
ATAGATGGGCTTGAACCCCTATCCATCCCCCCCCCCTCTCTATTA
Found at i:278587 original size:18 final size:18
Alignment explanation
Indices: 278561--278602 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
278551 GGTCCTCAGC
*
278561 TAGATATAGAGAGAGATA
1 TAGAGATAGAGAGAGATA
* *
278579 TAGAGATAGATATAGATA
1 TAGAGATAGAGAGAGATA
278597 TAGAGA
1 TAGAGA
278603 GAGATATAGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.50, C:0.00, G:0.26, T:0.24
Consensus pattern (18 bp):
TAGAGATAGAGAGAGATA
Left flanking sequence: Indices 278061 -- 278560
TCTCCTATCTCCTGCTGCTAGGGCATGCTGCTATCTGGGCATGCTTACTCCTGCTGAGAAGGCTA
TCTCCTCTTCTATCTATCTATCTGAACTCTCTCTCTATTCTCCATCTATCTATCTATCTATCTAT
CTATCTATCTATCTATATAGTCTAGAGGTCTCTTCTCGTCGAGTCTACGAATGTCATCAACCGGT
ATTCAGAGCGGACAAAGTCACAACGGGTATGAAGACCAACTAGTGGGAATCAGACTGACTGATGG
TATGACGACTCACGAATGGTCTGAATCTTTTGGATTCCAACCCTTCGTCATCGGACTAACGAATG
GTCATCCAACGGGTATACAGACTAACCTAACTAATGGGAATCAGACTCACAACGGGTATACGGAC
TGGACTGACGAATGGGAATCAGATTGACTGATGCGACCGGGCTGGTAGGAAGACTATAGACTGGT
AGGATGCCTTACAACTGGGAATCAGACTCACAACTGGTCCTCAGC
Right flanking sequence: Indices 278603 -- 279102
GAGATATAGACAGACCCCTCTATAGAGAACTGAAGGCCGATCTCTAGTCTCTCACTTCTATGCCG
GGGCCGATCTATAGTCTATCACTTCTATGTCTCTATATATCTGTGTCGAGAATACAAATCTATAT
AGAGGGGCCCGAATAGATCTTTAGGTGATCAATTCATAGATATGAGGCTCCCTCACCTCTATTCT
CTATAGCTCAGCAGATATATAGAATAGGGAACTGAGAACTGGGCATATAGAATAGATCCCAGTCT
AGAGGGAGAGGGCCATATCTATATAGATCTAATGGCAGGGGGGGCCCCTCCCCTCCTCCCCTCTC
TATAGATGGGCTTGAACCCCTATCCATCCCCCCCCCCTCTCTATTATATCTCGGCTCCCATATAG
ATCTATAGAGGGGGGGGTTGGTTGTATCACTCCTTTGGATAGAGACTGGACAGAAGGATTCTTTA
GTACTCGTCCCTCTCCGGGCATCATCCAGGATTGTACTCGACCAG
Found at i:278599 original size:12 final size:12
Alignment explanation
Indices: 278561--278600 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
278551 GGTCCTCAGC
278561 TAGATATAGAGA
1 TAGATATAGAGA
*
278573 GAGATATAGAGA
1 TAGATATAGAGA
*
278585 TAGATATAGATA
1 TAGATATAGAGA
278597 TAGA
1 TAGA
278601 GAGAGATATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.50, C:0.00, G:0.25, T:0.25
Consensus pattern (12 bp):
TAGATATAGAGA
Left flanking sequence: Indices 278061 -- 278560
TCTCCTATCTCCTGCTGCTAGGGCATGCTGCTATCTGGGCATGCTTACTCCTGCTGAGAAGGCTA
TCTCCTCTTCTATCTATCTATCTGAACTCTCTCTCTATTCTCCATCTATCTATCTATCTATCTAT
CTATCTATCTATCTATATAGTCTAGAGGTCTCTTCTCGTCGAGTCTACGAATGTCATCAACCGGT
ATTCAGAGCGGACAAAGTCACAACGGGTATGAAGACCAACTAGTGGGAATCAGACTGACTGATGG
TATGACGACTCACGAATGGTCTGAATCTTTTGGATTCCAACCCTTCGTCATCGGACTAACGAATG
GTCATCCAACGGGTATACAGACTAACCTAACTAATGGGAATCAGACTCACAACGGGTATACGGAC
TGGACTGACGAATGGGAATCAGATTGACTGATGCGACCGGGCTGGTAGGAAGACTATAGACTGGT
AGGATGCCTTACAACTGGGAATCAGACTCACAACTGGTCCTCAGC
Right flanking sequence: Indices 278601 -- 279100
GAGAGATATAGACAGACCCCTCTATAGAGAACTGAAGGCCGATCTCTAGTCTCTCACTTCTATGC
CGGGGCCGATCTATAGTCTATCACTTCTATGTCTCTATATATCTGTGTCGAGAATACAAATCTAT
ATAGAGGGGCCCGAATAGATCTTTAGGTGATCAATTCATAGATATGAGGCTCCCTCACCTCTATT
CTCTATAGCTCAGCAGATATATAGAATAGGGAACTGAGAACTGGGCATATAGAATAGATCCCAGT
CTAGAGGGAGAGGGCCATATCTATATAGATCTAATGGCAGGGGGGGCCCCTCCCCTCCTCCCCTC
TCTATAGATGGGCTTGAACCCCTATCCATCCCCCCCCCCTCTCTATTATATCTCGGCTCCCATAT
AGATCTATAGAGGGGGGGGTTGGTTGTATCACTCCTTTGGATAGAGACTGGACAGAAGGATTCTT
TAGTACTCGTCCCTCTCCGGGCATCATCCAGGATTGTACTCGACC
Found at i:278607 original size:18 final size:18
Alignment explanation
Indices: 278574--278612 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
278564 ATATAGAGAG
*
278574 AGATATAGAGATAGATAT
1 AGATATAGAGAGAGATAT
278592 AGATATAGAGAGAGATAT
1 AGATATAGAGAGAGATAT
278610 AGA
1 AGA
278613 CAGACCCCTC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.51, C:0.00, G:0.26, T:0.23
Consensus pattern (18 bp):
AGATATAGAGAGAGATAT
Left flanking sequence: Indices 278074 -- 278573
GCTGCTAGGGCATGCTGCTATCTGGGCATGCTTACTCCTGCTGAGAAGGCTATCTCCTCTTCTAT
CTATCTATCTGAACTCTCTCTCTATTCTCCATCTATCTATCTATCTATCTATCTATCTATCTATC
TATATAGTCTAGAGGTCTCTTCTCGTCGAGTCTACGAATGTCATCAACCGGTATTCAGAGCGGAC
AAAGTCACAACGGGTATGAAGACCAACTAGTGGGAATCAGACTGACTGATGGTATGACGACTCAC
GAATGGTCTGAATCTTTTGGATTCCAACCCTTCGTCATCGGACTAACGAATGGTCATCCAACGGG
TATACAGACTAACCTAACTAATGGGAATCAGACTCACAACGGGTATACGGACTGGACTGACGAAT
GGGAATCAGATTGACTGATGCGACCGGGCTGGTAGGAAGACTATAGACTGGTAGGATGCCTTACA
ACTGGGAATCAGACTCACAACTGGTCCTCAGCTAGATATAGAGAG
Right flanking sequence: Indices 278613 -- 279112
CAGACCCCTCTATAGAGAACTGAAGGCCGATCTCTAGTCTCTCACTTCTATGCCGGGGCCGATCT
ATAGTCTATCACTTCTATGTCTCTATATATCTGTGTCGAGAATACAAATCTATATAGAGGGGCCC
GAATAGATCTTTAGGTGATCAATTCATAGATATGAGGCTCCCTCACCTCTATTCTCTATAGCTCA
GCAGATATATAGAATAGGGAACTGAGAACTGGGCATATAGAATAGATCCCAGTCTAGAGGGAGAG
GGCCATATCTATATAGATCTAATGGCAGGGGGGGCCCCTCCCCTCCTCCCCTCTCTATAGATGGG
CTTGAACCCCTATCCATCCCCCCCCCCTCTCTATTATATCTCGGCTCCCATATAGATCTATAGAG
GGGGGGGTTGGTTGTATCACTCCTTTGGATAGAGACTGGACAGAAGGATTCTTTAGTACTCGTCC
CTCTCCGGGCATCATCCAGGATTGTACTCGACCAGAATCTTACCT
Found at i:281959 original size:98 final size:99
Alignment explanation
Indices: 281770--281960 Score: 348
Period size: 98 Copynumber: 1.9 Consensus size: 99
281760 GTTCCTGCTC
281770 CTGTATAGAGCTGGGGGAGCTCGATTCTGTATAGAGGGGTTCTGATATGGGTATGGATGGGATAG
1 CTGTATAGAGCTGGGGGAGCTCGATTCTGTATAGAGGGGTTCTGA-ATGGGTATGGATGGGATAG
281835 ATAGAATAGATATGGCCGATACTGTATACTGTATA
65 ATAGAATAGATATGGCCGATACTGTATACTGTATA
* *
281870 CTGTATAGAGCTGGGGGAGCTCGATTCTGTCTAGAGGGGTTCTG-ATGGGTATGGGTGGGATAGA
1 CTGTATAGAGCTGGGGGAGCTCGATTCTGTATAGAGGGGTTCTGAATGGGTATGGATGGGATAGA
281934 TAGAATAGATATGGCCGATACTGTATA
66 TAGAATAGATATGGCCGATACTGTATA
281961 GAGGTTGGGG
Statistics
Matches: 89, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
98 46 0.52
100 43 0.48
ACGTcount: A:0.26, C:0.10, G:0.35, T:0.29
Consensus pattern (99 bp):
CTGTATAGAGCTGGGGGAGCTCGATTCTGTATAGAGGGGTTCTGAATGGGTATGGATGGGATAGA
TAGAATAGATATGGCCGATACTGTATACTGTATA
Left flanking sequence: Indices 281270 -- 281769
GAATTGTAGATCTTTATTGGCTGGGCGCTACCGATACTAGGGGGTAGGGCCGGATCTATATATAG
GTTCCTATCTTCCTATCCCTATCTATATAGGGTTGGGGGTTGGGCGGGGGCACTAGATAGAATAG
AGCTGGGTGGGACCGATCCTGTATAGAGGGTAGACGCTCCCCCATATCCCATAGAGTTTGATAGT
GATAGAGGGGGTCCCGTCCTTAACTTCTTATAGCTGGGTGGGCACTAGAGGGGCCCTTCATAGAA
ACTACCGGCCTCATCCCCATATGGAGCTGGGAGCTGGGTGTACCGATCCTGTATATAGGGTAAGG
GGGGTAAGGGTCCTGCTCGTCCTCGGAGTTGGGAGTTGGGTGAGCACTATCCTGTATAGAGGGGC
TCGTCCTCGTCTATAGAGAGCTGGGAGCTGGGTGTACCGATTCTGTATATGGCTGCTCGTTTATA
TGTAGCTGGGTGTCTTGTATAGGGTTAGGGTGTAGGTTCCTGCTC
Right flanking sequence: Indices 281961 -- 282460
GAGGTTGGGGTTCCCGCTTTTACTTTTCTATAGAGGGGGGTCTGTATAGAGCTGGGTATACCAAT
CCCGTATCTGTATTCTGTATAGAGCTGGGTATACCAATCCTGTATCTGTATATAGGTGCTCGTAT
ATATGTAGCTGGGTGTCTTGTATAGGGTGTAGGTCCCCGTTCCTGAAAGAAAATATATGGCTGTG
CTGTGGTAGGTCCCTATCTATATATGGGGGCCTACTGGACCCATTTGCATTGGTTGAGTATAGAT
AGATGGTGCTTTGGTTGAGTATAGAGAGATGGCCCCGAACGTTCAGATAGGGATATGTCGATTGC
CAGGTAGATAGTTCAGGGTCAATCGACCTCTCCCAACTATAGATAGGGGGGGGGGCACTCGTCTC
TATATCTATCTGGAGGACGAGGGGTGCTCTCCCTCTCTATCTAACTGCCACTCGACTGCCCAGAT
CTGCCAGATACTCTATATGGGGGGGCCAACCCAACCAACTCTATA
Found at i:282052 original size:38 final size:38
Alignment explanation
Indices: 282001--282076 Score: 143
Period size: 38 Copynumber: 2.0 Consensus size: 38
281991 TAGAGGGGGG
282001 TCTGTATAGAGCTGGGTATACCAATCCCGTATCTGTAT
1 TCTGTATAGAGCTGGGTATACCAATCCCGTATCTGTAT
*
282039 TCTGTATAGAGCTGGGTATACCAATCCTGTATCTGTAT
1 TCTGTATAGAGCTGGGTATACCAATCCCGTATCTGTAT
282077 ATAGGTGCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.36
Consensus pattern (38 bp):
TCTGTATAGAGCTGGGTATACCAATCCCGTATCTGTAT
Left flanking sequence: Indices 281501 -- 282000
GGTGGGCACTAGAGGGGCCCTTCATAGAAACTACCGGCCTCATCCCCATATGGAGCTGGGAGCTG
GGTGTACCGATCCTGTATATAGGGTAAGGGGGGTAAGGGTCCTGCTCGTCCTCGGAGTTGGGAGT
TGGGTGAGCACTATCCTGTATAGAGGGGCTCGTCCTCGTCTATAGAGAGCTGGGAGCTGGGTGTA
CCGATTCTGTATATGGCTGCTCGTTTATATGTAGCTGGGTGTCTTGTATAGGGTTAGGGTGTAGG
TTCCTGCTCCTGTATAGAGCTGGGGGAGCTCGATTCTGTATAGAGGGGTTCTGATATGGGTATGG
ATGGGATAGATAGAATAGATATGGCCGATACTGTATACTGTATACTGTATAGAGCTGGGGGAGCT
CGATTCTGTCTAGAGGGGTTCTGATGGGTATGGGTGGGATAGATAGAATAGATATGGCCGATACT
GTATAGAGGTTGGGGTTCCCGCTTTTACTTTTCTATAGAGGGGGG
Right flanking sequence: Indices 282077 -- 282576
ATAGGTGCTCGTATATATGTAGCTGGGTGTCTTGTATAGGGTGTAGGTCCCCGTTCCTGAAAGAA
AATATATGGCTGTGCTGTGGTAGGTCCCTATCTATATATGGGGGCCTACTGGACCCATTTGCATT
GGTTGAGTATAGATAGATGGTGCTTTGGTTGAGTATAGAGAGATGGCCCCGAACGTTCAGATAGG
GATATGTCGATTGCCAGGTAGATAGTTCAGGGTCAATCGACCTCTCCCAACTATAGATAGGGGGG
GGGGCACTCGTCTCTATATCTATCTGGAGGACGAGGGGTGCTCTCCCTCTCTATCTAACTGCCAC
TCGACTGCCCAGATCTGCCAGATACTCTATATGGGGGGGCCAACCCAACCAACTCTATATAGCCA
GCCATCTCTCTATCTGGTTGGGGCCATCTATCCATACAGTCGAGGAGGGGGAGAAGGGAGAGGCC
CCCTATCTATCTATGGGTTGGGTGACCGTATGATCTACATGATTG
Found at i:282686 original size:4 final size:4
Alignment explanation
Indices: 282673--282867 Score: 120
Period size: 4 Copynumber: 48.5 Consensus size: 4
282663 AGAATATATA
* * * * * * *
282673 TATC TCTC TATC TATC TCTC TCTC TATA TCTC TCTC TATC TATC TCTC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
* * * * * * *
282721 TATC TATC TCTC TATA TCTC TCTC TATC TATC TATC TCTC TCTC TATA
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
* * * * * * * * * * * *
282769 TCTC TCTC AGATA TATA TCTC TATC TCTC TCTC TCTC TATA TCTC TCTC
1 TATC TATC -TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
* * *
282818 TATC TATC TATC TCTC TCTC TATC TATC TATC TATC TCTC TATC TATC
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC TATC
282866 TA
1 TA
282868 GATCTCCTGG
Statistics
Matches: 152, Mismatches: 38, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
4 151 0.99
5 1 0.01
ACGTcount: A:0.17, C:0.33, G:0.01, T:0.49
Consensus pattern (4 bp):
TATC
Left flanking sequence: Indices 282173 -- 282672
CTATATATGGGGGCCTACTGGACCCATTTGCATTGGTTGAGTATAGATAGATGGTGCTTTGGTTG
AGTATAGAGAGATGGCCCCGAACGTTCAGATAGGGATATGTCGATTGCCAGGTAGATAGTTCAGG
GTCAATCGACCTCTCCCAACTATAGATAGGGGGGGGGGCACTCGTCTCTATATCTATCTGGAGGA
CGAGGGGTGCTCTCCCTCTCTATCTAACTGCCACTCGACTGCCCAGATCTGCCAGATACTCTATA
TGGGGGGGCCAACCCAACCAACTCTATATAGCCAGCCATCTCTCTATCTGGTTGGGGCCATCTAT
CCATACAGTCGAGGAGGGGGAGAAGGGAGAGGCCCCCTATCTATCTATGGGTTGGGTGACCGTAT
GATCTACATGATTGTCATGCGATCAAGCTCTTCTTCGGAGTGAGTGATTCATGTTACAGTACAGT
TCGGAGTGAGTGATTCATGTTACAAGATAGATGGTAGAATATATA
Right flanking sequence: Indices 282868 -- 283367
GATCTCCTGGTTGATAGAGTAGGAATGTTCCCCCCGCCCTGAACTATCTATCTGGGGGAGTTGAG
AATGTAGGGAGGGATTACCCCTTGCTATGCTATGGGGGAATCCCCCCGTGTTTGGAGGGGGAGAG
GGGGGTGAAGCCGATGTGGGGAACTGGATCGGCTGATCCCAGATAGATAGTTCAGGCACTGGGTC
CATAAGATATAGAGAGAGGGGGGGGCCCTCGGAATGCTTGAATGCTTGCCAGATATCTCTATTCG
GGCTACTGCATATCGGGGGTATGGGGGGGGTTGGGGGGGTTGGGGCCCATAGTTCAGATTAGAGA
GGGAGTTGGGCGGGCTACTGCTAGAGTTGGGCGGGCTACTGCATACCGGGGGGATGGGCTACTGG
TTATGGGAATAAAGACTTGCCTTGCCATATCGGAGGGGGCATTGGGAGTTGGGGATGGGCTACTG
GCCATATCTCTCTCTAGGGGTATGGGCTACTGGATTGGGGTATGG
Found at i:282690 original size:12 final size:12
Alignment explanation
Indices: 282673--282867 Score: 164
Period size: 12 Copynumber: 16.5 Consensus size: 12
282663 AGAATATATA
* *
282673 TATCTCTCTATC
1 TATCTATCTCTC
*
282685 TATCTCTCTCTC
1 TATCTATCTCTC
* *
282697 TATATCTCTCTC
1 TATCTATCTCTC
282709 TATCTATCTCTC
1 TATCTATCTCTC
282721 TATCTATCTCTC
1 TATCTATCTCTC
282733 TA--TATCTCTC
1 TATCTATCTCTC
*
282743 --TCTATCTATC
1 TATCTATCTCTC
*
282753 TATCTCTCTCTC
1 TATCTATCTCTC
* *
282765 TATATCTCTCTC
1 TATCTATCTCTC
* * *
282777 AGATATATATCTC
1 -TATCTATCTCTC
*
282790 TATCTCTCTCTC
1 TATCTATCTCTC
* *
282802 TCTCTATATCTC
1 TATCTATCTCTC
* *
282814 TCTCTATCTATC
1 TATCTATCTCTC
*
282826 TATCTCTCTCTC
1 TATCTATCTCTC
*
282838 TATCTATCTATC
1 TATCTATCTCTC
* *
282850 TATCTCTCTATC
1 TATCTATCTCTC
282862 TATCTA
1 TATCTA
282868 GATCTCCTGG
Statistics
Matches: 151, Mismatches: 27, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
10 15 0.10
12 127 0.84
13 9 0.06
ACGTcount: A:0.17, C:0.33, G:0.01, T:0.49
Consensus pattern (12 bp):
TATCTATCTCTC
Left flanking sequence: Indices 282173 -- 282672
CTATATATGGGGGCCTACTGGACCCATTTGCATTGGTTGAGTATAGATAGATGGTGCTTTGGTTG
AGTATAGAGAGATGGCCCCGAACGTTCAGATAGGGATATGTCGATTGCCAGGTAGATAGTTCAGG
GTCAATCGACCTCTCCCAACTATAGATAGGGGGGGGGGCACTCGTCTCTATATCTATCTGGAGGA
CGAGGGGTGCTCTCCCTCTCTATCTAACTGCCACTCGACTGCCCAGATCTGCCAGATACTCTATA
TGGGGGGGCCAACCCAACCAACTCTATATAGCCAGCCATCTCTCTATCTGGTTGGGGCCATCTAT
CCATACAGTCGAGGAGGGGGAGAAGGGAGAGGCCCCCTATCTATCTATGGGTTGGGTGACCGTAT
GATCTACATGATTGTCATGCGATCAAGCTCTTCTTCGGAGTGAGTGATTCATGTTACAGTACAGT
TCGGAGTGAGTGATTCATGTTACAAGATAGATGGTAGAATATATA
Right flanking sequence: Indices 282868 -- 283367
GATCTCCTGGTTGATAGAGTAGGAATGTTCCCCCCGCCCTGAACTATCTATCTGGGGGAGTTGAG
AATGTAGGGAGGGATTACCCCTTGCTATGCTATGGGGGAATCCCCCCGTGTTTGGAGGGGGAGAG
GGGGGTGAAGCCGATGTGGGGAACTGGATCGGCTGATCCCAGATAGATAGTTCAGGCACTGGGTC
CATAAGATATAGAGAGAGGGGGGGGCCCTCGGAATGCTTGAATGCTTGCCAGATATCTCTATTCG
GGCTACTGCATATCGGGGGTATGGGGGGGGTTGGGGGGGTTGGGGCCCATAGTTCAGATTAGAGA
GGGAGTTGGGCGGGCTACTGCTAGAGTTGGGCGGGCTACTGCATACCGGGGGGATGGGCTACTGG
TTATGGGAATAAAGACTTGCCTTGCCATATCGGAGGGGGCATTGGGAGTTGGGGATGGGCTACTG
GCCATATCTCTCTCTAGGGGTATGGGCTACTGGATTGGGGTATGG
Found at i:282696 original size:16 final size:16
Alignment explanation
Indices: 282675--282862 Score: 157
Period size: 16 Copynumber: 11.9 Consensus size: 16
282665 AATATATATA
282675 TCTCTCTATCTATCTC
1 TCTCTCTATCTATCTC
* *
282691 TCTCTCTATATCTCTC
1 TCTCTCTATCTATCTC
* * *
282707 TCTATCTATCTCTCTA
1 TCTCTCTATCTATCTC
* * *
282723 TCTATCTCTCTATATC
1 TCTCTCTATCTATCTC
*
282739 TCTCTCTATCTATCTA
1 TCTCTCTATCTATCTC
* *
282755 TCTCTCTCTCTATATC
1 TCTCTCTATCTATCTC
* * *
282771 TCTCTC-A--GATATA
1 TCTCTCTATCTATCTC
* *
282784 TATCTCTATCTCTCTC
1 TCTCTCTATCTATCTC
* *
282800 TCTCTCTATATCTCTC
1 TCTCTCTATCTATCTC
*
282816 TCTATCTATCTATCTC
1 TCTCTCTATCTATCTC
*
282832 TCTCTCTATCTATCTA
1 TCTCTCTATCTATCTC
* *
282848 TCTATCTCTCTATCT
1 TCTCTCTATCTATCT
282863 ATCTAGATCT
Statistics
Matches: 136, Mismatches: 33, Indels: 6
0.78 0.19 0.03
Matches are distributed among these distances:
13 9 0.07
14 1 0.01
16 126 0.93
ACGTcount: A:0.16, C:0.34, G:0.01, T:0.49
Consensus pattern (16 bp):
TCTCTCTATCTATCTC
Left flanking sequence: Indices 282175 -- 282674
ATATATGGGGGCCTACTGGACCCATTTGCATTGGTTGAGTATAGATAGATGGTGCTTTGGTTGAG
TATAGAGAGATGGCCCCGAACGTTCAGATAGGGATATGTCGATTGCCAGGTAGATAGTTCAGGGT
CAATCGACCTCTCCCAACTATAGATAGGGGGGGGGGCACTCGTCTCTATATCTATCTGGAGGACG
AGGGGTGCTCTCCCTCTCTATCTAACTGCCACTCGACTGCCCAGATCTGCCAGATACTCTATATG
GGGGGGCCAACCCAACCAACTCTATATAGCCAGCCATCTCTCTATCTGGTTGGGGCCATCTATCC
ATACAGTCGAGGAGGGGGAGAAGGGAGAGGCCCCCTATCTATCTATGGGTTGGGTGACCGTATGA
TCTACATGATTGTCATGCGATCAAGCTCTTCTTCGGAGTGAGTGATTCATGTTACAGTACAGTTC
GGAGTGAGTGATTCATGTTACAAGATAGATGGTAGAATATATATA
Right flanking sequence: Indices 282863 -- 283362
ATCTAGATCTCCTGGTTGATAGAGTAGGAATGTTCCCCCCGCCCTGAACTATCTATCTGGGGGAG
TTGAGAATGTAGGGAGGGATTACCCCTTGCTATGCTATGGGGGAATCCCCCCGTGTTTGGAGGGG
GAGAGGGGGGTGAAGCCGATGTGGGGAACTGGATCGGCTGATCCCAGATAGATAGTTCAGGCACT
GGGTCCATAAGATATAGAGAGAGGGGGGGGCCCTCGGAATGCTTGAATGCTTGCCAGATATCTCT
ATTCGGGCTACTGCATATCGGGGGTATGGGGGGGGTTGGGGGGGTTGGGGCCCATAGTTCAGATT
AGAGAGGGAGTTGGGCGGGCTACTGCTAGAGTTGGGCGGGCTACTGCATACCGGGGGGATGGGCT
ACTGGTTATGGGAATAAAGACTTGCCTTGCCATATCGGAGGGGGCATTGGGAGTTGGGGATGGGC
TACTGGCCATATCTCTCTCTAGGGGTATGGGCTACTGGATTGGGG
Found at i:282873 original size:16 final size:16
Alignment explanation
Indices: 282840--282873 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
282830 TCTCTCTCTA
**
282840 TCTATCTATCTATCTC
1 TCTATCTATCTAGATC
282856 TCTATCTATCTAGATC
1 TCTATCTATCTAGATC
282872 TC
1 TC
282874 CTGGTTGATA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.21, C:0.29, G:0.03, T:0.47
Consensus pattern (16 bp):
TCTATCTATCTAGATC
Left flanking sequence: Indices 282340 -- 282839
GCACTCGTCTCTATATCTATCTGGAGGACGAGGGGTGCTCTCCCTCTCTATCTAACTGCCACTCG
ACTGCCCAGATCTGCCAGATACTCTATATGGGGGGGCCAACCCAACCAACTCTATATAGCCAGCC
ATCTCTCTATCTGGTTGGGGCCATCTATCCATACAGTCGAGGAGGGGGAGAAGGGAGAGGCCCCC
TATCTATCTATGGGTTGGGTGACCGTATGATCTACATGATTGTCATGCGATCAAGCTCTTCTTCG
GAGTGAGTGATTCATGTTACAGTACAGTTCGGAGTGAGTGATTCATGTTACAAGATAGATGGTAG
AATATATATATCTCTCTATCTATCTCTCTCTCTATATCTCTCTCTATCTATCTCTCTATCTATCT
CTCTATATCTCTCTCTATCTATCTATCTCTCTCTCTATATCTCTCTCAGATATATATCTCTATCT
CTCTCTCTCTCTATATCTCTCTCTATCTATCTATCTCTCTCTCTA
Right flanking sequence: Indices 282874 -- 283373
CTGGTTGATAGAGTAGGAATGTTCCCCCCGCCCTGAACTATCTATCTGGGGGAGTTGAGAATGTA
GGGAGGGATTACCCCTTGCTATGCTATGGGGGAATCCCCCCGTGTTTGGAGGGGGAGAGGGGGGT
GAAGCCGATGTGGGGAACTGGATCGGCTGATCCCAGATAGATAGTTCAGGCACTGGGTCCATAAG
ATATAGAGAGAGGGGGGGGCCCTCGGAATGCTTGAATGCTTGCCAGATATCTCTATTCGGGCTAC
TGCATATCGGGGGTATGGGGGGGGTTGGGGGGGTTGGGGCCCATAGTTCAGATTAGAGAGGGAGT
TGGGCGGGCTACTGCTAGAGTTGGGCGGGCTACTGCATACCGGGGGGATGGGCTACTGGTTATGG
GAATAAAGACTTGCCTTGCCATATCGGAGGGGGCATTGGGAGTTGGGGATGGGCTACTGGCCATA
TCTCTCTCTAGGGGTATGGGCTACTGGATTGGGGTATGGGCCCGA
Found at i:283221 original size:21 final size:21
Alignment explanation
Indices: 283195--283234 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
283185 ATTAGAGAGG
283195 GAGTTGGGCGGGCTACTGCTA
1 GAGTTGGGCGGGCTACTGCTA
283216 GAGTTGGGCGGGCTACTGC
1 GAGTTGGGCGGGCTACTGC
283235 ATACCGGGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.12, C:0.20, G:0.45, T:0.23
Consensus pattern (21 bp):
GAGTTGGGCGGGCTACTGCTA
Left flanking sequence: Indices 282695 -- 283194
TCTATATCTCTCTCTATCTATCTCTCTATCTATCTCTCTATATCTCTCTCTATCTATCTATCTCT
CTCTCTATATCTCTCTCAGATATATATCTCTATCTCTCTCTCTCTCTATATCTCTCTCTATCTAT
CTATCTCTCTCTCTATCTATCTATCTATCTCTCTATCTATCTAGATCTCCTGGTTGATAGAGTAG
GAATGTTCCCCCCGCCCTGAACTATCTATCTGGGGGAGTTGAGAATGTAGGGAGGGATTACCCCT
TGCTATGCTATGGGGGAATCCCCCCGTGTTTGGAGGGGGAGAGGGGGGTGAAGCCGATGTGGGGA
ACTGGATCGGCTGATCCCAGATAGATAGTTCAGGCACTGGGTCCATAAGATATAGAGAGAGGGGG
GGGCCCTCGGAATGCTTGAATGCTTGCCAGATATCTCTATTCGGGCTACTGCATATCGGGGGTAT
GGGGGGGGTTGGGGGGGTTGGGGCCCATAGTTCAGATTAGAGAGG
Right flanking sequence: Indices 283235 -- 283734
ATACCGGGGGGATGGGCTACTGGTTATGGGAATAAAGACTTGCCTTGCCATATCGGAGGGGGCAT
TGGGAGTTGGGGATGGGCTACTGGCCATATCTCTCTCTAGGGGTATGGGCTACTGGATTGGGGTA
TGGGCCCGATGGGCACTTGCCATATAGAACTAGGGGGGCCCTCCCCTCTATATAGATGAGATGGG
CACTTGATAGATGAGATAGGCACTTGCCATATATCTATATAGAGGGGGCATTGGGAGTTGGGGAT
GGGCCCCCCACCCCATAGTGCCGTAGTTATAGGGACTCGCCATAGAGAGAGGGGGCCCCGAACTA
GTTATAGGGACTATAGAGAGAGAGGGGGGCATACATACTTTGATTCGGGCTTCAACACTCGGGCA
TCAGGGCATCAAGACTTGGCTCTCTATAGAGAGGGGGGCATCGAGACTCGGCACTATATAGAGAG
GGGGGCATCAACACTCTCGACTGCAGGTTGGGGTCTGGGCATCAC
Found at i:283441 original size:20 final size:20
Alignment explanation
Indices: 283416--283455 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
283406 TCCCCTCTAT
*
283416 ATAGATGAGATGGGCACTTG
1 ATAGATGAGATAGGCACTTG
283436 ATAGATGAGATAGGCACTTG
1 ATAGATGAGATAGGCACTTG
283456 CCATATATCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.33, C:0.10, G:0.33, T:0.25
Consensus pattern (20 bp):
ATAGATGAGATAGGCACTTG
Left flanking sequence: Indices 282916 -- 283415
TATCTGGGGGAGTTGAGAATGTAGGGAGGGATTACCCCTTGCTATGCTATGGGGGAATCCCCCCG
TGTTTGGAGGGGGAGAGGGGGGTGAAGCCGATGTGGGGAACTGGATCGGCTGATCCCAGATAGAT
AGTTCAGGCACTGGGTCCATAAGATATAGAGAGAGGGGGGGGCCCTCGGAATGCTTGAATGCTTG
CCAGATATCTCTATTCGGGCTACTGCATATCGGGGGTATGGGGGGGGTTGGGGGGGTTGGGGCCC
ATAGTTCAGATTAGAGAGGGAGTTGGGCGGGCTACTGCTAGAGTTGGGCGGGCTACTGCATACCG
GGGGGATGGGCTACTGGTTATGGGAATAAAGACTTGCCTTGCCATATCGGAGGGGGCATTGGGAG
TTGGGGATGGGCTACTGGCCATATCTCTCTCTAGGGGTATGGGCTACTGGATTGGGGTATGGGCC
CGATGGGCACTTGCCATATAGAACTAGGGGGGCCCTCCCCTCTAT
Right flanking sequence: Indices 283456 -- 283955
CCATATATCTATATAGAGGGGGCATTGGGAGTTGGGGATGGGCCCCCCACCCCATAGTGCCGTAG
TTATAGGGACTCGCCATAGAGAGAGGGGGCCCCGAACTAGTTATAGGGACTATAGAGAGAGAGGG
GGGCATACATACTTTGATTCGGGCTTCAACACTCGGGCATCAGGGCATCAAGACTTGGCTCTCTA
TAGAGAGGGGGGCATCGAGACTCGGCACTATATAGAGAGGGGGGCATCAACACTCTCGACTGCAG
GTTGGGGTCTGGGCATCACGACTTGGGGATGGGCCATAGAGATCTATAGGGCACAGGGAACCACC
CCCATAGATAGATAGATAGATAGAGGGCAGTCTGGTCCCATAGAAGATATAGGGCGGATAGAGTT
TTTTCCCGGCTCCCTCCTCCACCGCCCAACTATCTGCCCCTAGATCTCCCTACTCTTCTATAGTG
GTTTGTTTCCAGCGCCCCTCTAGGACAGATCCTAGCTACTGGGCC
Found at i:283665 original size:32 final size:32
Alignment explanation
Indices: 283628--283705 Score: 111
Period size: 32 Copynumber: 2.4 Consensus size: 32
283618 TCGGGCATCA
* * *
283628 GGGCATCAAGACTTGGCTCTCTATAGAGAGGG
1 GGGCATCAAGACTCGGCACTATATAGAGAGGG
*
283660 GGGCATCGAGACTCGGCACTATATAGAGAGGG
1 GGGCATCAAGACTCGGCACTATATAGAGAGGG
*
283692 GGGCATCAACACTC
1 GGGCATCAAGACTC
283706 TCGACTGCAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 40 1.00
ACGTcount: A:0.27, C:0.22, G:0.33, T:0.18
Consensus pattern (32 bp):
GGGCATCAAGACTCGGCACTATATAGAGAGGG
Left flanking sequence: Indices 283128 -- 283627
GGCTACTGCATATCGGGGGTATGGGGGGGGTTGGGGGGGTTGGGGCCCATAGTTCAGATTAGAGA
GGGAGTTGGGCGGGCTACTGCTAGAGTTGGGCGGGCTACTGCATACCGGGGGGATGGGCTACTGG
TTATGGGAATAAAGACTTGCCTTGCCATATCGGAGGGGGCATTGGGAGTTGGGGATGGGCTACTG
GCCATATCTCTCTCTAGGGGTATGGGCTACTGGATTGGGGTATGGGCCCGATGGGCACTTGCCAT
ATAGAACTAGGGGGGCCCTCCCCTCTATATAGATGAGATGGGCACTTGATAGATGAGATAGGCAC
TTGCCATATATCTATATAGAGGGGGCATTGGGAGTTGGGGATGGGCCCCCCACCCCATAGTGCCG
TAGTTATAGGGACTCGCCATAGAGAGAGGGGGCCCCGAACTAGTTATAGGGACTATAGAGAGAGA
GGGGGGCATACATACTTTGATTCGGGCTTCAACACTCGGGCATCA
Right flanking sequence: Indices 283706 -- 284205
TCGACTGCAGGTTGGGGTCTGGGCATCACGACTTGGGGATGGGCCATAGAGATCTATAGGGCACA
GGGAACCACCCCCATAGATAGATAGATAGATAGAGGGCAGTCTGGTCCCATAGAAGATATAGGGC
GGATAGAGTTTTTTCCCGGCTCCCTCCTCCACCGCCCAACTATCTGCCCCTAGATCTCCCTACTC
TTCTATAGTGGTTTGTTTCCAGCGCCCCTCTAGGACAGATCCTAGCTACTGGGCCCGGGAAGGAT
GCAGGGAATGCAGGTGGTATGGCCTTTAGTTGGTTTCCCCGCTCCTCCGCAACTAGAAATCTAGA
TGCCCTGCCCCTGGTGAGCCATATCATATAACTTCAGTGCCGCCCTCCCCTCTCTATCTCCCAAC
CCATAAGCAACCGGGTTCGGTTCATCTGATATGATATCGCATGGGGTTGCTGCCTATCCTATCTA
TCTTTGAGACGGGAGTATGGTATGGCTTGGGTGCCACTCCATATC
Found at i:285252 original size:20 final size:20
Alignment explanation
Indices: 285229--285271 Score: 77
Period size: 20 Copynumber: 2.1 Consensus size: 20
285219 GATCTACTCT
285229 AGAGGGGAGGGATCGGATAG
1 AGAGGGGAGGGATCGGATAG
*
285249 AGAGGGGAGGGTTCGGATAG
1 AGAGGGGAGGGATCGGATAG
285269 AGA
1 AGA
285272 TCAGACAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.30, C:0.05, G:0.53, T:0.12
Consensus pattern (20 bp):
AGAGGGGAGGGATCGGATAG
Left flanking sequence: Indices 284729 -- 285228
GGATTAGATACCACTCATATCTAGCCACCCCACCACTCATACCCGGTTGCGGTTGCTAATATATC
CTATCCCTATCCCCCCACTCAGACCCCTAATACCACTCATCGGCACCTACCCGAAGGGGAGCCGT
GCTTTGATACGGGAGCCTTGGGTGCCTGCCTATCTATCCGAAGGAATGGGGCTGGGGTTCATCAG
TGGCCCATATAGTTCTAGGGGGCCTCCCCCCAACCCAATATAGAGTAGAGTCTATATAGATTAGA
TAGAGGGGCCCCCCTATCTATATATATGGAGAGGCCGAGCCGTGCTTTGATCTCCACCCTTTCAA
TCCAGTGGGCAAACTATATAGACTCAGTCTCGGATGGATACTCTCTATATCGGATGGATAGGGGG
GTTGGTCAATATAGAGATATGGGCAACCGGGTCTGAGTGGGGGGATAGGGATAGGATATATTAGC
AACCGCAACCGGGCCGGGTTTGGATCGAGGGGAGGGATCTACTCT
Right flanking sequence: Indices 285272 -- 285771
TCAGACAGTTGGGTTTGCTAACAACCATATAGCAACCGAGTTGCGGCTCGAGGGGCTATATCTAT
AGAATTGGCAACCGGGTTTGGTCTCGAGGGGCTATATCTATAGAATTGGCAACCGGGTTGGGATC
AGAGGGGAGGGTTGGGTTGGTCACTCTCTATCATAGAGGCCGGGTTGGCTAGATATAGATATAGA
GGCCGGGTTGGGTTGGTCACTATCTATCTCTCTATCTCTCTTGTCTATCGATACAGATAAGATAG
AGATCAGATCAGATCAGATCAGAGATTAGAAACCCAACCCTCGACTGATATCATGTTAGATCGGA
GATGTAGTGGAGGCCAGATCAATCTATAGAGAGGGCATATAGAATACAGATCTCTATCTCTCTCT
CTCTAGATCTCACTCTGAACTCTGAACTCTTCACTCTCTATCTGTGCCTTCCGGATCGGTCTGGT
TGGTGAAGCGGAGCAACCCCATAGAGAGATAGAGAGATATAGGTG
Found at i:285363 original size:41 final size:41
Alignment explanation
Indices: 285318--285395 Score: 156
Period size: 41 Copynumber: 1.9 Consensus size: 41
285308 CGAGTTGCGG
285318 CTCGAGGGGCTATATCTATAGAATTGGCAACCGGGTTTGGT
1 CTCGAGGGGCTATATCTATAGAATTGGCAACCGGGTTTGGT
285359 CTCGAGGGGCTATATCTATAGAATTGGCAACCGGGTT
1 CTCGAGGGGCTATATCTATAGAATTGGCAACCGGGTT
285396 GGGATCAGAG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (41 bp):
CTCGAGGGGCTATATCTATAGAATTGGCAACCGGGTTTGGT
Left flanking sequence: Indices 284818 -- 285317
CCCTAATACCACTCATCGGCACCTACCCGAAGGGGAGCCGTGCTTTGATACGGGAGCCTTGGGTG
CCTGCCTATCTATCCGAAGGAATGGGGCTGGGGTTCATCAGTGGCCCATATAGTTCTAGGGGGCC
TCCCCCCAACCCAATATAGAGTAGAGTCTATATAGATTAGATAGAGGGGCCCCCCTATCTATATA
TATGGAGAGGCCGAGCCGTGCTTTGATCTCCACCCTTTCAATCCAGTGGGCAAACTATATAGACT
CAGTCTCGGATGGATACTCTCTATATCGGATGGATAGGGGGGTTGGTCAATATAGAGATATGGGC
AACCGGGTCTGAGTGGGGGGATAGGGATAGGATATATTAGCAACCGCAACCGGGCCGGGTTTGGA
TCGAGGGGAGGGATCTACTCTAGAGGGGAGGGATCGGATAGAGAGGGGAGGGTTCGGATAGAGAT
CAGACAGTTGGGTTTGCTAACAACCATATAGCAACCGAGTTGCGG
Right flanking sequence: Indices 285396 -- 285895
GGGATCAGAGGGGAGGGTTGGGTTGGTCACTCTCTATCATAGAGGCCGGGTTGGCTAGATATAGA
TATAGAGGCCGGGTTGGGTTGGTCACTATCTATCTCTCTATCTCTCTTGTCTATCGATACAGATA
AGATAGAGATCAGATCAGATCAGATCAGAGATTAGAAACCCAACCCTCGACTGATATCATGTTAG
ATCGGAGATGTAGTGGAGGCCAGATCAATCTATAGAGAGGGCATATAGAATACAGATCTCTATCT
CTCTCTCTCTAGATCTCACTCTGAACTCTGAACTCTTCACTCTCTATCTGTGCCTTCCGGATCGG
TCTGGTTGGTGAAGCGGAGCAACCCCATAGAGAGATAGAGAGATATAGGTGAGGGACCATCTCTG
CTGGTGAGAGTATCGGCCCCCTCGATACGATACTCAAGATCGGGCATCCCTATCTATCTTATCCC
TATCTATATCTATATGGCCCCCTATCTATCCAATCCCCACCCATT
Found at i:285407 original size:41 final size:39
Alignment explanation
Indices: 285303--285408 Score: 140
Period size: 41 Copynumber: 2.6 Consensus size: 39
285293 CAACCATATA
*
285303 GCAACCGAGTTGCGGCTCGAGGGGCTATATCTATAGAATTG
1 GCAACCGGGTTG-GG-TCGAGGGGCTATATCTATAGAATTG
*
285344 GCAACCGGGTTTGGTCTCGAGGGGCTATATCTATAGAATTG
1 GCAACCGGG-TTGG-GTCGAGGGGCTATATCTATAGAATTG
285385 GCAACCGGGTTGGGATCAGAGGGG
1 GCAACCGGGTTGGG-TC-GAGGGG
285409 AGGGTTGGGT
Statistics
Matches: 58, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
40 6 0.10
41 49 0.84
42 3 0.05
ACGTcount: A:0.23, C:0.18, G:0.36, T:0.24
Consensus pattern (39 bp):
GCAACCGGGTTGGGTCGAGGGGCTATATCTATAGAATTG
Left flanking sequence: Indices 284803 -- 285302
TCCCCCCACTCAGACCCCTAATACCACTCATCGGCACCTACCCGAAGGGGAGCCGTGCTTTGATA
CGGGAGCCTTGGGTGCCTGCCTATCTATCCGAAGGAATGGGGCTGGGGTTCATCAGTGGCCCATA
TAGTTCTAGGGGGCCTCCCCCCAACCCAATATAGAGTAGAGTCTATATAGATTAGATAGAGGGGC
CCCCCTATCTATATATATGGAGAGGCCGAGCCGTGCTTTGATCTCCACCCTTTCAATCCAGTGGG
CAAACTATATAGACTCAGTCTCGGATGGATACTCTCTATATCGGATGGATAGGGGGGTTGGTCAA
TATAGAGATATGGGCAACCGGGTCTGAGTGGGGGGATAGGGATAGGATATATTAGCAACCGCAAC
CGGGCCGGGTTTGGATCGAGGGGAGGGATCTACTCTAGAGGGGAGGGATCGGATAGAGAGGGGAG
GGTTCGGATAGAGATCAGACAGTTGGGTTTGCTAACAACCATATA
Right flanking sequence: Indices 285409 -- 285908
AGGGTTGGGTTGGTCACTCTCTATCATAGAGGCCGGGTTGGCTAGATATAGATATAGAGGCCGGG
TTGGGTTGGTCACTATCTATCTCTCTATCTCTCTTGTCTATCGATACAGATAAGATAGAGATCAG
ATCAGATCAGATCAGAGATTAGAAACCCAACCCTCGACTGATATCATGTTAGATCGGAGATGTAG
TGGAGGCCAGATCAATCTATAGAGAGGGCATATAGAATACAGATCTCTATCTCTCTCTCTCTAGA
TCTCACTCTGAACTCTGAACTCTTCACTCTCTATCTGTGCCTTCCGGATCGGTCTGGTTGGTGAA
GCGGAGCAACCCCATAGAGAGATAGAGAGATATAGGTGAGGGACCATCTCTGCTGGTGAGAGTAT
CGGCCCCCTCGATACGATACTCAAGATCGGGCATCCCTATCTATCTTATCCCTATCTATATCTAT
ATGGCCCCCTATCTATCCAATCCCCACCCATTTCATTTCTACGAG
Found at i:286098 original size:5 final size:5
Alignment explanation
Indices: 286088--286125 Score: 76
Period size: 5 Copynumber: 7.6 Consensus size: 5
286078 CGCCCTGAAC
286088 TATCT TATCT TATCT TATCT TATCT TATCT TATCT TAT
1 TATCT TATCT TATCT TATCT TATCT TATCT TATCT TAT
286126 TGGGATTGGG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 33 1.00
ACGTcount: A:0.21, C:0.18, G:0.00, T:0.61
Consensus pattern (5 bp):
TATCT
Left flanking sequence: Indices 285588 -- 286087
TAGATCGGAGATGTAGTGGAGGCCAGATCAATCTATAGAGAGGGCATATAGAATACAGATCTCTA
TCTCTCTCTCTCTAGATCTCACTCTGAACTCTGAACTCTTCACTCTCTATCTGTGCCTTCCGGAT
CGGTCTGGTTGGTGAAGCGGAGCAACCCCATAGAGAGATAGAGAGATATAGGTGAGGGACCATCT
CTGCTGGTGAGAGTATCGGCCCCCTCGATACGATACTCAAGATCGGGCATCCCTATCTATCTTAT
CCCTATCTATATCTATATGGCCCCCTATCTATCCAATCCCCACCCATTTCATTTCTACGAGTTGA
GAATAGAATAGAATGTTGTATCATATATAGATAGGGATCGGATCCCCCCGATCTTTAGTCTAGAC
CCATACCATCTATATTCTCTAATATGACCTGCCCACTCTCTCTCGGGTACAACTCTTCGTTGGGT
TGGCCGACATCTAGTTTCGTTGGGTTGGCCGCCCCCGCCCTGAAC
Right flanking sequence: Indices 286126 -- 286625
TGGGATTGGGATTATTGATTGGGATTGGCCCCCCCCTCACCCTCCATAGTTCAGATATAGGGGCG
GGTGAGTGCATAAGATCGGGGCCCTCGGGGGCCTATATCTCTAGGGGCGCCCCCGTCTCTATAGA
CTAGACTATAGATAGGGCCTTTCAATTTATGGAGATAGAGATATAGGCGTTAATCACCTCGACCT
CCCTCTATAGAATAGATATGGGCCCTCTATACTCACTCTCTATATAGTCTATATGGGGTGGGCGC
CTATAGCCTATATAGATCTTTTCTTTCTACCGTGGTTCCTCCCTCTACTATACTCAGTCGATAGC
TTCATAGAGAGATCAGGCGGTCACCCCCAACCCCCCCCTCTCCTATAGATCTTATCTGATCTATA
TGGCTCGGCAGTCATATCGGTAGCGACCCATATCTATCTAGAGGGGGGGATTCCACATCCATATA
GTATAGAGGGCTTCTTCCCTTTCATATAATATAATATAATATAAT
Found at i:286614 original size:5 final size:5
Alignment explanation
Indices: 286604--286696 Score: 186
Period size: 5 Copynumber: 18.6 Consensus size: 5
286594 CTTCCCTTTC
286604 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
286654 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATA
286697 AAGAGGCTCT
Statistics
Matches: 88, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 88 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (5 bp):
ATATA
Left flanking sequence: Indices 286104 -- 286603
ATCTTATCTTATCTTATCTTATTGGGATTGGGATTATTGATTGGGATTGGCCCCCCCCTCACCCT
CCATAGTTCAGATATAGGGGCGGGTGAGTGCATAAGATCGGGGCCCTCGGGGGCCTATATCTCTA
GGGGCGCCCCCGTCTCTATAGACTAGACTATAGATAGGGCCTTTCAATTTATGGAGATAGAGATA
TAGGCGTTAATCACCTCGACCTCCCTCTATAGAATAGATATGGGCCCTCTATACTCACTCTCTAT
ATAGTCTATATGGGGTGGGCGCCTATAGCCTATATAGATCTTTTCTTTCTACCGTGGTTCCTCCC
TCTACTATACTCAGTCGATAGCTTCATAGAGAGATCAGGCGGTCACCCCCAACCCCCCCCTCTCC
TATAGATCTTATCTGATCTATATGGCTCGGCAGTCATATCGGTAGCGACCCATATCTATCTAGAG
GGGGGGATTCCACATCCATATAGTATAGAGGGCTTCTTCCCTTTC
Right flanking sequence: Indices 286697 -- 287196
AAGAGGCTCTATATGACTGTCACCCCCAACCCCACCCCCTATAGATCTTATCTGATCTATATGGC
AGGGCAGTCATATCGGTAGCGACCCATATCTATCTATAGGGGAGCATATAGTAGAGAGGGCTTCT
TCCCAGCCCTATATATAGAACTATAACTGTCACTAAATTCAATTCCTATCTCAACTGCAACTGGA
ATATAGATATTATTCATCCGGCTGTATAGAGGGTGATCGACCCCCTCTCTAGATATGGGGGGGGG
CGGGACACGACACCTAGTGGATTAGTCACCATACCGTACCGGTTCTCCATTTGATATGAAGTTGG
GCTCCGCATATAGGCATATAGTTATAGCTATAGTGGAGGTGGAGGGCCGCCCACTGTCTAGATAG
GCGCGGGAGACTAGACTCTGGTGCAACCTACACCTAACTACCTACACCCATATCGTCATAGGGGC
CCCCCCTCCATAGAATAGAGGGGCCCTATAGATATATCTTCTCGC
Found at i:290447 original size:31 final size:31
Alignment explanation
Indices: 290409--290510 Score: 97
Period size: 31 Copynumber: 3.3 Consensus size: 31
290399 CTGGCGACCC
290409 GATAGGGGCCCCCACCCCAATAGAGAGTCTA
1 GATAGGGGCCCCCACCCCAATAGAGAGTCTA
* *
290440 GATAGGGGGCTCTTCCTCGACCCCCAT--ATAG---A
1 GATA-GGGGC-C--CC-C-ACCCCAATAGAGAGTCTA
290472 GATAGGGGCCCCCACCCCAATAGAGAGTCTA
1 GATAGGGGCCCCCACCCCAATAGAGAGTCTA
290503 GATAGGGG
1 GATAGGGG
290511 GCTCTTCCTC
Statistics
Matches: 56, Mismatches: 4, Indels: 22
0.68 0.05 0.27
Matches are distributed among these distances:
26 7 0.12
27 1 0.02
28 5 0.09
30 1 0.02
31 18 0.32
32 10 0.18
33 1 0.02
35 5 0.09
36 1 0.02
37 7 0.12
ACGTcount: A:0.26, C:0.29, G:0.28, T:0.16
Consensus pattern (31 bp):
GATAGGGGCCCCCACCCCAATAGAGAGTCTA
Left flanking sequence: Indices 289909 -- 290408
TAGATCTCTATTTCTATATATCTATCTAACGGATGTATGGCCCTATTCATATATGGCTCGACCAT
CGGGAGAGGGCCGGGGGCCAGGCCCCTCTCCCGACGCCTCTACTCACCAGATAGAGAGAGGGGCC
CCTAGATCTATAGGCCATCGGGAGAGCACCCTATAGAAAGAAAATCTATGGCGATAGCCTCGACC
GCCCACCGGGGGGGGGGTTGGGCCCTATCCATATATGGGGGCCCTATCTAGAACTATAAGATAAG
ATCTATATAGAGGGGGGGGTGGGGGGGGGCCCCCTCTCCCCCTCTATATAGATCTTATCTCTCTG
GTCGAGTGCCGACGTCGCCCCATAGATAGAATAGAGAATAGGGCTCTTCCCCCTCGATTCCCCCT
CCCTCTCCCCTAGCTATATGGTATGGCGACGGCATATAGAGCTTGCTTTAACTGGCGCCATATCC
ATATAGTTAGATAGCCCCATATATAGAACTTCTAACTGGCGACCC
Right flanking sequence: Indices 290511 -- 291010
GCTCTTCCTCGACCCCCCCTCCTCTCATTCAGAATTCTAGATAGGGGGCGGGGGTGCCCATCGAG
TAGAGAGCGGCCCCTATCTATATATGGGAGAGCTGTCCGTCAATCAAGTGAAGAGAGATCCCCGG
CCCCGGCTATATATGATATGGAGAGTTTCCCCTATCTAGACTCCCCTATCTCTAGTTCGGGGGCA
CCCTGAACTATCTATTCTCTATGGCGAGGTCATCCATTATAGACGTGATAGATATCAGTCATCAG
TCGTATCACGTATATAGTATAGAGAATGGATGGCCCTGAACTATCTGCCCTAGATATAGAGAGAT
CTATATGCCTATATATCCCCTATATAGAGAAGGGGGGGGCCGACCCTATCTCTATATGGGCACTC
GACCCCCTCTATCTCTAACTATATGGGGTTGAGGAACTATGACTATATAGGCCCCGCCCCTATAG
AGAGATCTGGAGGGGGGAGGAGGGGGAGGGGGCTACTTAAGCCAT
Found at i:290485 original size:63 final size:63
Alignment explanation
Indices: 290409--290527 Score: 238
Period size: 63 Copynumber: 1.9 Consensus size: 63
290399 CTGGCGACCC
290409 GATAGGGGCCCCCACCCCAATAGAGAGTCTAGATAGGGGGCTCTTCCTCGACCCCCATATAGA
1 GATAGGGGCCCCCACCCCAATAGAGAGTCTAGATAGGGGGCTCTTCCTCGACCCCCATATAGA
290472 GATAGGGGCCCCCACCCCAATAGAGAGTCTAGATAGGGGGCTCTTCCTCGACCCCC
1 GATAGGGGCCCCCACCCCAATAGAGAGTCTAGATAGGGGGCTCTTCCTCGACCCCC
290528 CCTCCTCTCA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 56 1.00
ACGTcount: A:0.24, C:0.34, G:0.26, T:0.17
Consensus pattern (63 bp):
GATAGGGGCCCCCACCCCAATAGAGAGTCTAGATAGGGGGCTCTTCCTCGACCCCCATATAGA
Left flanking sequence: Indices 289909 -- 290408
TAGATCTCTATTTCTATATATCTATCTAACGGATGTATGGCCCTATTCATATATGGCTCGACCAT
CGGGAGAGGGCCGGGGGCCAGGCCCCTCTCCCGACGCCTCTACTCACCAGATAGAGAGAGGGGCC
CCTAGATCTATAGGCCATCGGGAGAGCACCCTATAGAAAGAAAATCTATGGCGATAGCCTCGACC
GCCCACCGGGGGGGGGGTTGGGCCCTATCCATATATGGGGGCCCTATCTAGAACTATAAGATAAG
ATCTATATAGAGGGGGGGGTGGGGGGGGGCCCCCTCTCCCCCTCTATATAGATCTTATCTCTCTG
GTCGAGTGCCGACGTCGCCCCATAGATAGAATAGAGAATAGGGCTCTTCCCCCTCGATTCCCCCT
CCCTCTCCCCTAGCTATATGGTATGGCGACGGCATATAGAGCTTGCTTTAACTGGCGCCATATCC
ATATAGTTAGATAGCCCCATATATAGAACTTCTAACTGGCGACCC
Right flanking sequence: Indices 290528 -- 291027
CCTCCTCTCATTCAGAATTCTAGATAGGGGGCGGGGGTGCCCATCGAGTAGAGAGCGGCCCCTAT
CTATATATGGGAGAGCTGTCCGTCAATCAAGTGAAGAGAGATCCCCGGCCCCGGCTATATATGAT
ATGGAGAGTTTCCCCTATCTAGACTCCCCTATCTCTAGTTCGGGGGCACCCTGAACTATCTATTC
TCTATGGCGAGGTCATCCATTATAGACGTGATAGATATCAGTCATCAGTCGTATCACGTATATAG
TATAGAGAATGGATGGCCCTGAACTATCTGCCCTAGATATAGAGAGATCTATATGCCTATATATC
CCCTATATAGAGAAGGGGGGGGCCGACCCTATCTCTATATGGGCACTCGACCCCCTCTATCTCTA
ACTATATGGGGTTGAGGAACTATGACTATATAGGCCCCGCCCCTATAGAGAGATCTGGAGGGGGG
AGGAGGGGGAGGGGGCTACTTAAGCCATCTATCTATAGTTCAGGG
Found at i:292832 original size:12 final size:12
Alignment explanation
Indices: 292810--292882 Score: 101
Period size: 12 Copynumber: 6.0 Consensus size: 12
292800 GTTCGGTTCA
*
292810 AGAGATATATAT
1 AGAGATCTATAT
** *
292822 AGATCTATATAAT
1 AGAGATCTAT-AT
292835 AGAGATCTATAT
1 AGAGATCTATAT
292847 AGAGATCTATAT
1 AGAGATCTATAT
292859 AGAGATCTATAT
1 AGAGATCTATAT
292871 AGAGATCTATAT
1 AGAGATCTATAT
292883 TAGGGCGAGT
Statistics
Matches: 55, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
12 46 0.84
13 9 0.16
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.34
Consensus pattern (12 bp):
AGAGATCTATAT
Left flanking sequence: Indices 292310 -- 292809
GAACTCCCCCTATATAGATAGGCGAGGGCCCCCTATCCCTATGACGATGTGGGGGTGGGGGTGGG
GTCTGGGGTGGGGGTGGGGAACGGATCGAAGATTGACCCCCCCCCTATCTATATATCACTAACGA
CCTCTCTATTCCCTATCTATTCTGATCTGAACAGTGACGCCCCCATATAGATAGAGAGATAGGGC
CACCGCATCTATCTATAGAAAAGGGCAGACCCCATAGATCCTATCCCCCTCGGGGGTGAACGGAT
GCACGCACCTCCCACTGAAGACTACTGCCTCACCCCTGGGCGCCTATATGGATACAGGGGTACCC
AACCCTTCTCCCTCATACTCAAGATTCTCACTCAGGATAATGAAGGCACTGGCTGGCGGGCCCCT
ATCTATATATGGGTGATGGTGCTCTCGACTGAGATATACGACTGACTCTCCATAGTCCGCAACTA
GAGACTGCAAGCGGGCTATAGATTCTCTATTCCTTGTTCGGTTCA
Right flanking sequence: Indices 292883 -- 293382
TAGGGCGAGTCTCCCGACGGCCATAGATATCGAGAGCCTACTGATGTCTCTCCTTCTCCCCTTCT
CTTCTATATAGAGGCAATCCGATCTCCCCCTAGAATAGATAGATAGATAGATATGGGCCCTCTCC
CGAGCCCCCATATCTATCTAGGGGGGGTGCAGACCCATCTATAGAGAAGAGATCTGGGTGGGGCC
CCCCCCCTCTCTATTCTATCTTATCTCGGCTCCCCGATCGGGGGCCCTCTCTATTCTATCTTATC
TCGCCATATAGATAGTTCAGGGCTCCCCCCATCTATATAGAAGGGCTCGGTATTCTCTATATCTC
GGCTCTATATCTGGGCTATATAGAGTCCCCCGACGGCCCCAGATAGAGAGATTCTAGAGAAATGG
CTGGGGGAGGAGGGGGGGGGGGGGGGGAGGGAACTCTAGATACATGAGGGCCCGTATAGGTATAT
AGAGGGTGCCGACGGGCCCAGGGACTATAAGGCTAGATGCCTATC
Found at i:293818 original size:30 final size:30
Alignment explanation
Indices: 293782--293851 Score: 140
Period size: 30 Copynumber: 2.3 Consensus size: 30
293772 GCCCCAGATA
293782 GCACTCGACTATCACTCTCTATAGCACTGG
1 GCACTCGACTATCACTCTCTATAGCACTGG
293812 GCACTCGACTATCACTCTCTATAGCACTGG
1 GCACTCGACTATCACTCTCTATAGCACTGG
293842 GCACTCGACT
1 GCACTCGACT
293852 GAACCGAGGT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 40 1.00
ACGTcount: A:0.23, C:0.34, G:0.17, T:0.26
Consensus pattern (30 bp):
GCACTCGACTATCACTCTCTATAGCACTGG
Left flanking sequence: Indices 293282 -- 293781
GAGGGGGGGGGGGGGGGGAGGGAACTCTAGATACATGAGGGCCCGTATAGGTATATAGAGGGTGC
CGACGGGCCCAGGGACTATAAGGCTAGATGCCTATCCCTATCTAAAGTAGCTTAGCCCCATCTAG
AGTTCTCCCGGGAGGCCGAGGGGGAAGAGCCTATAGTTCTTTCTATCTGGGGGCTTTTCTATCTG
CCCTATCTAGATCAGATATAGGGTGAACTCTATCTAGATGGGGGCGCCTACGTTCTATCTGGACT
GGAGAGGAGGCCGAGAGCTAAGCTGCTATGGATAGGAGTTATAGTTCTCTCGGCCGCTGATCCGG
GTCTGATCCAGGTATAGAGGCCGCCCCCCGGCCGGCTGATAGGGGCGCCCCCAATAGAATCTATA
TCCCCCTATCTATAGAATCTATATGGGAGAACCCAACCGAACCAGAGGCGTATGGATATAGGGGC
ATCAGTAGGCTCAATGTTCCTAGATTCCAGTTGGTGCCCCAGATA
Right flanking sequence: Indices 293852 -- 294351
GAACCGAGGTTCCTACTCTATACGTAACATGACCTGACCCGACCCGACCTTCTCCCTTCTCTATA
TGGCATGGCCCACTGCCCCACTGAGCTATATGGAGTGTATAGTCGGGGTCGGTTGGAGATAGGAG
ATACACGGAATAGAGATGGGGACGAGCATGAATGAATGTATGGTTGGATCACTCGACTTACGCTC
CGCTCCCCCTCTATAGTGAAATAGATGGCAGATATCTTGTCATGGGCGCCCCATAGAGAGCCCCC
CTCTCTATTCTATCTTATCTCGGCTCCCCCAGATCCAGATATAGAGAAGGGGGTGTAGATATATC
TATCAGAGAACCCTCCCCCTACCCCTCCCCCTCTATATAGATCACGAAAGGGCAGCTATAGAATC
TATATAGATAGATATAGGGGGGCGCTCTCTATACTCTATATGCTGTCGGCGCCCTCTATACTCTA
TAGGGTCTATGGGGTGGGGGCCCTATCTCTCTATGGGGGCATGCC
Found at i:295317 original size:13 final size:13
Alignment explanation
Indices: 295299--295324 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
295289 GTTACGTATG
295299 TATAGAGTATGGA
1 TATAGAGTATGGA
295312 TATAGAGTATGGA
1 TATAGAGTATGGA
295325 CTGCATCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.38, C:0.00, G:0.31, T:0.31
Consensus pattern (13 bp):
TATAGAGTATGGA
Left flanking sequence: Indices 294799 -- 295298
CTCTAGCCGGCGATCTTGAGTTATGGGCAATCTCACTATCTATATAGAGGATTGTTGATTGTAGC
TCGATCATGTCAGTGGCCTTCTCAGGCCCTCAGCCGATGGAGATTAAACCCATATCATATATAGA
TAGGGGGGATCACTTGAATCGGCCCGCCCCGCTGACTGCTTTGACTCGATATGGCGATATGGTAT
TATAGGTATAGGTCGGGCGAGTATGCCGCCCTGTGACCACTCGTACACCGGGCCCGATACCGAAG
CCACTCCCAAGGCGTAAGGCGGCGCGTCGAATAGACGGAACGACGATGCCTCTCTCTCTTCTATA
TAGATGGGCCGGGTTAGACCCGGAAACCGGTTAGCCCCCGGTTGCAGAACAGATCCGGATGGCGG
TGAGCCGTTAATAGATAGTGATGGCACCACGCGGTGATACGACTGATCTATCTATCTATCCAAAG
GAGTGATACGACTGATGACTGATATCAGTCATCATGTTACGTATG
Right flanking sequence: Indices 295325 -- 295824
CTGCATCACTCTAGTCCCCCATACCATAGAGTATGGATATAGAGTATGGACTGCATCACTATAGG
ACTAGACATACATATCAGTCTAGTCGGGAATGGATGGACTGCATCACTATAGGACTAGACCCGTA
TGGCATAGCATCACTGCATCAACCACTCGGCCGATGGGTGTTACGTATAGACCGCATCACCGCGA
AAAAAAAAAGAAACAGGGGATGGGCGAATCTGGAATATACAACTCTAGGCTACGGATGGGCATCA
CTCACTTCACTGGAGGGCCGAACTCTAGGCGGGGCTCACGGGTTTCATGTATATAGAGAGGGCAC
TATAGTATGGCACTATAGTCTGGTTCTGGCATCACTCACTTCACTAGAGGGGCGGACCACCCGAG
ACAACCACTAATCCACCCTACCACCATTGTTACGAAACCACCGCTGCCGCCGAGCAGCACTAGAT
CTATATTAGATCGATCCCTACCCCCGAATCCCCTCGAGTGATTGA
Found at i:295368 original size:13 final size:13
Alignment explanation
Indices: 295350--295374 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
295340 CCCCCATACC
295350 ATAGAGTATGGAT
1 ATAGAGTATGGAT
295363 ATAGAGTATGGA
1 ATAGAGTATGGA
295375 CTGCATCACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.32, T:0.28
Consensus pattern (13 bp):
ATAGAGTATGGAT
Left flanking sequence: Indices 294850 -- 295349
TTGTTGATTGTAGCTCGATCATGTCAGTGGCCTTCTCAGGCCCTCAGCCGATGGAGATTAAACCC
ATATCATATATAGATAGGGGGGATCACTTGAATCGGCCCGCCCCGCTGACTGCTTTGACTCGATA
TGGCGATATGGTATTATAGGTATAGGTCGGGCGAGTATGCCGCCCTGTGACCACTCGTACACCGG
GCCCGATACCGAAGCCACTCCCAAGGCGTAAGGCGGCGCGTCGAATAGACGGAACGACGATGCCT
CTCTCTCTTCTATATAGATGGGCCGGGTTAGACCCGGAAACCGGTTAGCCCCCGGTTGCAGAACA
GATCCGGATGGCGGTGAGCCGTTAATAGATAGTGATGGCACCACGCGGTGATACGACTGATCTAT
CTATCTATCCAAAGGAGTGATACGACTGATGACTGATATCAGTCATCATGTTACGTATGTATAGA
GTATGGATATAGAGTATGGACTGCATCACTCTAGTCCCCCATACC
Right flanking sequence: Indices 295375 -- 295874
CTGCATCACTATAGGACTAGACATACATATCAGTCTAGTCGGGAATGGATGGACTGCATCACTAT
AGGACTAGACCCGTATGGCATAGCATCACTGCATCAACCACTCGGCCGATGGGTGTTACGTATAG
ACCGCATCACCGCGAAAAAAAAAAGAAACAGGGGATGGGCGAATCTGGAATATACAACTCTAGGC
TACGGATGGGCATCACTCACTTCACTGGAGGGCCGAACTCTAGGCGGGGCTCACGGGTTTCATGT
ATATAGAGAGGGCACTATAGTATGGCACTATAGTCTGGTTCTGGCATCACTCACTTCACTAGAGG
GGCGGACCACCCGAGACAACCACTAATCCACCCTACCACCATTGTTACGAAACCACCGCTGCCGC
CGAGCAGCACTAGATCTATATTAGATCGATCCCTACCCCCGAATCCCCTCGAGTGATTGAATCCG
CCTATATATAGATAGGGGGCGGAAGCGATGAGGATTGGATTGAGC
Found at i:296854 original size:5 final size:5
Alignment explanation
Indices: 296844--296908 Score: 130
Period size: 5 Copynumber: 13.0 Consensus size: 5
296834 CTATCTAATA
296844 TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG
1 TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG
296894 TATGG TATGG TATGG
1 TATGG TATGG TATGG
296909 GGGAGACTAT
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 60 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (5 bp):
TATGG
Left flanking sequence: Indices 296344 -- 296843
GATATGGCGCCCCCCTCTAGATCTATGGCCCCCCTATATAGAGAATTGGCGGGGGGGCCTCCCAG
ATAAGATAGTATGGCCTCCCCTCTACTAATGAACAAAACAGGGGCGGCTATGTTCTATATATGGA
GAGTTGGCAACGGGAGAGCACGGAACGGCCATATAGAGATATAGGCACTCGGCCGACAAGATCGG
TCAGATGGATGATTCCCGCCAGATAGAACTATAGGGCCGGAAGGGACTACTGGAAGGACAATACT
CCCCCTCCCCCAGCCGAGCCGATCGGCCTGTTGGTTGATTGAGCTGGGGCCCCTATATCTATATG
GCGTAGTGAACGGATAGATAGGGAAGATATAGAGAGAGGGGGTCGCTTGCAAGAATTGAGGCCCT
TCACTACGCTACGCTCACCCTAGAGTTCTATATGGCTGAAGGGACTCTCTCTTTAGTCTAGCCCC
TCACCCCTATGGGGGCAGATATAGATAGAGGGCCCCTATCTAATA
Right flanking sequence: Indices 296909 -- 297408
GGGAGACTATCAGGCTATCGAAACTCTAGATAGCCGTGCGCCGACGGGAGCTATATAGAGTATAG
TCGGCACCCAGATATACGGCGACGGCCTACCCTACTGATATGTAGTATAGCCGGACAACTCGGGG
GCATCTAGAGCCCCCATAGAACCCTTTCTATAGAAGGGGGCCCTCCCCTCTCTCTCTATATGGAC
TGATGGGCCCTATCTCCCCTCTATTCTATGGAGGGGGGGGGGGGGGCGATAGGCTAGATATCTAG
ATGGGGGGGCAACTATAGCTATCTATATAGGGTCGGGCCGGATCGCTGCCCTATCTATATATTCG
TTTCGACTGAAGCCAGTTCTAAGTTCGGGGAGGGGATCGGCTTAGAGGAGTCTTATAATCTCGAT
TCTCGTCTTATAATCTCGATTCTCGTCTTGTCCCCCTCATCTATATACCGATTCTCGTCTTGGAT
CTATATGTCATTCCGATTCTCGTCTTATGATGATCTATAGTTCGG
Found at i:297308 original size:20 final size:20
Alignment explanation
Indices: 297283--297327 Score: 90
Period size: 20 Copynumber: 2.2 Consensus size: 20
297273 GCTTAGAGGA
297283 GTCTTATAATCTCGATTCTC
1 GTCTTATAATCTCGATTCTC
297303 GTCTTATAATCTCGATTCTC
1 GTCTTATAATCTCGATTCTC
297323 GTCTT
1 GTCTT
297328 GTCCCCCTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.18, C:0.24, G:0.11, T:0.47
Consensus pattern (20 bp):
GTCTTATAATCTCGATTCTC
Left flanking sequence: Indices 296783 -- 297282
TCTTTAGTCTAGCCCCTCACCCCTATGGGGGCAGATATAGATAGAGGGCCCCTATCTAATATATG
GTATGGTATGGTATGGTATGGTATGGTATGGTATGGTATGGTATGGTATGGTATGGTATGGGGGA
GACTATCAGGCTATCGAAACTCTAGATAGCCGTGCGCCGACGGGAGCTATATAGAGTATAGTCGG
CACCCAGATATACGGCGACGGCCTACCCTACTGATATGTAGTATAGCCGGACAACTCGGGGGCAT
CTAGAGCCCCCATAGAACCCTTTCTATAGAAGGGGGCCCTCCCCTCTCTCTCTATATGGACTGAT
GGGCCCTATCTCCCCTCTATTCTATGGAGGGGGGGGGGGGGGCGATAGGCTAGATATCTAGATGG
GGGGGCAACTATAGCTATCTATATAGGGTCGGGCCGGATCGCTGCCCTATCTATATATTCGTTTC
GACTGAAGCCAGTTCTAAGTTCGGGGAGGGGATCGGCTTAGAGGA
Right flanking sequence: Indices 297328 -- 297827
GTCCCCCTCATCTATATACCGATTCTCGTCTTGGATCTATATGTCATTCCGATTCTCGTCTTATG
ATGATCTATAGTTCGGGGCTGGGACCCCTATAGACTATTCTATCTGGTCAGTCGTATCACGTCTC
TATCCTATCCCATCCATAGTTCAGGGGTAGGGGTGGCGGCTATATCCATATCCCAGATCCAGCCC
CTATCTGAATGAGAGGGGGGGGGCCGGGCCAACCAACTAGAGAATATACAGTCGAGGGAAGACCT
CGATCTATCGCCGGTGCATAAATGCAGCGTAGAGTAGGGAGATCTATAGAATGGGGCCCCCTATC
TAATCTCTAATCATGGTGACCCAACCAGAGAGAGAGAGGGGCTATATCTCGGCTCTATAGATACA
ATAGATATATAGGGGCGGGGGGGGGCTCCCCCCCTATCTCTATATGATATCTTAGAGATATAGCC
CTATACTATATATCTCTGGGGGGGGCTCGGCTCTCTATTCAACCT
Found at i:298007 original size:21 final size:22
Alignment explanation
Indices: 297965--298008 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
297955 TATGCTCCCA
*
297965 TATCTATATAGGGGGAGGGCCC
1 TATCTAGATAGGGGGAGGGCCC
*
297987 TATCTAGATATGGGG-GGGCCC
1 TATCTAGATAGGGGGAGGGCCC
298008 T
1 T
298009 CTATAGAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 7 0.35
22 13 0.65
ACGTcount: A:0.20, C:0.18, G:0.36, T:0.25
Consensus pattern (22 bp):
TATCTAGATAGGGGGAGGGCCC
Left flanking sequence: Indices 297465 -- 297964
TCCCATCCATAGTTCAGGGGTAGGGGTGGCGGCTATATCCATATCCCAGATCCAGCCCCTATCTG
AATGAGAGGGGGGGGGCCGGGCCAACCAACTAGAGAATATACAGTCGAGGGAAGACCTCGATCTA
TCGCCGGTGCATAAATGCAGCGTAGAGTAGGGAGATCTATAGAATGGGGCCCCCTATCTAATCTC
TAATCATGGTGACCCAACCAGAGAGAGAGAGGGGCTATATCTCGGCTCTATAGATACAATAGATA
TATAGGGGCGGGGGGGGGCTCCCCCCCTATCTCTATATGATATCTTAGAGATATAGCCCTATACT
ATATATCTCTGGGGGGGGCTCGGCTCTCTATTCAACCTCGCCCTCCCCAGATTCGCCTATGCCTA
TATAGAGAGGGGGGGCGCCATATTGAATTCTATATAGGGTGCCCCCCCCCTCTCTATATAGATAG
ACTAGATAGTTCAGGGGCGGCCCCCTATCTATCTATATGCTCCCA
Right flanking sequence: Indices 298009 -- 298508
CTATAGAGAACTAGAACTAGAGGGTGCCGACTCCCATATATATAGAGGGGCCCGGTCAAGAGCCC
CTCATCTATATCTAGGCACAGTCGGGCCATAGATCTACCATATAGAGAACCATGAGACTATAGTG
ATGCAGCGATGTCTCTATATCTAGAGTGCTCCCATCTATCCACCATACCCAACTATATAGAGGGG
GGGCGCCCTATCTATATATGGGGGGAGGTGATGCAGTGATGCCGCGTGCTCCCATCTATCTACCA
TGCTGTAGATGCCATACCATGCCATAGTGATGCCGCTCTCTACTCTATATACGGAACATGATTGG
CAGTTCAAGGAGATCCATCCGGCCATCCAACCATCCCATACCATACCCATATGTAGATGCTATAG
TTGTATGGGTATGGCGACTCTCTATATACTATAGATAGTGATGGACTATAGTAGGCGCTCGTCCG
ATAGGACCCCTAGATATATAGGCCCTATGACGATATGGGGGCCCC
Found at i:299211 original size:22 final size:22
Alignment explanation
Indices: 299186--299232 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
299176 ATCTATCGAC
299186 TGGCCTCATAAACTATAGATGT
1 TGGCCTCATAAACTATAGATGT
299208 TGGCCTCATAAACTATAGATGT
1 TGGCCTCATAAACTATAGATGT
299230 TGG
1 TGG
299233 GGCCTATAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (22 bp):
TGGCCTCATAAACTATAGATGT
Left flanking sequence: Indices 298686 -- 299185
GCGATACAGTAACTATTCCGAACCAACTGGACCATTCTATAGAGAGGGGGGGGTTCCCGAACCAA
CCTATTCGTAGACTGGGATGGATAGTGATAGTGGCCTACCACATGAACTCTTCCACCATTCCTTC
TTGGATAGATAGTGGCCGAACCACCATTCTCTCTCTCTTTCCGATACAGTAAGCCACCGAATAGA
TAGGACTGAACCAACCACCTATGCCGGGATGGCATTGATGGATAGTGGCCAGACTATTCCGAACC
TGTAGATGGATAGTGGCACGGGATCTATATAGATATCTGACGCCACCAACCACCAAATATGCCTG
AGAGGGGATAGGGATAGGACTGACGACTGACTGAACTAACACGTGACTACTCGGATAATCGGCAC
TCGCCATATAGATAAGATATATAGGCGGAGAATCCATTTCTGCCCTCAACCTATCAACTATTCCC
CTATATACATATGGCTCAAATGTTCTGTTTGTTATATCTATCGAC
Right flanking sequence: Indices 299233 -- 299732
GGCCTATAGATGACTGATGATATTACATAGATAATAGAATAGACTCGACCGGATCGACGTCCGAT
AGATAAGATTCTACGCCCCCCCCCCTCCCTCCAATATTGGATTGGACCCTCTAAATAGATAGATA
GGGCTGGGGGGGGTTGACCTACCTATATAGAGAGGGCCCTATATCTCTATAACTTCCATCGGTTC
ATCAATATAGTGATCTGATCCTATATCGATTGATTGATTATCTCATTCTATGGTGTTGGTCAGGG
CCCTCTACCTCTCTATATATCTTCAATAGATTGTGAGATTCTAGATACAATGTTTCTCTATTGTA
TCTGCCCTATCTCCCATAGAGATCTGGGGCTCCCCCCCTATCTCTATATGATATCTGCCGGCCCT
GAACTCTCTCTGGGGGGGCTCGGATCCCATCTCTATATAGGGGGGGTGAACAATCCGGGCGCCCA
GATATATAGATAGGGTGGAATATAGATCTATATATCTATATAGAG
Found at i:299728 original size:18 final size:18
Alignment explanation
Indices: 299707--299764 Score: 62
Period size: 18 Copynumber: 3.2 Consensus size: 18
299697 ATAGGGTGGA
*
299707 ATATAGATCTATATATCT
1 ATATAGATATATATATCT
* **
299725 ATATAGAGATATATAGAT
1 ATATAGATATATATATCT
* *
299743 CTATAGATATATAGATCT
1 ATATAGATATATATATCT
299761 ATAT
1 ATAT
299765 CTGCCCCCTA
Statistics
Matches: 30, Mismatches: 10, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (18 bp):
ATATAGATATATATATCT
Left flanking sequence: Indices 299207 -- 299706
TTGGCCTCATAAACTATAGATGTTGGGGCCTATAGATGACTGATGATATTACATAGATAATAGAA
TAGACTCGACCGGATCGACGTCCGATAGATAAGATTCTACGCCCCCCCCCCTCCCTCCAATATTG
GATTGGACCCTCTAAATAGATAGATAGGGCTGGGGGGGGTTGACCTACCTATATAGAGAGGGCCC
TATATCTCTATAACTTCCATCGGTTCATCAATATAGTGATCTGATCCTATATCGATTGATTGATT
ATCTCATTCTATGGTGTTGGTCAGGGCCCTCTACCTCTCTATATATCTTCAATAGATTGTGAGAT
TCTAGATACAATGTTTCTCTATTGTATCTGCCCTATCTCCCATAGAGATCTGGGGCTCCCCCCCT
ATCTCTATATGATATCTGCCGGCCCTGAACTCTCTCTGGGGGGGCTCGGATCCCATCTCTATATA
GGGGGGGTGAACAATCCGGGCGCCCAGATATATAGATAGGGTGGA
Right flanking sequence: Indices 299765 -- 300264
CTGCCCCCTATCTATAGATATGGCAGTGGTCTACTATATATGTCCCATCATGCAGTGGCCATATA
TTCTCTCTGCCTATATAGAGAACTGTCCCCCCCCTCTCTATAGATATGGCAGTGGTCTACTATAT
ATAGCTGGGAGTGGTCCCCCTATATAGATATATGGCAGTGGCCCTATCTATATATGGGTCCTAGT
GGCCATCTATCTATATCTGCCCCCCCTCTCTATAGATATGGCAGTGGTACAGATGAGTGGCCTAT
ATAGAGAACTGTCCCCCCCCTCTCTATAGATATGGCAGTGGTACAGATGAGTGGCCTATATAGAG
AACTGTCCCCCCCTCTCTATAGATATGGCAGAATAGAATCATTAGAGTGGGAGTGGTCCCATCAC
TAGTCTGTCAGATGAGTGGTCCCATCACTAGTCTGTCAGATGAGTGGTCCCATCATGTTACGTCC
CATCACTAGTATGTTATGTCATTAGAGTGGTCCCATCACTAGTTG
Found at i:299729 original size:10 final size:10
Alignment explanation
Indices: 299707--299764 Score: 56
Period size: 8 Copynumber: 6.4 Consensus size: 10
299697 ATAGGGTGGA
299707 ATATAGATCT
1 ATATAGATCT
299717 ATAT--ATCT
1 ATATAGATCT
**
299725 ATATAGAGAT
1 ATATAGATCT
299735 ATATAGATC-
1 ATATAGATCT
299744 -TATAGA--T
1 ATATAGATCT
299751 ATATAGATCT
1 ATATAGATCT
299761 ATAT
1 ATAT
299765 CTGCCCCCTA
Statistics
Matches: 38, Mismatches: 4, Indels: 12
0.70 0.07 0.22
Matches are distributed among these distances:
8 20 0.53
10 18 0.47
ACGTcount: A:0.43, C:0.07, G:0.10, T:0.40
Consensus pattern (10 bp):
ATATAGATCT
Left flanking sequence: Indices 299207 -- 299706
TTGGCCTCATAAACTATAGATGTTGGGGCCTATAGATGACTGATGATATTACATAGATAATAGAA
TAGACTCGACCGGATCGACGTCCGATAGATAAGATTCTACGCCCCCCCCCCTCCCTCCAATATTG
GATTGGACCCTCTAAATAGATAGATAGGGCTGGGGGGGGTTGACCTACCTATATAGAGAGGGCCC
TATATCTCTATAACTTCCATCGGTTCATCAATATAGTGATCTGATCCTATATCGATTGATTGATT
ATCTCATTCTATGGTGTTGGTCAGGGCCCTCTACCTCTCTATATATCTTCAATAGATTGTGAGAT
TCTAGATACAATGTTTCTCTATTGTATCTGCCCTATCTCCCATAGAGATCTGGGGCTCCCCCCCT
ATCTCTATATGATATCTGCCGGCCCTGAACTCTCTCTGGGGGGGCTCGGATCCCATCTCTATATA
GGGGGGGTGAACAATCCGGGCGCCCAGATATATAGATAGGGTGGA
Right flanking sequence: Indices 299765 -- 300264
CTGCCCCCTATCTATAGATATGGCAGTGGTCTACTATATATGTCCCATCATGCAGTGGCCATATA
TTCTCTCTGCCTATATAGAGAACTGTCCCCCCCCTCTCTATAGATATGGCAGTGGTCTACTATAT
ATAGCTGGGAGTGGTCCCCCTATATAGATATATGGCAGTGGCCCTATCTATATATGGGTCCTAGT
GGCCATCTATCTATATCTGCCCCCCCTCTCTATAGATATGGCAGTGGTACAGATGAGTGGCCTAT
ATAGAGAACTGTCCCCCCCCTCTCTATAGATATGGCAGTGGTACAGATGAGTGGCCTATATAGAG
AACTGTCCCCCCCTCTCTATAGATATGGCAGAATAGAATCATTAGAGTGGGAGTGGTCCCATCAC
TAGTCTGTCAGATGAGTGGTCCCATCACTAGTCTGTCAGATGAGTGGTCCCATCATGTTACGTCC
CATCACTAGTATGTTATGTCATTAGAGTGGTCCCATCACTAGTTG
Found at i:299949 original size:24 final size:24
Alignment explanation
Indices: 299861--299949 Score: 65
Period size: 24 Copynumber: 3.6 Consensus size: 24
299851 ACTGTCCCCC
* *
299861 CCCTCTCTATAGATATGGCAGTGG
1 CCCTATCTATATATATGGCAGTGG
* *
299885 -TCTA-CTATATATAGCTGGGAGTGG
1 CCCTATCTATATATA--TGGCAGTGG
* *
299909 TCCCCCTATATAGATATATGGCAGTGG
1 ---CCCTATCTATATATATGGCAGTGG
299936 CCCTATCTATATAT
1 CCCTATCTATATAT
299950 GGGTCCTAGT
Statistics
Matches: 48, Mismatches: 10, Indels: 14
0.67 0.14 0.19
Matches are distributed among these distances:
22 8 0.17
23 2 0.04
24 20 0.42
27 8 0.17
28 3 0.06
29 7 0.15
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (24 bp):
CCCTATCTATATATATGGCAGTGG
Left flanking sequence: Indices 299361 -- 299860
TAGGGCTGGGGGGGGTTGACCTACCTATATAGAGAGGGCCCTATATCTCTATAACTTCCATCGGT
TCATCAATATAGTGATCTGATCCTATATCGATTGATTGATTATCTCATTCTATGGTGTTGGTCAG
GGCCCTCTACCTCTCTATATATCTTCAATAGATTGTGAGATTCTAGATACAATGTTTCTCTATTG
TATCTGCCCTATCTCCCATAGAGATCTGGGGCTCCCCCCCTATCTCTATATGATATCTGCCGGCC
CTGAACTCTCTCTGGGGGGGCTCGGATCCCATCTCTATATAGGGGGGGTGAACAATCCGGGCGCC
CAGATATATAGATAGGGTGGAATATAGATCTATATATCTATATAGAGATATATAGATCTATAGAT
ATATAGATCTATATCTGCCCCCTATCTATAGATATGGCAGTGGTCTACTATATATGTCCCATCAT
GCAGTGGCCATATATTCTCTCTGCCTATATAGAGAACTGTCCCCC
Right flanking sequence: Indices 299950 -- 300449
GGGTCCTAGTGGCCATCTATCTATATCTGCCCCCCCTCTCTATAGATATGGCAGTGGTACAGATG
AGTGGCCTATATAGAGAACTGTCCCCCCCCTCTCTATAGATATGGCAGTGGTACAGATGAGTGGC
CTATATAGAGAACTGTCCCCCCCTCTCTATAGATATGGCAGAATAGAATCATTAGAGTGGGAGTG
GTCCCATCACTAGTCTGTCAGATGAGTGGTCCCATCACTAGTCTGTCAGATGAGTGGTCCCATCA
TGTTACGTCCCATCACTAGTATGTTATGTCATTAGAGTGGTCCCATCACTAGTTGGGCCTATATA
TATATAACTGTGACGTCCCATCATGTGATGCTCATCAGTCCCATCATGTTACGTCCCCCCGGGCA
ATGAAGCCCATATCTCTCCATAGCCCGGGAGGACGAGCATATATATAGATAGGGGCCATATAAAG
AATAGATATATCTTGACACCCGGGGAGAACCGGTAGAGTGTGCCG
Found at i:300051 original size:59 final size:58
Alignment explanation
Indices: 299979--300120 Score: 275
Period size: 59 Copynumber: 2.4 Consensus size: 58
299969 TCTATATCTG
299979 CCCCCCCTCTCTATAGATATGGCAGTGGTACAGATGAGTGGCCTATATAGAGAACTGT
1 CCCCCCCTCTCTATAGATATGGCAGTGGTACAGATGAGTGGCCTATATAGAGAACTGT
300037 CCCCCCCCTCTCTATAGATATGGCAGTGGTACAGATGAGTGGCCTATATAGAGAACTGT
1 -CCCCCCCTCTCTATAGATATGGCAGTGGTACAGATGAGTGGCCTATATAGAGAACTGT
300096 CCCCCCCTCTCTATAGATATGGCAG
1 CCCCCCCTCTCTATAGATATGGCAG
300121 AATAGAATCA
Statistics
Matches: 83, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
58 25 0.30
59 58 0.70
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (58 bp):
CCCCCCCTCTCTATAGATATGGCAGTGGTACAGATGAGTGGCCTATATAGAGAACTGT
Left flanking sequence: Indices 299479 -- 299978
GGTGTTGGTCAGGGCCCTCTACCTCTCTATATATCTTCAATAGATTGTGAGATTCTAGATACAAT
GTTTCTCTATTGTATCTGCCCTATCTCCCATAGAGATCTGGGGCTCCCCCCCTATCTCTATATGA
TATCTGCCGGCCCTGAACTCTCTCTGGGGGGGCTCGGATCCCATCTCTATATAGGGGGGGTGAAC
AATCCGGGCGCCCAGATATATAGATAGGGTGGAATATAGATCTATATATCTATATAGAGATATAT
AGATCTATAGATATATAGATCTATATCTGCCCCCTATCTATAGATATGGCAGTGGTCTACTATAT
ATGTCCCATCATGCAGTGGCCATATATTCTCTCTGCCTATATAGAGAACTGTCCCCCCCCTCTCT
ATAGATATGGCAGTGGTCTACTATATATAGCTGGGAGTGGTCCCCCTATATAGATATATGGCAGT
GGCCCTATCTATATATGGGTCCTAGTGGCCATCTATCTATATCTG
Right flanking sequence: Indices 300121 -- 300620
AATAGAATCATTAGAGTGGGAGTGGTCCCATCACTAGTCTGTCAGATGAGTGGTCCCATCACTAG
TCTGTCAGATGAGTGGTCCCATCATGTTACGTCCCATCACTAGTATGTTATGTCATTAGAGTGGT
CCCATCACTAGTTGGGCCTATATATATATAACTGTGACGTCCCATCATGTGATGCTCATCAGTCC
CATCATGTTACGTCCCCCCGGGCAATGAAGCCCATATCTCTCCATAGCCCGGGAGGACGAGCATA
TATATAGATAGGGGCCATATAAAGAATAGATATATCTTGACACCCGGGGAGAACCGGTAGAGTGT
GCCGGTAGAGTGTGTCGCGGTAGAGTGTGTCGCGGTAGAGTGTGTCCACCAATGCATGCCCATCT
AATCTCACCAATCTATCTGGTAGAGTCTGATCCGCCATATCTATATAGAGGGGTGTGTTGGTGAG
GTTGCGTCTATGACTTCTCTAATCCCCCCCCTCTCTATATAGATG
Found at i:300180 original size:28 final size:28
Alignment explanation
Indices: 300140--300209 Score: 140
Period size: 28 Copynumber: 2.5 Consensus size: 28
300130 ATTAGAGTGG
300140 GAGTGGTCCCATCACTAGTCTGTCAGAT
1 GAGTGGTCCCATCACTAGTCTGTCAGAT
300168 GAGTGGTCCCATCACTAGTCTGTCAGAT
1 GAGTGGTCCCATCACTAGTCTGTCAGAT
300196 GAGTGGTCCCATCA
1 GAGTGGTCCCATCA
300210 TGTTACGTCC
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.27
Consensus pattern (28 bp):
GAGTGGTCCCATCACTAGTCTGTCAGAT
Left flanking sequence: Indices 299640 -- 300139
GCTCGGATCCCATCTCTATATAGGGGGGGTGAACAATCCGGGCGCCCAGATATATAGATAGGGTG
GAATATAGATCTATATATCTATATAGAGATATATAGATCTATAGATATATAGATCTATATCTGCC
CCCTATCTATAGATATGGCAGTGGTCTACTATATATGTCCCATCATGCAGTGGCCATATATTCTC
TCTGCCTATATAGAGAACTGTCCCCCCCCTCTCTATAGATATGGCAGTGGTCTACTATATATAGC
TGGGAGTGGTCCCCCTATATAGATATATGGCAGTGGCCCTATCTATATATGGGTCCTAGTGGCCA
TCTATCTATATCTGCCCCCCCTCTCTATAGATATGGCAGTGGTACAGATGAGTGGCCTATATAGA
GAACTGTCCCCCCCCTCTCTATAGATATGGCAGTGGTACAGATGAGTGGCCTATATAGAGAACTG
TCCCCCCCTCTCTATAGATATGGCAGAATAGAATCATTAGAGTGG
Right flanking sequence: Indices 300210 -- 300709
TGTTACGTCCCATCACTAGTATGTTATGTCATTAGAGTGGTCCCATCACTAGTTGGGCCTATATA
TATATAACTGTGACGTCCCATCATGTGATGCTCATCAGTCCCATCATGTTACGTCCCCCCGGGCA
ATGAAGCCCATATCTCTCCATAGCCCGGGAGGACGAGCATATATATAGATAGGGGCCATATAAAG
AATAGATATATCTTGACACCCGGGGAGAACCGGTAGAGTGTGCCGGTAGAGTGTGTCGCGGTAGA
GTGTGTCGCGGTAGAGTGTGTCCACCAATGCATGCCCATCTAATCTCACCAATCTATCTGGTAGA
GTCTGATCCGCCATATCTATATAGAGGGGTGTGTTGGTGAGGTTGCGTCTATGACTTCTCTAATC
CCCCCCCTCTCTATATAGATGGGTCGATATCTATATAGGGCCGATATCTCAGTTGAGATATCTAT
ATAGGGCCAGATATGTAGATAGGGCCGCCCCCCCCTCTATATAGA
Found at i:300490 original size:17 final size:15
Alignment explanation
Indices: 300435--300491 Score: 100
Period size: 15 Copynumber: 3.9 Consensus size: 15
300425 CGGGGAGAAC
300435 CGGTAGAGTGTG-C-
1 CGGTAGAGTGTGTCG
300448 CGGTAGAGTGTGTCG
1 CGGTAGAGTGTGTCG
300463 CGGTAGAGTGTGTCG
1 CGGTAGAGTGTGTCG
300478 CGGTAGAGTGTGTC
1 CGGTAGAGTGTGTC
300492 CACCAATGCA
Statistics
Matches: 42, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
13 12 0.29
14 1 0.02
15 29 0.69
ACGTcount: A:0.14, C:0.14, G:0.46, T:0.26
Consensus pattern (15 bp):
CGGTAGAGTGTGTCG
Left flanking sequence: Indices 299935 -- 300434
GCCCTATCTATATATGGGTCCTAGTGGCCATCTATCTATATCTGCCCCCCCTCTCTATAGATATG
GCAGTGGTACAGATGAGTGGCCTATATAGAGAACTGTCCCCCCCCTCTCTATAGATATGGCAGTG
GTACAGATGAGTGGCCTATATAGAGAACTGTCCCCCCCTCTCTATAGATATGGCAGAATAGAATC
ATTAGAGTGGGAGTGGTCCCATCACTAGTCTGTCAGATGAGTGGTCCCATCACTAGTCTGTCAGA
TGAGTGGTCCCATCATGTTACGTCCCATCACTAGTATGTTATGTCATTAGAGTGGTCCCATCACT
AGTTGGGCCTATATATATATAACTGTGACGTCCCATCATGTGATGCTCATCAGTCCCATCATGTT
ACGTCCCCCCGGGCAATGAAGCCCATATCTCTCCATAGCCCGGGAGGACGAGCATATATATAGAT
AGGGGCCATATAAAGAATAGATATATCTTGACACCCGGGGAGAAC
Right flanking sequence: Indices 300492 -- 300991
CACCAATGCATGCCCATCTAATCTCACCAATCTATCTGGTAGAGTCTGATCCGCCATATCTATAT
AGAGGGGTGTGTTGGTGAGGTTGCGTCTATGACTTCTCTAATCCCCCCCCTCTCTATATAGATGG
GTCGATATCTATATAGGGCCGATATCTCAGTTGAGATATCTATATAGGGCCAGATATGTAGATAG
GGCCGCCCCCCCCTCTATATAGATGGGGGAGTCGAGTGCCAACTAGATATATAGATAGCCGCCCC
CCGGTATAGAGGAAGGCCTTTGCCTTTAATATATTGGTGTAGGTACCTTCGTATCACGTATATAA
TAGAATGGCGGATAGAATCAGTGAGGTGAGTGCCAACCCCTATCTATATGGCGTGAGTCCTGTAG
AGTTAGTTGCCAACCTGACCTGTATATCTGCCAACCTTCGTATCACGTATATAATAGAATGGCGG
ATAGAATCAGTGAGGTGAGTGCCAACCCCCTATCTATATATTGGA
Found at i:300678 original size:18 final size:18
Alignment explanation
Indices: 300655--300690 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
300645 ATCTCAGTTG
*
300655 AGATATCTATATAGGGCC
1 AGATATCTAGATAGGGCC
*
300673 AGATATGTAGATAGGGCC
1 AGATATCTAGATAGGGCC
300691 GCCCCCCCCT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.14, G:0.28, T:0.25
Consensus pattern (18 bp):
AGATATCTAGATAGGGCC
Left flanking sequence: Indices 300155 -- 300654
TAGTCTGTCAGATGAGTGGTCCCATCACTAGTCTGTCAGATGAGTGGTCCCATCATGTTACGTCC
CATCACTAGTATGTTATGTCATTAGAGTGGTCCCATCACTAGTTGGGCCTATATATATATAACTG
TGACGTCCCATCATGTGATGCTCATCAGTCCCATCATGTTACGTCCCCCCGGGCAATGAAGCCCA
TATCTCTCCATAGCCCGGGAGGACGAGCATATATATAGATAGGGGCCATATAAAGAATAGATATA
TCTTGACACCCGGGGAGAACCGGTAGAGTGTGCCGGTAGAGTGTGTCGCGGTAGAGTGTGTCGCG
GTAGAGTGTGTCCACCAATGCATGCCCATCTAATCTCACCAATCTATCTGGTAGAGTCTGATCCG
CCATATCTATATAGAGGGGTGTGTTGGTGAGGTTGCGTCTATGACTTCTCTAATCCCCCCCCTCT
CTATATAGATGGGTCGATATCTATATAGGGCCGATATCTCAGTTG
Right flanking sequence: Indices 300691 -- 301190
GCCCCCCCCTCTATATAGATGGGGGAGTCGAGTGCCAACTAGATATATAGATAGCCGCCCCCCGG
TATAGAGGAAGGCCTTTGCCTTTAATATATTGGTGTAGGTACCTTCGTATCACGTATATAATAGA
ATGGCGGATAGAATCAGTGAGGTGAGTGCCAACCCCTATCTATATGGCGTGAGTCCTGTAGAGTT
AGTTGCCAACCTGACCTGTATATCTGCCAACCTTCGTATCACGTATATAATAGAATGGCGGATAG
AATCAGTGAGGTGAGTGCCAACCCCCTATCTATATATTGGAGTGAGTAGTGAGTGCCAACCTATC
TATATAGTGAGTGCCAACCTATCTATCGAGTAGATATAGATATAAGGGGGGGGAGGGGCGGCTAT
ATCTAGTTTTTTTGGGAACCCATATCTATATAGAGGGGCTGCTCTCCCGATCTCCTCCCTCTACT
AATCTATATATATATATATATAGATATCTTATCTAAGATTCTCAG
Found at i:301027 original size:23 final size:23
Alignment explanation
Indices: 300997--301041 Score: 90
Period size: 23 Copynumber: 2.0 Consensus size: 23
300987 TTGGAGTGAG
300997 TAGTGAGTGCCAACCTATCTATA
1 TAGTGAGTGCCAACCTATCTATA
301020 TAGTGAGTGCCAACCTATCTAT
1 TAGTGAGTGCCAACCTATCTAT
301042 CGAGTAGATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (23 bp):
TAGTGAGTGCCAACCTATCTATA
Left flanking sequence: Indices 300497 -- 300996
ATGCATGCCCATCTAATCTCACCAATCTATCTGGTAGAGTCTGATCCGCCATATCTATATAGAGG
GGTGTGTTGGTGAGGTTGCGTCTATGACTTCTCTAATCCCCCCCCTCTCTATATAGATGGGTCGA
TATCTATATAGGGCCGATATCTCAGTTGAGATATCTATATAGGGCCAGATATGTAGATAGGGCCG
CCCCCCCCTCTATATAGATGGGGGAGTCGAGTGCCAACTAGATATATAGATAGCCGCCCCCCGGT
ATAGAGGAAGGCCTTTGCCTTTAATATATTGGTGTAGGTACCTTCGTATCACGTATATAATAGAA
TGGCGGATAGAATCAGTGAGGTGAGTGCCAACCCCTATCTATATGGCGTGAGTCCTGTAGAGTTA
GTTGCCAACCTGACCTGTATATCTGCCAACCTTCGTATCACGTATATAATAGAATGGCGGATAGA
ATCAGTGAGGTGAGTGCCAACCCCCTATCTATATATTGGAGTGAG
Right flanking sequence: Indices 301042 -- 301541
CGAGTAGATATAGATATAAGGGGGGGGAGGGGCGGCTATATCTAGTTTTTTTGGGAACCCATATC
TATATAGAGGGGCTGCTCTCCCGATCTCCTCCCTCTACTAATCTATATATATATATATATAGATA
TCTTATCTAAGATTCTCAGGGGCGACTCTCTCTATCCGGAGAATGCTGCCCTCTATATAGATATC
TGTCTGAGATCAAGAAGAGTCGTGTTCACCCGGCCTAGATATAGGGAGAAAGGGCCCCATATATA
GAGAGTGCCGGGGAACGGGGGGGCGTGCATCCCCATGTATATAGAGGGGCCCCCATGTATATAGA
GGGGGATCTATGGGGGTTTGTCCGATGCGTGCGGTTCATCACTGTTCCCTATATATAGATATGGC
GCCCCTATCTAGAGTTCTGTTCACGTCCATCTAACCGGTTCATCCAGAATCAATCTTATAATGGT
GGGACACTGCTCAGCTATGCCCTCTCATTTCGAGGGGGGGGGGGG
Found at i:301046 original size:19 final size:21
Alignment explanation
Indices: 301001--301046 Score: 51
Period size: 23 Copynumber: 2.2 Consensus size: 21
300991 AGTGAGTAGT
*
301001 GAGTGCCAACCTATCTATATAGT
1 GAGTGCCAACCTATC-ATATA-C
301024 GAGTGCCAACCTATC-TAT-C
1 GAGTGCCAACCTATCATATAC
301043 GAGT
1 GAGT
301047 AGATATAGAT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 4 0.18
21 3 0.14
23 15 0.68
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (21 bp):
GAGTGCCAACCTATCATATAC
Left flanking sequence: Indices 300501 -- 301000
ATGCCCATCTAATCTCACCAATCTATCTGGTAGAGTCTGATCCGCCATATCTATATAGAGGGGTG
TGTTGGTGAGGTTGCGTCTATGACTTCTCTAATCCCCCCCCTCTCTATATAGATGGGTCGATATC
TATATAGGGCCGATATCTCAGTTGAGATATCTATATAGGGCCAGATATGTAGATAGGGCCGCCCC
CCCCTCTATATAGATGGGGGAGTCGAGTGCCAACTAGATATATAGATAGCCGCCCCCCGGTATAG
AGGAAGGCCTTTGCCTTTAATATATTGGTGTAGGTACCTTCGTATCACGTATATAATAGAATGGC
GGATAGAATCAGTGAGGTGAGTGCCAACCCCTATCTATATGGCGTGAGTCCTGTAGAGTTAGTTG
CCAACCTGACCTGTATATCTGCCAACCTTCGTATCACGTATATAATAGAATGGCGGATAGAATCA
GTGAGGTGAGTGCCAACCCCCTATCTATATATTGGAGTGAGTAGT
Right flanking sequence: Indices 301047 -- 301546
AGATATAGATATAAGGGGGGGGAGGGGCGGCTATATCTAGTTTTTTTGGGAACCCATATCTATAT
AGAGGGGCTGCTCTCCCGATCTCCTCCCTCTACTAATCTATATATATATATATATAGATATCTTA
TCTAAGATTCTCAGGGGCGACTCTCTCTATCCGGAGAATGCTGCCCTCTATATAGATATCTGTCT
GAGATCAAGAAGAGTCGTGTTCACCCGGCCTAGATATAGGGAGAAAGGGCCCCATATATAGAGAG
TGCCGGGGAACGGGGGGGCGTGCATCCCCATGTATATAGAGGGGCCCCCATGTATATAGAGGGGG
ATCTATGGGGGTTTGTCCGATGCGTGCGGTTCATCACTGTTCCCTATATATAGATATGGCGCCCC
TATCTAGAGTTCTGTTCACGTCCATCTAACCGGTTCATCCAGAATCAATCTTATAATGGTGGGAC
ACTGCTCAGCTATGCCCTCTCATTTCGAGGGGGGGGGGGGTAGGC
Found at i:301357 original size:20 final size:20
Alignment explanation
Indices: 301332--301370 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
301322 GGGCGTGCAT
301332 CCCCATGTATATAGAGGGGC
1 CCCCATGTATATAGAGGGGC
301352 CCCCATGTATATAGAGGGG
1 CCCCATGTATATAGAGGGG
301371 GATCTATGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.26, C:0.23, G:0.31, T:0.21
Consensus pattern (20 bp):
CCCCATGTATATAGAGGGGC
Left flanking sequence: Indices 300832 -- 301331
AATCAGTGAGGTGAGTGCCAACCCCTATCTATATGGCGTGAGTCCTGTAGAGTTAGTTGCCAACC
TGACCTGTATATCTGCCAACCTTCGTATCACGTATATAATAGAATGGCGGATAGAATCAGTGAGG
TGAGTGCCAACCCCCTATCTATATATTGGAGTGAGTAGTGAGTGCCAACCTATCTATATAGTGAG
TGCCAACCTATCTATCGAGTAGATATAGATATAAGGGGGGGGAGGGGCGGCTATATCTAGTTTTT
TTGGGAACCCATATCTATATAGAGGGGCTGCTCTCCCGATCTCCTCCCTCTACTAATCTATATAT
ATATATATATAGATATCTTATCTAAGATTCTCAGGGGCGACTCTCTCTATCCGGAGAATGCTGCC
CTCTATATAGATATCTGTCTGAGATCAAGAAGAGTCGTGTTCACCCGGCCTAGATATAGGGAGAA
AGGGCCCCATATATAGAGAGTGCCGGGGAACGGGGGGGCGTGCAT
Right flanking sequence: Indices 301371 -- 301870
GATCTATGGGGGTTTGTCCGATGCGTGCGGTTCATCACTGTTCCCTATATATAGATATGGCGCCC
CTATCTAGAGTTCTGTTCACGTCCATCTAACCGGTTCATCCAGAATCAATCTTATAATGGTGGGA
CACTGCTCAGCTATGCCCTCTCATTTCGAGGGGGGGGGGGGTAGGCCAATATAGATTTCATATCT
GGGGCGGGGGAGAGCCGTTCCCCCATATCTATATAGGGGGCCCCAGCACTTATAGTTCAAGCCAT
ATAGAGAGGGGGCCCCATATCTCTATATCTGCCTATATATAGAACTGAGGCCGAGGGTATCGATA
GATCGAGGAGGGGGAGGGCCCCCTATCTATATATGGGGCACCCTATAGAGAGATATGATATGGCG
CCCCGGCCAGCGGCGCCCTATAGATATGGGTCTGGGCCCGCCAACTCGCCTAGCCGCCACCCCGT
ATATCTATATCTCGGCCCTCGGGGCCCTATAGATATATGGGGGCA
Found at i:304003 original size:14 final size:14
Alignment explanation
Indices: 303984--304011 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
303974 GGAGGGAGCG
303984 CCATATAGATATAT
1 CCATATAGATATAT
303998 CCATATAGATATAT
1 CCATATAGATATAT
304012 AGGCTCACCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.07, T:0.36
Consensus pattern (14 bp):
CCATATAGATATAT
Left flanking sequence: Indices 303484 -- 303983
GATCTCCCGCCCCGGGGGCCTATATATCTATCTCCATCTTGTCTTGAAATGTATCTCCTGCCATA
GATAGATATATAGGCAGTCTATTAATATATCTTCCCGCCCTATACTCTCTATATAGATGGGTCGA
GTGCCCCCATCTTGTCTATATCTAGGGCCTATATATCTATCTCCATCTCGAAATGAAAGGGATTC
GGTAGTCGGTCGAGTGCCTGCCCCGATGGGGGTAGTCCCCTATCTATTATCTCCATCTATCTCTA
TCTTATAGAGTTGCCCGCTATATAGAACTCTATAGGGGGGGGCCCCCAGAGAGATCTATATGTCG
TGTCGGTTCTCATCAATATATAGAGAGTATAGGGTGCAACTACAATAGAGAGGAGAGATTCTATC
TATCTAGATCTAGGGTGTCGAGTGAGATTTCGTTAGCCATATATAGATAGGGGGTTGGGCCCATA
TATAGAAGAAGGGGAGAGAGCATCTATCTATCTCAGGAGGGAGCG
Right flanking sequence: Indices 304012 -- 304511
AGGCTCACCTCATAGTAGTCAGTCCGAGTCATATATAGATGGGGCCATATAGAAATCACTATGGG
GCGACCGGGCTATATATCTGAACCAACTAGATCTCATATTGATCCGAGGAGATCGAGGGTCTATA
TAGTAATTCCCATATATAGATAGGGGAAGATATATAGAGTGTGGTCCCCTATCTATATATCTTCC
CTACTATAGTATAGATGATTCTAGATTCTGGATTCTATACAGCAGAGAAATCTATATGATAGGGG
GAGAGGGACTCGACTGTATATAGCTGGGAGAGGGCCCTATATAGATATATGGGCTGGGAGAGGGC
CCTATATAGATATATGGGCTGGGAGAGGGAGACTCTCTATAGTCGGTAGTCAGCACCCTATAGAT
CAGCCTCTATATAGGGGGGGGCCCAATGAAAAGTATCTCTCTATAGATTCCCCCCGCTAATCTAT
AGGCCTTCCTTTCAATCTATAGGGCTATAGGGGGCCATATCTACC
Found at i:304330 original size:30 final size:30
Alignment explanation
Indices: 304294--304365 Score: 144
Period size: 30 Copynumber: 2.4 Consensus size: 30
304284 ACTGTATATA
304294 GCTGGGAGAGGGCCCTATATAGATATATGG
1 GCTGGGAGAGGGCCCTATATAGATATATGG
304324 GCTGGGAGAGGGCCCTATATAGATATATGG
1 GCTGGGAGAGGGCCCTATATAGATATATGG
304354 GCTGGGAGAGGG
1 GCTGGGAGAGGG
304366 AGACTCTCTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 42 1.00
ACGTcount: A:0.25, C:0.12, G:0.42, T:0.21
Consensus pattern (30 bp):
GCTGGGAGAGGGCCCTATATAGATATATGG
Left flanking sequence: Indices 303794 -- 304293
GAGATCTATATGTCGTGTCGGTTCTCATCAATATATAGAGAGTATAGGGTGCAACTACAATAGAG
AGGAGAGATTCTATCTATCTAGATCTAGGGTGTCGAGTGAGATTTCGTTAGCCATATATAGATAG
GGGGTTGGGCCCATATATAGAAGAAGGGGAGAGAGCATCTATCTATCTCAGGAGGGAGCGCCATA
TAGATATATCCATATAGATATATAGGCTCACCTCATAGTAGTCAGTCCGAGTCATATATAGATGG
GGCCATATAGAAATCACTATGGGGCGACCGGGCTATATATCTGAACCAACTAGATCTCATATTGA
TCCGAGGAGATCGAGGGTCTATATAGTAATTCCCATATATAGATAGGGGAAGATATATAGAGTGT
GGTCCCCTATCTATATATCTTCCCTACTATAGTATAGATGATTCTAGATTCTGGATTCTATACAG
CAGAGAAATCTATATGATAGGGGGAGAGGGACTCGACTGTATATA
Right flanking sequence: Indices 304366 -- 304865
AGACTCTCTATAGTCGGTAGTCAGCACCCTATAGATCAGCCTCTATATAGGGGGGGGCCCAATGA
AAAGTATCTCTCTATAGATTCCCCCCGCTAATCTATAGGCCTTCCTTTCAATCTATAGGGCTATA
GGGGGCCATATCTACCATATCTATATATAGGGGGCGCCATATAGATCTATATAGGGCTCTCTATA
GTCGGCCCAAGATATAGAGAGATGGCCCTATCCCCTCTCTCTATATGGTGATTTATCATATAGAG
AGATCTATATGGAGGGCCCTATATCTATAACTATCCCCACATCCCAGTTCTCTATATAGGGCATC
TCCACCATTCATCTCATCTCCGCATTCGAGATCTATTCTATAGGGCTCTCATCTCCACATGCGGA
ACCACTCCTTTCCGAACTCTATATCTATGGGGCCATATCTCTAATCTGGGGGGGGGCATCTCCAC
AGATATATATGGAGGGCCATCCATCCCCACATTCGGGGTGATCAC
Found at i:304994 original size:23 final size:21
Alignment explanation
Indices: 304964--305018 Score: 74
Period size: 23 Copynumber: 2.5 Consensus size: 21
304954 GGCCTATATC
304964 TATCTATAGATAGGGTGTCGCCA
1 TATCTATAGATAGGGTGTCG--A
*
304987 TATCTATATATAGGGTGTCGA
1 TATCTATAGATAGGGTGTCGA
*
305008 TATATATAGAT
1 TATCTATAGAT
305019 GGGCCATCGC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
21 10 0.34
23 19 0.66
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (21 bp):
TATCTATAGATAGGGTGTCGA
Left flanking sequence: Indices 304464 -- 304963
TATAGGCCTTCCTTTCAATCTATAGGGCTATAGGGGGCCATATCTACCATATCTATATATAGGGG
GCGCCATATAGATCTATATAGGGCTCTCTATAGTCGGCCCAAGATATAGAGAGATGGCCCTATCC
CCTCTCTCTATATGGTGATTTATCATATAGAGAGATCTATATGGAGGGCCCTATATCTATAACTA
TCCCCACATCCCAGTTCTCTATATAGGGCATCTCCACCATTCATCTCATCTCCGCATTCGAGATC
TATTCTATAGGGCTCTCATCTCCACATGCGGAACCACTCCTTTCCGAACTCTATATCTATGGGGC
CATATCTCTAATCTGGGGGGGGGCATCTCCACAGATATATATGGAGGGCCATCCATCCCCACATT
CGGGGTGATCACTCGACCGCTGCACCCGCATATAGTTCTGGGCAGAGAGATCCCCTAGACTCTAA
ATAGAATTGTAGATCCCTATCTATAGATATCTGGGGGCCTATATC
Right flanking sequence: Indices 305019 -- 305518
GGGCCATCGCCATATCGCCATATATAGATAGGGCTCCCATATCTATAGAGAGGGGGGGGGTGGGG
GTGCCCCCTATCTATTATCTCAACTAACTCTCTATCTGGGCTCCCCCATATCATATCTATATAGA
GCCCCAATCTCCTATATCTGCACTCACCCGCCCCTGAATGAGACTGAGGGTGAGGGGGGGGGGCA
GTCATGTCCACGAGATTTCTGATCAATGCCATATAGAGATAGGGGAGGGTCCCATATAGAGATAG
GGGAGGGTCCCATATAGAGATAGGGGGGTAGATCCCCGAGAGGGGGTCGGCCCCTATCGTTCTAT
ATGGCAGTCATATGATCTAAACTTCCCCTCTCTCTCTATATCTATATCTCTCTCTATATCTATAT
ATATATCTATATCTCTCTCTCTCTCAGATATATATATCTATATCTATATAGATATATAGATATAT
CTCTCTCAGATATCTATATCTCTCTCTATATCTATATCTATATCT
Found at i:305314 original size:25 final size:23
Alignment explanation
Indices: 305242--305304 Score: 126
Period size: 23 Copynumber: 2.7 Consensus size: 23
305232 CTGATCAATG
305242 CCATATAGAGATAGGGGAGGGTC
1 CCATATAGAGATAGGGGAGGGTC
305265 CCATATAGAGATAGGGGAGGGTC
1 CCATATAGAGATAGGGGAGGGTC
305288 CCATATAGAGATAGGGG
1 CCATATAGAGATAGGGG
305305 GGTAGATCCC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.32, C:0.13, G:0.38, T:0.17
Consensus pattern (23 bp):
CCATATAGAGATAGGGGAGGGTC
Left flanking sequence: Indices 304742 -- 305241
TCTCCACATGCGGAACCACTCCTTTCCGAACTCTATATCTATGGGGCCATATCTCTAATCTGGGG
GGGGGCATCTCCACAGATATATATGGAGGGCCATCCATCCCCACATTCGGGGTGATCACTCGACC
GCTGCACCCGCATATAGTTCTGGGCAGAGAGATCCCCTAGACTCTAAATAGAATTGTAGATCCCT
ATCTATAGATATCTGGGGGCCTATATCTATCTATAGATAGGGTGTCGCCATATCTATATATAGGG
TGTCGATATATATAGATGGGCCATCGCCATATCGCCATATATAGATAGGGCTCCCATATCTATAG
AGAGGGGGGGGGTGGGGGTGCCCCCTATCTATTATCTCAACTAACTCTCTATCTGGGCTCCCCCA
TATCATATCTATATAGAGCCCCAATCTCCTATATCTGCACTCACCCGCCCCTGAATGAGACTGAG
GGTGAGGGGGGGGGGCAGTCATGTCCACGAGATTTCTGATCAATG
Right flanking sequence: Indices 305305 -- 305804
GGTAGATCCCCGAGAGGGGGTCGGCCCCTATCGTTCTATATGGCAGTCATATGATCTAAACTTCC
CCTCTCTCTCTATATCTATATCTCTCTCTATATCTATATATATATCTATATCTCTCTCTCTCTCA
GATATATATATCTATATCTATATAGATATATAGATATATCTCTCTCAGATATCTATATCTCTCTC
TATATCTATATCTATATCTCTCTCTCTCTCTATATCTATATCTATATCTCTCTCTATATCTATAT
CTCTCTCTATATCTCTCTCAGATAAGATATATATCTCTCTCTATATCTATATCTCTCTCTATATC
TATATAGGAGCCACCCCGGATATAGAGAGAGGAGCCACCCCTATCTATATCTATACTCTCTGGAG
CCCCGGATAGATATATATAGGAGCCACCCCACCCCTCTCTATATCTATACTCTCTATATAGGAGC
CACCCCACCCCTCTCTATCTATTTGAGCCCCTATCTCTCTATTTG
Found at i:305387 original size:6 final size:6
Alignment explanation
Indices: 305378--305634 Score: 144
Period size: 6 Copynumber: 43.2 Consensus size: 6
305368 CCCCTCTCTC
* * * * *
305378 TCTATA TCTATA TCTCTC TCTATA TCTATA TATATA TCTATA TCTCTC
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
* * * * * * **
305426 TCTCTC TCAGATA TATATA TCTATA TCTATA --TAGA TATATA GATATA
1 TCTATA TC-TATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
* * * * * * *
305473 TCTCTC TCAGATA TCTATA TCTCTC TCTATA TCTATA TCTATA TCTCTC
1 TCTATA TC-TATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
* * * * * *
305522 TCTCTC TCTATA TCTATA TCTATA TCTCTC TCTATA TCTATA TCTCTC
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
* * * * * * * *
305570 TCTATA TCTCTC TC-AGA T-AAGA TATATA TCTCTC TCTATA TCTATA
1 TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA TCTATA
* *
305616 TCTCTC TCTATA TCTATA T
1 TCTATA TCTATA TCTATA T
305635 AGGAGCCACC
Statistics
Matches: 188, Mismatches: 57, Indels: 12
0.73 0.22 0.05
Matches are distributed among these distances:
4 3 0.02
5 5 0.03
6 175 0.93
7 5 0.03
ACGTcount: A:0.27, C:0.23, G:0.02, T:0.47
Consensus pattern (6 bp):
TCTATA
Left flanking sequence: Indices 304878 -- 305377
CCCGCATATAGTTCTGGGCAGAGAGATCCCCTAGACTCTAAATAGAATTGTAGATCCCTATCTAT
AGATATCTGGGGGCCTATATCTATCTATAGATAGGGTGTCGCCATATCTATATATAGGGTGTCGA
TATATATAGATGGGCCATCGCCATATCGCCATATATAGATAGGGCTCCCATATCTATAGAGAGGG
GGGGGGTGGGGGTGCCCCCTATCTATTATCTCAACTAACTCTCTATCTGGGCTCCCCCATATCAT
ATCTATATAGAGCCCCAATCTCCTATATCTGCACTCACCCGCCCCTGAATGAGACTGAGGGTGAG
GGGGGGGGGCAGTCATGTCCACGAGATTTCTGATCAATGCCATATAGAGATAGGGGAGGGTCCCA
TATAGAGATAGGGGAGGGTCCCATATAGAGATAGGGGGGTAGATCCCCGAGAGGGGGTCGGCCCC
TATCGTTCTATATGGCAGTCATATGATCTAAACTTCCCCTCTCTC
Right flanking sequence: Indices 305635 -- 306134
AGGAGCCACCCCGGATATAGAGAGAGGAGCCACCCCTATCTATATCTATACTCTCTGGAGCCCCG
GATAGATATATATAGGAGCCACCCCACCCCTCTCTATATCTATACTCTCTATATAGGAGCCACCC
CACCCCTCTCTATCTATTTGAGCCCCTATCTCTCTATTTGACGAGGCGGGGGAGAGAGTATCGTC
TGGCCTGGCTAGAGACCTGGATAGAGAGGCCCGGGGGAAACATGTTATTCAGGTAGGAGCCCCCC
CCTCTATATCTCTCCGATCCCTCCTATCTATCTGATCTGGCCGGGGTCGTCGAACAAAAAGAGAT
AGGGGGGATGGATAGGGGGGGGGAGCGGCTGGAGTCGGAGTGATAACCCTCGTTTCCCTCCGCTT
CACTTCAGTGGGAGGCGGCCCCCTCTGGTGCAGCACTGAGCGAATAGATCTATATAGGGTCGCCA
TATAGATATAGGGGCGGATCGGGCCAGCTCCCGGGCGGGCTTCGC
Found at i:305395 original size:18 final size:18
Alignment explanation
Indices: 305372--305634 Score: 179
Period size: 18 Copynumber: 15.1 Consensus size: 18
305362 AAACTTCCCC
305372 TCTCTCTCTATATCTATA
1 TCTCTCTCTATATCTATA
305390 TCTCTCTCTATATCTATA
1 TCTCTCTCTATATCTATA
* * * * *
305408 TATATATCTATATCTCTC
1 TCTCTCTCTATATCTATA
*
305426 TCTCTCTC-AGA--TATA
1 TCTCTCTCTATATCTATA
* *
305441 --TATATCTATATCTATA
1 TCTCTCTCTATATCTATA
*** * **
305457 --TAGATATATAGATATA
1 TCTCTCTCTATATCTATA
*
305473 TCTCTCTCAGATATCTATA
1 TCTCTCTC-TATATCTATA
305492 TCTCTCTCTATATCTATA
1 TCTCTCTCTATATCTATA
* * * * * *
305510 TCTATATCTCTCTCTCTC
1 TCTCTCTCTATATCTATA
* *
305528 TCTATATCTATATCTATA
1 TCTCTCTCTATATCTATA
305546 TCTCTCTCTATATCTATA
1 TCTCTCTCTATATCTATA
305564 TCTCTCTCTATATC----
1 TCTCTCTCTATATCTATA
** * *
305578 TCTCTCAGATAAGATATATA
1 TCTCTC-TCT-ATATCTATA
305598 TCTCTCTCTATATCTATA
1 TCTCTCTCTATATCTATA
305616 TCTCTCTCTATATCTATA
1 TCTCTCTCTATATCTATA
305634 T
1 T
305635 AGGAGCCACC
Statistics
Matches: 187, Mismatches: 46, Indels: 24
0.73 0.18 0.09
Matches are distributed among these distances:
13 4 0.02
14 8 0.04
15 3 0.02
16 19 0.10
17 2 0.01
18 129 0.69
19 16 0.09
20 6 0.03
ACGTcount: A:0.27, C:0.24, G:0.02, T:0.47
Consensus pattern (18 bp):
TCTCTCTCTATATCTATA
Left flanking sequence: Indices 304872 -- 305371
GCTGCACCCGCATATAGTTCTGGGCAGAGAGATCCCCTAGACTCTAAATAGAATTGTAGATCCCT
ATCTATAGATATCTGGGGGCCTATATCTATCTATAGATAGGGTGTCGCCATATCTATATATAGGG
TGTCGATATATATAGATGGGCCATCGCCATATCGCCATATATAGATAGGGCTCCCATATCTATAG
AGAGGGGGGGGGTGGGGGTGCCCCCTATCTATTATCTCAACTAACTCTCTATCTGGGCTCCCCCA
TATCATATCTATATAGAGCCCCAATCTCCTATATCTGCACTCACCCGCCCCTGAATGAGACTGAG
GGTGAGGGGGGGGGGCAGTCATGTCCACGAGATTTCTGATCAATGCCATATAGAGATAGGGGAGG
GTCCCATATAGAGATAGGGGAGGGTCCCATATAGAGATAGGGGGGTAGATCCCCGAGAGGGGGTC
GGCCCCTATCGTTCTATATGGCAGTCATATGATCTAAACTTCCCC
Right flanking sequence: Indices 305635 -- 306134
AGGAGCCACCCCGGATATAGAGAGAGGAGCCACCCCTATCTATATCTATACTCTCTGGAGCCCCG
GATAGATATATATAGGAGCCACCCCACCCCTCTCTATATCTATACTCTCTATATAGGAGCCACCC
CACCCCTCTCTATCTATTTGAGCCCCTATCTCTCTATTTGACGAGGCGGGGGAGAGAGTATCGTC
TGGCCTGGCTAGAGACCTGGATAGAGAGGCCCGGGGGAAACATGTTATTCAGGTAGGAGCCCCCC
CCTCTATATCTCTCCGATCCCTCCTATCTATCTGATCTGGCCGGGGTCGTCGAACAAAAAGAGAT
AGGGGGGATGGATAGGGGGGGGGAGCGGCTGGAGTCGGAGTGATAACCCTCGTTTCCCTCCGCTT
CACTTCAGTGGGAGGCGGCCCCCTCTGGTGCAGCACTGAGCGAATAGATCTATATAGGGTCGCCA
TATAGATATAGGGGCGGATCGGGCCAGCTCCCGGGCGGGCTTCGC
Found at i:305800 original size:20 final size:20
Alignment explanation
Indices: 305767--305805 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
305757 AGCCACCCCA
*
305767 CCCCTCTCTATCTATTTGAG
1 CCCCTATCTATCTATTTGAG
*
305787 CCCCTATCTCTCTATTTGA
1 CCCCTATCTATCTATTTGA
305806 CGAGGCGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.15, C:0.36, G:0.08, T:0.41
Consensus pattern (20 bp):
CCCCTATCTATCTATTTGAG
Left flanking sequence: Indices 305267 -- 305766
ATATAGAGATAGGGGAGGGTCCCATATAGAGATAGGGGGGTAGATCCCCGAGAGGGGGTCGGCCC
CTATCGTTCTATATGGCAGTCATATGATCTAAACTTCCCCTCTCTCTCTATATCTATATCTCTCT
CTATATCTATATATATATCTATATCTCTCTCTCTCTCAGATATATATATCTATATCTATATAGAT
ATATAGATATATCTCTCTCAGATATCTATATCTCTCTCTATATCTATATCTATATCTCTCTCTCT
CTCTATATCTATATCTATATCTCTCTCTATATCTATATCTCTCTCTATATCTCTCTCAGATAAGA
TATATATCTCTCTCTATATCTATATCTCTCTCTATATCTATATAGGAGCCACCCCGGATATAGAG
AGAGGAGCCACCCCTATCTATATCTATACTCTCTGGAGCCCCGGATAGATATATATAGGAGCCAC
CCCACCCCTCTCTATATCTATACTCTCTATATAGGAGCCACCCCA
Right flanking sequence: Indices 305806 -- 306305
CGAGGCGGGGGAGAGAGTATCGTCTGGCCTGGCTAGAGACCTGGATAGAGAGGCCCGGGGGAAAC
ATGTTATTCAGGTAGGAGCCCCCCCCTCTATATCTCTCCGATCCCTCCTATCTATCTGATCTGGC
CGGGGTCGTCGAACAAAAAGAGATAGGGGGGATGGATAGGGGGGGGGAGCGGCTGGAGTCGGAGT
GATAACCCTCGTTTCCCTCCGCTTCACTTCAGTGGGAGGCGGCCCCCTCTGGTGCAGCACTGAGC
GAATAGATCTATATAGGGTCGCCATATAGATATAGGGGCGGATCGGGCCAGCTCCCGGGCGGGCT
TCGCTGGACTACTGATTCTGTTATACACGTGATACACCAGATATAGATAGGGGGCTCCCCCTATC
AGATTCTATCTGGGATCTGAGAGATAGGGGCCCTATATAGAGATCTTCTATCGAGTCGGAGGGCT
ATATGATAGACGAAACACTAACGAGAGACTAGGGGAGGGTCCCCA
Found at i:306563 original size:7 final size:7
Alignment explanation
Indices: 306553--306577 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
306543 GACTATAGCA
306553 ATAGTAG
1 ATAGTAG
306560 ATAGTAG
1 ATAGTAG
306567 ATAGTAG
1 ATAGTAG
306574 ATAG
1 ATAG
306578 CGGCCGCCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (7 bp):
ATAGTAG
Left flanking sequence: Indices 306053 -- 306552
TGCAGCACTGAGCGAATAGATCTATATAGGGTCGCCATATAGATATAGGGGCGGATCGGGCCAGC
TCCCGGGCGGGCTTCGCTGGACTACTGATTCTGTTATACACGTGATACACCAGATATAGATAGGG
GGCTCCCCCTATCAGATTCTATCTGGGATCTGAGAGATAGGGGCCCTATATAGAGATCTTCTATC
GAGTCGGAGGGCTATATGATAGACGAAACACTAACGAGAGACTAGGGGAGGGTCCCCACTAAGAT
ATATGGGGTGGGGCCTCCCGGTCCTCTCCTATTCTCCATTCCGGGAGGCGGCTGAACGAACTCTT
CCTCAGATAGAGAGATAGGGCCCAGATATCTAACTAATAAGATATAGAGGGGGTGGGGGGGGGCC
CCTATCTCTATATGGGTACCAGGTTCTTCACCCGTCAGCCACTATATAGATATGGGGACTTACCC
CATCGGGCCCATATCTATATAGAGGGGGGACTATCGACTATAGCA
Right flanking sequence: Indices 306578 -- 307077
CGGCCGCCCAATCATCGATACTTGGCAGATATATGAAATCCTCGCCATGCCCCATGCCATATAGA
GGAGGAGGAGGGAGGAGGATACGCAAAGGATCAGCCAATTAAACTCTCTATTCACGAAGGAATAT
ATAGGCCGGCCCGACTAGAGTTTAGTTTTCTTTCCCCGAGCCGGCCCGATCTGATGATATTGAAT
TGCCGATACCCCCCATCGGCCAGATATAGGGGTGCGCTCACAGATAGAAGAGATTTCCCCGATGG
AGGCCGGGGATAGATAAGGGGCTGGCGGCCTATATCTATCTATATGGGGTGGGGAACCGACCCCG
TCTGATCGGGTAGAGGGGAGGCGGAGGGGATTGGAGAGAAACGGTAGGTCGCTCTCTATATGGAT
ATGGGGAGCGTGGTTGGAAATCTATATGGGTAGCGGAGATGGAGAGGGGTGAGTCGAGTCGTATT
GATAACTCTCTCCATCTTCCTCCCAAGATATATAGGTATGAGGCC
Found at i:307205 original size:39 final size:38
Alignment explanation
Indices: 307144--307217 Score: 130
Period size: 39 Copynumber: 1.9 Consensus size: 38
307134 AACTCCGGGG
*
307144 CCTCCATCCCGTCAAATAGAGTTGATATGAGAGATCCT
1 CCTCCATCCCATCAAATAGAGTTGATATGAGAGATCCT
307182 CCTCCATCCCATCTAAATAGAGTTGATATGAGAGAT
1 CCTCCATCCCATC-AAATAGAGTTGATATGAGAGAT
307218 AGGGGCCCCA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
38 12 0.35
39 22 0.65
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (38 bp):
CCTCCATCCCATCAAATAGAGTTGATATGAGAGATCCT
Left flanking sequence: Indices 306644 -- 307143
GAGGAGGAGGGAGGAGGATACGCAAAGGATCAGCCAATTAAACTCTCTATTCACGAAGGAATATA
TAGGCCGGCCCGACTAGAGTTTAGTTTTCTTTCCCCGAGCCGGCCCGATCTGATGATATTGAATT
GCCGATACCCCCCATCGGCCAGATATAGGGGTGCGCTCACAGATAGAAGAGATTTCCCCGATGGA
GGCCGGGGATAGATAAGGGGCTGGCGGCCTATATCTATCTATATGGGGTGGGGAACCGACCCCGT
CTGATCGGGTAGAGGGGAGGCGGAGGGGATTGGAGAGAAACGGTAGGTCGCTCTCTATATGGATA
TGGGGAGCGTGGTTGGAAATCTATATGGGTAGCGGAGATGGAGAGGGGTGAGTCGAGTCGTATTG
ATAACTCTCTCCATCTTCCTCCCAAGATATATAGGTATGAGGCCGGGGGCAGTTCTCTATAGAGA
GGGCTCCCCCCCAGATCTCTATATAGGGCACCGTCAACTCCGGGG
Right flanking sequence: Indices 307218 -- 307717
AGGGGCCCCAGATAGATATAGACATTGGCATGATCGGGTATTCGGGCATTGAACCGGGCATATGA
GATCGAGAGCTTCGCCGCTCCCACCACCACCACCCATATAGGTATATAGGGGCCGCCGCCAGATA
TCTATCTAGATATAGGCATGGCCACGGCCGATCTATATATATGTATCTTCGAGAGTATCTCTCAT
TACTTGAACTTGAGCCTATATAGATATGGGGGGTATCTCTCTATCTTGCAGAGAGATATGGGGCC
GAAGCATCGCATCCCGGTATCTCGGAGGGGAGTCGAGCCTCTATATATCTTATCTTAGAGAGCGC
GGGGATCCGGGAGAGAAGATGGCCTTCCTGTGCCGGAATGTTGCAATTGTATACTTTATAGATAT
AGATATGCCCCCTATCTCTCTATCTGGGAGAGCGATTTCTCCAATATAGAGAGAAGGGGGCTCTC
TATATGTGATTGGATTTGATGATATAGCGGTGAATGGCCGACTCG
Found at i:308811 original size:5 final size:5
Alignment explanation
Indices: 308801--308825 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
308791 GCCGAGAGAA
308801 CCCAT CCCAT CCCAT CCCAT CCCAT
1 CCCAT CCCAT CCCAT CCCAT CCCAT
308826 ATAGAGATAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.60, G:0.00, T:0.20
Consensus pattern (5 bp):
CCCAT
Left flanking sequence: Indices 308301 -- 308800
CCTATAGAGTTTCATTGGCGCCCCTACCCCTATAGTTCAGGATATAGAGGGAGGGGGGCGACCCC
CTATCTATATATGCGGCCCTCTATATAGATATGGCAACGGGAGAGGACCCCCCTCTCTATAGAAT
ATATGGGGTCGAGGTCGCCGGCACCCTATATAGAATTATGGCGATCCCTATATAGATCTGGGGGG
CAGCCCTGAACTCTCTATATGCCTATATATCTCTATGGGGGAGAGGATTCAGATACTATTATAGG
GTAGGGCGTAGGGCACCGACTCTAGCGTTGGGCCCCTATATATCTATCTGGCCGGCCCCCTCTCT
ATACTCCCCCCATATAGAGAGGCCCCTATCTAGATATCTGACCATTCGCCATATCTATATAGAGG
GGAGAACGAGATAAGATCTAGTTGGCCCTACCCTATATATATCTAACTAGACCAGTGCGTCCTAT
ATCTCTAGAGCCCTATATAGAGAACTATCCCAGCGGCCGAGAGAA
Right flanking sequence: Indices 308826 -- 309325
ATAGAGATAGGGACTCTCCCAGCTTCGGATCCCAGCGGCCATATCATATAGAGAGGCTTCGATCC
CAGCGCAGCTGCCATATCATATAGAGAGGCTTCGATCCCCCTATCTATATAGAGAGATATGAGCC
GAGAGAACCCATATAGAGAGTAGAGGGGCTCTGCCATTGCCATATCTATATAGAGGGGCCAGCTG
CCATATAGAGGGGCCCCCCTGGAACTCTATAGGGGATATAGAAGGGCCAGCTGCCATGCCATATA
GATAGGGGCCCCCCCATATATAGATAGGGAGAGAGGGGCCATATATCTATATAGGGCAGGGCCCA
TATCTCTCTATTGGCATCAGTCGTATCACGTATAGAATTGGATAGAATTGGATAGTTCTATCTAT
ATCTGATAGAATAGGATGATGGATGATCCTCTCCCGTCTAACTCCCTATCCATATATCTAGTAAG
TGAGTGAGAACTCTAGATGGATGGTCGGCCATATCGGGCCGATCT
Done.