Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_069591
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 469769
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
File 2 of 7
Found at i:74253 original size:17 final size:17
Alignment explanation
Indices: 74231--74264 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
74221 ATTTCTTCAT
74231 GACCCCTATATCCATAG
1 GACCCCTATATCCATAG
74248 GACCCCTATATCCATAG
1 GACCCCTATATCCATAG
74265 TTGGCCCCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.35, G:0.12, T:0.24
Consensus pattern (17 bp):
GACCCCTATATCCATAG
Left flanking sequence: Indices 73731 -- 74230
TACCAATGTGATCCCCATTACAGATGGACAGATTCGTCCGGAAACAGAGCCCTTCTATCGCGGAA
TTAGACCGGCTATTAACGTTGGCTTACCTGTCAGTCGCGTTGGGTCCGCCGCTCAGTTGAAAGCT
ATGAAACAAGTACGCGGTAGTTCAAAACCCGAATCGGCGCAATACCGTGAAGTGGCCGCCTCTGC
TCAATCTGGGTCAGACCCTGATGCTGCGACTCAGGCACTATTAAATAGAGGTGCTAGGCTCACAG
AAGTTCCGAAACAACCGCAATATTCACCACTTCCTATTGAAAAACAAATCCTAGTTCTTCATGCT
GCTGTGAGAGGGTTCTGTGATCGAATGCCACTGGGCGAAATCTCCCGATATGAGAGAGCCATTTT
GAGTAGTCCAGATAACCAACCTGAATTGCCACACGACATCATAGAAAAGGGGAAGTTAACCAACG
AAATAGAGATGAAACCAGATGCTTCTTCAAAGGGCATTTCTTCAT
Right flanking sequence: Indices 74265 -- 74764
TTGGCCCCTCGGGTGAGGTAGGAAACATAACATGACATGACATTATTAGTGTAGTGCATGTGCAT
GTGCATGTGCATAGCACGTTGGATCTCAACCTATCTCTTGGTGGCAGCAAACTGGAATGGCCCGA
CTGCGTTGGATCCTTGGTGGCACCGGGAGGCCGCCCCGGAGATATAGAGAGAGATATAGAGAGAG
ATCTATATATAGGCGGGAACAAACTGGAATGGGGAGGGAGATATAGAGAGAGATATAGAGAGAGA
TATAGAATCTAGGCGGGAGGCCGTGGCTTTCCCCGAACAAGCCATAGATAGGGGGCCGGGCCCCC
AGAGAGATCTATAGGGTAGGGCTCCGATCTCTAGGGGACCCCTAGACAGATAGAGAGATAGATAT
TGGGCCCAGATAGATATAGAGGGGATAGATCCGGGGGGGCAGAGAGAGATCTATAGGGGCGGGCC
CCCCCCCACCCCATAGAGAGTTCTAGATAGGGCCCCCCCTATAGA
Found at i:74466 original size:14 final size:12
Alignment explanation
Indices: 74433--74461 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
74423 GGCCGCCCCG
74433 GAGATATAGAGA
1 GAGATATAGAGA
74445 GAGATATAGAGA
1 GAGATATAGAGA
74457 GAGAT
1 GAGAT
74462 CTATATATAG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.48, C:0.00, G:0.34, T:0.17
Consensus pattern (12 bp):
GAGATATAGAGA
Left flanking sequence: Indices 73933 -- 74432
GGGTCAGACCCTGATGCTGCGACTCAGGCACTATTAAATAGAGGTGCTAGGCTCACAGAAGTTCC
GAAACAACCGCAATATTCACCACTTCCTATTGAAAAACAAATCCTAGTTCTTCATGCTGCTGTGA
GAGGGTTCTGTGATCGAATGCCACTGGGCGAAATCTCCCGATATGAGAGAGCCATTTTGAGTAGT
CCAGATAACCAACCTGAATTGCCACACGACATCATAGAAAAGGGGAAGTTAACCAACGAAATAGA
GATGAAACCAGATGCTTCTTCAAAGGGCATTTCTTCATGACCCCTATATCCATAGGACCCCTATA
TCCATAGTTGGCCCCTCGGGTGAGGTAGGAAACATAACATGACATGACATTATTAGTGTAGTGCA
TGTGCATGTGCATGTGCATAGCACGTTGGATCTCAACCTATCTCTTGGTGGCAGCAAACTGGAAT
GGCCCGACTGCGTTGGATCCTTGGTGGCACCGGGAGGCCGCCCCG
Right flanking sequence: Indices 74462 -- 74961
CTATATATAGGCGGGAACAAACTGGAATGGGGAGGGAGATATAGAGAGAGATATAGAGAGAGATA
TAGAATCTAGGCGGGAGGCCGTGGCTTTCCCCGAACAAGCCATAGATAGGGGGCCGGGCCCCCAG
AGAGATCTATAGGGTAGGGCTCCGATCTCTAGGGGACCCCTAGACAGATAGAGAGATAGATATTG
GGCCCAGATAGATATAGAGGGGATAGATCCGGGGGGGCAGAGAGAGATCTATAGGGGCGGGCCCC
CCCCCACCCCATAGAGAGTTCTAGATAGGGCCCCCCCTATAGAGATCTCTATGGGAGCCCTATCT
AGAACTCTCTATGGGGGGGCCATATAGAGATAGGGGCCCGCCGGGCGGGCCTATAGGGGCCCCCT
ATAGAGAGATTGGAGATATTGGGCGGCTATATAGAGAGAGGGGGGCCCTCGATTTATCATTTATC
AATCGAGTGCCCCCACCCCGAACTATCTTATCTTCTAGTTCTAGA
Found at i:74514 original size:12 final size:12
Alignment explanation
Indices: 74497--74530 Score: 68
Period size: 12 Copynumber: 2.8 Consensus size: 12
74487 AATGGGGAGG
74497 GAGATATAGAGA
1 GAGATATAGAGA
74509 GAGATATAGAGA
1 GAGATATAGAGA
74521 GAGATATAGA
1 GAGATATAGA
74531 ATCTAGGCGG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.32, T:0.18
Consensus pattern (12 bp):
GAGATATAGAGA
Left flanking sequence: Indices 73997 -- 74496
CGAAACAACCGCAATATTCACCACTTCCTATTGAAAAACAAATCCTAGTTCTTCATGCTGCTGTG
AGAGGGTTCTGTGATCGAATGCCACTGGGCGAAATCTCCCGATATGAGAGAGCCATTTTGAGTAG
TCCAGATAACCAACCTGAATTGCCACACGACATCATAGAAAAGGGGAAGTTAACCAACGAAATAG
AGATGAAACCAGATGCTTCTTCAAAGGGCATTTCTTCATGACCCCTATATCCATAGGACCCCTAT
ATCCATAGTTGGCCCCTCGGGTGAGGTAGGAAACATAACATGACATGACATTATTAGTGTAGTGC
ATGTGCATGTGCATGTGCATAGCACGTTGGATCTCAACCTATCTCTTGGTGGCAGCAAACTGGAA
TGGCCCGACTGCGTTGGATCCTTGGTGGCACCGGGAGGCCGCCCCGGAGATATAGAGAGAGATAT
AGAGAGAGATCTATATATAGGCGGGAACAAACTGGAATGGGGAGG
Right flanking sequence: Indices 74531 -- 75030
ATCTAGGCGGGAGGCCGTGGCTTTCCCCGAACAAGCCATAGATAGGGGGCCGGGCCCCCAGAGAG
ATCTATAGGGTAGGGCTCCGATCTCTAGGGGACCCCTAGACAGATAGAGAGATAGATATTGGGCC
CAGATAGATATAGAGGGGATAGATCCGGGGGGGCAGAGAGAGATCTATAGGGGCGGGCCCCCCCC
CACCCCATAGAGAGTTCTAGATAGGGCCCCCCCTATAGAGATCTCTATGGGAGCCCTATCTAGAA
CTCTCTATGGGGGGGCCATATAGAGATAGGGGCCCGCCGGGCGGGCCTATAGGGGCCCCCTATAG
AGAGATTGGAGATATTGGGCGGCTATATAGAGAGAGGGGGGCCCTCGATTTATCATTTATCAATC
GAGTGCCCCCACCCCGAACTATCTTATCTTCTAGTTCTAGATAGGGGCCCCCCTATCGGCGCCCT
ATCTATATATGGGGGGCCCCCTATATAGATAGATAGGGGCCCCCT
Found at i:75150 original size:2 final size:2
Alignment explanation
Indices: 75143--75168 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
75133 CTGCCCAACC
75143 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
75169 GATCTCTATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 74643 -- 75142
AGAGATAGATATTGGGCCCAGATAGATATAGAGGGGATAGATCCGGGGGGGCAGAGAGAGATCTA
TAGGGGCGGGCCCCCCCCCACCCCATAGAGAGTTCTAGATAGGGCCCCCCCTATAGAGATCTCTA
TGGGAGCCCTATCTAGAACTCTCTATGGGGGGGCCATATAGAGATAGGGGCCCGCCGGGCGGGCC
TATAGGGGCCCCCTATAGAGAGATTGGAGATATTGGGCGGCTATATAGAGAGAGGGGGGCCCTCG
ATTTATCATTTATCAATCGAGTGCCCCCACCCCGAACTATCTTATCTTCTAGTTCTAGATAGGGG
CCCCCCTATCGGCGCCCTATCTATATATGGGGGGCCCCCTATATAGATAGATAGGGGCCCCCTAG
ACCTATAGGGGCGGGCCCCCAGATAGATTAATTCTCTCGGCCCCCCTCTCTCTGGATTATATGAC
TCCCCTATTCTCAGCGGCACTCCCAACCCCATCTCCTGCCCAACC
Right flanking sequence: Indices 75169 -- 75668
GATCTCTATATGGCCGGATATATGGGGGCAGCGTATAGAATCTATAGGGGTCCTCGGCCCCCTAT
ATAGATATAGAGTGAAGAGTGAGATATAGAGAGAGATAGAGAGAGAGAGACTGAAGAGTGAAGAG
TGAAGAGTGAGATCTATATAGAGATAGAGAGAGAGAGAGACTGAAGAGTGAGTCGAGATAGAGAG
AGAGATACAGATAGAGATAGTCGAGATATATATCTGAGAGAGGCAGATAGAGATAGAGAGGGGGC
CCTCTCTCTATATGGGGTCATTGGCGAACCATCCTACATTGGTGATTACCATCCCTGCCCTACTC
TCCAAACTGTGCTTACCATCACCATATCGTCATAGGGGCCCCCTCTCTCTATTCAATCTAGGGGG
GCCCCCTATCCAAACTATGGATTCCTTGATAGATACCAATCCCACCGGATCTATATCTCCCAATC
CCAATGGCTCGTGAACCCACTATCTCCCACTATCTCTTCTGGCTG
Found at i:75304 original size:53 final size:54
Alignment explanation
Indices: 75242--75349 Score: 173
Period size: 55 Copynumber: 2.0 Consensus size: 54
75232 ATATAGATAT
*
75242 AGAGTGAAGAGTGAGA-TATAGAGAGAGATAGAGAGAGAGAGACTGAAGAGTGA
1 AGAGTGAAGAGTGAGACTATAGAGAGAGAGAGAGAGAGAGAGACTGAAGAGTGA
* *
75295 AGAGTGAAGAGTGAGATCTATATAGAGATAGAGAGAGAGAGAGACTGAAGAGTGA
1 AGAGTGAAGAGTGAGA-CTATAGAGAGAGAGAGAGAGAGAGAGACTGAAGAGTGA
75350 GTCGAGATAG
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
53 16 0.32
55 34 0.68
ACGTcount: A:0.44, C:0.03, G:0.38, T:0.15
Consensus pattern (54 bp):
AGAGTGAAGAGTGAGACTATAGAGAGAGAGAGAGAGAGAGAGACTGAAGAGTGA
Left flanking sequence: Indices 74742 -- 75241
CTAGATAGGGCCCCCCCTATAGAGATCTCTATGGGAGCCCTATCTAGAACTCTCTATGGGGGGGC
CATATAGAGATAGGGGCCCGCCGGGCGGGCCTATAGGGGCCCCCTATAGAGAGATTGGAGATATT
GGGCGGCTATATAGAGAGAGGGGGGCCCTCGATTTATCATTTATCAATCGAGTGCCCCCACCCCG
AACTATCTTATCTTCTAGTTCTAGATAGGGGCCCCCCTATCGGCGCCCTATCTATATATGGGGGG
CCCCCTATATAGATAGATAGGGGCCCCCTAGACCTATAGGGGCGGGCCCCCAGATAGATTAATTC
TCTCGGCCCCCCTCTCTCTGGATTATATGACTCCCCTATTCTCAGCGGCACTCCCAACCCCATCT
CCTGCCCAACCTATATATATATATATATATATATATAGATCTCTATATGGCCGGATATATGGGGG
CAGCGTATAGAATCTATAGGGGTCCTCGGCCCCCTATATAGATAT
Right flanking sequence: Indices 75350 -- 75849
GTCGAGATAGAGAGAGAGATACAGATAGAGATAGTCGAGATATATATCTGAGAGAGGCAGATAGA
GATAGAGAGGGGGCCCTCTCTCTATATGGGGTCATTGGCGAACCATCCTACATTGGTGATTACCA
TCCCTGCCCTACTCTCCAAACTGTGCTTACCATCACCATATCGTCATAGGGGCCCCCTCTCTCTA
TTCAATCTAGGGGGGCCCCCTATCCAAACTATGGATTCCTTGATAGATACCAATCCCACCGGATC
TATATCTCCCAATCCCAATGGCTCGTGAACCCACTATCTCCCACTATCTCTTCTGGCTGGGCTGG
CCCTCGTGAACCCACTATCTCTTATGGCCCCCCCTACTCCAGATAGTTTGCCCACCCCCCCATAT
ATATAGAGGGGATCCATTCCCCCGACCCTCGATAGGGGGGGGGTGCCCCCGGGGCCCCGCCCCCC
GCCCCCCCCCCCCTCCCCCCTCCTATCTGATAGGTGGATAGGGGT
Found at i:78274 original size:14 final size:14
Alignment explanation
Indices: 78255--78282 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
78245 CAAACTCGAA
78255 CGAATGATAGAGAC
1 CGAATGATAGAGAC
78269 CGAATGATAGAGAC
1 CGAATGATAGAGAC
78283 TTGACTCGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.14, G:0.29, T:0.14
Consensus pattern (14 bp):
CGAATGATAGAGAC
Left flanking sequence: Indices 77755 -- 78254
AAGGGAAGCGGGAGGCCCAAGAGAAAAAGGGATTATCCTTGGCCCCCTACCTATATCTCTGAACA
TGAATGGGCGGATCCGACTATGCCTATAGCTATGCCCATATACATGCATGCCGATACCGGCCCCT
ATCTAATCTATAGATGGGATATGCCGCCGATCCTATATATCTATCCGGGGCAACTGCTATGGCGC
ATCACTTGAGAAGCGCATCACTCACTAGATATAGATAGACAGCCCCCTAGATATGGCAGCACCCT
ATATATAGATATGGCGTGTGACAGATACCTTCTATATAGATAGGGCCTTCCTTCAACCTACCACT
CCCCACTCCATAGAGAATGGAATGGAGGTTAGTTCGTTGCCACTGCCACTGTATTATATATGCTA
TATGCCCCCCATATCTCTATATAGGGCAATTTATAGGGGATCTATCTGGCAACTGGCAAAGATCA
GATCTGGCATCTGGCAAAGATATGGTCGTTGGTCCCAAACTCGAA
Right flanking sequence: Indices 78283 -- 78782
TTGACTCGACGAGATATATGGGGGGTATCGTGCCCACCCCTATTATTATATGGCATGACGCGCAT
CACTAATAGAATAGAATAGAATAGAATACCGACATCAGTGAGTAGAGGGGAAGGCCAGTATTCTT
CCCCGTCCGTAGCATTGTCGTATTCCTGCATATACAGATAGGGGCATCAGTGAGAGTGAGTAGAG
ATTCCTGTCCGTAGCATTGCCATATACAGATAGGGGCATCAGTGAGTAGAGAAGAAGGCAGTGGG
TAGAGTTGTATTCCGACATCAGTGAGTAGCCGCCCTCATATATACATATACATACCGACCTTCTC
TCTTTACCTCCCTTCTCTCAAGATATATAGATAGGGCGGACGAAGATATATATATAGGGCGGCAA
TCACGCTCTATCCTTACGCTACTCTCTCCCGACGGCCTACCCTAACTAGATATAGCTTGCCCTGA
TTGAGAACGGGGCACTCTATATAGGCTGCTCTCGACCGGTAGGGA
Found at i:78841 original size:5 final size:5
Alignment explanation
Indices: 78827--78861 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
78817 GGGTCGGCAC
78827 CCTGT CCCTGT CCTG- CCTGT CCTGT CCTGT CCTGT
1 CCTGT -CCTGT CCTGT CCTGT CCTGT CCTGT CCTGT
78862 ATATAGATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
4 4 0.14
5 19 0.68
6 5 0.18
ACGTcount: A:0.00, C:0.43, G:0.20, T:0.37
Consensus pattern (5 bp):
CCTGT
Left flanking sequence: Indices 78327 -- 78826
ATTATATGGCATGACGCGCATCACTAATAGAATAGAATAGAATAGAATACCGACATCAGTGAGTA
GAGGGGAAGGCCAGTATTCTTCCCCGTCCGTAGCATTGTCGTATTCCTGCATATACAGATAGGGG
CATCAGTGAGAGTGAGTAGAGATTCCTGTCCGTAGCATTGCCATATACAGATAGGGGCATCAGTG
AGTAGAGAAGAAGGCAGTGGGTAGAGTTGTATTCCGACATCAGTGAGTAGCCGCCCTCATATATA
CATATACATACCGACCTTCTCTCTTTACCTCCCTTCTCTCAAGATATATAGATAGGGCGGACGAA
GATATATATATAGGGCGGCAATCACGCTCTATCCTTACGCTACTCTCTCCCGACGGCCTACCCTA
ACTAGATATAGCTTGCCCTGATTGAGAACGGGGCACTCTATATAGGCTGCTCTCGACCGGTAGGG
ATAGGAGGGCGGCTATAGAGATCCTATATAGAGTCGGGTCGGCAC
Right flanking sequence: Indices 78862 -- 79361
ATATAGATATGGGCCTCTATACAGACAGATATGGCGACCCTATCTAACTATATGGGAGGACGGCC
CCTATCTATATATATATGGGGCACTCCCCCGACGCCTCCCTTCCCCCGATGGAGATGGGCCCTCT
CTCCATATATAGCTGTGAGCGATCGGGATAGAGTTTACTATAGCTGGGGCCCCCCTCTCTATAGA
TCTTATCTCTCTGGGGGCCCCCCCATATAGAGTTCTATATAGGCCAACAGTCTAGGCCCATATCA
TAGAGTTCTGTGGAGAGGATACGTAGGGGGACCGCCCGCCCAGATCTCTTCTCTAGAGATCCCCC
CTCTCTCTATATAGATCCTGAACTATAGGCTGTTGGGGCCCCCCATATAGATAGGGCATCCTCCA
TCCGGGGCCCTATATCTCCACCTATAGAGAGTTGGGTTGCCCCATATAGTTAGATAGGGCCCCAT
AGTTCTAGAGGGCCATATAGAGATAGGGGGTTGGCCCTCTATAGA
Found at i:79398 original size:12 final size:12
Alignment explanation
Indices: 79381--79503 Score: 118
Period size: 12 Copynumber: 10.9 Consensus size: 12
79371 TATCTCTCTA
79381 TCTCTCTATCTC
1 TCTCTCTATCTC
*
79393 TCTCTCTATATC
1 TCTCTCTATCTC
*
79405 TCTATCTATCTC
1 TCTCTCTATCTC
79417 TCTCTCTA----
1 TCTCTCTATCTC
*
79425 TATCTCTATCTC
1 TCTCTCTATCTC
*
79437 TCTCTCTATATC
1 TCTCTCTATCTC
79449 TCTCTCTA----
1 TCTCTCTATCTC
*
79457 TCTATCTATCTC
1 TCTCTCTATCTC
*
79469 TCTCTCTATATC
1 TCTCTCTATCTC
*
79481 TCTATCTATCTC
1 TCTCTCTATCTC
*
79493 TCTATCTATCT
1 TCTCTCTATCT
79504 ATAGATAGAT
Statistics
Matches: 91, Mismatches: 12, Indels: 16
0.76 0.10 0.13
Matches are distributed among these distances:
8 14 0.15
12 77 0.85
ACGTcount: A:0.15, C:0.34, G:0.00, T:0.50
Consensus pattern (12 bp):
TCTCTCTATCTC
Left flanking sequence: Indices 78881 -- 79380
TACAGACAGATATGGCGACCCTATCTAACTATATGGGAGGACGGCCCCTATCTATATATATATGG
GGCACTCCCCCGACGCCTCCCTTCCCCCGATGGAGATGGGCCCTCTCTCCATATATAGCTGTGAG
CGATCGGGATAGAGTTTACTATAGCTGGGGCCCCCCTCTCTATAGATCTTATCTCTCTGGGGGCC
CCCCCATATAGAGTTCTATATAGGCCAACAGTCTAGGCCCATATCATAGAGTTCTGTGGAGAGGA
TACGTAGGGGGACCGCCCGCCCAGATCTCTTCTCTAGAGATCCCCCCTCTCTCTATATAGATCCT
GAACTATAGGCTGTTGGGGCCCCCCATATAGATAGGGCATCCTCCATCCGGGGCCCTATATCTCC
ACCTATAGAGAGTTGGGTTGCCCCATATAGTTAGATAGGGCCCCATAGTTCTAGAGGGCCATATA
GAGATAGGGGGTTGGCCCTCTATAGAGAACTCATATATCTCTCTA
Right flanking sequence: Indices 79504 -- 80003
ATAGATAGATCTATATCTATATAGATAGATATAGATAGGGCCCCATAGTTCTAGAGGGCCATATA
GAGATAGGGGGTTGGGCCTTATCTATATATGGGGCCTAATCGTGGGGCCGAGCGGAGCCCCTATA
TAGAGAACTGGCCGGGATCTTGCATCCAACATGATTCCCGGGCCGCCCTCTATTAAAATAGAGAG
AGGGGGCCCTATCCCCTATCCCAATCTCAGCTTCCCTAACGGTATCTCTGGAGAGATTGGGGCAT
GTTAGATCTGGGTGCAGCTGGATACAGCATCCCAGTCCCCCATATGAGGAAGATAGCCCCCATCG
ATTCTCTTTGAATCTCAGCCCCTATCGGCCCCCTGGGGCGCCCTATCGGGGCCCTATATCTATAA
GGACGTGACTCTTGGGCACTGACCAGAAGATAGAGGGCCACCAATCTATATCTATATCTATATCT
ATATCTATATCTATATCTATATCTATATCTATATCTATATCTATA
Found at i:79398 original size:20 final size:20
Alignment explanation
Indices: 79373--79505 Score: 157
Period size: 20 Copynumber: 6.8 Consensus size: 20
79363 AACTCATATA
79373 TCTCTCTATCTCTCTATCTC
1 TCTCTCTATCTCTCTATCTC
* *
79393 TCTCTCTATATCTCTATCTA
1 TCTCTCTATCTCTCTATCTC
*
79413 TCTCTC--TCTCTATATCTC
1 TCTCTCTATCTCTCTATCTC
* *
79431 TATCTC--TCTCTCTATATC
1 TCTCTCTATCTCTCTATCTC
*
79449 TCTCTCTATCTATCTATCTC
1 TCTCTCTATCTCTCTATCTC
* *
79469 TCTCTCTATATCTCTATCTA
1 TCTCTCTATCTCTCTATCTC
*
79489 TCTCTCTATCTATCTAT
1 TCTCTCTATCTCTCTAT
79506 AGATAGATCT
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
18 29 0.31
20 66 0.69
ACGTcount: A:0.16, C:0.34, G:0.00, T:0.50
Consensus pattern (20 bp):
TCTCTCTATCTCTCTATCTC
Left flanking sequence: Indices 78873 -- 79372
GGCCTCTATACAGACAGATATGGCGACCCTATCTAACTATATGGGAGGACGGCCCCTATCTATAT
ATATATGGGGCACTCCCCCGACGCCTCCCTTCCCCCGATGGAGATGGGCCCTCTCTCCATATATA
GCTGTGAGCGATCGGGATAGAGTTTACTATAGCTGGGGCCCCCCTCTCTATAGATCTTATCTCTC
TGGGGGCCCCCCCATATAGAGTTCTATATAGGCCAACAGTCTAGGCCCATATCATAGAGTTCTGT
GGAGAGGATACGTAGGGGGACCGCCCGCCCAGATCTCTTCTCTAGAGATCCCCCCTCTCTCTATA
TAGATCCTGAACTATAGGCTGTTGGGGCCCCCCATATAGATAGGGCATCCTCCATCCGGGGCCCT
ATATCTCCACCTATAGAGAGTTGGGTTGCCCCATATAGTTAGATAGGGCCCCATAGTTCTAGAGG
GCCATATAGAGATAGGGGGTTGGCCCTCTATAGAGAACTCATATA
Right flanking sequence: Indices 79506 -- 80005
AGATAGATCTATATCTATATAGATAGATATAGATAGGGCCCCATAGTTCTAGAGGGCCATATAGA
GATAGGGGGTTGGGCCTTATCTATATATGGGGCCTAATCGTGGGGCCGAGCGGAGCCCCTATATA
GAGAACTGGCCGGGATCTTGCATCCAACATGATTCCCGGGCCGCCCTCTATTAAAATAGAGAGAG
GGGGCCCTATCCCCTATCCCAATCTCAGCTTCCCTAACGGTATCTCTGGAGAGATTGGGGCATGT
TAGATCTGGGTGCAGCTGGATACAGCATCCCAGTCCCCCATATGAGGAAGATAGCCCCCATCGAT
TCTCTTTGAATCTCAGCCCCTATCGGCCCCCTGGGGCGCCCTATCGGGGCCCTATATCTATAAGG
ACGTGACTCTTGGGCACTGACCAGAAGATAGAGGGCCACCAATCTATATCTATATCTATATCTAT
ATCTATATCTATATCTATATCTATATCTATATCTATATCTATATC
Found at i:79418 original size:32 final size:32
Alignment explanation
Indices: 79371--79503 Score: 140
Period size: 32 Copynumber: 4.2 Consensus size: 32
79361 AGAACTCATA
* * * *
79371 TATCTCTCTATCTCTCTATCTCTCTCTCTATA
1 TATCTCTCTATCTCTCTCTCTATATCTCTATC
* *
79403 TCTCTATCTATCTCTCTCTCTATATCTCTATC
1 TATCTCTCTATCTCTCTCTCTATATCTCTATC
* * * *
79435 TCTCTCTCTATATCTCTCTCTATCTATCTATC
1 TATCTCTCTATCTCTCTCTCTATATCTCTATC
* * * *
79467 TCTCTCTCTATATCTCTATCTATCTCTCTATC
1 TATCTCTCTATCTCTCTCTCTATATCTCTATC
79499 TATCT
1 TATCT
79504 ATAGATAGAT
Statistics
Matches: 88, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 88 1.00
ACGTcount: A:0.16, C:0.34, G:0.00, T:0.50
Consensus pattern (32 bp):
TATCTCTCTATCTCTCTCTCTATATCTCTATC
Left flanking sequence: Indices 78871 -- 79370
TGGGCCTCTATACAGACAGATATGGCGACCCTATCTAACTATATGGGAGGACGGCCCCTATCTAT
ATATATATGGGGCACTCCCCCGACGCCTCCCTTCCCCCGATGGAGATGGGCCCTCTCTCCATATA
TAGCTGTGAGCGATCGGGATAGAGTTTACTATAGCTGGGGCCCCCCTCTCTATAGATCTTATCTC
TCTGGGGGCCCCCCCATATAGAGTTCTATATAGGCCAACAGTCTAGGCCCATATCATAGAGTTCT
GTGGAGAGGATACGTAGGGGGACCGCCCGCCCAGATCTCTTCTCTAGAGATCCCCCCTCTCTCTA
TATAGATCCTGAACTATAGGCTGTTGGGGCCCCCCATATAGATAGGGCATCCTCCATCCGGGGCC
CTATATCTCCACCTATAGAGAGTTGGGTTGCCCCATATAGTTAGATAGGGCCCCATAGTTCTAGA
GGGCCATATAGAGATAGGGGGTTGGCCCTCTATAGAGAACTCATA
Right flanking sequence: Indices 79504 -- 80003
ATAGATAGATCTATATCTATATAGATAGATATAGATAGGGCCCCATAGTTCTAGAGGGCCATATA
GAGATAGGGGGTTGGGCCTTATCTATATATGGGGCCTAATCGTGGGGCCGAGCGGAGCCCCTATA
TAGAGAACTGGCCGGGATCTTGCATCCAACATGATTCCCGGGCCGCCCTCTATTAAAATAGAGAG
AGGGGGCCCTATCCCCTATCCCAATCTCAGCTTCCCTAACGGTATCTCTGGAGAGATTGGGGCAT
GTTAGATCTGGGTGCAGCTGGATACAGCATCCCAGTCCCCCATATGAGGAAGATAGCCCCCATCG
ATTCTCTTTGAATCTCAGCCCCTATCGGCCCCCTGGGGCGCCCTATCGGGGCCCTATATCTATAA
GGACGTGACTCTTGGGCACTGACCAGAAGATAGAGGGCCACCAATCTATATCTATATCTATATCT
ATATCTATATCTATATCTATATCTATATCTATATCTATATCTATA
Found at i:79516 original size:20 final size:20
Alignment explanation
Indices: 79493--79533 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
79483 TATCTATCTC
* *
79493 TCTATCTATCTATAGATAGA
1 TCTATATATATATAGATAGA
*
79513 TCTATATCTATATAGATAGA
1 TCTATATATATATAGATAGA
79533 T
1 T
79534 ATAGATAGGG
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.37, C:0.12, G:0.10, T:0.41
Consensus pattern (20 bp):
TCTATATATATATAGATAGA
Left flanking sequence: Indices 78993 -- 79492
TCCATATATAGCTGTGAGCGATCGGGATAGAGTTTACTATAGCTGGGGCCCCCCTCTCTATAGAT
CTTATCTCTCTGGGGGCCCCCCCATATAGAGTTCTATATAGGCCAACAGTCTAGGCCCATATCAT
AGAGTTCTGTGGAGAGGATACGTAGGGGGACCGCCCGCCCAGATCTCTTCTCTAGAGATCCCCCC
TCTCTCTATATAGATCCTGAACTATAGGCTGTTGGGGCCCCCCATATAGATAGGGCATCCTCCAT
CCGGGGCCCTATATCTCCACCTATAGAGAGTTGGGTTGCCCCATATAGTTAGATAGGGCCCCATA
GTTCTAGAGGGCCATATAGAGATAGGGGGTTGGCCCTCTATAGAGAACTCATATATCTCTCTATC
TCTCTATCTCTCTCTCTATATCTCTATCTATCTCTCTCTCTATATCTCTATCTCTCTCTCTATAT
CTCTCTCTATCTATCTATCTCTCTCTCTATATCTCTATCTATCTC
Right flanking sequence: Indices 79534 -- 80033
ATAGATAGGGCCCCATAGTTCTAGAGGGCCATATAGAGATAGGGGGTTGGGCCTTATCTATATAT
GGGGCCTAATCGTGGGGCCGAGCGGAGCCCCTATATAGAGAACTGGCCGGGATCTTGCATCCAAC
ATGATTCCCGGGCCGCCCTCTATTAAAATAGAGAGAGGGGGCCCTATCCCCTATCCCAATCTCAG
CTTCCCTAACGGTATCTCTGGAGAGATTGGGGCATGTTAGATCTGGGTGCAGCTGGATACAGCAT
CCCAGTCCCCCATATGAGGAAGATAGCCCCCATCGATTCTCTTTGAATCTCAGCCCCTATCGGCC
CCCTGGGGCGCCCTATCGGGGCCCTATATCTATAAGGACGTGACTCTTGGGCACTGACCAGAAGA
TAGAGGGCCACCAATCTATATCTATATCTATATCTATATCTATATCTATATCTATATCTATATCT
ATATCTATATCTATATCTATATCTATATCTATATCTATATCTATA
Found at i:79948 original size:6 final size:6
Alignment explanation
Indices: 79937--80033 Score: 194
Period size: 6 Copynumber: 16.2 Consensus size: 6
79927 AGGGCCACCA
79937 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT
1 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT
79985 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT
1 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT
80033 A
1 A
80034 GTTTTTTTGG
Statistics
Matches: 91, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 91 1.00
ACGTcount: A:0.34, C:0.16, G:0.00, T:0.49
Consensus pattern (6 bp):
ATCTAT
Left flanking sequence: Indices 79437 -- 79936
TCTCTCTATATCTCTCTCTATCTATCTATCTCTCTCTCTATATCTCTATCTATCTCTCTATCTAT
CTATAGATAGATCTATATCTATATAGATAGATATAGATAGGGCCCCATAGTTCTAGAGGGCCATA
TAGAGATAGGGGGTTGGGCCTTATCTATATATGGGGCCTAATCGTGGGGCCGAGCGGAGCCCCTA
TATAGAGAACTGGCCGGGATCTTGCATCCAACATGATTCCCGGGCCGCCCTCTATTAAAATAGAG
AGAGGGGGCCCTATCCCCTATCCCAATCTCAGCTTCCCTAACGGTATCTCTGGAGAGATTGGGGC
ATGTTAGATCTGGGTGCAGCTGGATACAGCATCCCAGTCCCCCATATGAGGAAGATAGCCCCCAT
CGATTCTCTTTGAATCTCAGCCCCTATCGGCCCCCTGGGGCGCCCTATCGGGGCCCTATATCTAT
AAGGACGTGACTCTTGGGCACTGACCAGAAGATAGAGGGCCACCA
Right flanking sequence: Indices 80034 -- 80533
GTTTTTTTGGCTGGGCCCATCTGGCTCTACCGGATTGGACACACGGTTCGGGCGGAAACCCCTAT
CGGCCCGGTCTACCAGATTGGAGACATTGGTGGAACCCGGATCCATATCTGACCGGTGACCTTCT
ATATAGAGGGCCCCCCCTCTATATAGAATGGGATCCCCAGATAGTTCAGATAGAACTCTAGGGGA
ATGCTGGTTCGGAACCATTAATCAGAGCGGCCCGGTCCTCGACATGGTCGACAACATCAAGAGAA
TAACGGTGAAGCAGTGATGCACTCGACCGCATCCCCTAGAATCTATATGGGCATTGATGCACTCG
ATCAATCACTCACACACCAGCCATATCTCTATAGGGGAGAGTGCTGACGATGTTGTTTATTTACG
ATGAAGCTCCGCGGATCATGCGCGGGGATGCTATAGGAGATTCTATATGGCGATCCGAAGCCCTC
TATAGTTCTATATGGGGACCAGAGGATGCCGATATGCCAACTCTA
Found at i:82227 original size:12 final size:12
Alignment explanation
Indices: 82210--82236 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
82200 ATACATATAC
82210 ATATAGAGAGAG
1 ATATAGAGAGAG
82222 ATATAGAGAGAG
1 ATATAGAGAGAG
82234 ATA
1 ATA
82237 GTAGGAACCG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.30, T:0.19
Consensus pattern (12 bp):
ATATAGAGAGAG
Left flanking sequence: Indices 81710 -- 82209
ATCCTATCTCGCCCGGATCCAGATAGTCTAAGATATAGAAGAGAGGGCCGCCCTATGGTTTCCAC
GGGGCATCCTCTATCGGCCATTCCAATCTTGAAGCCGTGGAACAGCCCGCTATAGGTTCTATAGG
GCCCCTCGAGTCACCTACTGTACCACCATCAAGGCCCCTACTCTCTATAGGGGAGGGCCCAGTCC
CTATAGATCTAAGTACCAGTTCCAGCTAGACCGATGTTTTCCATTTGCTCCGGCAAGGCACAGGG
GAACGCGAAGGCGAAGCTTAGGATTGACCGGGCCCTCCGCAGAATACTATTGAATCGGGCCGCAG
CCGGGGGACGCAGGACGCAGACACAGTATACTTACCAGATAGATCAGATCGGCCAGGGAGAGCAG
GCCCATAGATGAGATGGCGCCGACCCCACTATAGCAAGGATAGGGGCTCTCGATAGACCCGCCCA
CCGCACCGAAGCCCCCTATAGATATAGACTCCGACATACATATAC
Right flanking sequence: Indices 82237 -- 82736
GTAGGAACCGCCCCATCCCACCAGAGATACGGCTACCACCCCTACCTTTAGAGTGCAGGTAGGGA
CGCCTATAGAGAGTAGGGCGATGCCGGAACCAAACAACTAACACTACCCCTACCGCAACCATCAC
CCTAGCCCTAGCATATAGAGAACTAGATAGGGGGGGCAACCAAGGAACACCCTAGCCCCAGACCC
AAGGAACGATACCGGACTACTCCTATCTGACAAACAACCGGTACCCGCCTAACCCCAACCCACAG
ACGGATACCAACAGAATCCACACACCCCCAACCCTACCCAGCCCTATCTATCTGTTGCTTCTCGA
TTGAAAAGGAACCCCGACTCTATACTCTATATATACGCCTATCTATAGCTATTAGAAAGGGGTGG
GGGGGCCGGCCCGCCATTATAGTGCATATGAGAGAGATAAGATATATTAGCTGCGCTGCGCCCGG
GAAGCATGGCAGCAAGAAGATATATATATATATATATAGATATAT
Found at i:82718 original size:2 final size:2
Alignment explanation
Indices: 82711--82743 Score: 57
Period size: 2 Copynumber: 16.5 Consensus size: 2
82701 CAGCAAGAAG
*
82711 AT AT AT AT AT AT AT AT AT AG AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
82744 CTCAACTTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 82211 -- 82710
TATAGAGAGAGATATAGAGAGAGATAGTAGGAACCGCCCCATCCCACCAGAGATACGGCTACCAC
CCCTACCTTTAGAGTGCAGGTAGGGACGCCTATAGAGAGTAGGGCGATGCCGGAACCAAACAACT
AACACTACCCCTACCGCAACCATCACCCTAGCCCTAGCATATAGAGAACTAGATAGGGGGGGCAA
CCAAGGAACACCCTAGCCCCAGACCCAAGGAACGATACCGGACTACTCCTATCTGACAAACAACC
GGTACCCGCCTAACCCCAACCCACAGACGGATACCAACAGAATCCACACACCCCCAACCCTACCC
AGCCCTATCTATCTGTTGCTTCTCGATTGAAAAGGAACCCCGACTCTATACTCTATATATACGCC
TATCTATAGCTATTAGAAAGGGGTGGGGGGGCCGGCCCGCCATTATAGTGCATATGAGAGAGATA
AGATATATTAGCTGCGCTGCGCCCGGGAAGCATGGCAGCAAGAAG
Right flanking sequence: Indices 82744 -- 83243
CTCAACTTGCATGTGCCTCTATTCTATTTATTTCGCGGGTCTCAGTTTGATAGATAGTACCGTTG
GATCGCCGGTAGTTGGAATTAGGATTCGAAGGTGTCCCGGACTATCTCATAACAAATAGCACTCA
TCCCCCGATTACATTACTATAACGTTATATCGCCAATAACATCTCATCTCTCTTAGGTTGGTCGT
ATCGAGATAACAAAGAACCTTATACTTCTATCTAATACGATATGGGCTACGAGATATAGCTGGGG
GAGATGGTATAGGCTCTAGGTCTAGGAAGCCCAACAAAACAAAACAATATTTGCTTTCTATACGT
AACATTCTATTCCAGATACAAGTTGTATCCATCGGATACGGTATCTCCATCGTGTTACGTATAGA
ATCCGATCGATACGACTCGTCGGTGGAGATTCTAGCAAGATCATTAGGTCGAGCGCACCATATAT
AGATAGGGGGACCTCCATAGTTCCCCGTGAACCCCGGCCTCTCCC
Found at i:83647 original size:5 final size:5
Alignment explanation
Indices: 83637--83719 Score: 166
Period size: 5 Copynumber: 16.6 Consensus size: 5
83627 GCGGGTTTCT
83637 GTCCA GTCCA GTCCA GTCCA GTCCA GTCCA GTCCA GTCCA GTCCA GTCCA
1 GTCCA GTCCA GTCCA GTCCA GTCCA GTCCA GTCCA GTCCA GTCCA GTCCA
83687 GTCCA GTCCA GTCCA GTCCA GTCCA GTCCA GTC
1 GTCCA GTCCA GTCCA GTCCA GTCCA GTCCA GTC
83720 TATTAGTAGA
Statistics
Matches: 78, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 78 1.00
ACGTcount: A:0.19, C:0.40, G:0.20, T:0.20
Consensus pattern (5 bp):
GTCCA
Left flanking sequence: Indices 83137 -- 83636
CGATCGATACGACTCGTCGGTGGAGATTCTAGCAAGATCATTAGGTCGAGCGCACCATATATAGA
TAGGGGGACCTCCATAGTTCCCCGTGAACCCCGGCCTCTCCCTCCCAATGAACCAGCTTTTGTTT
TGTAATACTCATCATCATACTCTCCCACCGGCTTTCCCAATAGCAGCATACCCAGTTATAGCCCT
ATAGTTCTCTGGGGGGGGGCGGCCACCCTGACTGCCGGCACTTCCTGAATATTCCATTGTCGTGT
GTGAAGACATGTTCCCGACCGATCAGCACACCACACGAACCTCTCAGATATATAGAGAGGGCGGC
CCTATATATAGAGATCTGAACTCTACTGATGATCTGATCTATATATAGGGCAGGGCGGCAGATAG
GGCTAACCCCTAACCGTATATATAGATAGGGGACCCAGGCCCCTACCTCATCTATATATGATATA
CAGGGCCTACCCGACCGAGATCTATATAGATAGGGGCGGGTTTCT
Right flanking sequence: Indices 83720 -- 84219
TATTAGTAGAGCGTAGAGCGTAGAGCGTAGAGCCCGGGTCGATGGAATAGGTATATAGGGTAGGG
GCCCGCCTATCGGCCCAACTGACTAGAAATCTATGCGCATCAATGCGGATCTACCGGTGCTGGAG
TCGAGATAGTTGCCGGATCGGCAGCTAGATAGATATCTATAGGGGCCCCTCGACCCCGCCCTATA
GATATATAGATGGCGATAGGACCCCTATAGCTATATGGGGGAGAGGAGCCCCGACTACTATACTC
GTTGTCCTCAACTCCCTACTGATCGGCGGCCTATATATCTATCTCAACACCATACGGACAGGGAT
GATCCCCCCACCCCGAACTATCTTCTAGATAGGGGCCATCGGCGGCGGATGTGAACACCACACAT
CCGCCGGGCCCCCGGCCGAGGAATCTAATCTATATATGGGTGATGGGTGACCCCCAGTTAGATAT
ATAGGGCGTGCCGGGCCACCGGATGGCCGGTGACCCAACCGTTGA
Found at i:83737 original size:7 final size:7
Alignment explanation
Indices: 83725--83752 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
83715 CAGTCTATTA
83725 GTAGAGC
1 GTAGAGC
83732 GTAGAGC
1 GTAGAGC
83739 GTAGAGC
1 GTAGAGC
83746 GTAGAGC
1 GTAGAGC
83753 CCGGGTCGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.29, C:0.14, G:0.43, T:0.14
Consensus pattern (7 bp):
GTAGAGC
Left flanking sequence: Indices 83225 -- 83724
GTGAACCCCGGCCTCTCCCTCCCAATGAACCAGCTTTTGTTTTGTAATACTCATCATCATACTCT
CCCACCGGCTTTCCCAATAGCAGCATACCCAGTTATAGCCCTATAGTTCTCTGGGGGGGGGCGGC
CACCCTGACTGCCGGCACTTCCTGAATATTCCATTGTCGTGTGTGAAGACATGTTCCCGACCGAT
CAGCACACCACACGAACCTCTCAGATATATAGAGAGGGCGGCCCTATATATAGAGATCTGAACTC
TACTGATGATCTGATCTATATATAGGGCAGGGCGGCAGATAGGGCTAACCCCTAACCGTATATAT
AGATAGGGGACCCAGGCCCCTACCTCATCTATATATGATATACAGGGCCTACCCGACCGAGATCT
ATATAGATAGGGGCGGGTTTCTGTCCAGTCCAGTCCAGTCCAGTCCAGTCCAGTCCAGTCCAGTC
CAGTCCAGTCCAGTCCAGTCCAGTCCAGTCCAGTCCAGTCTATTA
Right flanking sequence: Indices 83753 -- 84252
CCGGGTCGATGGAATAGGTATATAGGGTAGGGGCCCGCCTATCGGCCCAACTGACTAGAAATCTA
TGCGCATCAATGCGGATCTACCGGTGCTGGAGTCGAGATAGTTGCCGGATCGGCAGCTAGATAGA
TATCTATAGGGGCCCCTCGACCCCGCCCTATAGATATATAGATGGCGATAGGACCCCTATAGCTA
TATGGGGGAGAGGAGCCCCGACTACTATACTCGTTGTCCTCAACTCCCTACTGATCGGCGGCCTA
TATATCTATCTCAACACCATACGGACAGGGATGATCCCCCCACCCCGAACTATCTTCTAGATAGG
GGCCATCGGCGGCGGATGTGAACACCACACATCCGCCGGGCCCCCGGCCGAGGAATCTAATCTAT
ATATGGGTGATGGGTGACCCCCAGTTAGATATATAGGGCGTGCCGGGCCACCGGATGGCCGGTGA
CCCAACCGTTGAACCTGCACCCGCTGAACCGTCGGCCCTGAATGA
Found at i:85662 original size:13 final size:13
Alignment explanation
Indices: 85644--85673 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
85634 GATCCCCTCA
85644 TGGGTATGAGGAT
1 TGGGTATGAGGAT
85657 TGGGTATGAGGAT
1 TGGGTATGAGGAT
85670 TGGG
1 TGGG
85674 CCCTATCCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.50, T:0.30
Consensus pattern (13 bp):
TGGGTATGAGGAT
Left flanking sequence: Indices 85144 -- 85643
ATATCTCTATGGGGTCGAGACAGTTGTATATAGAGGGGGGCACCATATCTAGAATAGAGAATAGA
GGGGTGGGGGCACCACATGATGCATCCATTCTATCCGCCATTCTCTATATCCAAAGGAGTGATAC
AACCAGTCACAGTCATTGGTCTATATCCATATAGAGAGTTCGATGGGTGCCCAGATAGTTCAGGG
GTGCCCAGTAGAAGGATGAAGTCGGAGCCGTGGGATCTATCTATATATAGATATAGATATGGGTG
GGAGTAGAGGGATTCAGTCGTCAGCCCTCTCTATATATCTGGCCTATCGGGTCGTTGGTTGAAGG
ATTGGGTGCCGGATTGGAGTGGGAGTGTCGGGCCGATTCTAGATATGGGCCGTTGGCCATATCTA
GATAGGGGGTTGGGAGTCTGAGGATGGGAAGGAGAATCACTAATCAGTTTCGACGGGCCCTCTCT
ATATCTTTTCGAATCACTGATCCGTTTCGGCACTCGATCCCCTCA
Right flanking sequence: Indices 85674 -- 86173
CCCTATCCAACTCAGATTGGGTATGAGGGCCGGTATTGAGATTGGGCCAGATAGAACTATAGGGC
AGATTGGCCCTATCTAGATCTATATATGGGGGTGAGATATAATATAGATAGGGGGGCCCTATCTA
TAGATCTGGGGGTGAGATATAATATAGATAGGGGGGATTGGGTATTGAGATTCGGGATTGGGCCC
TATCTCTATATGTCTTTGGTATGGGTATTGAGATTCGGGATTGGGCCCTATCTCTATATGGGCCA
TAGCGGGGAAGCCGGGGAGTAAAGCCGAGGGGGGAGGCAGGCACCCTCTCATATCTGTTCTCGAG
GGCACCCCGAATGGCATAGACTCCGACCGGAGGAAAGGAACCCCACCGACCCCTTCCTCTAATAC
AAACCAAACTGGATTGATCTGCTAGATCGATCTCTATTCTATATGCCCTCTATATCTATCTGGCA
AACCCCTTCTCTAGAGTTCAGTTCAGGGCCGACCCAACTCTCGAG
Found at i:85839 original size:24 final size:23
Alignment explanation
Indices: 85766--85838 Score: 78
Period size: 23 Copynumber: 3.2 Consensus size: 23
85756 ATCTATATAT
85766 GGGGGTGAGATATAATATAGATA
1 GGGGGTGAGATATAATATAGATA
*** * *
85789 GGGGG-GCCCTAT-CTATAGATCT
1 GGGGGTGAGATATAATATAGAT-A
85811 GGGGGTGAGATATAATATAGATA
1 GGGGGTGAGATATAATATAGATA
85834 GGGGG
1 GGGGG
85839 GATTGGGTAT
Statistics
Matches: 37, Mismatches: 10, Indels: 6
0.70 0.19 0.11
Matches are distributed among these distances:
21 7 0.19
22 9 0.24
23 14 0.38
24 7 0.19
ACGTcount: A:0.30, C:0.07, G:0.38, T:0.25
Consensus pattern (23 bp):
GGGGGTGAGATATAATATAGATA
Left flanking sequence: Indices 85266 -- 85765
AGTGATACAACCAGTCACAGTCATTGGTCTATATCCATATAGAGAGTTCGATGGGTGCCCAGATA
GTTCAGGGGTGCCCAGTAGAAGGATGAAGTCGGAGCCGTGGGATCTATCTATATATAGATATAGA
TATGGGTGGGAGTAGAGGGATTCAGTCGTCAGCCCTCTCTATATATCTGGCCTATCGGGTCGTTG
GTTGAAGGATTGGGTGCCGGATTGGAGTGGGAGTGTCGGGCCGATTCTAGATATGGGCCGTTGGC
CATATCTAGATAGGGGGTTGGGAGTCTGAGGATGGGAAGGAGAATCACTAATCAGTTTCGACGGG
CCCTCTCTATATCTTTTCGAATCACTGATCCGTTTCGGCACTCGATCCCCTCATGGGTATGAGGA
TTGGGTATGAGGATTGGGCCCTATCCAACTCAGATTGGGTATGAGGGCCGGTATTGAGATTGGGC
CAGATAGAACTATAGGGCAGATTGGCCCTATCTAGATCTATATAT
Right flanking sequence: Indices 85839 -- 86338
GATTGGGTATTGAGATTCGGGATTGGGCCCTATCTCTATATGTCTTTGGTATGGGTATTGAGATT
CGGGATTGGGCCCTATCTCTATATGGGCCATAGCGGGGAAGCCGGGGAGTAAAGCCGAGGGGGGA
GGCAGGCACCCTCTCATATCTGTTCTCGAGGGCACCCCGAATGGCATAGACTCCGACCGGAGGAA
AGGAACCCCACCGACCCCTTCCTCTAATACAAACCAAACTGGATTGATCTGCTAGATCGATCTCT
ATTCTATATGCCCTCTATATCTATCTGGCAAACCCCTTCTCTAGAGTTCAGTTCAGGGCCGACCC
AACTCTCGAGGCTCGGCTGGGGTTCGGAAAGGGAAAGCACACCTTCCTCACCCTCCAGATAGAGA
TATAGGGGCGGGTGAGATCCCCCCTCTCTCTCTCTATATTCAACCTCATCCTCATTATCTCATTT
CTATGGCAATCGAGTCCCTCCCCCCCCCCCCCCCCTCCCTGAACT
Found at i:87029 original size:12 final size:12
Alignment explanation
Indices: 87009--87056 Score: 87
Period size: 12 Copynumber: 4.0 Consensus size: 12
86999 TCTTTATTAT
87009 CCAGTCAGGTGG
1 CCAGTCAGGTGG
*
87021 CCGGTCAGGTGG
1 CCAGTCAGGTGG
87033 CCAGTCAGGTGG
1 CCAGTCAGGTGG
87045 CCAGTCAGGTGG
1 CCAGTCAGGTGG
87057 TTCTCCCACC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 34 1.00
ACGTcount: A:0.15, C:0.25, G:0.44, T:0.17
Consensus pattern (12 bp):
CCAGTCAGGTGG
Left flanking sequence: Indices 86509 -- 87008
CGTAATAAACTCCTTCTCGTTGCGGCGGAATGGAAGTCTGATTCAAACGACCAGGTACAGCATCG
CATTTGACCCCTAGGGAAGGGACAGCCCGACTATGAAGTGCATCAGCAGATGTTATAATCATACG
TGGATGAGTTCTGGCTGGTACAACCACTCGATTGTCCACTTCCGATAAACGCGATTGACCCAGTT
CTGGATCATCCTCTGGGATCATATAACTGTCAAAAGTTAGTGACTGTTCATCGGAACTGTTATAG
TCTGAATACTCATAAGGTTGGGTCGACGCCCCCCCCCCTCCCTCCAGAAAATCTAGGGGAGAAAG
TCGCCCCCCAAACTGTACTTGCAAGTTTCCCCGCGAACAGCTCTCCGCGCTTATCTCTTATCATT
GACACTATGACATGGCACAACAGTACAGTACTATCATATCACAATTCCGAGTGAATGAGAACGGT
ACTATCCTATCTATGGCACATCGCGTCCGGTCCAGTCTTTATTAT
Right flanking sequence: Indices 87057 -- 87556
TTCTCCCACCCCTATCTAGTGAACTAAACTATATTGTCATCATGAACATGACATAATAGGGATAG
GGGCATGCATATGACATGATAGGGGCATGCATGTGATGCCCTCCAGTGGAGTGAGTGATGCCATA
ACCACGCTGCCCTATCCACTACCTATTCCATCCCATCGCCTAGCCGGCCCATGCCAGACTATAGT
GAAGTGATCTGGACAGTGATGCAGTCCATACTATATACGTAACATGATGATTCATCGCCATGCGT
ATGGTTCACACTATACACGTAACATGAACATGAAACAAAAGGAATACTGGAATGAGACGAATGCC
ATATATATAGAGGGGCTGGTGACCAATATAGATCTATATATCTATATAGATATAGAATAGAGATA
TATGAGAACCCGAGGCCGCCCTATCCCCCTATCTAAATCTCTAGTTCGGGGTGGGGGCTCTCCGA
GAACAGGCCGACTGGGATTAGCAGCCAACTCCAACTAGATAGTCT
Found at i:88002 original size:23 final size:24
Alignment explanation
Indices: 87975--88039 Score: 87
Period size: 27 Copynumber: 2.6 Consensus size: 24
87965 AGACTCTATA
87975 TATCTATATCTGGAGTCGGAGGAG
1 TATCTATATCTGGAGTCGGAGGAG
87999 ATCTATCTATATCTGGAGTCGGAGGAG
1 ---TATCTATATCTGGAGTCGGAGGAG
*
88026 -ATCTATATATGGAG
1 TATCTATATCTGGAG
88040 CTCCTATCCG
Statistics
Matches: 37, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
23 13 0.35
27 24 0.65
ACGTcount: A:0.28, C:0.12, G:0.29, T:0.31
Consensus pattern (24 bp):
TATCTATATCTGGAGTCGGAGGAG
Left flanking sequence: Indices 87475 -- 87974
CTATCTAAATCTCTAGTTCGGGGTGGGGGCTCTCCGAGAACAGGCCGACTGGGATTAGCAGCCAA
CTCCAACTAGATAGTCTGGAGTATGGCGATGGATATACAATATACAAACAGGAGGGGGGGCCGAC
TATGATAGATCTCGACCCCTATATAGAGAGAGAGAGAGATATAGATCTATATGTCTCCTCGAGAG
CGGAGGCCCTGTAATATATAGTTAGACAGTCAGTACTGCCACTTGGGAATCAGCAAGTGAGGTCG
CCCGAATGATCGCATTCCGAAGATCTATAGGGAGGGGGAGGAGATTCCAGCAATCGAGAAAGCGG
ATCCCTATTCTTTAGATCCTGCACCAGTTCCCCGAATCTCCCTCTCCTGCGTTGCGTCTCTATTA
TCTCATGCTGCAACAGCATGCTTTCCTTTGCCCGTTCGTAAAGATCACGCAGGAAAGCTATCTGC
CCGCCTCCAAAGTCGTCGGTGCGGGAAGCTGGTCAAGACTCTATA
Right flanking sequence: Indices 88040 -- 88539
CTCCTATCCGAGGAGCGTCCACTAGTCTCGGAGGAGCTTCCATTCCTAACGTGCTCGAGACCCCT
AGAGATCTAGATCCAGATGGCGAGGCCTCCCTATCCATCTCTATCTCTGGGACACCTGAGCAGAT
CACTGGGGTGGAGCCCCCCCTCCCATTCCCCCCAATTGATTCCACCGTCTCCGCTCCGAGATATA
GAGATAGGGTTGCACGGCGATATTTGGTATAGGCAGTTCTGTCGCAGCCCCGGCCTCCCCCCCCT
CTCTAGAGAACTCGGCTCTCTATCTATATGGGGCCCGGGGGCCTATAGAGAGAGATCTGGGCCCG
ACCCCCGGCCATCCCATCTAGAATATAGAGAGAGGCCCCCTCCCCTCATATATATTTGATTTCTA
ACGGGTAACGGGTTTAGAGATCGGGCCATAGATCTAGATCAGACGATTGATACGATATGATCTTG
ATCTGATCTGATCTGATCTATATAGAGGGGGAGGGGGACAATCCT
Found at i:88005 original size:27 final size:27
Alignment explanation
Indices: 87975--88031 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
87965 AGACTCTATA
87975 TATCTATATCTGGAGTCGGAGGAGATC
1 TATCTATATCTGGAGTCGGAGGAGATC
88002 TATCTATATCTGGAGTCGGAGGAGATC
1 TATCTATATCTGGAGTCGGAGGAGATC
88029 TAT
1 TAT
88032 ATATGGAGCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.26, C:0.14, G:0.28, T:0.32
Consensus pattern (27 bp):
TATCTATATCTGGAGTCGGAGGAGATC
Left flanking sequence: Indices 87475 -- 87974
CTATCTAAATCTCTAGTTCGGGGTGGGGGCTCTCCGAGAACAGGCCGACTGGGATTAGCAGCCAA
CTCCAACTAGATAGTCTGGAGTATGGCGATGGATATACAATATACAAACAGGAGGGGGGGCCGAC
TATGATAGATCTCGACCCCTATATAGAGAGAGAGAGAGATATAGATCTATATGTCTCCTCGAGAG
CGGAGGCCCTGTAATATATAGTTAGACAGTCAGTACTGCCACTTGGGAATCAGCAAGTGAGGTCG
CCCGAATGATCGCATTCCGAAGATCTATAGGGAGGGGGAGGAGATTCCAGCAATCGAGAAAGCGG
ATCCCTATTCTTTAGATCCTGCACCAGTTCCCCGAATCTCCCTCTCCTGCGTTGCGTCTCTATTA
TCTCATGCTGCAACAGCATGCTTTCCTTTGCCCGTTCGTAAAGATCACGCAGGAAAGCTATCTGC
CCGCCTCCAAAGTCGTCGGTGCGGGAAGCTGGTCAAGACTCTATA
Right flanking sequence: Indices 88032 -- 88531
ATATGGAGCTCCTATCCGAGGAGCGTCCACTAGTCTCGGAGGAGCTTCCATTCCTAACGTGCTCG
AGACCCCTAGAGATCTAGATCCAGATGGCGAGGCCTCCCTATCCATCTCTATCTCTGGGACACCT
GAGCAGATCACTGGGGTGGAGCCCCCCCTCCCATTCCCCCCAATTGATTCCACCGTCTCCGCTCC
GAGATATAGAGATAGGGTTGCACGGCGATATTTGGTATAGGCAGTTCTGTCGCAGCCCCGGCCTC
CCCCCCCTCTCTAGAGAACTCGGCTCTCTATCTATATGGGGCCCGGGGGCCTATAGAGAGAGATC
TGGGCCCGACCCCCGGCCATCCCATCTAGAATATAGAGAGAGGCCCCCTCCCCTCATATATATTT
GATTTCTAACGGGTAACGGGTTTAGAGATCGGGCCATAGATCTAGATCAGACGATTGATACGATA
TGATCTTGATCTGATCTGATCTGATCTATATAGAGGGGGAGGGGG
Found at i:89450 original size:19 final size:19
Alignment explanation
Indices: 89426--89465 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
89416 TAGATAGGGG
89426 CCCTATCTGAACTATCTGC
1 CCCTATCTGAACTATCTGC
89445 CCCTATCTGAACTATCTGC
1 CCCTATCTGAACTATCTGC
89464 CC
1 CC
89466 TCTCTATATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.20, C:0.40, G:0.10, T:0.30
Consensus pattern (19 bp):
CCCTATCTGAACTATCTGC
Left flanking sequence: Indices 88926 -- 89425
CATCCGGAGTCCCTATATATAGATATCTATATGTATATGGCGGCCTACTATATCTATATATTGGT
TGGTCTACCCCGCCCCAGGCGGAGGGACAGGAGCGCTCCAACTATATACTGGGGGCTCAACCTAT
CCCTAATATAGAGTATAGCGATAGCGTAGCGCAGTCTGATTGATTCCTCTCTTCTCGTCTCGTAT
ATAGCGCACCTATAACTATATATCTGATTGATTCCTCTCTTCTCGCTGCTGAAGTGAAGCCGGAT
AGATAGGGGCCCCTCTATAGATATATATATGGGCAGAGTAGGCCGCCCCCCCCCCCTCTATAGAA
ATGGGATATGGTGCATAAATGCCCTATATATCTATCTGGGCAGCCCAGCTATATAGGCCAGGCCA
GGCCGCCATAAGAGATATAGACTCCCGGGCCCTCTTCCCCAGCCTATCTATATAGAGAGGGGGGG
GCCGCCCTATATCTATAACTCCATACCATGAGATATAGATAGGGG
Right flanking sequence: Indices 89466 -- 89965
TCTCTATATATCTGGGCCTATCTGGGCCTATCTCACTAACGCCAATATCTATATAGGGGCCCTAT
CCATTCTGAACAGTGACGCATCTTCCTTTTGAACCGACCCCCCATAGCCATAGTTCTCTAGGGGA
GGGGTGCGCCCGGAGGTGGCCCTGGCTTTCTCTCTATATATGGGGTGGGGCCCTATATAGAATAT
ATACAACTGGCCGACTCCCTCTCCTGCTCCCTCCCGATAAGCCCCAGATAGGTGAGATATCCATA
TAGAGGGGGGGGGGAGGGGGCCCATATATAGATAGGGGTCGATCGTGAAGTCACCGGTCGTATCA
CGTATATGGTCTAGATATAGAGAATGGTGGATAGTTTAGAATGGCGGATAGAATGGAGTGGAGCT
CGAGATGCACCTATTCTGGGAGTCGGCCTCTCTATATATGGGGCTAGCTCCCAACCCCCATCTCT
ATATCTGCCCTAGCCCCCTATCTGAACTATCTGATAGGATAGAAG
Found at i:89489 original size:10 final size:10
Alignment explanation
Indices: 89474--89498 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
89464 CCTCTCTATA
89474 TATCTGGGCC
1 TATCTGGGCC
89484 TATCTGGGCC
1 TATCTGGGCC
89494 TATCT
1 TATCT
89499 CACTAACGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.12, C:0.28, G:0.24, T:0.36
Consensus pattern (10 bp):
TATCTGGGCC
Left flanking sequence: Indices 88974 -- 89473
TATATCTATATATTGGTTGGTCTACCCCGCCCCAGGCGGAGGGACAGGAGCGCTCCAACTATATA
CTGGGGGCTCAACCTATCCCTAATATAGAGTATAGCGATAGCGTAGCGCAGTCTGATTGATTCCT
CTCTTCTCGTCTCGTATATAGCGCACCTATAACTATATATCTGATTGATTCCTCTCTTCTCGCTG
CTGAAGTGAAGCCGGATAGATAGGGGCCCCTCTATAGATATATATATGGGCAGAGTAGGCCGCCC
CCCCCCCCTCTATAGAAATGGGATATGGTGCATAAATGCCCTATATATCTATCTGGGCAGCCCAG
CTATATAGGCCAGGCCAGGCCGCCATAAGAGATATAGACTCCCGGGCCCTCTTCCCCAGCCTATC
TATATAGAGAGGGGGGGGCCGCCCTATATCTATAACTCCATACCATGAGATATAGATAGGGGCCC
TATCTGAACTATCTGCCCCTATCTGAACTATCTGCCCTCTCTATA
Right flanking sequence: Indices 89499 -- 89998
CACTAACGCCAATATCTATATAGGGGCCCTATCCATTCTGAACAGTGACGCATCTTCCTTTTGAA
CCGACCCCCCATAGCCATAGTTCTCTAGGGGAGGGGTGCGCCCGGAGGTGGCCCTGGCTTTCTCT
CTATATATGGGGTGGGGCCCTATATAGAATATATACAACTGGCCGACTCCCTCTCCTGCTCCCTC
CCGATAAGCCCCAGATAGGTGAGATATCCATATAGAGGGGGGGGGGAGGGGGCCCATATATAGAT
AGGGGTCGATCGTGAAGTCACCGGTCGTATCACGTATATGGTCTAGATATAGAGAATGGTGGATA
GTTTAGAATGGCGGATAGAATGGAGTGGAGCTCGAGATGCACCTATTCTGGGAGTCGGCCTCTCT
ATATATGGGGCTAGCTCCCAACCCCCATCTCTATATCTGCCCTAGCCCCCTATCTGAACTATCTG
ATAGGATAGAAGACATCCTCTTCTATCTCTATCGTCTTCATGCCA
Found at i:90272 original size:4 final size:4
Alignment explanation
Indices: 90263--90340 Score: 84
Period size: 4 Copynumber: 19.5 Consensus size: 4
90253 CCCTTCCGAA
* * * * *
90263 CTAT CTAT CTAT CTCT CTAT CTAT CTCT CTCT CTAT ATCT CTAT CTAT
1 CTAT CTAT CTAT CTAT CTAT CTAT CTAT CTAT CTAT CTAT CTAT CTAT
* * *
90311 CTCT CTAT CTAT ATCT CTAT CTAT CTAT CT
1 CTAT CTAT CTAT CTAT CTAT CTAT CTAT CT
90341 GTTCATGTTC
Statistics
Matches: 60, Mismatches: 14, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
4 60 1.00
ACGTcount: A:0.19, C:0.31, G:0.00, T:0.50
Consensus pattern (4 bp):
CTAT
Left flanking sequence: Indices 89763 -- 90262
GTCGATCGTGAAGTCACCGGTCGTATCACGTATATGGTCTAGATATAGAGAATGGTGGATAGTTT
AGAATGGCGGATAGAATGGAGTGGAGCTCGAGATGCACCTATTCTGGGAGTCGGCCTCTCTATAT
ATGGGGCTAGCTCCCAACCCCCATCTCTATATCTGCCCTAGCCCCCTATCTGAACTATCTGATAG
GATAGAAGACATCCTCTTCTATCTCTATCGTCTTCATGCCATCAGTAAGTATATTAGTTGCCGCC
TATATATCTATCTTGGGAAACTATGGTCATCAAAACAGATATCAAGTGGGGCCATATCTATATCT
GCTTCCCTCCCCGTTTCCCACAACAATAGGGAGGGGAGGTGTAGGAGAAAGAAACACACATCTAT
GGGAACACACATCTACTCTACTCTACTCATCTACAGTCGACTAGACTAGATACTGGACTAGACTC
TACCTCCCCTAATCATCGAGATCGATAGAGTTGTCCCCTTCCGAA
Right flanking sequence: Indices 90341 -- 90840
GTTCATGTTCATAATGGATCTAAGGGTGGAATTAGAATTCCGGGTTGGGGACCCTATCTGTCTAT
AATGGATATCCCGACTAAATGATACCATACTCCATGGACCCTATCCATAAATGACCCTTTCCTAT
CTAACCCTATCGCCATATAGTTCAGATAGGCGCCCCCATAGGCCCCTCTCTCTATAGAATAGAGA
ACCATCCTAGAGGGCCCGGGACTGACTGGACTGCCTATGTATCGAAGGGCAGTAATGAATATAGA
AATAGAATACTATGGGGTATAGGGCCAGTGAGGGGCAGGCGGGCCAGTGAAGGGCAGGCGGGGTA
TAGGGCCAGTGAAGGGCGGGGCAGGGCAGCTTTGATATATAGGGCCAGTGAAGGGCGGGGCAGGC
GGGCCAGTGAAGGGCGGGGCAGCTTTACCAGACCAGTCTCCCGCCCACCTTTGAGCGTTTCTATT
CTATAGCTCAGCTGGGTCCCTATAGTTCTCTATGGGGAACAGAAC
Found at i:90283 original size:12 final size:12
Alignment explanation
Indices: 90266--90336 Score: 115
Period size: 12 Copynumber: 5.9 Consensus size: 12
90256 TTCCGAACTA
90266 TCTATCTATCTC
1 TCTATCTATCTC
90278 TCTATCTATCTC
1 TCTATCTATCTC
* *
90290 TCTCTCTATATC
1 TCTATCTATCTC
90302 TCTATCTATCTC
1 TCTATCTATCTC
*
90314 TCTATCTATATC
1 TCTATCTATCTC
90326 TCTATCTATCT
1 TCTATCTATCT
90337 ATCTGTTCAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 53 1.00
ACGTcount: A:0.18, C:0.31, G:0.00, T:0.51
Consensus pattern (12 bp):
TCTATCTATCTC
Left flanking sequence: Indices 89766 -- 90265
GATCGTGAAGTCACCGGTCGTATCACGTATATGGTCTAGATATAGAGAATGGTGGATAGTTTAGA
ATGGCGGATAGAATGGAGTGGAGCTCGAGATGCACCTATTCTGGGAGTCGGCCTCTCTATATATG
GGGCTAGCTCCCAACCCCCATCTCTATATCTGCCCTAGCCCCCTATCTGAACTATCTGATAGGAT
AGAAGACATCCTCTTCTATCTCTATCGTCTTCATGCCATCAGTAAGTATATTAGTTGCCGCCTAT
ATATCTATCTTGGGAAACTATGGTCATCAAAACAGATATCAAGTGGGGCCATATCTATATCTGCT
TCCCTCCCCGTTTCCCACAACAATAGGGAGGGGAGGTGTAGGAGAAAGAAACACACATCTATGGG
AACACACATCTACTCTACTCTACTCATCTACAGTCGACTAGACTAGATACTGGACTAGACTCTAC
CTCCCCTAATCATCGAGATCGATAGAGTTGTCCCCTTCCGAACTA
Right flanking sequence: Indices 90337 -- 90836
ATCTGTTCATGTTCATAATGGATCTAAGGGTGGAATTAGAATTCCGGGTTGGGGACCCTATCTGT
CTATAATGGATATCCCGACTAAATGATACCATACTCCATGGACCCTATCCATAAATGACCCTTTC
CTATCTAACCCTATCGCCATATAGTTCAGATAGGCGCCCCCATAGGCCCCTCTCTCTATAGAATA
GAGAACCATCCTAGAGGGCCCGGGACTGACTGGACTGCCTATGTATCGAAGGGCAGTAATGAATA
TAGAAATAGAATACTATGGGGTATAGGGCCAGTGAGGGGCAGGCGGGCCAGTGAAGGGCAGGCGG
GGTATAGGGCCAGTGAAGGGCGGGGCAGGGCAGCTTTGATATATAGGGCCAGTGAAGGGCGGGGC
AGGCGGGCCAGTGAAGGGCGGGGCAGCTTTACCAGACCAGTCTCCCGCCCACCTTTGAGCGTTTC
TATTCTATAGCTCAGCTGGGTCCCTATAGTTCTCTATGGGGAACA
Found at i:90646 original size:19 final size:19
Alignment explanation
Indices: 90622--90662 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
90612 ATGGGGTATA
*
90622 GGGCCAGTGAGGGGCAGGC
1 GGGCCAGTGAAGGGCAGGC
90641 GGGCCAGTGAAGGGCAGGC
1 GGGCCAGTGAAGGGCAGGC
90660 GGG
1 GGG
90663 GTATAGGGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.17, C:0.20, G:0.59, T:0.05
Consensus pattern (19 bp):
GGGCCAGTGAAGGGCAGGC
Left flanking sequence: Indices 90122 -- 90621
GGAGGTGTAGGAGAAAGAAACACACATCTATGGGAACACACATCTACTCTACTCTACTCATCTAC
AGTCGACTAGACTAGATACTGGACTAGACTCTACCTCCCCTAATCATCGAGATCGATAGAGTTGT
CCCCTTCCGAACTATCTATCTATCTCTCTATCTATCTCTCTCTCTATATCTCTATCTATCTCTCT
ATCTATATCTCTATCTATCTATCTGTTCATGTTCATAATGGATCTAAGGGTGGAATTAGAATTCC
GGGTTGGGGACCCTATCTGTCTATAATGGATATCCCGACTAAATGATACCATACTCCATGGACCC
TATCCATAAATGACCCTTTCCTATCTAACCCTATCGCCATATAGTTCAGATAGGCGCCCCCATAG
GCCCCTCTCTCTATAGAATAGAGAACCATCCTAGAGGGCCCGGGACTGACTGGACTGCCTATGTA
TCGAAGGGCAGTAATGAATATAGAAATAGAATACTATGGGGTATA
Right flanking sequence: Indices 90663 -- 91162
GTATAGGGCCAGTGAAGGGCGGGGCAGGGCAGCTTTGATATATAGGGCCAGTGAAGGGCGGGGCA
GGCGGGCCAGTGAAGGGCGGGGCAGCTTTACCAGACCAGTCTCCCGCCCACCTTTGAGCGTTTCT
ATTCTATAGCTCAGCTGGGTCCCTATAGTTCTCTATGGGGAACAGAACTATAGAGAGTGGAGGCG
CCTGGCTGCGAGTGCCCCCACTCTAACCCCCATATAGAGAGAGGGGGGCCGAGCTATATACGTCT
CACCTCTCCCTCTCTATAGTGGAGTATACTACTCTAAGATCCAACCCGGCTATATCTACCATCTC
TCCATATCTCCATATCTATAGAGAGGGTCCTTCATCCCATCCCAATGACTCTATCTGAGAGAAAT
TTCCGGCCGGGGCCTGTATATAGATATGGGTTTCGAGTATGGATAGATGGCCCCCCCTCTCTCCC
CCGGGGGGACTAGAGATCTCTCTGCCCATTTCTCTGCCCATCTAT
Found at i:90739 original size:24 final size:24
Alignment explanation
Indices: 90707--90752 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
90697 TTGATATATA
90707 GGGCCAGTGAAGGGCGGGGCAGGC
1 GGGCCAGTGAAGGGCGGGGCAGGC
90731 GGGCCAGTGAAGGGCGGGGCAG
1 GGGCCAGTGAAGGGCGGGGCAG
90753 CTTTACCAGA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.17, C:0.20, G:0.59, T:0.04
Consensus pattern (24 bp):
GGGCCAGTGAAGGGCGGGGCAGGC
Left flanking sequence: Indices 90207 -- 90706
GGACTAGACTCTACCTCCCCTAATCATCGAGATCGATAGAGTTGTCCCCTTCCGAACTATCTATC
TATCTCTCTATCTATCTCTCTCTCTATATCTCTATCTATCTCTCTATCTATATCTCTATCTATCT
ATCTGTTCATGTTCATAATGGATCTAAGGGTGGAATTAGAATTCCGGGTTGGGGACCCTATCTGT
CTATAATGGATATCCCGACTAAATGATACCATACTCCATGGACCCTATCCATAAATGACCCTTTC
CTATCTAACCCTATCGCCATATAGTTCAGATAGGCGCCCCCATAGGCCCCTCTCTCTATAGAATA
GAGAACCATCCTAGAGGGCCCGGGACTGACTGGACTGCCTATGTATCGAAGGGCAGTAATGAATA
TAGAAATAGAATACTATGGGGTATAGGGCCAGTGAGGGGCAGGCGGGCCAGTGAAGGGCAGGCGG
GGTATAGGGCCAGTGAAGGGCGGGGCAGGGCAGCTTTGATATATA
Right flanking sequence: Indices 90753 -- 91252
CTTTACCAGACCAGTCTCCCGCCCACCTTTGAGCGTTTCTATTCTATAGCTCAGCTGGGTCCCTA
TAGTTCTCTATGGGGAACAGAACTATAGAGAGTGGAGGCGCCTGGCTGCGAGTGCCCCCACTCTA
ACCCCCATATAGAGAGAGGGGGGCCGAGCTATATACGTCTCACCTCTCCCTCTCTATAGTGGAGT
ATACTACTCTAAGATCCAACCCGGCTATATCTACCATCTCTCCATATCTCCATATCTATAGAGAG
GGTCCTTCATCCCATCCCAATGACTCTATCTGAGAGAAATTTCCGGCCGGGGCCTGTATATAGAT
ATGGGTTTCGAGTATGGATAGATGGCCCCCCCTCTCTCCCCCGGGGGGACTAGAGATCTCTCTGC
CCATTTCTCTGCCCATCTATCCGCCCATGCCCATCTATCTGCCCATGCCCATCCATCTGCCCATC
TAGATCTATATGCGGGCGGGCGCCTATATGGAGAAATGCCCCATA
Found at i:91175 original size:18 final size:18
Alignment explanation
Indices: 91152--91206 Score: 92
Period size: 18 Copynumber: 3.1 Consensus size: 18
91142 CCCATTTCTC
*
91152 TGCCCATCTATCCGCCCA
1 TGCCCATCTATCTGCCCA
91170 TGCCCATCTATCTGCCCA
1 TGCCCATCTATCTGCCCA
*
91188 TGCCCATCCATCTGCCCA
1 TGCCCATCTATCTGCCCA
91206 T
1 T
91207 CTAGATCTAT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 35 1.00
ACGTcount: A:0.16, C:0.47, G:0.11, T:0.25
Consensus pattern (18 bp):
TGCCCATCTATCTGCCCA
Left flanking sequence: Indices 90652 -- 91151
GGGCAGGCGGGGTATAGGGCCAGTGAAGGGCGGGGCAGGGCAGCTTTGATATATAGGGCCAGTGA
AGGGCGGGGCAGGCGGGCCAGTGAAGGGCGGGGCAGCTTTACCAGACCAGTCTCCCGCCCACCTT
TGAGCGTTTCTATTCTATAGCTCAGCTGGGTCCCTATAGTTCTCTATGGGGAACAGAACTATAGA
GAGTGGAGGCGCCTGGCTGCGAGTGCCCCCACTCTAACCCCCATATAGAGAGAGGGGGGCCGAGC
TATATACGTCTCACCTCTCCCTCTCTATAGTGGAGTATACTACTCTAAGATCCAACCCGGCTATA
TCTACCATCTCTCCATATCTCCATATCTATAGAGAGGGTCCTTCATCCCATCCCAATGACTCTAT
CTGAGAGAAATTTCCGGCCGGGGCCTGTATATAGATATGGGTTTCGAGTATGGATAGATGGCCCC
CCCTCTCTCCCCCGGGGGGACTAGAGATCTCTCTGCCCATTTCTC
Right flanking sequence: Indices 91207 -- 91706
CTAGATCTATATGCGGGCGGGCGCCTATATGGAGAAATGCCCCATATATCATCGGGGGCCGGCCG
GGGGGCGGCTATATCTAATTCATATCTATGTAGATAGTCCCGGAGCTATGTTGATGCCGATGTTG
ATGTATGTGAGTGAGCTCAACTCGTATCACGTATGTAATAATATAATAGTTCAGGATCATGACAG
AAAATATCAATATCCAGCCCTCGATATTCTCTGGGGGCCCATATATAGATAGGGCCCGCCCCTCC
GGAGACCCTACCCTCTATTTTCTCTTATCCGGAGGGTCTCCGGAGTCTGGGGAGGGCCCAGATAG
AGATAGGGCTCAATTGAAGAGAAGAGATTAAGGGTGGGGGTGGGGAGTATCCCCGGGAGGATCCG
ACTCAATGTGCCCCTTGACTTGAGTCCATATATAGATAGGGGGTCCTATGGTGAGGGGGTCAGCA
GACTGGTGGAACACCTATAGAGTGAAGAGTGAGATATAGATATAG
Found at i:91717 original size:22 final size:22
Alignment explanation
Indices: 91687--91759 Score: 56
Period size: 22 Copynumber: 3.2 Consensus size: 22
91677 TATAGAGTGA
*
91687 AGAGTGAGATATAGATATAGAT
1 AGAGAGAGATATAGATATAGAT
* * **
91709 AGAGAGAGAGATATATATCTTAT
1 AGAGAGAGATATAGATAT-AGAT
* * *
91732 CTGAGAGAGATATAGAGATAGAG
1 -AGAGAGAGATATAGATATAGAT
91755 AGAGA
1 AGAGA
91760 CTGAAGAGTG
Statistics
Matches: 36, Mismatches: 13, Indels: 4
0.68 0.25 0.08
Matches are distributed among these distances:
22 19 0.53
23 3 0.08
24 14 0.39
ACGTcount: A:0.45, C:0.03, G:0.29, T:0.23
Consensus pattern (22 bp):
AGAGAGAGATATAGATATAGAT
Left flanking sequence: Indices 91187 -- 91686
ATGCCCATCCATCTGCCCATCTAGATCTATATGCGGGCGGGCGCCTATATGGAGAAATGCCCCAT
ATATCATCGGGGGCCGGCCGGGGGGCGGCTATATCTAATTCATATCTATGTAGATAGTCCCGGAG
CTATGTTGATGCCGATGTTGATGTATGTGAGTGAGCTCAACTCGTATCACGTATGTAATAATATA
ATAGTTCAGGATCATGACAGAAAATATCAATATCCAGCCCTCGATATTCTCTGGGGGCCCATATA
TAGATAGGGCCCGCCCCTCCGGAGACCCTACCCTCTATTTTCTCTTATCCGGAGGGTCTCCGGAG
TCTGGGGAGGGCCCAGATAGAGATAGGGCTCAATTGAAGAGAAGAGATTAAGGGTGGGGGTGGGG
AGTATCCCCGGGAGGATCCGACTCAATGTGCCCCTTGACTTGAGTCCATATATAGATAGGGGGTC
CTATGGTGAGGGGGTCAGCAGACTGGTGGAACACCTATAGAGTGA
Right flanking sequence: Indices 91760 -- 92259
CTGAAGAGTGAGTCGAGAGAGATATAGATAGATCGAGAGATACAGATAGAGAGAGAGATCTATAT
AGAGATAGAGATATATATCTGAGAGAGATACAGATAGAGATAGTTTCATTCAGATAGACTCTATA
GGCTATATGCATGCTATGCTTGGGGGGGACGAGGGAGACTATAGCATCCCTTAGAAGCTAACTCT
ACTGGCCATATATCCCATATATCTCTATCTGGCTGGCCCTCCGGCCGGCCTAGATTTGAGCATAG
ACCTCGGTGGATGGGCCATAGATCGATCTAGATAGGCCCTCTCCTCGGCCTCCCTATCTCTCTAT
TGTATCTTCTAGCCGCTCCCCACTATCTCATCCCCACCCCATATAGATATAAGGGAAGGGGCTCA
ACCCAACCCCGGCGGCCCTAGCCCTATATACCTATCTGGGCGGCCTATGCCGGCCTGGCCTTTTC
TCTTCGCACCGCCCCCCCCTCCTATATCCTATATAGATCATACTA
Found at i:91720 original size:18 final size:18
Alignment explanation
Indices: 91699--91864 Score: 93
Period size: 18 Copynumber: 8.8 Consensus size: 18
91689 AGTGAGATAT
91699 AGATATAGATAGAGAGAG
1 AGATATAGATAGAGAGAG
* **
91717 AGATATATATCTTATCTGAGAG
1 AGATATAGA---TA-GAGAGAG
* *
91739 AGATATAGAGATAGAGAG
1 AGATATAGATAGAGAGAG
*
91757 AGACTGA-AGAGTGAGTCGAGAG
1 AGA-T-ATAGA-T-AG-AGAGAG
**
91779 AGATATAGATAGATCGAG
1 AGATATAGATAGAGAGAG
*
91797 AGATACAGATAGAGAGAG
1 AGATATAGATAGAGAGAG
* * *
91815 AGATCTATATAGAGATAG
1 AGATATAGATAGAGAGAG
* **
91833 AGATATATAT-CTGAGAG
1 AGATATAGATAGAGAGAG
*
91850 AGATACAGATAGAGA
1 AGATATAGATAGAGA
91865 TAGTTTCATT
Statistics
Matches: 109, Mismatches: 28, Indels: 22
0.69 0.18 0.14
Matches are distributed among these distances:
17 12 0.11
18 59 0.54
19 7 0.06
20 3 0.03
21 7 0.06
22 21 0.19
ACGTcount: A:0.45, C:0.05, G:0.29, T:0.21
Consensus pattern (18 bp):
AGATATAGATAGAGAGAG
Left flanking sequence: Indices 91199 -- 91698
CTGCCCATCTAGATCTATATGCGGGCGGGCGCCTATATGGAGAAATGCCCCATATATCATCGGGG
GCCGGCCGGGGGGCGGCTATATCTAATTCATATCTATGTAGATAGTCCCGGAGCTATGTTGATGC
CGATGTTGATGTATGTGAGTGAGCTCAACTCGTATCACGTATGTAATAATATAATAGTTCAGGAT
CATGACAGAAAATATCAATATCCAGCCCTCGATATTCTCTGGGGGCCCATATATAGATAGGGCCC
GCCCCTCCGGAGACCCTACCCTCTATTTTCTCTTATCCGGAGGGTCTCCGGAGTCTGGGGAGGGC
CCAGATAGAGATAGGGCTCAATTGAAGAGAAGAGATTAAGGGTGGGGGTGGGGAGTATCCCCGGG
AGGATCCGACTCAATGTGCCCCTTGACTTGAGTCCATATATAGATAGGGGGTCCTATGGTGAGGG
GGTCAGCAGACTGGTGGAACACCTATAGAGTGAAGAGTGAGATAT
Right flanking sequence: Indices 91865 -- 92364
TAGTTTCATTCAGATAGACTCTATAGGCTATATGCATGCTATGCTTGGGGGGGACGAGGGAGACT
ATAGCATCCCTTAGAAGCTAACTCTACTGGCCATATATCCCATATATCTCTATCTGGCTGGCCCT
CCGGCCGGCCTAGATTTGAGCATAGACCTCGGTGGATGGGCCATAGATCGATCTAGATAGGCCCT
CTCCTCGGCCTCCCTATCTCTCTATTGTATCTTCTAGCCGCTCCCCACTATCTCATCCCCACCCC
ATATAGATATAAGGGAAGGGGCTCAACCCAACCCCGGCGGCCCTAGCCCTATATACCTATCTGGG
CGGCCTATGCCGGCCTGGCCTTTTCTCTTCGCACCGCCCCCCCCTCCTATATCCTATATAGATCA
TACTATTCTACCGCGGTTGGTTCCTCGGCGATCTATATACGTGATAGACCCGTCTATACTCTATC
CAGATCTCTGGATATAGGAGGCCCCCTCTAGATCTCTCTATATGG
Found at i:93769 original size:5 final size:5
Alignment explanation
Indices: 93759--93813 Score: 110
Period size: 5 Copynumber: 11.0 Consensus size: 5
93749 GGATGCAATA
93759 TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG
1 TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG
93809 TAGGG
1 TAGGG
93814 CGGGTCATTC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 50 1.00
ACGTcount: A:0.20, C:0.00, G:0.60, T:0.20
Consensus pattern (5 bp):
TAGGG
Left flanking sequence: Indices 93259 -- 93758
GTATATAAGGTGGTCGACCCGGGGATTGGGTTATTTCAGACCATACTTTAGAGGATGGGGACACC
ACTGATACTGAATCTGTTTAGTTAGTTACCGTACCGGTTATCGATTTGACGAGCATAGATATAGA
TGTGATGTTGGGCCGACATTAATTCATGAATGACGCCGGCCGCCCACCCATCCCTATTGATTGGG
GGAGGGTCGGGGCCCTATATCTCCCCTATCGTTTGAAATAGGGGGGCGAACGAATATATGTCTGT
CTATGGGACCCAACGTCAACGTCTATATATGCCGGGTCAGCGCAGATAGATAGAAATGTCTAGAC
AGTATCGATGATTGGGCGGCCTATATACCTATCTATCTGTCTATCTGGGCCCAGCCGGGAGTAAC
CGATGCGGGTGAGCCCTATATCTATAACTCGCTCCCATAATCTATATATATAGTTGGGCTCGGCC
CTCTCTATTCTCTATATAGTAGACGCGGGTAAGATGGATGCAATA
Right flanking sequence: Indices 93814 -- 94313
CGGGTCATTCAGATTAACAACCCAACCCCATCTATCGGAGCTATATAGAGAGTCCCCCATAGACG
CCGATGGCCCCTATCTAGTTCTATAGTTCGGGGTGGGGGGACCTGATCATTGGGATCATCCCTGT
CCGTATGGTGCCATAGTGATCTATAGGGCCATAGTGATCTATAGGCATCCGCCGATCAGTAGGGA
AGGGAGTTGCAGATAGTGATAGGGGGCGAGAGAGAAGGCAGGTGGGAGCGGGCCCCTATCAAATC
AACCGGGACGCGGGCACTCGATTGATATATTGATGCACTCGACTGCCCCCATAGTGATAGTGGTT
GACTGCATCAATGAATCTCTATTCTATATCGTACGTAATAGACTCATTCCAGCAACCGACCCCTA
TCTAGTACTATCACTATGGAGGCCCCATGGGTGATGGGTGACCGCCAGTTAGATAGATAGGGAAG
ATATATATATATATATATATATATATATACGTGCCCTATCTAGAA
Found at i:93976 original size:18 final size:18
Alignment explanation
Indices: 93953--93988 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
93943 TCCGTATGGT
93953 GCCATAGTGATCTATAGG
1 GCCATAGTGATCTATAGG
93971 GCCATAGTGATCTATAGG
1 GCCATAGTGATCTATAGG
93989 CATCCGCCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (18 bp):
GCCATAGTGATCTATAGG
Left flanking sequence: Indices 93453 -- 93952
GGGAGGGTCGGGGCCCTATATCTCCCCTATCGTTTGAAATAGGGGGGCGAACGAATATATGTCTG
TCTATGGGACCCAACGTCAACGTCTATATATGCCGGGTCAGCGCAGATAGATAGAAATGTCTAGA
CAGTATCGATGATTGGGCGGCCTATATACCTATCTATCTGTCTATCTGGGCCCAGCCGGGAGTAA
CCGATGCGGGTGAGCCCTATATCTATAACTCGCTCCCATAATCTATATATATAGTTGGGCTCGGC
CCTCTCTATTCTCTATATAGTAGACGCGGGTAAGATGGATGCAATATAGGGTAGGGTAGGGTAGG
GTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGCGGGTCATTCAGATTAACAACCCAACCCC
ATCTATCGGAGCTATATAGAGAGTCCCCCATAGACGCCGATGGCCCCTATCTAGTTCTATAGTTC
GGGGTGGGGGGACCTGATCATTGGGATCATCCCTGTCCGTATGGT
Right flanking sequence: Indices 93989 -- 94488
CATCCGCCGATCAGTAGGGAAGGGAGTTGCAGATAGTGATAGGGGGCGAGAGAGAAGGCAGGTGG
GAGCGGGCCCCTATCAAATCAACCGGGACGCGGGCACTCGATTGATATATTGATGCACTCGACTG
CCCCCATAGTGATAGTGGTTGACTGCATCAATGAATCTCTATTCTATATCGTACGTAATAGACTC
ATTCCAGCAACCGACCCCTATCTAGTACTATCACTATGGAGGCCCCATGGGTGATGGGTGACCGC
CAGTTAGATAGATAGGGAAGATATATATATATATATATATATATATATACGTGCCCTATCTAGAA
TTATGAATGAGAGGAGGGGGGGGGCCAGATGGAATAGAACTATGGGCGATCGATCATAGTTCGAT
TCCTGCGATCTCCTCCCCCAGCCCCTCTATAGAACTATGGGCGGGTAGGCCGCCATAGTGTGATA
GGGGCGGAGGGCCGCCCAATGGATCTATCACACTAGAGGGGCACA
Found at i:94276 original size:2 final size:2
Alignment explanation
Indices: 94269--94297 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
94259 GATAGGGAAG
94269 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
94298 CGTGCCCTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 93769 -- 94268
TAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGCGGGTCATTCAGATTAACAA
CCCAACCCCATCTATCGGAGCTATATAGAGAGTCCCCCATAGACGCCGATGGCCCCTATCTAGTT
CTATAGTTCGGGGTGGGGGGACCTGATCATTGGGATCATCCCTGTCCGTATGGTGCCATAGTGAT
CTATAGGGCCATAGTGATCTATAGGCATCCGCCGATCAGTAGGGAAGGGAGTTGCAGATAGTGAT
AGGGGGCGAGAGAGAAGGCAGGTGGGAGCGGGCCCCTATCAAATCAACCGGGACGCGGGCACTCG
ATTGATATATTGATGCACTCGACTGCCCCCATAGTGATAGTGGTTGACTGCATCAATGAATCTCT
ATTCTATATCGTACGTAATAGACTCATTCCAGCAACCGACCCCTATCTAGTACTATCACTATGGA
GGCCCCATGGGTGATGGGTGACCGCCAGTTAGATAGATAGGGAAG
Right flanking sequence: Indices 94298 -- 94797
CGTGCCCTATCTAGAATTATGAATGAGAGGAGGGGGGGGGCCAGATGGAATAGAACTATGGGCGA
TCGATCATAGTTCGATTCCTGCGATCTCCTCCCCCAGCCCCTCTATAGAACTATGGGCGGGTAGG
CCGCCATAGTGTGATAGGGGCGGAGGGCCGCCCAATGGATCTATCACACTAGAGGGGCACATAGT
GATCTGATCTGCCGGGAACATGATTCTTCAGTCGATAGTCGAGCAAACACCCCCATAGTGTGATA
GGCCATAGAGAGATAGGGGTCGAGCATGAATAGGGCCCAACCCAACTAGGATATGGGGGGATATG
GGGCCTATCTCTCTTGGGAGCCCTCTATCAGTTGAGCTCTCATTCTATTCTCCAGTTGAGCCGCC
CCACTTAAACTTTAGCAGCCCTCTACTGCTAGTTTCACTATATGGGATCACTCGAGTTGAGCTCC
CTCTATCTTGTAGTTCGCTCTGATATGCACCGGACCGTGAGATAC
Found at i:95944 original size:14 final size:14
Alignment explanation
Indices: 95925--95952 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
95915 TAGGCGACTA
95925 TAGAGACTAGGGAC
1 TAGAGACTAGGGAC
95939 TAGAGACTAGGGAC
1 TAGAGACTAGGGAC
95953 CCTTCTTATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.36, T:0.14
Consensus pattern (14 bp):
TAGAGACTAGGGAC
Left flanking sequence: Indices 95425 -- 95924
TCGGGTACGGTTGGAGAAGATCGGGGCTCTGGATATGGCAGGAGAGCGGAGAGCTGCGCTTGAAT
CAATCAGACTGCGCTCTATATTCTATTATCTAGATTCGGTCGAGTATCTATAGTGAGGTGAGGTC
AGGACTCTCTAGAATAGAAACCGTTGATCGAGACGGGGCCGGACTACTCTCAATAGTCGATAGTA
TGTCTCTATAGTCAGGACTCTATGGAATAGAAACCGTTGATCGAGACAGGCATGCGGGGCTCTCC
TCTCCGGGTGGGCCGGCGACCCCCCCTCTATATCTATAGTCTAGATATGGGAATAGAAAGGGCCC
TATCCCTATAGAGAGTAGGGGTAGGGGGTCCGGTCGAGTGGCCTACTCTACTATGGGCTCTAGTC
TAGTCGGTATAGGTATAGGTCCGAGGGACCGGACCCGAATAGGCAACTAGAGAGAGATATATAGA
TAGGGGGACAGAGCTCCCATATAGATATAGGGGAGTAGGCGACTA
Right flanking sequence: Indices 95953 -- 96452
CCTTCTTATCTGACTAGAGATACAGACAGATGGGTAGAGACTCTGGATTAGATGGGTAGAGACTC
TAGATTAGATGGGTAGATCCCGGTAGATTCAATAGGACGGACGTATATAGAGAGGAGAGATCTGT
CGGCCTACTCTACTATAGACTCTAATCTAGAGTCTAGTCCGGGCTTTGACCATGTCTCCCGAGTA
ATCAGTACATATGGCGCAAGACGGTTTCACAGATCGAGGTCGGAATGGGATCGGGTGTTTCACGT
CTTGCCGTAGTGCCCGGTCGGAGATGAATGAGGATTCGAACCTCATGGGCCTCGGCCTCAAATAA
ATCAATATTTACAGGGCAGGTCAGGCCCCGATCCGGCATGATCATCCACGGATACACCTATCCAT
ACCCACCTACCACCCACCTACCTATCCATCCCCACCTATCCATCCCCACCTACCTATCCATCCCC
ACCTATCCATCCCCATCCCCCCTCCAGCCACTCTATCTGGTCCCT
Found at i:96007 original size:22 final size:22
Alignment explanation
Indices: 95980--96034 Score: 101
Period size: 22 Copynumber: 2.5 Consensus size: 22
95970 AGATACAGAC
*
95980 AGATGGGTAGAGACTCTGGATT
1 AGATGGGTAGAGACTCTAGATT
96002 AGATGGGTAGAGACTCTAGATT
1 AGATGGGTAGAGACTCTAGATT
96024 AGATGGGTAGA
1 AGATGGGTAGA
96035 TCCCGGTAGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.31, C:0.07, G:0.36, T:0.25
Consensus pattern (22 bp):
AGATGGGTAGAGACTCTAGATT
Left flanking sequence: Indices 95480 -- 95979
GCGCTTGAATCAATCAGACTGCGCTCTATATTCTATTATCTAGATTCGGTCGAGTATCTATAGTG
AGGTGAGGTCAGGACTCTCTAGAATAGAAACCGTTGATCGAGACGGGGCCGGACTACTCTCAATA
GTCGATAGTATGTCTCTATAGTCAGGACTCTATGGAATAGAAACCGTTGATCGAGACAGGCATGC
GGGGCTCTCCTCTCCGGGTGGGCCGGCGACCCCCCCTCTATATCTATAGTCTAGATATGGGAATA
GAAAGGGCCCTATCCCTATAGAGAGTAGGGGTAGGGGGTCCGGTCGAGTGGCCTACTCTACTATG
GGCTCTAGTCTAGTCGGTATAGGTATAGGTCCGAGGGACCGGACCCGAATAGGCAACTAGAGAGA
GATATATAGATAGGGGGACAGAGCTCCCATATAGATATAGGGGAGTAGGCGACTATAGAGACTAG
GGACTAGAGACTAGGGACCCTTCTTATCTGACTAGAGATACAGAC
Right flanking sequence: Indices 96035 -- 96534
TCCCGGTAGATTCAATAGGACGGACGTATATAGAGAGGAGAGATCTGTCGGCCTACTCTACTATA
GACTCTAATCTAGAGTCTAGTCCGGGCTTTGACCATGTCTCCCGAGTAATCAGTACATATGGCGC
AAGACGGTTTCACAGATCGAGGTCGGAATGGGATCGGGTGTTTCACGTCTTGCCGTAGTGCCCGG
TCGGAGATGAATGAGGATTCGAACCTCATGGGCCTCGGCCTCAAATAAATCAATATTTACAGGGC
AGGTCAGGCCCCGATCCGGCATGATCATCCACGGATACACCTATCCATACCCACCTACCACCCAC
CTACCTATCCATCCCCACCTATCCATCCCCACCTACCTATCCATCCCCACCTATCCATCCCCATC
CCCCCTCCAGCCACTCTATCTGGTCCCTTATCTTTCTCGGGCATCCATCCACCATCGCCATCCTC
TCGGATCCATCCCCCCTCCAGCCACTCTATCTGGTCCCTTATCTT
Found at i:96351 original size:14 final size:14
Alignment explanation
Indices: 96332--96422 Score: 67
Period size: 14 Copynumber: 6.1 Consensus size: 14
96322 TCCACGGATA
96332 CACCTATCCATACC
1 CACCTATCCATACC
*
96346 CACCTA-CCACCCACC
1 CACCTATCCA--TACC
* *
96361 TACCTATCCATCCC
1 CACCTATCCATACC
96375 CACCTATCCATCCCCACC
1 CACCTATCCAT----ACC
* *
96393 TACCTATCCATCCC
1 CACCTATCCATACC
*
96407 CACCTATCCATCCC
1 CACCTATCCATACC
96421 CA
1 CA
96423 TCCCCCCTCC
Statistics
Matches: 61, Mismatches: 9, Indels: 14
0.73 0.11 0.17
Matches are distributed among these distances:
13 3 0.05
14 35 0.57
15 8 0.13
16 3 0.05
18 12 0.20
ACGTcount: A:0.24, C:0.56, G:0.00, T:0.20
Consensus pattern (14 bp):
CACCTATCCATACC
Left flanking sequence: Indices 95832 -- 96331
GGTCCGAGGGACCGGACCCGAATAGGCAACTAGAGAGAGATATATAGATAGGGGGACAGAGCTCC
CATATAGATATAGGGGAGTAGGCGACTATAGAGACTAGGGACTAGAGACTAGGGACCCTTCTTAT
CTGACTAGAGATACAGACAGATGGGTAGAGACTCTGGATTAGATGGGTAGAGACTCTAGATTAGA
TGGGTAGATCCCGGTAGATTCAATAGGACGGACGTATATAGAGAGGAGAGATCTGTCGGCCTACT
CTACTATAGACTCTAATCTAGAGTCTAGTCCGGGCTTTGACCATGTCTCCCGAGTAATCAGTACA
TATGGCGCAAGACGGTTTCACAGATCGAGGTCGGAATGGGATCGGGTGTTTCACGTCTTGCCGTA
GTGCCCGGTCGGAGATGAATGAGGATTCGAACCTCATGGGCCTCGGCCTCAAATAAATCAATATT
TACAGGGCAGGTCAGGCCCCGATCCGGCATGATCATCCACGGATA
Right flanking sequence: Indices 96423 -- 96922
TCCCCCCTCCAGCCACTCTATCTGGTCCCTTATCTTTCTCGGGCATCCATCCACCATCGCCATCC
TCTCGGATCCATCCCCCCTCCAGCCACTCTATCTGGTCCCTTATCTTTCTCGGGCATCCATCCAC
CATCGCCATCCTCTCGGATCCATCCCCATCCAGAATAGATGGGGCGGGGCCAGCCCTATCGCCCT
ATCTAATAGATTGATCGATCGATCGATCTGGGGATGGGATGGGTGGGTGGCAGATAAGATAGTTC
AGGGCCATCCACACCTATCCATCCACACAGATCCATCCAGCCCTATCTAATATATCTGATCGGAG
GCATCCATCCCCATCCCCCCTCCAGCCCTATCTAGAACTCTCTATCTGGTCTATCAAGTCCAACC
AATCGATAAGATGAGATATAGTTCTCTAGAGGGGGGGGGAGTGCCGGGGGGGCCCCATCTCTATA
TAGGGGGCCCTCACCCGGGGCGCCATATCTATAGATAGGGGGCCC
Found at i:96396 original size:32 final size:32
Alignment explanation
Indices: 96333--96422 Score: 150
Period size: 32 Copynumber: 2.9 Consensus size: 32
96323 CCACGGATAC
*
96333 ACCTATCCATACCCACCTA-CCA--CCCACCT
1 ACCTATCCATCCCCACCTATCCATCCCCACCT
96362 ACCTATCCATCCCCACCTATCCATCCCCACCT
1 ACCTATCCATCCCCACCTATCCATCCCCACCT
96394 ACCTATCCATCCCCACCTATCCATCCCCA
1 ACCTATCCATCCCCACCTATCCATCCCCA
96423 TCCCCCCTCC
Statistics
Matches: 57, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
29 18 0.32
30 3 0.05
32 36 0.63
ACGTcount: A:0.24, C:0.56, G:0.00, T:0.20
Consensus pattern (32 bp):
ACCTATCCATCCCCACCTATCCATCCCCACCT
Left flanking sequence: Indices 95833 -- 96332
GTCCGAGGGACCGGACCCGAATAGGCAACTAGAGAGAGATATATAGATAGGGGGACAGAGCTCCC
ATATAGATATAGGGGAGTAGGCGACTATAGAGACTAGGGACTAGAGACTAGGGACCCTTCTTATC
TGACTAGAGATACAGACAGATGGGTAGAGACTCTGGATTAGATGGGTAGAGACTCTAGATTAGAT
GGGTAGATCCCGGTAGATTCAATAGGACGGACGTATATAGAGAGGAGAGATCTGTCGGCCTACTC
TACTATAGACTCTAATCTAGAGTCTAGTCCGGGCTTTGACCATGTCTCCCGAGTAATCAGTACAT
ATGGCGCAAGACGGTTTCACAGATCGAGGTCGGAATGGGATCGGGTGTTTCACGTCTTGCCGTAG
TGCCCGGTCGGAGATGAATGAGGATTCGAACCTCATGGGCCTCGGCCTCAAATAAATCAATATTT
ACAGGGCAGGTCAGGCCCCGATCCGGCATGATCATCCACGGATAC
Right flanking sequence: Indices 96423 -- 96922
TCCCCCCTCCAGCCACTCTATCTGGTCCCTTATCTTTCTCGGGCATCCATCCACCATCGCCATCC
TCTCGGATCCATCCCCCCTCCAGCCACTCTATCTGGTCCCTTATCTTTCTCGGGCATCCATCCAC
CATCGCCATCCTCTCGGATCCATCCCCATCCAGAATAGATGGGGCGGGGCCAGCCCTATCGCCCT
ATCTAATAGATTGATCGATCGATCGATCTGGGGATGGGATGGGTGGGTGGCAGATAAGATAGTTC
AGGGCCATCCACACCTATCCATCCACACAGATCCATCCAGCCCTATCTAATATATCTGATCGGAG
GCATCCATCCCCATCCCCCCTCCAGCCCTATCTAGAACTCTCTATCTGGTCTATCAAGTCCAACC
AATCGATAAGATGAGATATAGTTCTCTAGAGGGGGGGGGAGTGCCGGGGGGGCCCCATCTCTATA
TAGGGGGCCCTCACCCGGGGCGCCATATCTATAGATAGGGGGCCC
Found at i:96419 original size:18 final size:18
Alignment explanation
Indices: 96355--96412 Score: 88
Period size: 18 Copynumber: 3.4 Consensus size: 18
96345 CCACCTACCA
96355 CCCACCTACCTATCCAT-
1 CCCACCTACCTATCCATC
96372 -CC-CC-ACCTATCCATC
1 CCCACCTACCTATCCATC
96387 CCCACCTACCTATCCATC
1 CCCACCTACCTATCCATC
96405 CCCACCTA
1 CCCACCTA
96413 TCCATCCCCA
Statistics
Matches: 37, Mismatches: 0, Indels: 7
0.84 0.00 0.16
Matches are distributed among these distances:
14 10 0.27
15 2 0.05
16 4 0.11
17 2 0.05
18 19 0.51
ACGTcount: A:0.22, C:0.57, G:0.00, T:0.21
Consensus pattern (18 bp):
CCCACCTACCTATCCATC
Left flanking sequence: Indices 95855 -- 96354
AGGCAACTAGAGAGAGATATATAGATAGGGGGACAGAGCTCCCATATAGATATAGGGGAGTAGGC
GACTATAGAGACTAGGGACTAGAGACTAGGGACCCTTCTTATCTGACTAGAGATACAGACAGATG
GGTAGAGACTCTGGATTAGATGGGTAGAGACTCTAGATTAGATGGGTAGATCCCGGTAGATTCAA
TAGGACGGACGTATATAGAGAGGAGAGATCTGTCGGCCTACTCTACTATAGACTCTAATCTAGAG
TCTAGTCCGGGCTTTGACCATGTCTCCCGAGTAATCAGTACATATGGCGCAAGACGGTTTCACAG
ATCGAGGTCGGAATGGGATCGGGTGTTTCACGTCTTGCCGTAGTGCCCGGTCGGAGATGAATGAG
GATTCGAACCTCATGGGCCTCGGCCTCAAATAAATCAATATTTACAGGGCAGGTCAGGCCCCGAT
CCGGCATGATCATCCACGGATACACCTATCCATACCCACCTACCA
Right flanking sequence: Indices 96413 -- 96912
TCCATCCCCATCCCCCCTCCAGCCACTCTATCTGGTCCCTTATCTTTCTCGGGCATCCATCCACC
ATCGCCATCCTCTCGGATCCATCCCCCCTCCAGCCACTCTATCTGGTCCCTTATCTTTCTCGGGC
ATCCATCCACCATCGCCATCCTCTCGGATCCATCCCCATCCAGAATAGATGGGGCGGGGCCAGCC
CTATCGCCCTATCTAATAGATTGATCGATCGATCGATCTGGGGATGGGATGGGTGGGTGGCAGAT
AAGATAGTTCAGGGCCATCCACACCTATCCATCCACACAGATCCATCCAGCCCTATCTAATATAT
CTGATCGGAGGCATCCATCCCCATCCCCCCTCCAGCCCTATCTAGAACTCTCTATCTGGTCTATC
AAGTCCAACCAATCGATAAGATGAGATATAGTTCTCTAGAGGGGGGGGGAGTGCCGGGGGGGCCC
CATCTCTATATAGGGGGCCCTCACCCGGGGCGCCATATCTATAGA
Found at i:96500 original size:76 final size:76
Alignment explanation
Indices: 96420--96579 Score: 320
Period size: 76 Copynumber: 2.1 Consensus size: 76
96410 CTATCCATCC
96420 CCATCCCCCCTCCAGCCACTCTATCTGGTCCCTTATCTTTCTCGGGCATCCATCCACCATCGCCA
1 CCATCCCCCCTCCAGCCACTCTATCTGGTCCCTTATCTTTCTCGGGCATCCATCCACCATCGCCA
96485 TCCTCTCGGAT
66 TCCTCTCGGAT
96496 CCATCCCCCCTCCAGCCACTCTATCTGGTCCCTTATCTTTCTCGGGCATCCATCCACCATCGCCA
1 CCATCCCCCCTCCAGCCACTCTATCTGGTCCCTTATCTTTCTCGGGCATCCATCCACCATCGCCA
96561 TCCTCTCGGAT
66 TCCTCTCGGAT
96572 CCATCCCC
1 CCATCCCC
96580 ATCCAGAATA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
76 84 1.00
ACGTcount: A:0.14, C:0.47, G:0.11, T:0.27
Consensus pattern (76 bp):
CCATCCCCCCTCCAGCCACTCTATCTGGTCCCTTATCTTTCTCGGGCATCCATCCACCATCGCCA
TCCTCTCGGAT
Left flanking sequence: Indices 95920 -- 96419
GACTATAGAGACTAGGGACTAGAGACTAGGGACCCTTCTTATCTGACTAGAGATACAGACAGATG
GGTAGAGACTCTGGATTAGATGGGTAGAGACTCTAGATTAGATGGGTAGATCCCGGTAGATTCAA
TAGGACGGACGTATATAGAGAGGAGAGATCTGTCGGCCTACTCTACTATAGACTCTAATCTAGAG
TCTAGTCCGGGCTTTGACCATGTCTCCCGAGTAATCAGTACATATGGCGCAAGACGGTTTCACAG
ATCGAGGTCGGAATGGGATCGGGTGTTTCACGTCTTGCCGTAGTGCCCGGTCGGAGATGAATGAG
GATTCGAACCTCATGGGCCTCGGCCTCAAATAAATCAATATTTACAGGGCAGGTCAGGCCCCGAT
CCGGCATGATCATCCACGGATACACCTATCCATACCCACCTACCACCCACCTACCTATCCATCCC
CACCTATCCATCCCCACCTACCTATCCATCCCCACCTATCCATCC
Right flanking sequence: Indices 96580 -- 97079
ATCCAGAATAGATGGGGCGGGGCCAGCCCTATCGCCCTATCTAATAGATTGATCGATCGATCGAT
CTGGGGATGGGATGGGTGGGTGGCAGATAAGATAGTTCAGGGCCATCCACACCTATCCATCCACA
CAGATCCATCCAGCCCTATCTAATATATCTGATCGGAGGCATCCATCCCCATCCCCCCTCCAGCC
CTATCTAGAACTCTCTATCTGGTCTATCAAGTCCAACCAATCGATAAGATGAGATATAGTTCTCT
AGAGGGGGGGGGAGTGCCGGGGGGGCCCCATCTCTATATAGGGGGCCCTCACCCGGGGCGCCATA
TCTATAGATAGGGGGCCCCTCTCTCTATATGGCGTAGCCCCCTATCTATTATCCCCCGCCCCTCC
CCCCTATATAGAGATGGCAGATTGTAGATAGTCGAGATATAGAGAGAGAGTGCAGATAGAGAGAG
AGGGGAGGGGGGTCCCCCCTCTCTCTATATGGGAGTTCTCTCTAT
Found at i:96706 original size:14 final size:14
Alignment explanation
Indices: 96687--96721 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
96677 TAGTTCAGGG
**
96687 CCATCCACACCTAT
1 CCATCCACACAGAT
96701 CCATCCACACAGAT
1 CCATCCACACAGAT
96715 CCATCCA
1 CCATCCA
96722 GCCCTATCTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.31, C:0.49, G:0.03, T:0.17
Consensus pattern (14 bp):
CCATCCACACAGAT
Left flanking sequence: Indices 96187 -- 96686
TCGGAATGGGATCGGGTGTTTCACGTCTTGCCGTAGTGCCCGGTCGGAGATGAATGAGGATTCGA
ACCTCATGGGCCTCGGCCTCAAATAAATCAATATTTACAGGGCAGGTCAGGCCCCGATCCGGCAT
GATCATCCACGGATACACCTATCCATACCCACCTACCACCCACCTACCTATCCATCCCCACCTAT
CCATCCCCACCTACCTATCCATCCCCACCTATCCATCCCCATCCCCCCTCCAGCCACTCTATCTG
GTCCCTTATCTTTCTCGGGCATCCATCCACCATCGCCATCCTCTCGGATCCATCCCCCCTCCAGC
CACTCTATCTGGTCCCTTATCTTTCTCGGGCATCCATCCACCATCGCCATCCTCTCGGATCCATC
CCCATCCAGAATAGATGGGGCGGGGCCAGCCCTATCGCCCTATCTAATAGATTGATCGATCGATC
GATCTGGGGATGGGATGGGTGGGTGGCAGATAAGATAGTTCAGGG
Right flanking sequence: Indices 96722 -- 97221
GCCCTATCTAATATATCTGATCGGAGGCATCCATCCCCATCCCCCCTCCAGCCCTATCTAGAACT
CTCTATCTGGTCTATCAAGTCCAACCAATCGATAAGATGAGATATAGTTCTCTAGAGGGGGGGGG
AGTGCCGGGGGGGCCCCATCTCTATATAGGGGGCCCTCACCCGGGGCGCCATATCTATAGATAGG
GGGCCCCTCTCTCTATATGGCGTAGCCCCCTATCTATTATCCCCCGCCCCTCCCCCCTATATAGA
GATGGCAGATTGTAGATAGTCGAGATATAGAGAGAGAGTGCAGATAGAGAGAGAGGGGAGGGGGG
TCCCCCCTCTCTCTATATGGGAGTTCTCTCTATAGGGCCCCCCTCTCCCCCTCTCTCTATATCTT
ATCTTATCTATCTGCCATATCTACCCATATCTCTCTAGGGGGGGGCCCCCTATCTATATCCCCCT
ACCCTAGAACCCCATCTCTACTCTATATCATTGGCACGGATAGTT
Found at i:98318 original size:5 final size:5
Alignment explanation
Indices: 98308--98343 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
98298 GGGCCGCCCG
98308 CAGAT CAGAT CAGAT CAGAT CAGAT CAGAT CAGAT C
1 CAGAT CAGAT CAGAT CAGAT CAGAT CAGAT CAGAT C
98344 TATATAGGTG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.39, C:0.22, G:0.19, T:0.19
Consensus pattern (5 bp):
CAGAT
Left flanking sequence: Indices 97808 -- 98307
TATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTCCAACTTCATGTTCTCGAGTTGCAGA
GAACAATCCGAACTGAGGCAACCTTTCTGGATTTGCTCCGCCTTACGGCCTTCCCATTGTCATTG
CCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCATGCGGACTTGACGTCATCCCCACCTTC
CTCCAGCATATCACTGGCAGTCTCTTGTGAGTGCAGCACTGAGTGGTACGGTTGGTTGGAGTGTC
ATCAATCGCGCCACCCGGTCCCCAGCCCCAGACCCCCTCCCTATATTAAAATCTATATCTATGAG
CCGGGGCCATACATCGAACTATCTGGCCCCGATGGGCGAGAGAGCCCATACATCATATATCTGGG
AGGCCCCCCGATGAGGGCCCCCCCTATATAGATATGGGAGAGAGGGCGATCCCTCGCCCCCTAGA
TTAATATAGAGAGGGGGGCCCGATCTGGGGGGCCCGGGCCGCCCG
Right flanking sequence: Indices 98344 -- 98843
TATATAGGTGGGCGGTGGGCTTTCACTGCTGGTGACATTTCTCTTCACTCAGATCGAGCCCCGAA
TAGATATAGATATAGATCTATAAATCACTGCTCTGCTCTCCCATATAGAGAACTATAGGCTAGGC
TATAGAGAGTCGGGAGTCGGCCCTATCTAGAATTCTGAACGGCCCCCTCTACTCTATAGATTATG
GGGGATCTAGAATCTATATAGAGCGAGAAACCCGACCCATATATGGGAGCCGGTGGAGCTATCTA
TATATGGGGAGCGATAGAGACCAGCAACACAAGACGAGGGTTTCGCTCGTTATAGGACTTAACCA
AACATCTCACGACACGAGCTGACGACAGCCATGCAGCACCTGTATGAACCATACGCTTCACACCA
TCCCGTTAGGGACAGGCACACGTCGTTCATATGTCAAGGGCTGGTAAGGTTCTGCGCGTTGTATC
GAATTAAACCACATGCTCCACCGCTTGTGCAGGCCCCCGTCAATT
Found at i:100082 original size:23 final size:23
Alignment explanation
Indices: 100052--100106 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
100042 TTGGGTTGGG
*
100052 TTGGGAGAAGGAAGAGACAGATA
1 TTGGGAGAAGAAAGAGACAGATA
*
100075 TTGGGAGAAGAAAGAGGCAGATA
1 TTGGGAGAAGAAAGAGACAGATA
*
100098 TTGGAAGAA
1 TTGGGAGAA
100107 AGAGGCCACT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 29 1.00
ACGTcount: A:0.44, C:0.04, G:0.38, T:0.15
Consensus pattern (23 bp):
TTGGGAGAAGAAAGAGACAGATA
Left flanking sequence: Indices 99552 -- 100051
TCTATATAGTGGAGCAGCTTTCATTACATTCAACACCCCAGATAGTCTCATTCAGATCTATATGG
CCAGGCCAGATATGGATCTATATGGCAGGCAGGCAATATCATCTCTTTCTTTCTCCATCTGGATG
AGAATGGTGAATGGAATTCAGGATTTGGCCCGAACTGTTCGGCAGATTCCCACGCGTTACGCACC
CGTTCGCCACTTTGTTCTCAACTGTTCGACTCATCTATCTACGCCCGGCCTTCCAATCCCAATCA
GAGTTCGGGAGGGGGGCCCTGAACTATCTATATGGTCGGAAGCACGGGAGCAACGTTCGACTTGC
ATGTGTTGAGCATATAGCTAGCGTTCGTTCTGAGCCAGGATCAAACTCGTTTTTTGAGTATGATT
CTTTCCGATACAGTAGGCATTGAACCTACCAAACCAATATTGATATGAATATAGAGACTCCCACT
CCACACAAACAGCTAACCCACCACCGTCTAGTCTATTGGGTTGGG
Right flanking sequence: Indices 100107 -- 100606
AGAGGCCACTCCATATAGAGTTCTATAACTCGATATCTGATCTGATCTGTATTCTATATGCCCTC
TATATCTATCTGGCGCTCTTAGATCTGATAGTCTGCCGATACACCAAGATCTAGATGAGGGGCGA
CGCAAACACAGCACCCGATCGAGCCCATGCCCCAACCCCAACTAGAGAGATGGGGATGGCTATAT
AGAGAGATAGAATAGACGATGGCCCCAACCCTCTATATCTATATAGGATGGGGCCATCCCCATCC
AAATGTCTAGATCTAGATGGATAGCATCAGATCTTAGATCTCTATTATATATGTAATACAAACCA
AACCGCCAGTCCAGATCCTCCAGATCTAGATGGATAGCAGACTAGACTAGACTCAAATAGATTTC
CATCCATTCCAGATCGCCCCCCATATCATATAGAGCCGCCATCGGGTCCAGACTCTCAGATCTTA
GATCTCCCCCGCCCAGATCTCTATTCTCTATGCGGATCTCAGCCC
Found at i:100106 original size:20 final size:22
Alignment explanation
Indices: 100055--100112 Score: 75
Period size: 23 Copynumber: 2.7 Consensus size: 22
100045 GGTTGGGTTG
* *
100055 GGAGAAGGAAGAGACAGATATT
1 GGAGAAGAAAGAGGCAGATATT
100077 GGGAGAAGAAAGAGGCAGATATT
1 -GGAGAAGAAAGAGGCAGATATT
100100 -G-GAAGAAAGAGGC
1 GGAGAAGAAAGAGGC
100113 CACTCCATAT
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
20 12 0.36
21 1 0.03
23 20 0.61
ACGTcount: A:0.45, C:0.05, G:0.40, T:0.10
Consensus pattern (22 bp):
GGAGAAGAAAGAGGCAGATATT
Left flanking sequence: Indices 99555 -- 100054
ATATAGTGGAGCAGCTTTCATTACATTCAACACCCCAGATAGTCTCATTCAGATCTATATGGCCA
GGCCAGATATGGATCTATATGGCAGGCAGGCAATATCATCTCTTTCTTTCTCCATCTGGATGAGA
ATGGTGAATGGAATTCAGGATTTGGCCCGAACTGTTCGGCAGATTCCCACGCGTTACGCACCCGT
TCGCCACTTTGTTCTCAACTGTTCGACTCATCTATCTACGCCCGGCCTTCCAATCCCAATCAGAG
TTCGGGAGGGGGGCCCTGAACTATCTATATGGTCGGAAGCACGGGAGCAACGTTCGACTTGCATG
TGTTGAGCATATAGCTAGCGTTCGTTCTGAGCCAGGATCAAACTCGTTTTTTGAGTATGATTCTT
TCCGATACAGTAGGCATTGAACCTACCAAACCAATATTGATATGAATATAGAGACTCCCACTCCA
CACAAACAGCTAACCCACCACCGTCTAGTCTATTGGGTTGGGTTG
Right flanking sequence: Indices 100113 -- 100612
CACTCCATATAGAGTTCTATAACTCGATATCTGATCTGATCTGTATTCTATATGCCCTCTATATC
TATCTGGCGCTCTTAGATCTGATAGTCTGCCGATACACCAAGATCTAGATGAGGGGCGACGCAAA
CACAGCACCCGATCGAGCCCATGCCCCAACCCCAACTAGAGAGATGGGGATGGCTATATAGAGAG
ATAGAATAGACGATGGCCCCAACCCTCTATATCTATATAGGATGGGGCCATCCCCATCCAAATGT
CTAGATCTAGATGGATAGCATCAGATCTTAGATCTCTATTATATATGTAATACAAACCAAACCGC
CAGTCCAGATCCTCCAGATCTAGATGGATAGCAGACTAGACTAGACTCAAATAGATTTCCATCCA
TTCCAGATCGCCCCCCATATCATATAGAGCCGCCATCGGGTCCAGACTCTCAGATCTTAGATCTC
CCCCGCCCAGATCTCTATTCTCTATGCGGATCTCAGCCCTACCCT
Found at i:102537 original size:5 final size:5
Alignment explanation
Indices: 102527--102561 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
102517 ATGAATCGCG
102527 GCACA GCACA GCACA GCACA GCACA GCACA GCACA
1 GCACA GCACA GCACA GCACA GCACA GCACA GCACA
102562 TATATATAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.40, C:0.40, G:0.20, T:0.00
Consensus pattern (5 bp):
GCACA
Left flanking sequence: Indices 102027 -- 102526
TATCTAGATATCTATAGTCACTGATGACTGGTTGTATCACTCCTTTGGATAGTTTGGATATGGAT
GGATGGATGAATAGTGGCTCCCTTACGGGATGGACGGAAGGATGGATGGCTCTCCCCTCTCCCGT
TGGTCTATATAGATCTGCCTCGACCCTGCCCCTGAGAATCTTAGATATATTAGTAGAGGGAGCAG
AGGCCCATATACCATCTCCATCTATAGAGAGGGGTAGGGTAAAGAATCTAGACTCTATAGGGAGG
GTAGGGTAAAGACAGTTATAAATGATGAGGATGAGCCTGATGAGCAAAGAATCGGAGTTCGGGAA
ACAACGGGAAGGATTCGAACCTATATAGTTCCGGGGGGGTCTCACCGCCTCTCGGAGAATAAAGA
GATTTCGGAGCGGAGCATATATATCTATATATAGATCTATATAGATATATATACTTCTATCTCCT
CCATATAGATCTCCTCCGTCTCTCCGATTCAAACCATGAATCGCG
Right flanking sequence: Indices 102562 -- 103061
TATATATAGGGTAGGGTAGGGTAGGGTCCGTTATTGACATTCAATCTTCGGTTCGGGGGATGGGG
ATGCGGCGCCATGTAGATATATAGGGGTCAGTCTCCCAGATAGAGAGCCCCCCCCAACACAATAT
AGAAACATTGTATCTAGAATCTAGAAGATATATAGAGAGGTAGAGGGGGGGGGCCTATATATAGA
TCTTCCCTACTGTATATAGCTGGGCCAACTATCTATATAGTATCTCGGCCTATAGATCTGGGGAG
GTAGAGGGGGAGGTATATCTAATAGAGTCTGATTGGTTGGTGCGGCCTATACCCTATACCCTCTA
CATATAGAGGGGAGGGCCGGAATGGCCATATTCTATATAGGGCGCGACTCGACCTTCACCGGACC
CTAGAGAATAGATCTATATGGTAGGCCCTATCTATATATGGGCACCCTATCTATAGATCTTCCCT
ATCTATATATCCGCCTGTGTATCGGGATCTACTATATAGTTGTTG
Found at i:104385 original size:5 final size:5
Alignment explanation
Indices: 104375--104405 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
104365 GCGACTCGGC
104375 ACCCT ACCCT ACCCT ACCCT ACCCT ACCCT A
1 ACCCT ACCCT ACCCT ACCCT ACCCT ACCCT A
104406 TATATGGCGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.23, C:0.58, G:0.00, T:0.19
Consensus pattern (5 bp):
ACCCT
Left flanking sequence: Indices 103875 -- 104374
GGGGGTCGAGGGCATGGATTGGATATAGATAGGCCCTCTCCTCTCCGGGGCGGCCAATTAAACTA
TATACTGTGCCCCATATCCCATATCTATATAGGGGAGGGGAGGGGAGGGGCCTCGATTTAGCATA
TCAATCGACATAGTTAGATAGGGGCACCCTCTATATGGCGCCCCTCCAGGTAGAATAGAGGGGCT
ATCTGCCCAGCTAAGAGTAGAGCGTATTGAGCATCTATTATATGGTCTAGCTGTGAGTAGTATGT
ATATCAATTGGCACTCGATTGATTTCTGCTTATAGACCCTATAACTAGAACTCGTAGTATGTATA
TTCATTGGCACTCGACCTCCAGATGGAGATATGAACCCGGGCGAATCGAACAGTGACGCATCCAC
CGGTGGACCTACCCCCGTATATAGCTCTGTACGGAGGGGGAGGGTCTCGACCGGCAGTTCTAGTT
ATAGATAGGGCCCCCCTCCAGAGTTTAGTTCTGGGGCGACTCGGC
Right flanking sequence: Indices 104406 -- 104905
TATATGGCGTGGCGTTACGACGAGGAGCCCTATAGTTCTATGGGGGGGAGAGGTGAGCGATAGCG
AACCCATATCTATCTATATATGGACGGACCCACTTCCTTCCGTATCACGTTCATATCGAGAGTCG
GCACCCCTCCCCGCTCTACATAGGTATTAGATTAGATATAGGCCCCCTAGATCTAGATAGGCCCA
ACCCCCCCTCTATATAGATCCATTGGGTAGCTATGAATCTTGGGCAACCGAACCCTAGAGAAATA
AGATATTGGTGTCACCGGTCAGGGCCTTATCTCAGATGAAGTCGAAGTCTTATATCTATTAGAGT
CCCGAGCTCTCGACCAACGGGAGAGGACTCGACCGCCCCCCCCTCTACTCTAGGGTAGGGGTCGA
GGAGGGGGAGGGACCCTATATGGATATCCAATCCCCACCCCCTGTCTATATATATGGGATGGGAG
GACGAGGTGTGAGCGATAGCGAACCGCTCGGCCGAGGGCCCCTAT
Found at i:104955 original size:16 final size:16
Alignment explanation
Indices: 104934--104964 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
104924 TTCCCATCGT
104934 GTTACGTATCTGGTGG
1 GTTACGTATCTGGTGG
104950 GTTACGTATCTGGTG
1 GTTACGTATCTGGTG
104965 ATGATAACAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.13, C:0.13, G:0.35, T:0.39
Consensus pattern (16 bp):
GTTACGTATCTGGTGG
Left flanking sequence: Indices 104434 -- 104933
CCTATAGTTCTATGGGGGGGAGAGGTGAGCGATAGCGAACCCATATCTATCTATATATGGACGGA
CCCACTTCCTTCCGTATCACGTTCATATCGAGAGTCGGCACCCCTCCCCGCTCTACATAGGTATT
AGATTAGATATAGGCCCCCTAGATCTAGATAGGCCCAACCCCCCCTCTATATAGATCCATTGGGT
AGCTATGAATCTTGGGCAACCGAACCCTAGAGAAATAAGATATTGGTGTCACCGGTCAGGGCCTT
ATCTCAGATGAAGTCGAAGTCTTATATCTATTAGAGTCCCGAGCTCTCGACCAACGGGAGAGGAC
TCGACCGCCCCCCCCTCTACTCTAGGGTAGGGGTCGAGGAGGGGGAGGGACCCTATATGGATATC
CAATCCCCACCCCCTGTCTATATATATGGGATGGGAGGACGAGGTGTGAGCGATAGCGAACCGCT
CGGCCGAGGGCCCCTATCTATCTATGGGGGCTGCGTTCCCATCGT
Right flanking sequence: Indices 104965 -- 105464
ATGATAACAAATACAAATGGAAGGGACCCCCCGCCCACTCCCCTTCCCTCCCGTCCTATCGGGCG
GGAGCCTCGGCACGATGCCGCGCATGAGAGAGTTGGATTGAGAGTTGAACTACGATTCCGATCTG
TTGGTACTAAGGCCCCGCCTATATATCTATCTGGGCCCGGCCCCGTTGAGAGCATTACTATACTA
AGACCCAGGCTTCACCGCCCCCCCCCCCCCGATCCGCTCCAACCCAAACCCCATGCCCTCTCTGT
CTCATCGGTTGGGCAAGAGCGCGCAGATGCTCCCTCTCGCTCAAGGAGCTGTGGAGCGGATACCG
ATACCGGCCCCCGTTAGGGTCAATCACATCACCTTGGGACTGGGGAAATCCAGGGACGGGGCCCC
CCCCTCCCCTCTAGAATACCCTACTATTCCATCTATCGACCGCCCATCGGCTAATCTAGAGAGAT
GGGGGGAGGCCCGCCCTATCTATCACCCTCCCCGCAGATAGAGAT
Found at i:107123 original size:18 final size:18
Alignment explanation
Indices: 107096--107150 Score: 101
Period size: 18 Copynumber: 3.1 Consensus size: 18
107086 TCGAGTGATC
*
107096 CTGAGACACAATCTTCAG
1 CTGAGGCACAATCTTCAG
107114 CTGAGGCACAATCTTCAG
1 CTGAGGCACAATCTTCAG
107132 CTGAGGCACAATCTTCAG
1 CTGAGGCACAATCTTCAG
107150 C
1 C
107151 CGAGAATCAC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (18 bp):
CTGAGGCACAATCTTCAG
Left flanking sequence: Indices 106596 -- 107095
CACCTCTATCTCTGATTCCAATGACCCTGAGTATGAGCGACTCTGCCTATTGGGCGAACGGGGAT
CGCTTTCCTAATAGGATCTATCCGAGAGACCCCCATCATACAACAGATATCGAAACGGTCCCAGG
GATACGGAACATGAGTAGATTGAAGCCGGTATGCGGGGGAACTATGGATGGTGCGGCCTGGGATA
TTTGAACAAAACAATGTGTTTCTCCAGTATCCATCATTATCATCTGAGTTCTCCGGTACGAGGAT
TTGGGACGAGGAGAAAGGTGAAAAAAGAAAAGGTACCTCATGGGAGCCCTGCCGAGCTCGAGAAG
GCAGTGAAGGAAGGAGAACCCGGGGGAGCTTCCTCATCCGAACCCCCCGAGATCTCTCCGCTCCC
TCGTCTAGCCCAGATTGCTCGGGGTGATTTGGGAGTTCCGAACCCCGAACAGGAGGTTTTCGAGG
TGATCCTTAGCGGACTAGAGAATGCGAAATCAATCTCGAGTGATC
Right flanking sequence: Indices 107151 -- 107650
CGAGAATCACCCGGGGAAAAGGGAAAGAGCGTAGAGGGGCGGGTGATCGCAGGAAAAGCACGAGA
GCCCCGCTGGAACATCGCGAATCCTCGCACTGTTCTGCTCCATTCGATTGTAATCGCGCTGCAAT
TGGGGCTGTTAGGCGCGATCACCTCTCCCTATATAGCTGGGATCACCACTCCAACCCCGGTGACA
GAGATGACGTCTCTGGATCTGGAAGATTCCATTGAGGTGGTTGGCTCCTTTTCCGATTACCTCGA
GTGGGTGAGATCCGCTCTTACCACACTGGGAGCGAAGATCCTGAGTTTCCTCCATATTACCATTC
AAGTTGCTGGGGGGTGGAGAAGTGGAGAGTCCTCGACCCCCGTGGCGACGGAGCTGCCTATCCCA
AATCTGCCTCCACGTCCACTGGGAAAGTCTGGACCCGGCAAAGGGAGAGGCAGTCGACTCGATTC
GGGGTAAGGGGATCTTGAATCTAGATGACTCAAGTCGCTCGGGTG
Found at i:108264 original size:15 final size:15
Alignment explanation
Indices: 108240--108275 Score: 65
Period size: 15 Copynumber: 2.5 Consensus size: 15
108230 CTATCTACAG
108240 CCCC-CTTTCTCTAT
1 CCCCTCTTTCTCTAT
108254 CCCCTCTTTCTCTAT
1 CCCCTCTTTCTCTAT
108269 CCCCTCT
1 CCCCTCT
108276 ATATCTATGG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 4 0.19
15 17 0.81
ACGTcount: A:0.06, C:0.53, G:0.00, T:0.42
Consensus pattern (15 bp):
CCCCTCTTTCTCTAT
Left flanking sequence: Indices 107740 -- 108239
AGACCGACCACCGGCCGTGGAGCAGATTGTTTTCTTGCGTTCTCTGTATGCGCGGACGCAAGAAA
GTTTGCATTTGCAATATGAGGTGATGAAGGCGCAGGAAGCCCTCTTGAACCCCCACGATCGATCT
ATCTCTCGATTATTCGAGTCCCTGCCCTGAGGAATATAATGGTTCGGGAAGGGGAGTCCCAAGCT
GCCTTGCTGACTAAAGTTAGGGCCTGAAAGATACTCTCGGGGAGATTCAGACTGCTATACCCCAT
ATAGAGAGGGCCGAGTATAGAGAGAAGGGGGGGGGGCGGCAGTAACAGCAGCAACCCGCTCTCTC
CCACACTCTCTCTCTGGAGGGCTCAGTGGTGATGATGGTGGCGGAGAGCTCAGCTGCCCGAAGTG
TGGGTATGGATTTCAATATACGGTAATGGTATCTCCCCATAGATCTGATCCTGCCGAGATAGGGA
TATCTAGCTCTGGGGGCGAGGGGAGGGTTTTCTCTCTATCTACAG
Right flanking sequence: Indices 108276 -- 108775
ATATCTATGGGGGAAGGGGGGAGCTCATCAATACCCTCGATACCGATCGAGGTGAAGGCGGGGGA
GCCTATAGACATCTCCGGAAGAGAGGAGTATGTTTCCCCCCTCGGCTTCTATCTCTCTAGAGGGG
GAGGGGACCAAGACTGTAGATATAGAAAATAAGATTGGGAGCCCCTCGAACAAACAGGCTTCCAC
TCCGAAGCGCCCGCCTCTGTCTGATCTGTCTAATCGCCTCGGCAGGAGAGAGCTCGAGATCCCTC
CGGGATCAAGGATCCCCCGCCTACCCAAGCACTAGCGAATCAAGATTTCGGTAGTGAGAGTGAAT
GTCTTATCTTTCAGCGAGGAGCGAGGGGGCCTAACTCCTCGAGGTTGGGATCTAGATATATCTCT
ATAGTGGCCCGGTGGTGGTTTCTCCCTACTTGAGTGAGTAGGGGGAAACGGGGGGGGGGTTTGGT
GGGCACCCCCCCCAAAGTTAGATTAGAGATATGGCTCCCATTCTC
Found at i:108282 original size:15 final size:15
Alignment explanation
Indices: 108249--108283 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
108239 GCCCCCTTTC
* *
108249 TCTATCCCCTCTTTC
1 TCTATCCCCTCTATA
108264 TCTATCCCCTCTATA
1 TCTATCCCCTCTATA
108279 TCTAT
1 TCTAT
108284 GGGGGAAGGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.14, C:0.40, G:0.00, T:0.46
Consensus pattern (15 bp):
TCTATCCCCTCTATA
Left flanking sequence: Indices 107749 -- 108248
ACCGGCCGTGGAGCAGATTGTTTTCTTGCGTTCTCTGTATGCGCGGACGCAAGAAAGTTTGCATT
TGCAATATGAGGTGATGAAGGCGCAGGAAGCCCTCTTGAACCCCCACGATCGATCTATCTCTCGA
TTATTCGAGTCCCTGCCCTGAGGAATATAATGGTTCGGGAAGGGGAGTCCCAAGCTGCCTTGCTG
ACTAAAGTTAGGGCCTGAAAGATACTCTCGGGGAGATTCAGACTGCTATACCCCATATAGAGAGG
GCCGAGTATAGAGAGAAGGGGGGGGGGCGGCAGTAACAGCAGCAACCCGCTCTCTCCCACACTCT
CTCTCTGGAGGGCTCAGTGGTGATGATGGTGGCGGAGAGCTCAGCTGCCCGAAGTGTGGGTATGG
ATTTCAATATACGGTAATGGTATCTCCCCATAGATCTGATCCTGCCGAGATAGGGATATCTAGCT
CTGGGGGCGAGGGGAGGGTTTTCTCTCTATCTACAGCCCCCTTTC
Right flanking sequence: Indices 108284 -- 108783
GGGGGAAGGGGGGAGCTCATCAATACCCTCGATACCGATCGAGGTGAAGGCGGGGGAGCCTATAG
ACATCTCCGGAAGAGAGGAGTATGTTTCCCCCCTCGGCTTCTATCTCTCTAGAGGGGGAGGGGAC
CAAGACTGTAGATATAGAAAATAAGATTGGGAGCCCCTCGAACAAACAGGCTTCCACTCCGAAGC
GCCCGCCTCTGTCTGATCTGTCTAATCGCCTCGGCAGGAGAGAGCTCGAGATCCCTCCGGGATCA
AGGATCCCCCGCCTACCCAAGCACTAGCGAATCAAGATTTCGGTAGTGAGAGTGAATGTCTTATC
TTTCAGCGAGGAGCGAGGGGGCCTAACTCCTCGAGGTTGGGATCTAGATATATCTCTATAGTGGC
CCGGTGGTGGTTTCTCCCTACTTGAGTGAGTAGGGGGAAACGGGGGGGGGGTTTGGTGGGCACCC
CCCCCAAAGTTAGATTAGAGATATGGCTCCCATTCTCCCCATAGC
Found at i:109110 original size:5 final size:5
Alignment explanation
Indices: 109100--109147 Score: 96
Period size: 5 Copynumber: 9.6 Consensus size: 5
109090 TATCTATATA
109100 TGGCC TGGCC TGGCC TGGCC TGGCC TGGCC TGGCC TGGCC TGGCC TGG
1 TGGCC TGGCC TGGCC TGGCC TGGCC TGGCC TGGCC TGGCC TGGCC TGG
109148 TTAATATATC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.00, C:0.38, G:0.42, T:0.21
Consensus pattern (5 bp):
TGGCC
Left flanking sequence: Indices 108600 -- 109099
TGTCTTATCTTTCAGCGAGGAGCGAGGGGGCCTAACTCCTCGAGGTTGGGATCTAGATATATCTC
TATAGTGGCCCGGTGGTGGTTTCTCCCTACTTGAGTGAGTAGGGGGAAACGGGGGGGGGGTTTGG
TGGGCACCCCCCCCAAAGTTAGATTAGAGATATGGCTCCCATTCTCCCCATAGCATAGTATCTTC
TCCTATCCCCATATATAGATAGGGAAGCCGAGGGCATAGAGTTCAGATAGCTCGATTGACCCTGA
ACTATCTATCGAGACGAGTGCCAATCTCTAAAGGAGCGCGGGGGCCCCTATCTATATACCTATGG
AGAGTAAGATAGTAAGTTACTAGCGCCCTATATATCTATATGGCAACGGGAGAGAAGTGAGCGCA
GTATATATATATATATATTATATATAGTTTCATTGGCACTCGACCGGCCCGCCCAGATCTGATCT
CTCTATATGGGTTTGGGGCACTCGACCAGCAGCCCTATCTATATA
Right flanking sequence: Indices 109148 -- 109647
TTAATATATCATATATCATATCACGACTGCGACTGGTCCTAAGCAACTGGCCGGGTTCTGCCCGT
CCAGAGAGCATGTCTCTCTCTGTCTCTAGATGGAGAATGAAGGACGCCCGCCCGGGGTACTATAT
AGAAATTAGATCGATCGCCCGTCAGTCTGCTTGCTGTCCGCCAAGGATTTGCTGTTCATTCCACT
AAGCAGTTCAATTCGAGGACGAGTATCTCTTGTTTGTTACGTATAGTAGAGACCATCTATATATA
GCCGGCCCGCTCTAATCGTCTCGTCTTTGAATTGAACTGCGTAACATATTCCACCCGTCTTCAGA
TCAGCGCAATACAATACTAAAGGCGCTCTCCCCTACCCTGAACTATATAGATGGCGCCATATAGA
TCGATCTATAGGGGTTGCCACAATCAAGCGCATCCACAATCGCCCTGAACTCTCTATATGGGGGC
GCATCGGGCGGCCCTGCCCCTGCCCTGCCCCTGCCTTATATAGAG
Found at i:109629 original size:11 final size:11
Alignment explanation
Indices: 109613--109637 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
109603 GCATCGGGCG
109613 GCCCTGCCCCT
1 GCCCTGCCCCT
109624 GCCCTGCCCCT
1 GCCCTGCCCCT
109635 GCC
1 GCC
109638 TTATATAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.64, G:0.20, T:0.16
Consensus pattern (11 bp):
GCCCTGCCCCT
Left flanking sequence: Indices 109113 -- 109612
CCTGGCCTGGCCTGGCCTGGCCTGGCCTGGCCTGGTTAATATATCATATATCATATCACGACTGC
GACTGGTCCTAAGCAACTGGCCGGGTTCTGCCCGTCCAGAGAGCATGTCTCTCTCTGTCTCTAGA
TGGAGAATGAAGGACGCCCGCCCGGGGTACTATATAGAAATTAGATCGATCGCCCGTCAGTCTGC
TTGCTGTCCGCCAAGGATTTGCTGTTCATTCCACTAAGCAGTTCAATTCGAGGACGAGTATCTCT
TGTTTGTTACGTATAGTAGAGACCATCTATATATAGCCGGCCCGCTCTAATCGTCTCGTCTTTGA
ATTGAACTGCGTAACATATTCCACCCGTCTTCAGATCAGCGCAATACAATACTAAAGGCGCTCTC
CCCTACCCTGAACTATATAGATGGCGCCATATAGATCGATCTATAGGGGTTGCCACAATCAAGCG
CATCCACAATCGCCCTGAACTCTCTATATGGGGGCGCATCGGGCG
Right flanking sequence: Indices 109638 -- 110137
TTATATAGAGAACTGAGAACTGAGAACTCTCGGGTGAACGGCTTCGAACCCGGGACAACCCTTAT
CTAATCAATGGCAGTTGAGGGCCCGAGGTGAGGGGGTGCGGCTACCGATCCGCGGTAAGATAAGA
ACATTCATTCGTCCACCCGAGGAGAACTATTAACTCAAAGGTCATTCGAGGCCACTCCATATTGC
CATATCGCCATATCGAATGATGAATGGCATATATAGAAATAAATTACTAACTACGGCTACGGGTG
GGTGGAGAGAGATATGAGTGAGGGGGAAGTCGACTCAATCGCGATCGAGTCGGCGGCAATCGGCC
GTCGGGTAAATCGAACTTTCCAACTCCCCGTCCACTATATCCACTATGGATTAGATGGTGTAATC
GACATGATGGGTTGGGAGGCATATGATGCCATACTATAGATTAGATTCTATACGTGACATGATAG
AGGCAGACGTTCCTCGCTATCTCATCTGACGGACGGACTATGGAG
Found at i:110206 original size:5 final size:5
Alignment explanation
Indices: 110198--110231 Score: 61
Period size: 5 Copynumber: 7.0 Consensus size: 5
110188 AACCGATATA
110198 TGGGG TGGGG TGGGG TGGGG TGGGG -GGGG TGGGG
1 TGGGG TGGGG TGGGG TGGGG TGGGG TGGGG TGGGG
110232 CCGACCGACG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 4 0.14
5 24 0.86
ACGTcount: A:0.00, C:0.00, G:0.82, T:0.18
Consensus pattern (5 bp):
TGGGG
Left flanking sequence: Indices 109698 -- 110197
CTTATCTAATCAATGGCAGTTGAGGGCCCGAGGTGAGGGGGTGCGGCTACCGATCCGCGGTAAGA
TAAGAACATTCATTCGTCCACCCGAGGAGAACTATTAACTCAAAGGTCATTCGAGGCCACTCCAT
ATTGCCATATCGCCATATCGAATGATGAATGGCATATATAGAAATAAATTACTAACTACGGCTAC
GGGTGGGTGGAGAGAGATATGAGTGAGGGGGAAGTCGACTCAATCGCGATCGAGTCGGCGGCAAT
CGGCCGTCGGGTAAATCGAACTTTCCAACTCCCCGTCCACTATATCCACTATGGATTAGATGGTG
TAATCGACATGATGGGTTGGGAGGCATATGATGCCATACTATAGATTAGATTCTATACGTGACAT
GATAGAGGCAGACGTTCCTCGCTATCTCATCTGACGGACGGACTATGGAGAGTGTAGTCCAGACT
GACTACCCATAGTTTGTCTACACTCGACCGAACCGAACCGATATA
Right flanking sequence: Indices 110232 -- 110731
CCGACCGACGCCCCTCTATCTATATGGTATGGCAGATCTCTATCTCTATCCCGGGCCATCTATCT
ATACAGTATGCAGTCGATATAGATCTATCTGATCTGGAGGTAGACGAAGGAGCACGTATCATAAT
GGATGAATTGAATGACTGGTTGTATCACTCCTTTGGATAGAATGGATGGATGGGGATGGATGGAG
AGTGTCACTATATAGAGTAGGGCAGGCCGTCGGGCCCCTATCTATATATGGCGATCTCGTAATGT
CAGGCCCCTACAGATAGATATATATATGGCTTGTGGCCGAGGGGACCCGATCCTTTTTAGCTAAT
ACTGGATCAGCTCGATGATATATAGTTATTTCTATATAGTATAGGGGGTAGAAAGTGACCTCATC
TCCATATGATCGGGGGAGCGACCTCAGAATCTCGTTCTTGTGGCCATATAGAGCCGGGGTTAGAT
ATCTATATAGGGGTGACCCATCGCCATGGGATCTATAGGGTCCTT
Found at i:114688 original size:5 final size:5
Alignment explanation
Indices: 114680--114739 Score: 120
Period size: 5 Copynumber: 12.0 Consensus size: 5
114670 AAACAATATA
114680 TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT
1 TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT TCTCT
114730 TCTCT TCTCT
1 TCTCT TCTCT
114740 CTATATAGAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 55 1.00
ACGTcount: A:0.00, C:0.40, G:0.00, T:0.60
Consensus pattern (5 bp):
TCTCT
Left flanking sequence: Indices 114180 -- 114679
TCCCCGAAGGAGGGTTGAGTCTGTCGCGTAAGATAAGAGATAAGCCCTATCTATACTCCCCTATT
CCTAGATGCCCATATAGAGAGAGGGGGAGGTGGGCCATATCTCTATCTGCCTAGGGGCGCATATC
TCAGATCTCCTCCCCCCCCCCGATCATGTATGTCGATAATGAACCCTCTAGAATTCAAGGCCCAG
GCCCTGTTCTCTATTCTCATTTGTCATGTCATCATCGCGATCATATCGACAATGGTCGGTTGGGG
CATCGGTTCAAACTTCAACCCTATCACTATCATATCAATCATATCAATAAAGATTGATATGGCTG
GGCATGGATCGATGGATGAACCTGAAGTCGGTCTCGGCCCTATCTATCTATGGGAGAAGTCAAAC
CGCTAACAACTGATTCGAGCAACCGATTGCCGGCCCTATCTAGATATGGTCATCGCCTATGACGA
TCTGGGGGGCCCTCTCCGTCTCTCAGAACAAAACAAAACAATATA
Right flanking sequence: Indices 114740 -- 115239
CTATATAGAGCGGATAGAGATAGAGCGGCCTCTGATCTGATTGGTTGATTGAGCCGGAACACTCT
GATTGCTCTGATTGGCGGGCTATCGATCCGACGAGATGGTCGGGGTCGGCAACCGAATGGAATAG
CTGGCTGATCCTGCCGGAACTTGGATTGGCAACTATCCCACACTGCTGAGTGTGTGCTGCGGAAC
TATCAACTATCTCGGAAGATCCGACCGGCCGGATGCCCTACCTATCTACCCGATTCTAGTCACCC
ATCGAATGAAACGAGCATACTGTATCGGAATGCCGAAATCGCGCTTCGATGGTTGGTCGCCCTGG
CCCGCCCCCCCCCTATAGATCTTATCTGGGGAGAGCAGCGGATCCGATATTACCATTTCGTTCCG
ATATCTCCACTCCATCTCTGCTCTCCCCATATATAGATAGGGGCCCTTCTATAGATAGGGGGTCC
CCGGCCGGCCTATAGTTCTATGGGGGCTTTATCCCCTATCCAGTC
Found at i:115604 original size:5 final size:5
Alignment explanation
Indices: 115596--115635 Score: 80
Period size: 5 Copynumber: 8.0 Consensus size: 5
115586 CCTCGCCTAT
115596 AGATC AGATC AGATC AGATC AGATC AGATC AGATC AGATC
1 AGATC AGATC AGATC AGATC AGATC AGATC AGATC AGATC
115636 TATATGGCGG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 35 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (5 bp):
AGATC
Left flanking sequence: Indices 115096 -- 115595
AGAGCAGCGGATCCGATATTACCATTTCGTTCCGATATCTCCACTCCATCTCTGCTCTCCCCATA
TATAGATAGGGGCCCTTCTATAGATAGGGGGTCCCCGGCCGGCCTATAGTTCTATGGGGGCTTTA
TCCCCTATCCAGTCGAGTATGCGCCCCTCCCCGGCAGTCAGATATTGCCATATATATAGAGTAGA
GGGGGGCTAGATATTTAGATTGGCCCGGGTACAATTGGTATCTATAATTGGATGGATGGAGATAT
ATAGAGAGAGGGGGGATCCCCCAGATCTATATGGATCTCTTCCTGTCGGAAACAATAAAACGGTC
CGCAAGACCATAGAGATCTGATCTATGGGTGATCAATCCAGATAATAGAGAGGGGATCCCCCTAT
AGCTATAGATCTATATGGCGAGGGGCAGCCCTACCCTATATATAGAACTGAACTTCCACAGGACC
CCCGATGGGATCTATAGGTGATCAATATGAGATCGCCTCGCCTAT
Right flanking sequence: Indices 115636 -- 116135
TATATGGCGGGCGAGGGGGCGCTCGACCTTTGTTTGATTTGAGACTAGCCCTATCTCCCCTATAT
TCTATGGAGGGGGCGGGCTCCCTCCCCCCTCCCTGAACTATCTTATCTATCTGGGGAGGGGGGCC
GGCAACTGGAGAGACATGAGGAGATATCTATATACTCTATAGGGCGGCTATATAGCCTATAGATC
CATCCGGGGCGGGCTATACTCTCTATAGTTGGCCGAGGGCCCCTATCCTATATATGGCAACCAGA
CACAGAAGCCCAAGCGAGAATTGAGTGTTCTGCATTCATTTCTGCCCCATCCAATCCATAGTTCA
GTTGTTATGCTTGGTCCTCTCTATATGGAGTATCTCTATATGGGGTAGGCTGATGTGGGTTAGAA
GACGCTGGATGTGGGTCCATATCTATCTATCTGACGGTGGTTAGAGAAAGAAATATCTGATCTGC
CCTTCAGATATTGGAGAAGAGAGTTAAAACCTTATCTGCCCCCCC
Found at i:118277 original size:23 final size:23
Alignment explanation
Indices: 118251--118320 Score: 131
Period size: 23 Copynumber: 3.0 Consensus size: 23
118241 TTGGGTCACC
118251 GGCCATCCGGTGGTTGTTGATCT
1 GGCCATCCGGTGGTTGTTGATCT
118274 GGCCATCCGGTGGTTGTTGATCT
1 GGCCATCCGGTGGTTGTTGATCT
*
118297 GGCCATCCGGTGGTTGTTAATCT
1 GGCCATCCGGTGGTTGTTGATCT
118320 G
1 G
118321 AATGATGAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
23 46 1.00
ACGTcount: A:0.10, C:0.21, G:0.34, T:0.34
Consensus pattern (23 bp):
GGCCATCCGGTGGTTGTTGATCT
Left flanking sequence: Indices 117751 -- 118250
AGATAGAAGCGGGTAGGGGCGGGCCCCCCCCCCGATGGCGGCTCGGCTCCCAGATCTATATAGGG
GCTCGGCTCTATATCTATATGGGCATCCATCGAGGTCTATCTATTCTATACGTAACATGATATGA
TCGCCCTATCTATTCCATCCAACATGATCGATCGCATGCCCTATCTATTCCTATTCTAACATGAT
CGATCCCCCCCCCCTCTCTAGATTTCTCGGCTCCCAGATCTATATATAGGGGGGGTACCTATCTG
GCCCCTGATCACAGGGAATTTCAAGGGGGGTCGGCCGGTTCCATATCTAGATAGGGGGCTACGTT
CACCCCTCACCCGACGTGTTTGCAATGTTTGTACACGATGTCATGAATCACTCCAATCCCAATCC
CAGTCTAAGCTGCTGCCAACCAGCCGTCACTGCCTTCCATCCATTATCTAGTTGGGCTGATCACG
CCCTATCTATATATCTTCCCTATATATCTAACTGGTTGGGTCACC
Right flanking sequence: Indices 118321 -- 118820
AATGATGAATGACCCGAAGTCAGTTGGTGGACGGGCCCTCCCCCTCCTCGATCTATCGATCGATC
GCTCTCCCCCCGCCCAATACCGGTAGGTGGGCGGCCAATACCGGTGGGTGGTAGCACCAATACCA
ATCAATAGGTTGGGTAGGTGGTGGCACGGTGGTCGAGCGCAAACGCCGCCCCCCCATAGTCTCAT
TCAGGGCCGGGCCCTCGTCCTATCGGCTCTCAATATCAATATCCCATCTATATAGAGAGGGGGGG
CGGGGAGTGCCTCCGTTCCCTAGAGGCGGGGGAACTATGAACTAGAGATAGTCAGTCCTCTGCGG
CCATATCTCTCTATATCGAGCGTCCGGTCGAGCCCCATATACAATATAGAATACGCCCCAACATG
ACTCTATATATATCGATATTGTTCCTCGCGCTCCTCGCCTCCCCCAGCTATATAGAGTAGACCGC
CGGGCGGGTGCCCCATAGATGGATAGGGCCCTCCAGCCCTATTCA
Found at i:118448 original size:22 final size:21
Alignment explanation
Indices: 118399--118449 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
118389 CTCCCCCCGC
*
118399 CCAATACCGGTAGGTGGGCGG
1 CCAATACCGGTAGGTGGGCGA
*
118420 CCAATACCGGTGGGTGGTAGC-A
1 CCAATACCGGTAGGTGG--GCGA
118442 CCAATACC
1 CCAATACC
118450 AATCAATAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
21 16 0.62
22 8 0.31
23 2 0.08
ACGTcount: A:0.24, C:0.27, G:0.33, T:0.16
Consensus pattern (21 bp):
CCAATACCGGTAGGTGGGCGA
Left flanking sequence: Indices 117899 -- 118398
CCAACATGATCGATCGCATGCCCTATCTATTCCTATTCTAACATGATCGATCCCCCCCCCCTCTC
TAGATTTCTCGGCTCCCAGATCTATATATAGGGGGGGTACCTATCTGGCCCCTGATCACAGGGAA
TTTCAAGGGGGGTCGGCCGGTTCCATATCTAGATAGGGGGCTACGTTCACCCCTCACCCGACGTG
TTTGCAATGTTTGTACACGATGTCATGAATCACTCCAATCCCAATCCCAGTCTAAGCTGCTGCCA
ACCAGCCGTCACTGCCTTCCATCCATTATCTAGTTGGGCTGATCACGCCCTATCTATATATCTTC
CCTATATATCTAACTGGTTGGGTCACCGGCCATCCGGTGGTTGTTGATCTGGCCATCCGGTGGTT
GTTGATCTGGCCATCCGGTGGTTGTTAATCTGAATGATGAATGACCCGAAGTCAGTTGGTGGACG
GGCCCTCCCCCTCCTCGATCTATCGATCGATCGCTCTCCCCCCGC
Right flanking sequence: Indices 118450 -- 118949
AATCAATAGGTTGGGTAGGTGGTGGCACGGTGGTCGAGCGCAAACGCCGCCCCCCCATAGTCTCA
TTCAGGGCCGGGCCCTCGTCCTATCGGCTCTCAATATCAATATCCCATCTATATAGAGAGGGGGG
GCGGGGAGTGCCTCCGTTCCCTAGAGGCGGGGGAACTATGAACTAGAGATAGTCAGTCCTCTGCG
GCCATATCTCTCTATATCGAGCGTCCGGTCGAGCCCCATATACAATATAGAATACGCCCCAACAT
GACTCTATATATATCGATATTGTTCCTCGCGCTCCTCGCCTCCCCCAGCTATATAGAGTAGACCG
CCGGGCGGGTGCCCCATAGATGGATAGGGCCCTCCAGCCCTATTCATTTCTCTGGGTGCCTATGC
AGATCTATATAGAGGGGAGGGGACCCGGATCTAGATATATGATATATGGGGGGGGTATGGGTGCC
TATGCCCAGTCGGGGACCCGGATCTCGGGGGTATTATCTGGGTGG
Found at i:120295 original size:23 final size:23
Alignment explanation
Indices: 120266--120312 Score: 85
Period size: 23 Copynumber: 2.0 Consensus size: 23
120256 ATAGACTCTA
120266 TATAGTAATACTCCAGTCGAGAC
1 TATAGTAATACTCCAGTCGAGAC
*
120289 TATAGTAATACTCCGGTCGAGAC
1 TATAGTAATACTCCAGTCGAGAC
120312 T
1 T
120313 CTGCCTATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (23 bp):
TATAGTAATACTCCAGTCGAGAC
Left flanking sequence: Indices 119766 -- 120265
TCTATCTATATATGGCAGCTATCTGGGGCTTTCGATCTATAGGGGGAATTCTACATATAGAGGGG
GGGGGGTCGCCCCGGCAGGCAGGTCAGGCCCTATAGATCTCTGGGGAGGAGATATCTATATGGGG
CCCGGCCCCCCTATCTCTCTATGGGATGGGATAGGCTTTGGATAGGCTTAAGCCGCTAGGCCCAG
AATCGGGCCGGCTATATAGATCTAGATAGAGGCAGGCCCATCTCCATCTATACTCTCGCCTACGC
GGCGACTATCTATAGTCTATAGTTCTAGTCGGCACCCTCCCCCTCCTAGTTCAGATTAGATTAGA
TTAGATATATGGCGACCCCGGGACTATAGAGATCTATATCTGCTGCTAAGCTGGCTTATCCGCCT
ATGCTGAAAGGAACCATCCAATCGTCCGGTCGAGACCGGTCGAGACTCTGCCTATCTCTCTGGAC
TCTATATAGTATATAGTAATACTCCGGTCGAGACTATAGACTCTA
Right flanking sequence: Indices 120313 -- 120812
CTGCCTATCTGTCTGGACTATTAGACTCTATATATCATACCTAACTCCCCTCTCCCGACGGCCCC
CTATCTATCCCCCCTATATATAGATCTGGGAGCCGAGAAATCTAGAGAGGGGGGGGGGGGGGGCG
CCCACTCGATCGACACACTCGATCGACAAATTGATTCATTCGGGTCAATTCCAATTCCCTCAACC
CCGCCAACAAGATTCCTCTCGGTGATTGATGTTCGGAATGAGCGAGTCGTCCCGATGCCCATATG
ACTACCCGATTACAAGACCACCTTCACTTCCAAGATCCCAAGTCCTAAGATGTGACAGAGATCCA
AGATCGATTCCCCGTAATATCTGAATGAAACTCTCTCTATCTCTCTCTCTATCTCTATCTGAATG
AGAATATCTAGAGTTCAGATAGAGATAGAGATATAGAGAGAGATATATATGGCCCCTATAGATTG
AAGGGGCCAGGGCATATAGAATATAGCGATACGAACGATCCGATC
Found at i:120463 original size:13 final size:13
Alignment explanation
Indices: 120445--120470 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
120435 GGGGGGCGCC
120445 CACTCGATCGACA
1 CACTCGATCGACA
120458 CACTCGATCGACA
1 CACTCGATCGACA
120471 AATTGATTCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.38, G:0.15, T:0.15
Consensus pattern (13 bp):
CACTCGATCGACA
Left flanking sequence: Indices 119945 -- 120444
AAGCCGCTAGGCCCAGAATCGGGCCGGCTATATAGATCTAGATAGAGGCAGGCCCATCTCCATCT
ATACTCTCGCCTACGCGGCGACTATCTATAGTCTATAGTTCTAGTCGGCACCCTCCCCCTCCTAG
TTCAGATTAGATTAGATTAGATATATGGCGACCCCGGGACTATAGAGATCTATATCTGCTGCTAA
GCTGGCTTATCCGCCTATGCTGAAAGGAACCATCCAATCGTCCGGTCGAGACCGGTCGAGACTCT
GCCTATCTCTCTGGACTCTATATAGTATATAGTAATACTCCGGTCGAGACTATAGACTCTATATA
GTAATACTCCAGTCGAGACTATAGTAATACTCCGGTCGAGACTCTGCCTATCTGTCTGGACTATT
AGACTCTATATATCATACCTAACTCCCCTCTCCCGACGGCCCCCTATCTATCCCCCCTATATATA
GATCTGGGAGCCGAGAAATCTAGAGAGGGGGGGGGGGGGGGCGCC
Right flanking sequence: Indices 120471 -- 120970
AATTGATTCATTCGGGTCAATTCCAATTCCCTCAACCCCGCCAACAAGATTCCTCTCGGTGATTG
ATGTTCGGAATGAGCGAGTCGTCCCGATGCCCATATGACTACCCGATTACAAGACCACCTTCACT
TCCAAGATCCCAAGTCCTAAGATGTGACAGAGATCCAAGATCGATTCCCCGTAATATCTGAATGA
AACTCTCTCTATCTCTCTCTCTATCTCTATCTGAATGAGAATATCTAGAGTTCAGATAGAGATAG
AGATATAGAGAGAGATATATATGGCCCCTATAGATTGAAGGGGCCAGGGCATATAGAATATAGCG
ATACGAACGATCCGATCGAGTCAGTCCGGTCAGTTGTATCACGTATATAATAGAATAGACATAGA
ACTATATTGAGTATCCATAGGCGCCCGCCCCAAAGATAGTTCAGAGATGGCCCCCCCCCACCCCG
AACTAGAGATTTAGATAGGGGGATAGGGCTCCCAAACCATAGAAG
Found at i:120685 original size:12 final size:12
Alignment explanation
Indices: 120668--120693 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
120658 CTGAATGAAA
120668 CTCTCTCTATCT
1 CTCTCTCTATCT
120680 CTCTCTCTATCT
1 CTCTCTCTATCT
120692 CT
1 CT
120694 ATCTGAATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.08, C:0.42, G:0.00, T:0.50
Consensus pattern (12 bp):
CTCTCTCTATCT
Left flanking sequence: Indices 120168 -- 120667
ACCATCCAATCGTCCGGTCGAGACCGGTCGAGACTCTGCCTATCTCTCTGGACTCTATATAGTAT
ATAGTAATACTCCGGTCGAGACTATAGACTCTATATAGTAATACTCCAGTCGAGACTATAGTAAT
ACTCCGGTCGAGACTCTGCCTATCTGTCTGGACTATTAGACTCTATATATCATACCTAACTCCCC
TCTCCCGACGGCCCCCTATCTATCCCCCCTATATATAGATCTGGGAGCCGAGAAATCTAGAGAGG
GGGGGGGGGGGGGCGCCCACTCGATCGACACACTCGATCGACAAATTGATTCATTCGGGTCAATT
CCAATTCCCTCAACCCCGCCAACAAGATTCCTCTCGGTGATTGATGTTCGGAATGAGCGAGTCGT
CCCGATGCCCATATGACTACCCGATTACAAGACCACCTTCACTTCCAAGATCCCAAGTCCTAAGA
TGTGACAGAGATCCAAGATCGATTCCCCGTAATATCTGAATGAAA
Right flanking sequence: Indices 120694 -- 121193
ATCTGAATGAGAATATCTAGAGTTCAGATAGAGATAGAGATATAGAGAGAGATATATATGGCCCC
TATAGATTGAAGGGGCCAGGGCATATAGAATATAGCGATACGAACGATCCGATCGAGTCAGTCCG
GTCAGTTGTATCACGTATATAATAGAATAGACATAGAACTATATTGAGTATCCATAGGCGCCCGC
CCCAAAGATAGTTCAGAGATGGCCCCCCCCCACCCCGAACTAGAGATTTAGATAGGGGGATAGGG
CTCCCAAACCATAGAAGATAAGGATATAATAGAGAGGGGCTCGGGAGCCGAGATAAGATAGAATA
GAGAGGGGGGGGGGAGGGGGCCATCTCTCTATATAGACTAGCCATCTCTCTATACTAGCCATCTA
TCGGGCCAACTCTATATCTATATAGAGATGTCGAGGGCCCCCATAGATGGATAGGGGGCCCATCG
GGGCCAGATATATGATTCCGGTGGAGAAGAGAAAGGGCCCCCTCG
Found at i:122151 original size:25 final size:25
Alignment explanation
Indices: 122117--122164 Score: 96
Period size: 25 Copynumber: 1.9 Consensus size: 25
122107 CCCCCGATGG
122117 CGGCTCCCAGATCTATATAGGGGCT
1 CGGCTCCCAGATCTATATAGGGGCT
122142 CGGCTCCCAGATCTATATAGGGG
1 CGGCTCCCAGATCTATATAGGGG
122165 GAGTGGGCGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.21, C:0.27, G:0.29, T:0.23
Consensus pattern (25 bp):
CGGCTCCCAGATCTATATAGGGGCT
Left flanking sequence: Indices 121617 -- 122116
TTTATGGAATTATCATAGCAGGTTGGTCCAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATA
CTAGGGCCGATGGGTCAAAAATTGGTTCGTGCCGCAGGTGCTGAACGATCTACTCTACACAGGTG
TGGGCCGCGAAACGAAGCGGAATATGGATTCTGGATTCACTCCTCCAACGATGAGAGTCTATCAC
GCGAGTCTGCTGCAAATCCGGTAAGATGAAGAGCCGCAAAAGTATGGAGATAGGAAGGCACGAAG
AGTTGGGCGTATGGAGCCAATTCTCGACACGCAATGGGAACGATGTACCCTAGAGAGATGGCCCC
ATCACCCCTATATATGTAGAGTATAGGCGCCCGCCCAGATCCCAGGTCTCTATAGATTGGAGATT
GGATGGGGCCATCTCTCTATACTAGCGGGGGGCCCTCTCTCTCTATGGGGCGCTAGTCGGCACCC
CCCTCCCTGAACTATCTTATCTATCCGGAGGGCCCCCCCCGATGG
Right flanking sequence: Indices 122165 -- 122664
GAGTGGGCGGCGTCGGCTCTCGTCCGACCCCTATTGATATAGATGGGAGGACGAGGGGGAGGAGC
CCTATATAGAACTAACTATATAGAGATATAGACGGGCCTCCTGACGTCCACCCCCACCCTCTAGA
TCATATCTATATGCCCCTATAGAGAACTCTATGGGGGAGAGGGACTCGCCATAGAAAGAAATAGA
TTGGAGAGGCCCCCCCTATATAGATTCTCTATGGGGGATAGAGGGAAGTCGAGGAGGCCCGCCTA
TATCTTATCTATATAGGGCTCCCCGTCCACAGCGGAGGGGTTGGGTGCACGAATGCCCCGGGCGC
TGTCTCCGTTCCTTACCCAGAAACATCATGGTGAACCTCTCCTTGCGATCGGGATGAGGTAGGTG
CCTCCCAGCCGGCGGATCGAATCGGAGTTTCCTCGGGTGGCCACCGACCTACAGCGATCCCCAAA
CTCCCGTGCTTGGTGGAGAAGAAGCGAACAAAGTGCTGCCTCCTT
Found at i:124736 original size:5 final size:5
Alignment explanation
Indices: 124726--124753 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
124716 ACATATATGG
124726 CAAGT CAAGT CAAGT CAAGT CAAGT CAA
1 CAAGT CAAGT CAAGT CAAGT CAAGT CAA
124754 ATTGGGCAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.43, C:0.21, G:0.18, T:0.18
Consensus pattern (5 bp):
CAAGT
Left flanking sequence: Indices 124226 -- 124725
TGTATGTGCGGGTGTAGCTCGGCCGACCCCTATCTATACTCTGTCCTCGACCCGGGTAGGGGCCG
GGGTGCCCCCTCCCCCCGATATCTTAATAGGAAGGGGAGGGCGGGGGTGAGATATAGATATACCC
GCCTAACCCCAGACCAAGGCGGGGGTGCCCCCCGGGCCTCCCCGAGATAACAGAATCCTTCGGAG
GAAGGTACCTTGCCTCCCCGAATACACTTGCCTCCCCGGGTGCCTCCCCGCCTTGATAGAGAGGG
GAGAGGGAGAGGGGGTCCGCCTCTCCACCCAGGGCACCCATCTATATAGATTCTTCACCACTCTT
CCTATATCCCCAGAATCAATCTATAGTAGAGTAGAGGGCCCAACCCCATCCCCATCTAGAGAGAT
CATATCTGGGCGGGCGCCTATAGTTCAGATAGGGGTCCTCGGATAGTCCAGACGATCTAGATTCT
ATATGCCCTACCCTATAGTTCTCTCTATCCGGCAAACATATATGG
Right flanking sequence: Indices 124754 -- 125253
ATTGGGCAATCTATAGTCCAGTCTAGTCTAGGCTCCCTGAACTCTGAACTAGGCGGATCATAGAG
AGTGGATAGATAGGCCCCATATAGAGTATAGAGAGGAGGTTGGGGTCGAGGTCAGGTCATTTAGA
TCTATATAGTAGGCCGTCGGCTCCCTCCCTCTATAGAAAACTATAGGCCCTCGGGGGCGCCTCTA
TCTATCTAGATAGCCGCCGTTCACATATCAGTATGATATGATTGGCATCGGGACGGTAGAAGATT
AGGGCCCTAGATCCTAGATATATGGCAACCCAACCCACAACTCTCCTCTATCCCCTAGTGCTATT
GCCAGATAGAGTAGGCCGAACTATAACTCAACTCGATCCCCCCGTCTTACTCGACCTGCCTATCG
CCTATCTATATAGGGGAGGGGCGCATAAATGCTTGACCTCGACCTGTTGCCTAGATATTCTATAG
AGGGCGCCGACAGCATTTCTTTATGATTATGATCCATGCTCGAGG
Found at i:125396 original size:8 final size:8
Alignment explanation
Indices: 125383--125597 Score: 83
Period size: 8 Copynumber: 26.9 Consensus size: 8
125373 ACTCCTCTAT
125383 ATAGATAG
1 ATAGATAG
125391 ATAGATAG
1 ATAGATAG
*
125399 ATAGAGAG
1 ATAGATAG
* *
125407 ATAGAGAT
1 ATAGATAG
*
125415 ATAGAGAG
1 ATAGATAG
* *
125423 AGATATAG
1 ATAGATAG
* *
125431 AGATATAG
1 ATAGATAG
*
125439 AGAGATAG
1 ATAGATAG
*
125447 --AGATAT
1 ATAGATAG
**
125453 ATATCTGAG
1 ATAGAT-AG
* *
125462 AGAGATAT
1 ATAGATAG
* *
125470 AGAGGTAG
1 ATAGATAG
* *
125478 ATAGAGAT
1 ATAGATAG
125486 ATAGATAG
1 ATAGATAG
* *
125494 AGATATAG
1 ATAGATAG
*
125502 AGAGATAG
1 ATAGATAG
* * *
125510 AGATATAT
1 ATAGATAG
* *
125518 ATCTGAGAG
1 AT-AGATAG
* *
125527 AGATATAG
1 ATAGATAG
* *
125535 AGATATAG
1 ATAGATAG
*
125543 ATAGAGAG
1 ATAGATAG
* *
125551 AGATATAG
1 ATAGATAG
* *
125559 ATATAGAG
1 ATAGATAG
125567 ATAGATAG
1 ATAGATAG
125575 ATAGATAG
1 ATAGATAG
125583 ATAGATAG
1 ATAGATAG
125591 ATAGATA
1 ATAGATA
125598 TAGGCAGAGA
Statistics
Matches: 156, Mismatches: 47, Indels: 8
0.74 0.22 0.04
Matches are distributed among these distances:
6 5 0.03
8 144 0.92
9 7 0.04
ACGTcount: A:0.48, C:0.01, G:0.27, T:0.23
Consensus pattern (8 bp):
ATAGATAG
Left flanking sequence: Indices 124883 -- 125382
ATCTATATAGTAGGCCGTCGGCTCCCTCCCTCTATAGAAAACTATAGGCCCTCGGGGGCGCCTCT
ATCTATCTAGATAGCCGCCGTTCACATATCAGTATGATATGATTGGCATCGGGACGGTAGAAGAT
TAGGGCCCTAGATCCTAGATATATGGCAACCCAACCCACAACTCTCCTCTATCCCCTAGTGCTAT
TGCCAGATAGAGTAGGCCGAACTATAACTCAACTCGATCCCCCCGTCTTACTCGACCTGCCTATC
GCCTATCTATATAGGGGAGGGGCGCATAAATGCTTGACCTCGACCTGTTGCCTAGATATTCTATA
GAGGGCGCCGACAGCATTTCTTTATGATTATGATCCATGCTCGAGGCCGAGGAAAACGAGAGCCC
CCTATCTGAACGGTATATAGATTCTATTCCATATAGAGGGGAGGGTGCCGACGGAACGTTATGCT
CTGATCGAGGCCGAGCGGCTATAGAGAGAGTAGGCACTCCTCTAT
Right flanking sequence: Indices 125598 -- 126097
TAGGCAGAGAGTTTCGATCGAGATATAGATATCTATATCTTATCTGATATTGATATTTGGGGAGG
GCGAGGACCCAGATATAGAAGGCCCTACCCTATCTATCTGCTCGATTGAAGCGGGCCCTGCTCGA
TTGAAGCATCTCCCGGGGTCGATTGAAACGGGGCCATCTCTATATAGATCTAGGTAGGACCGATA
GGCCCGAGTAGAGAAGGGTTAGACTCGGCACTCCCCCCCAGATCTATATAGAGATGGCCCCTCTC
TCCCCTATATATAGATATGGGCCCCTCGGCCCCACTCTCTATATATGATATGATAACTCTAGATG
GCGGGCGAGAAGGAGGAGCGCCCGGCGGAGGCCCCCTATCTTGATTTGGGTTGGGACCCGATAGA
CTGCCATAAGGATAGAGTTCTATAGGGGCAGCTCAGTCCCATATCTATATAGAGGCGCTCCGATC
CGGGAGCCGGGGCGGGCGGTTGTGGATTAGATTGCAAATGAATAT
Found at i:125400 original size:12 final size:12
Alignment explanation
Indices: 125383--125597 Score: 83
Period size: 12 Copynumber: 17.9 Consensus size: 12
125373 ACTCCTCTAT
125383 ATAGATAGATAG
1 ATAGATAGATAG
*
125395 ATAGATAGAGAG
1 ATAGATAGATAG
* *
125407 ATAGAGATATAG
1 ATAGATAGATAG
* * *
125419 AGAGAGATATAG
1 ATAGATAGATAG
* * *
125431 AGATATAGAGAG
1 ATAGATAGATAG
*
125443 ATAG--AGATAT
1 ATAGATAGATAG
** *
125453 ATATCTGAGAGAG
1 ATAGAT-AGATAG
* * *
125466 ATATAGAGGTAG
1 ATAGATAGATAG
* *
125478 ATAGAGATATAG
1 ATAGATAGATAG
* *
125490 ATAGAGATATAG
1 ATAGATAGATAG
* * *
125502 AGAGATAGAGAT
1 ATAGATAGATAG
* * *
125514 ATATATCTGAGAG
1 ATAGAT-AGATAG
* * * *
125527 AGATATAGAGAT
1 ATAGATAGATAG
*
125539 ATAGATAGAGAG
1 ATAGATAGATAG
* * *
125551 AGATATAGATAT
1 ATAGATAGATAG
*
125563 AGAGATAGATAG
1 ATAGATAGATAG
125575 ATAGATAGATAG
1 ATAGATAGATAG
125587 ATAGATAGATA
1 ATAGATAGATA
125598 TAGGCAGAGA
Statistics
Matches: 154, Mismatches: 45, Indels: 8
0.74 0.22 0.04
Matches are distributed among these distances:
10 7 0.05
12 130 0.84
13 17 0.11
ACGTcount: A:0.48, C:0.01, G:0.27, T:0.23
Consensus pattern (12 bp):
ATAGATAGATAG
Left flanking sequence: Indices 124883 -- 125382
ATCTATATAGTAGGCCGTCGGCTCCCTCCCTCTATAGAAAACTATAGGCCCTCGGGGGCGCCTCT
ATCTATCTAGATAGCCGCCGTTCACATATCAGTATGATATGATTGGCATCGGGACGGTAGAAGAT
TAGGGCCCTAGATCCTAGATATATGGCAACCCAACCCACAACTCTCCTCTATCCCCTAGTGCTAT
TGCCAGATAGAGTAGGCCGAACTATAACTCAACTCGATCCCCCCGTCTTACTCGACCTGCCTATC
GCCTATCTATATAGGGGAGGGGCGCATAAATGCTTGACCTCGACCTGTTGCCTAGATATTCTATA
GAGGGCGCCGACAGCATTTCTTTATGATTATGATCCATGCTCGAGGCCGAGGAAAACGAGAGCCC
CCTATCTGAACGGTATATAGATTCTATTCCATATAGAGGGGAGGGTGCCGACGGAACGTTATGCT
CTGATCGAGGCCGAGCGGCTATAGAGAGAGTAGGCACTCCTCTAT
Right flanking sequence: Indices 125598 -- 126097
TAGGCAGAGAGTTTCGATCGAGATATAGATATCTATATCTTATCTGATATTGATATTTGGGGAGG
GCGAGGACCCAGATATAGAAGGCCCTACCCTATCTATCTGCTCGATTGAAGCGGGCCCTGCTCGA
TTGAAGCATCTCCCGGGGTCGATTGAAACGGGGCCATCTCTATATAGATCTAGGTAGGACCGATA
GGCCCGAGTAGAGAAGGGTTAGACTCGGCACTCCCCCCCAGATCTATATAGAGATGGCCCCTCTC
TCCCCTATATATAGATATGGGCCCCTCGGCCCCACTCTCTATATATGATATGATAACTCTAGATG
GCGGGCGAGAAGGAGGAGCGCCCGGCGGAGGCCCCCTATCTTGATTTGGGTTGGGACCCGATAGA
CTGCCATAAGGATAGAGTTCTATAGGGGCAGCTCAGTCCCATATCTATATAGAGGCGCTCCGATC
CGGGAGCCGGGGCGGGCGGTTGTGGATTAGATTGCAAATGAATAT
Found at i:125408 original size:16 final size:16
Alignment explanation
Indices: 125383--125595 Score: 109
Period size: 16 Copynumber: 13.3 Consensus size: 16
125373 ACTCCTCTAT
*
125383 ATAGATAGATAGATAG
1 ATAGAGAGATAGATAG
125399 ATAGAGAGATAG--AG
1 ATAGAGAGATAGATAG
* *
125413 ATATAGAGAGAGAT--
1 ATAGAGAGATAGATAG
* *
125427 ATAGAGATATAGAGAG
1 ATAGAGAGATAGATAG
* * *
125443 ATAGAGATATATATCTG
1 ATAGAGAGATAGAT-AG
* *
125460 AGAGAGATATAGAGGTAG
1 ATAGAGAGATAGA--TAG
125478 AT--AGAGAT--ATAG
1 ATAGAGAGATAGATAG
* *
125490 ATAGAGATATAGAGAG
1 ATAGAGAGATAGATAG
* * *
125506 ATAGAGATATATATCTG
1 ATAGAGAGATAGAT-AG
* *
125523 AGAGAGATATAGAGATATAG
1 ATAGAGAGAT--AG--ATAG
* *
125543 ATAGAGAGAGATATAG
1 ATAGAGAGATAGATAG
*
125559 ATATAGAGATAGATAG
1 ATAGAGAGATAGATAG
*
125575 ATAGATAGATAGATAG
1 ATAGAGAGATAGATAG
125591 ATAGA
1 ATAGA
125596 TATAGGCAGA
Statistics
Matches: 149, Mismatches: 32, Indels: 32
0.70 0.15 0.15
Matches are distributed among these distances:
12 5 0.03
14 28 0.19
16 79 0.53
17 22 0.15
18 3 0.02
19 2 0.01
20 8 0.05
21 2 0.01
ACGTcount: A:0.48, C:0.01, G:0.28, T:0.23
Consensus pattern (16 bp):
ATAGAGAGATAGATAG
Left flanking sequence: Indices 124883 -- 125382
ATCTATATAGTAGGCCGTCGGCTCCCTCCCTCTATAGAAAACTATAGGCCCTCGGGGGCGCCTCT
ATCTATCTAGATAGCCGCCGTTCACATATCAGTATGATATGATTGGCATCGGGACGGTAGAAGAT
TAGGGCCCTAGATCCTAGATATATGGCAACCCAACCCACAACTCTCCTCTATCCCCTAGTGCTAT
TGCCAGATAGAGTAGGCCGAACTATAACTCAACTCGATCCCCCCGTCTTACTCGACCTGCCTATC
GCCTATCTATATAGGGGAGGGGCGCATAAATGCTTGACCTCGACCTGTTGCCTAGATATTCTATA
GAGGGCGCCGACAGCATTTCTTTATGATTATGATCCATGCTCGAGGCCGAGGAAAACGAGAGCCC
CCTATCTGAACGGTATATAGATTCTATTCCATATAGAGGGGAGGGTGCCGACGGAACGTTATGCT
CTGATCGAGGCCGAGCGGCTATAGAGAGAGTAGGCACTCCTCTAT
Right flanking sequence: Indices 125596 -- 126095
TATAGGCAGAGAGTTTCGATCGAGATATAGATATCTATATCTTATCTGATATTGATATTTGGGGA
GGGCGAGGACCCAGATATAGAAGGCCCTACCCTATCTATCTGCTCGATTGAAGCGGGCCCTGCTC
GATTGAAGCATCTCCCGGGGTCGATTGAAACGGGGCCATCTCTATATAGATCTAGGTAGGACCGA
TAGGCCCGAGTAGAGAAGGGTTAGACTCGGCACTCCCCCCCAGATCTATATAGAGATGGCCCCTC
TCTCCCCTATATATAGATATGGGCCCCTCGGCCCCACTCTCTATATATGATATGATAACTCTAGA
TGGCGGGCGAGAAGGAGGAGCGCCCGGCGGAGGCCCCCTATCTTGATTTGGGTTGGGACCCGATA
GACTGCCATAAGGATAGAGTTCTATAGGGGCAGCTCAGTCCCATATCTATATAGAGGCGCTCCGA
TCCGGGAGCCGGGGCGGGCGGTTGTGGATTAGATTGCAAATGAAT
Found at i:125577 original size:63 final size:63
Alignment explanation
Indices: 125401--125567 Score: 243
Period size: 63 Copynumber: 2.7 Consensus size: 63
125391 ATAGATAGAT
* *
125401 AGAGAGATAGAGATATAG--AGAGAGATATAGAGATATAGAGAGATAGAGATATATATCTGAG
1 AGAGATATAGAGATATAGATAGAGAGAGATAGAGATATAGAGAGATAGAGATATATATCTGAG
* *
125462 AGAGATATAGAG--GTAGATAGAGATATAGATAGAGATATAGAGAGATAGAGATATATATCTGAG
1 AGAGATATAGAGATATAGATAGAG--AGAGATAGAGATATAGAGAGATAGAGATATATATCTGAG
*
125525 AGAGATATAGAGATATAGATAGAGAGAGATATAGATATAGAGA
1 AGAGATATAGAGATATAGATAGAGAGAGATAGAGATATAGAGA
125568 TAGATAGATA
Statistics
Matches: 93, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
59 3 0.03
61 15 0.16
63 66 0.71
65 9 0.10
ACGTcount: A:0.48, C:0.01, G:0.29, T:0.22
Consensus pattern (63 bp):
AGAGATATAGAGATATAGATAGAGAGAGATAGAGATATAGAGAGATAGAGATATATATCTGAG
Left flanking sequence: Indices 124901 -- 125400
CGGCTCCCTCCCTCTATAGAAAACTATAGGCCCTCGGGGGCGCCTCTATCTATCTAGATAGCCGC
CGTTCACATATCAGTATGATATGATTGGCATCGGGACGGTAGAAGATTAGGGCCCTAGATCCTAG
ATATATGGCAACCCAACCCACAACTCTCCTCTATCCCCTAGTGCTATTGCCAGATAGAGTAGGCC
GAACTATAACTCAACTCGATCCCCCCGTCTTACTCGACCTGCCTATCGCCTATCTATATAGGGGA
GGGGCGCATAAATGCTTGACCTCGACCTGTTGCCTAGATATTCTATAGAGGGCGCCGACAGCATT
TCTTTATGATTATGATCCATGCTCGAGGCCGAGGAAAACGAGAGCCCCCTATCTGAACGGTATAT
AGATTCTATTCCATATAGAGGGGAGGGTGCCGACGGAACGTTATGCTCTGATCGAGGCCGAGCGG
CTATAGAGAGAGTAGGCACTCCTCTATATAGATAGATAGATAGAT
Right flanking sequence: Indices 125568 -- 126067
TAGATAGATAGATAGATAGATAGATAGATATAGGCAGAGAGTTTCGATCGAGATATAGATATCTA
TATCTTATCTGATATTGATATTTGGGGAGGGCGAGGACCCAGATATAGAAGGCCCTACCCTATCT
ATCTGCTCGATTGAAGCGGGCCCTGCTCGATTGAAGCATCTCCCGGGGTCGATTGAAACGGGGCC
ATCTCTATATAGATCTAGGTAGGACCGATAGGCCCGAGTAGAGAAGGGTTAGACTCGGCACTCCC
CCCCAGATCTATATAGAGATGGCCCCTCTCTCCCCTATATATAGATATGGGCCCCTCGGCCCCAC
TCTCTATATATGATATGATAACTCTAGATGGCGGGCGAGAAGGAGGAGCGCCCGGCGGAGGCCCC
CTATCTTGATTTGGGTTGGGACCCGATAGACTGCCATAAGGATAGAGTTCTATAGGGGCAGCTCA
GTCCCATATCTATATAGAGGCGCTCCGATCCGGGAGCCGGGGCGG
Found at i:127977 original size:12 final size:12
Alignment explanation
Indices: 127952--128005 Score: 92
Period size: 12 Copynumber: 4.6 Consensus size: 12
127942 ATCTATAGAC
*
127952 TCTA-CTGCCTA
1 TCTATCTGCCCA
127963 TCTATCTGCCCA
1 TCTATCTGCCCA
127975 TCTATCTGCCCA
1 TCTATCTGCCCA
127987 TCTATCTGCCCA
1 TCTATCTGCCCA
127999 TCTATCT
1 TCTATCT
128006 TCTCTCTGCC
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
11 4 0.10
12 37 0.90
ACGTcount: A:0.17, C:0.39, G:0.07, T:0.37
Consensus pattern (12 bp):
TCTATCTGCCCA
Left flanking sequence: Indices 127452 -- 127951
GAGAGACGAGGGATCGACCAACGGCCCTATATAGATAGTCGACCAACGACCCGGGCACTCGACCA
TCGGCCCCGTCGACTGAAGATGGACGAACGAATAATAACCGTCGACATAGATCCGAACGAGATAG
TAGAGTAGGCCGTCGGGAGAGAGCTATATAGAGTCTGCCCCCCCCATAGCCATAGATAGTTCAGG
GCTCCTCACCTCGAGACAGTCTCTCATATCTAGTTGGGAGTTGGGAGTGAGATAGACAGTCTCAG
TACGATCTCGAGTTATAGAACTCTCGGGGGCACCTCGCGATGCTGAAACGCCACGCCTATCGCCC
TATCTGACCAGATAGAATCTCCTCTCCTATAGGGCAGATATAGATATAGGGCCCACTCCCACTAG
TTAGAGTTCGTTGCCAGATGCCAGATGTATTCTCTATTCTATATGCCCTATCTAAACAGAAGGTT
CTCTAGCCCCCAACCCATCTATACTGCATCTGCCCATCTATAGAC
Right flanking sequence: Indices 128006 -- 128505
TCTCTCTGCCCATCCCCATCTAGTTCAGATCTGATCTGCGCGGGCGGGCGCCTATATCGGTTATC
GTTTATCGATATAGAATAGGCGACCCAGATGGATGGGGTCGGCCGAGCCAGTGATGCCATTCCAT
ACTTGTGATGAGCCGGTAATGAGCTTCCATACTGAGCCAGTGATGCATTCCATACCAGTCCATTC
TAGTGATTGTGATTGTGATTGACATTGACGCGGTCCATTCCGTACCAGTTGGTGATGCAGCCATG
GGTCGTCAGTGGACAAGCGACTCTCATCCCATCTCATCTCATCACCGATCGTATTACGTATAGAA
TAGAGAATCTGGCATGGACTGCATCGCTGTCTATAGCAATCAAGACGACAAGCGACTCTCATCTC
ATCACCAATCAGAACTATAGGGGCGCTAGGTAAACACTAGGGATTACCCTGCGTCGCTACACTCC
ATATCATATTCCATATTCTCTATATGATATGATCCATCGCGTTAT
Found at i:128815 original size:17 final size:17
Alignment explanation
Indices: 128789--128831 Score: 68
Period size: 17 Copynumber: 2.5 Consensus size: 17
128779 AGGGGATCCC
*
128789 ATATATAGATAGGGAAG
1 ATATAGAGATAGGGAAG
*
128806 ATATAGAGATAGGGAAT
1 ATATAGAGATAGGGAAG
128823 ATATAGAGA
1 ATATAGAGA
128832 GGAGAGGGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
17 24 1.00
ACGTcount: A:0.49, C:0.00, G:0.28, T:0.23
Consensus pattern (17 bp):
ATATAGAGATAGGGAAG
Left flanking sequence: Indices 128289 -- 128788
TCATCCCATCTCATCTCATCACCGATCGTATTACGTATAGAATAGAGAATCTGGCATGGACTGCA
TCGCTGTCTATAGCAATCAAGACGACAAGCGACTCTCATCTCATCACCAATCAGAACTATAGGGG
CGCTAGGTAAACACTAGGGATTACCCTGCGTCGCTACACTCCATATCATATTCCATATTCTCTAT
ATGATATGATCCATCGCGTTATACGATCCGGGAGAGCGGAGGGGAAATAGCTCAGTCGGTTAGAG
TGCTGGTCTGTCACGCCAGAAGTCGCGGGTTCGAACCCCGTTTTCCCCGATCCCGATCGTGCCAA
GTGGATGGCCCCCCTCTCTCTCTATCTGGGAACAGTTGGGACAAGATTCAGACGCCGATCTAGCG
AGGCGTTGGCCGATCTAGCGAGGCCCGAGGGCGGCCATCATCATCATCCGCACTGAGATGAGATA
TGGGCTCGCCATAGGGGATCCGCTTCGCTGTATATAGGGGATCCC
Right flanking sequence: Indices 128832 -- 129331
GGAGAGGGCCATATCATATATAGATAGGGCCGATAGGGCGCTGGTTTCCGCCATTCTCAGCCCCC
CTATCCAATCATGGCCAGGACGATATATAGGGAAGATATATCTATATATAGGGCGGGGGGATCGG
GTATTATAGATAGATCGAGGGAGACTCTCTATACTATACTCTGATTATTTGGAACCGCCGGCATG
CCATGCTGATCCGCGAGTAGTCCCGTTGTCGCGAGCCATGAGTCTAGAGAGTCTGGAGTAGAGAG
TTAGTTCTTTAGCTGGGCCCTATCTCCTCCGGCCCCGCCCCCCCCCTCTTATAGATCTCTCTCTA
TCTGGAGGGGGAGGGCCCCTACCCCTATATAGTTAGATGGGGCCCAGAGATCTAGAGCCATATCT
ATAGAGAGAGGGGGGATCTCACCCGCCATCTCTATTCTATCTGGGTGAGGGGGGGGCCCTATATA
GAGATATGGGGAGGCCCTATATAGAGATCTGGGAGTGAGCAACCA
Found at i:129302 original size:23 final size:23
Alignment explanation
Indices: 129271--129319 Score: 80
Period size: 23 Copynumber: 2.1 Consensus size: 23
129261 TCTGGGTGAG
*
129271 GGGGGGGCCCTATATAGAGATAT
1 GGGGAGGCCCTATATAGAGATAT
*
129294 GGGGAGGCCCTATATAGAGATCT
1 GGGGAGGCCCTATATAGAGATAT
129317 GGG
1 GGG
129320 AGTGAGCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.24, C:0.14, G:0.41, T:0.20
Consensus pattern (23 bp):
GGGGAGGCCCTATATAGAGATAT
Left flanking sequence: Indices 128771 -- 129270
CTGTATATAGGGGATCCCATATATAGATAGGGAAGATATAGAGATAGGGAATATATAGAGAGGAG
AGGGCCATATCATATATAGATAGGGCCGATAGGGCGCTGGTTTCCGCCATTCTCAGCCCCCCTAT
CCAATCATGGCCAGGACGATATATAGGGAAGATATATCTATATATAGGGCGGGGGGATCGGGTAT
TATAGATAGATCGAGGGAGACTCTCTATACTATACTCTGATTATTTGGAACCGCCGGCATGCCAT
GCTGATCCGCGAGTAGTCCCGTTGTCGCGAGCCATGAGTCTAGAGAGTCTGGAGTAGAGAGTTAG
TTCTTTAGCTGGGCCCTATCTCCTCCGGCCCCGCCCCCCCCCTCTTATAGATCTCTCTCTATCTG
GAGGGGGAGGGCCCCTACCCCTATATAGTTAGATGGGGCCCAGAGATCTAGAGCCATATCTATAG
AGAGAGGGGGGATCTCACCCGCCATCTCTATTCTATCTGGGTGAG
Right flanking sequence: Indices 129320 -- 129819
AGTGAGCAACCACTCGAGTGAGTGATGCGCCCTAGATATAGGGATGCGCCGCAGTTGCCAGATAG
ATAGGGCATATGGGCATATAGAATACAAATACAGATACAGATATCACTCTATTCATATCTATATG
GAGTGCCGGGTAGGCCCCCTATCTATATAATACGGGCCTATATATCTCTCTATAGGTATCTGTCA
CATGATCATGATGCGCCATATCTTATCTATATATAGGGGTAGTCACCGATGTGCCAATATCTATA
TCGGGGCTACCCCTATATTCTATAGGCCCACCCAATCCAATCTATAGTGGGAGGGACGAAATATG
GTGTGGTGCGCAGGGCGGGGAGCCGGATTCGCTACTATATTATTCCGGGGATTCGCTACGGGATG
CCCATTTATCGAATTGATATTTCTCGCCATTCCAATTGATATGATATTTCTCGTCCCCGGGGCCG
CCGCCCGACTATGTCCGAAATCTATTTACGTAGGGGCATAGGGGA
Found at i:132354 original size:46 final size:46
Alignment explanation
Indices: 132287--132382 Score: 192
Period size: 46 Copynumber: 2.1 Consensus size: 46
132277 GGCGGCCCCC
132287 CCCCTCTCTATTCTATCTTATCTCGCCATATAGATAGTTCAGGGCT
1 CCCCTCTCTATTCTATCTTATCTCGCCATATAGATAGTTCAGGGCT
132333 CCCCTCTCTATTCTATCTTATCTCGCCATATAGATAGTTCAGGGCT
1 CCCCTCTCTATTCTATCTTATCTCGCCATATAGATAGTTCAGGGCT
132379 CCCC
1 CCCC
132383 CCGGGCTCGG
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 50 1.00
ACGTcount: A:0.19, C:0.33, G:0.12, T:0.35
Consensus pattern (46 bp):
CCCCTCTCTATTCTATCTTATCTCGCCATATAGATAGTTCAGGGCT
Left flanking sequence: Indices 131787 -- 132286
CTTCCGGTGAATGGACCGGCTTACTGGATTCAATCCAGCATAGTTCCACCACACCATTGTAACGG
AACGGCGCCATATCGTTCCTTGCCGTAGTAACCAACCGAGGGCACCATAGTTACTATGGTCCTTG
TAACTATAGAATATCTAGGGGAAGCGGGCACCGGGCTATATTCTTGTTCTACCACCAATCGACCA
CCTCAATATCCCTCCGAAAACCTTTTACTTCGTCATCTCTGCTGAAAACAAGTTCTATCCGCGCT
TCATAACGAAGGAGCAGCCTACTCCCCCCTCTCTATAGAAATGGGATATATTCTATCGCCCCCAT
CCCCCCACAGTATATAGTTCCATATAGATAGATAGGGGCACTGTATAGAGTCCCCCCTCCCCTAG
AAACCGATAGATAGGGGGCACAGAGTCCATATAGATAGCACAGTATATAGTTTAATTGGCTATCT
GGCGGCGGCCTATATATAGATCTATATCTGGGCTCGGCGGCCCCC
Right flanking sequence: Indices 132383 -- 132882
CCGGGCTCGGTATTCTCCCCCCGGGCTCGGTATTCTCTATCTTATCTATATCTGGGGGGTTCTAC
TCGGTTCCACTAGCCGACTAGAGGAGGTTGGCTAGTTCGACTACTCATCCAACCTATCCCATAGA
GTTCAGGGTATAGGGGACTGTAGTTCTTGCCCCTCCCCCTCTATATGGAGAATTCTAGAGAAGCG
GAAAACAATCGATAGGGCGCCGAGTCTATATATATAGATAGGGGAGGGGACGGGAGGATCTAATC
GGAGAATCGATCCATTCGATTTGTGTTTGTGCAGCACTCGGATAAGATAACGGAGAATCCAATCC
CCAATCCATTCTCCCTATCCTTACAGTTACTCGGCTCGGATAACGGAGAAGGGTCGGAGAATCCC
TATATATAGATATGGCATCCTGTCCTGGAGATAGGGAGATAGGCCGCTCTCACCCCTATCTAGAT
ATGGCAAGCTAAACACCCGCTTCTATCACTACACTATATAGCTCC
Found at i:132402 original size:20 final size:20
Alignment explanation
Indices: 132377--132419 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
132367 TAGTTCAGGG
132377 CTCCCCCCGGGCTCGGTATT
1 CTCCCCCCGGGCTCGGTATT
132397 CTCCCCCCGGGCTCGGTATT
1 CTCCCCCCGGGCTCGGTATT
132417 CTC
1 CTC
132420 TATCTTATCT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.05, C:0.47, G:0.23, T:0.26
Consensus pattern (20 bp):
CTCCCCCCGGGCTCGGTATT
Left flanking sequence: Indices 131877 -- 132376
TAGTAACCAACCGAGGGCACCATAGTTACTATGGTCCTTGTAACTATAGAATATCTAGGGGAAGC
GGGCACCGGGCTATATTCTTGTTCTACCACCAATCGACCACCTCAATATCCCTCCGAAAACCTTT
TACTTCGTCATCTCTGCTGAAAACAAGTTCTATCCGCGCTTCATAACGAAGGAGCAGCCTACTCC
CCCCTCTCTATAGAAATGGGATATATTCTATCGCCCCCATCCCCCCACAGTATATAGTTCCATAT
AGATAGATAGGGGCACTGTATAGAGTCCCCCCTCCCCTAGAAACCGATAGATAGGGGGCACAGAG
TCCATATAGATAGCACAGTATATAGTTTAATTGGCTATCTGGCGGCGGCCTATATATAGATCTAT
ATCTGGGCTCGGCGGCCCCCCCCCTCTCTATTCTATCTTATCTCGCCATATAGATAGTTCAGGGC
TCCCCTCTCTATTCTATCTTATCTCGCCATATAGATAGTTCAGGG
Right flanking sequence: Indices 132420 -- 132919
TATCTTATCTATATCTGGGGGGTTCTACTCGGTTCCACTAGCCGACTAGAGGAGGTTGGCTAGTT
CGACTACTCATCCAACCTATCCCATAGAGTTCAGGGTATAGGGGACTGTAGTTCTTGCCCCTCCC
CCTCTATATGGAGAATTCTAGAGAAGCGGAAAACAATCGATAGGGCGCCGAGTCTATATATATAG
ATAGGGGAGGGGACGGGAGGATCTAATCGGAGAATCGATCCATTCGATTTGTGTTTGTGCAGCAC
TCGGATAAGATAACGGAGAATCCAATCCCCAATCCATTCTCCCTATCCTTACAGTTACTCGGCTC
GGATAACGGAGAAGGGTCGGAGAATCCCTATATATAGATATGGCATCCTGTCCTGGAGATAGGGA
GATAGGCCGCTCTCACCCCTATCTAGATATGGCAAGCTAAACACCCGCTTCTATCACTACACTAT
ATAGCTCCCCTCCCTATAGATCTATATGCCTGTTCCCGGGGCCCT
Found at i:133470 original size:18 final size:18
Alignment explanation
Indices: 133447--133482 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
133437 AGTATGGGGT
* *
133447 GCCATATATATATAAGGG
1 GCCATAGATATAGAAGGG
133465 GCCATAGATATAGAAGGG
1 GCCATAGATATAGAAGGG
133483 CGAGGTGAGC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.39, C:0.11, G:0.28, T:0.22
Consensus pattern (18 bp):
GCCATAGATATAGAAGGG
Left flanking sequence: Indices 132947 -- 133446
CGGCCCTATATATCTTCTATATCTCTCTCAGATATATATCTCTCTCTCTCTATATCTCTCTCTTC
AAGCGGATCATGCGAGATGTGGGTGAGCCCTATATCTATAACTGAGGGGGCCGATTCTATATGTG
ATATGAGCGGGGCCTATCTAGACTCGGGGCGATCCCGAGGTCATTTACTTGCTCGACCGACCCAC
TCAGATCACGTTTCTAGTTTAGAGCCCTATCCCTGCCCCATAGATGTAGATGGGCCCGAACTGGG
GAGATGGGCCCGCCCCCCTCCCCCTCTCTATATATGGGATATGGGTGGGATGGGAATATATATCT
TACTTGCATATAGATCTACGTCTATATATGCAACCGTCACTATCTGTATCTGGGGTACTACAGGT
GATGACTGGGCCCCCCTCCTAGTTCAGATTAGATTAGAGATATAGAGAGAGAGATCTCTCGTAGA
TCTCTAGTTGACCGCCCCGCCATATAGAGTATGGGAGTATGGGGT
Right flanking sequence: Indices 133483 -- 133982
CGAGGTGAGCGAGCCCCTATTCTATATAGATATCTGACCGGGTGCACCCACCTATTCTAGATGGG
CTCAGTACCTCCCAGGGACCGGTACTATCCTATCGCTGGATATAGCCATATCTAGGCCCCGAATG
CATAGGTCGGTCGGTCAACCCGGGCTCCTCTCCCCCATATAGAGAAAGGCTTCGACTTCTATATC
TATATACGGGGTCTATAGAGAGTAGAGGGCCCCTGGCGGCCTACTACCTACTCTATATAGCTGGG
AAGGTTGGTGATGCACGTGATGAATCGGTTGAGATGATATCCCTGTCTCCCATATCTCTCCTCTC
CGGACGGCCATACCTATATATACTCTCTGGACTCCGGCATATAGATTCTATTGGGGGGCGATCTC
CCCTCCCCCCTATCAGCCGCCTCTCAGATATAGATAAGATATAGAGAGGGGGGGGGCCAGTCGCA
TATAGATCTATATCTAGAGGGGCCGGCCAAGCCATATATATATAT
Found at i:134013 original size:2 final size:2
Alignment explanation
Indices: 133971--133999 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
133961 CGGCCAAGCC
133971 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
134000 GAGGGGCCAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 133471 -- 133970
GATATAGAAGGGCGAGGTGAGCGAGCCCCTATTCTATATAGATATCTGACCGGGTGCACCCACCT
ATTCTAGATGGGCTCAGTACCTCCCAGGGACCGGTACTATCCTATCGCTGGATATAGCCATATCT
AGGCCCCGAATGCATAGGTCGGTCGGTCAACCCGGGCTCCTCTCCCCCATATAGAGAAAGGCTTC
GACTTCTATATCTATATACGGGGTCTATAGAGAGTAGAGGGCCCCTGGCGGCCTACTACCTACTC
TATATAGCTGGGAAGGTTGGTGATGCACGTGATGAATCGGTTGAGATGATATCCCTGTCTCCCAT
ATCTCTCCTCTCCGGACGGCCATACCTATATATACTCTCTGGACTCCGGCATATAGATTCTATTG
GGGGGCGATCTCCCCTCCCCCCTATCAGCCGCCTCTCAGATATAGATAAGATATAGAGAGGGGGG
GGGCCAGTCGCATATAGATCTATATCTAGAGGGGCCGGCCAAGCC
Right flanking sequence: Indices 134000 -- 134499
GAGGGGCCATATATCTATAGGGCTGGTTCGCTCCGCTGCACCCATCTCTCCGGGGGCCTTCAGGC
AGCCAGCCTCGAAACAGATACCGATGTCGGCGAGGGTTAATGAATAGGGCCAAGTTATTTGATTG
ACTCGCCCCGCAACATACGAACGACATACGTAACATAGACTGCTGAAGCCCCATCTATATCTAGT
CGAAACGGATTATTCGACTCTCACGATTGAAGCGTCGCCCTATCTATATATATCTCGCTGAATCA
ATTCATAAATAGGCCAGCTAGACTCACGATTCAGTCGAGACATAGATAGATAGGGCTGGTGAAGC
TAGTGTAGTCCATTCCATCTATATGGCATGGGCCGGGATCTCATCGGCTCGGGAACTACAATAGA
TCGAGGGCGCCATATCTAGAATCTAGTTCAGGGGGGGGGGTAGAGTCGGTAGCCCTATATCCTGA
ACTATCCTTGTCCTCCCGTTCCAATCGGTAGGTGGGAGTGCCCAG
Found at i:135473 original size:22 final size:22
Alignment explanation
Indices: 135431--135496 Score: 107
Period size: 22 Copynumber: 3.0 Consensus size: 22
135421 TGATCGCTCT
*
135431 TGATTGTGCCG-AACGGTGAAG
1 TGATTGTGCCGCTACGGTGAAG
*
135452 TGATTGTGCCGCTACGGCGAAG
1 TGATTGTGCCGCTACGGTGAAG
135474 TGATTGTGCCGCTACGGTGAAG
1 TGATTGTGCCGCTACGGTGAAG
135496 T
1 T
135497 AAGTGATTGC
Statistics
Matches: 41, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
21 11 0.27
22 30 0.73
ACGTcount: A:0.20, C:0.18, G:0.36, T:0.26
Consensus pattern (22 bp):
TGATTGTGCCGCTACGGTGAAG
Left flanking sequence: Indices 134931 -- 135430
CGACTCATCGACCGGATCCGAGGAATGCCAAACCGGAATCAATCCAGCCAGATACCGGGAGGGAC
TATCACGAGTTACATACTCATCAGTCTCAATTCAATGGTGTGCCGGTTTGAGCGAGGGTCTTTAT
GTCTAATGATAATAGATAGATGGCCGTGGGTTCAATTCGTCACGTACAGAACGGTAGATGTAAAT
CGATTCTAAATGAATAGATGGCCGATGGTCGTGGGTTCAACGTGGAGAGCCGTTGGCCCTATCTA
TATATATCCGAGGGCCAGGGCCATTAGATTAGGAGAGCCGGGGCCAGGGCCTTTACTCCTTTACT
AGGTTTGGTTCATCGAACTAGGTTGGTTGGTTGATCGAGGGCCCTGTGGAGATTCTATACAGTTA
CAGTCGGCACCCCCACCCTCTCTATATATCATATCTATATGGCGACGGCCTACTCTATAGAATAT
AGATATATATAGCTGGGAGAGGCCCCCTATCTGGTTGATCGCTCT
Right flanking sequence: Indices 135497 -- 135996
AAGTGATTGCCAGAGAATATAATATATAGGGCGGAGCCCCATCCGTTTATTGTATTAATTGAACC
ATCGATGAAGAAGTTATCTCCTCCAACAATCTGGGGGGGGGTTGATGAGTGGGCGGAAATGGGTT
GGTCTAATCGGGCCACCCCCCCCCCATATAGAGAGGGCCCCCACCCCATAATCGATAGTCGTCCG
CATATTATCTCCGAACAGATCTTAGATCGAGATATCTAGACATCATTTCTTGCATCTTTAGATCG
CACGCATGTTACGTATATAATCAATCATAGAATACCTCTATATACGACTAGTCATATATATACAA
TACGACTAGTCGATCCGGTGGTGCCACTCATGCTACGTATAGAATCCATATCCATCCATTGCAGG
CCTATATCTCTAGGGGCCCCCTCTCTCCCCCCCCCCCCTTCTCTCTATATGGGGGAGAGAGGGGG
GGGGGAGAGGGACAGGGGCGCCCCCGCCCCCTTTCCTTCATGAGA
Found at i:137003 original size:5 final size:5
Alignment explanation
Indices: 136993--137071 Score: 158
Period size: 5 Copynumber: 15.8 Consensus size: 5
136983 CTAGATTCTG
136993 CCAGC CCAGC CCAGC CCAGC CCAGC CCAGC CCAGC CCAGC CCAGC CCAGC
1 CCAGC CCAGC CCAGC CCAGC CCAGC CCAGC CCAGC CCAGC CCAGC CCAGC
137043 CCAGC CCAGC CCAGC CCAGC CCAGC CCAG
1 CCAGC CCAGC CCAGC CCAGC CCAGC CCAG
137072 TACGTCAGTA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 74 1.00
ACGTcount: A:0.20, C:0.59, G:0.20, T:0.00
Consensus pattern (5 bp):
CCAGC
Left flanking sequence: Indices 136493 -- 136992
TGCTTTAGATCGGGAGTAACCAATGATTGATGGGCAATGAATGATGAGGCAACGGGGGGGGAAGG
ACGGGAAGAGCGATGCCTACATTCAATCAATTGATTCGTCATGGTAGGGAGGAGAAACGGCGCAC
AGACCGTACCCGAGCTTTGGATCAATGTCCTCAGAAGCGAGGAGTACGCCCGCGCGTTTCGACGA
GAACACCAAAAAAACCTAATTCAGCTCCACGTAAGATAGCCAAAGTACGGTTGAGCAATCGGCAC
GATATCTTTGCAATCATTCCGGGCGAAGGTCATAATCCACAGGAACATTCTATGGTGTTGATCAG
GGGAGGTAGAGTGAAAGATCCGCCGGGTGTGAAATCCCACCGTATTCGGGGAGTCAAGGATTCGC
TGGGAATTCCGGGTCGGAGAAGGGGCAGATCGAAATATGGCGCGAAAAAGCCCAAATCGAATGAG
AGACAGAGCTAGATCCTTTCCTCTATTCCAACATTCTAGATTCTG
Right flanking sequence: Indices 137072 -- 137571
TACGTCAGTACTTTAGTACAGTACTTTCTCAATAGCTTAGCTTAGCTGGGAATTGAGCGAACCTA
TTCACGATTCCAGCCGGGGGGACCCAGATACTATATAGGGCGGAGGACGTTGCCTGCATTGAGAT
CTAAAACTCGTCGTCTACTTCCGGGAAATGTTTGGAACAAGAGACTGACGAGGATACAACGCCGC
ATCCTCCGAAGATTGAAGAGCAAGAGAAGATCTATTGGGAAGAATCCGTCTCTGGGACAGAATTT
GAACAGTTATCTCAAATCACAAGCCATACGAAAGTTGTCCCCCTTTCATGGAAATCTACCTATCG
CAAAGATGCACGGAGGGACAGAACGAGCTTCATATATACCTTTCTCACTCAATCCAGAAACGAGA
TCGGACGTCATCCTGGTTCGTCTCCATTTCCGCGAAACCCTTCCTCAAGCGAGGCAGCTTATAAG
TCACCGAAAGATCCGTGTGAATAATGAAATGGTCAACATGACTCG
Found at i:138029 original size:15 final size:15
Alignment explanation
Indices: 138006--138081 Score: 125
Period size: 15 Copynumber: 5.1 Consensus size: 15
137996 TATTGGTTTG
138006 AATCCCCCTCCAGGA
1 AATCCCCCTCCAGGA
*
138021 AATCTCCCTCCAGGA
1 AATCCCCCTCCAGGA
*
138036 AACCCCCCTCCAGGA
1 AATCCCCCTCCAGGA
*
138051 AATCCCCCTCCGGGA
1 AATCCCCCTCCAGGA
138066 AATCCCCCTCCAGGA
1 AATCCCCCTCCAGGA
138081 A
1 A
138082 GAGGAGAATC
Statistics
Matches: 55, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 55 1.00
ACGTcount: A:0.26, C:0.46, G:0.14, T:0.13
Consensus pattern (15 bp):
AATCCCCCTCCAGGA
Left flanking sequence: Indices 137506 -- 138005
TCAAGCGAGGCAGCTTATAAGTCACCGAAAGATCCGTGTGAATAATGAAATGGTCAACATGACTC
GTTTTCAAGTGTCCCGTGGTGATCCAATCCCTATTGGAGAGAATTCCGTCAGAACGAGAAAAGTG
AGGAAATATTCCTATATCGGAGGATTTGTCGATCAAATCGTGGGCAAATGTCGTATTGTGGATAA
ACCCCGAACGAGAAAAGGATGGTTCCGCCTACTGGAGAAGAGACAGGGGTGCCGCCTCTTACTCA
AATCCTTGTTTTTGCAACGGTTGCGCTCGTGGCGAAAACAAAATTCCATGCTTTCCTCAAGAACT
CCTGTATTAAAAGGAGTATGCTTGGGCAGCTTGTTCGCCGAGCACGACAAAATGAAGAGAAATTC
GTATTATTCCGTATTATTGAAGAGAAGGGGCCCCACTTGTCTGTCAAGTCTCATTGTCAATAACG
GACCCTCTCTATATGCGCTGTGTCGCGATTCAACCTATTGGTTTG
Right flanking sequence: Indices 138082 -- 138581
GAGGAGAATCGGAAGGAATAGAAGAATCAGAAAAATAGAACTACCTACTCATTACTTGGAGGTCA
ATCATAGAACACCGAAAGCTGTGGTATCTTACGGACCTGACATAGGTCACATCCCTCCCGACATG
AGATTGAAGGATCCGAACCTTCCCTGAACGAAACAGGAGCAGGGGCCCCCACCCCCCCCTATCTA
TTATATCTCGGCTCCCCCATATAGATTAGATCTGGGAGCCGAGCCGATAAATAGAGTTTAGTTGA
GAGTAGAGAGGGGGGGGGGGATAGGGGAGTCTAGATAGGGGGCGGTAGGGAGATATAGCCCCGCC
CCTAGATCTATGTTCTGTACCGAACGGAGTGCAGTGTTTCCTTAGCGACAGCGAACAACTCTATA
AGACGACTTCTTAAGTCGTCTTGAGACCTCAAGAGACCTCTTTACTTCAACGAAGTTCTAGTCAT
AGAACCAACAGCTAATGATAATCGATTGGCCGATTGGCACTTATC
Found at i:139082 original size:21 final size:21
Alignment explanation
Indices: 139058--139098 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
139048 CCCATAATAG
139058 ATATCGCCCTATATCTATATT
1 ATATCGCCCTATATCTATATT
139079 ATATCGCCCTATATCTATAT
1 ATATCGCCCTATATCTATAT
139099 CGACCCCGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.29, C:0.24, G:0.05, T:0.41
Consensus pattern (21 bp):
ATATCGCCCTATATCTATATT
Left flanking sequence: Indices 138558 -- 139057
TCGATTGGCCGATTGGCACTTATCCGGATCCGGATGGGGATCTATCTCCCCATCCATATATGATG
AGGTTGATTGGTAGGAAGGAGTTAGAAGTTATAGTTCTATATTCCAGAGTTTGAGAAGAATGAAC
AGATGTACCCATATAGAGATAGGGCTCCTATATTGTATTTCGCCGGGGGCGATTTCTGTATGAAA
CGCGTTGTCTCTATCTCCTCACCGATAAGCAAGTGCGAGAGGTCGGGGTGAGCCATCATGATGTA
TTGGATACAGATATCTAAATACGACCGGCAGCAGATATAGAGTTCAGATATAGATGTCCCGAAAT
GACGATGATGTCGCCCTTCCCTTTATTAACTCGTTCCCCTGGCGCGTATCCACCAATCTCCGCGA
CCGATGCCAGGGCACTTTGATCACGGAGCAACGCAGGTCCGATCTGGAATGTTCGGAGATCTATA
TCTACCCCGTTCGGATATTCACCAATCGGCGCGACCCCATAATAG
Right flanking sequence: Indices 139099 -- 139598
CGACCCCGCCCCGGGCCCGACAGATTGGGTAGAATCGTAAGTGCACAGATGCCCCACTGATTATC
GAACGGGCAAATACCAAATACCAGTTGCCTCAGCCTCAGCCTCAATTAGTGGGGTGGGGTGGGGT
GGGGTGGGGTGGGGGAAATAAAGAAATAAAGAAATTTCTCTAGTGGGGAGGAGCTCGCGCCTGTG
TGGGATTTCCAATGAATGCCAGAACTATGACTCTATATGGGGTGGGGGCGGGAAGAAGCATGGGA
GGGAGTGGGAATAGAGATACATACGGCCCGGTCCACACTTCGATTCCTCCACACTCCGATTCCTA
ATTCCCCGTCTCTCGGAGTCGTTATCGAGGATCTCGGGAAAGCTATATAGAGTAGGCCATTGGGA
TTGGACCGGGACCAGGAAGGGACGGACGTGAACACGGCTCGCCGGCGAGCCTGCCCCGTCTCGAT
CGGCCCCAGACTCTATATATATATAGGGGCGAATACTCCACAAGT
Found at i:139222 original size:5 final size:5
Alignment explanation
Indices: 139212--139242 Score: 62
Period size: 5 Copynumber: 6.2 Consensus size: 5
139202 GCCTCAATTA
139212 GTGGG GTGGG GTGGG GTGGG GTGGG GTGGG G
1 GTGGG GTGGG GTGGG GTGGG GTGGG GTGGG G
139243 GAAATAAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 26 1.00
ACGTcount: A:0.00, C:0.00, G:0.81, T:0.19
Consensus pattern (5 bp):
GTGGG
Left flanking sequence: Indices 138712 -- 139211
CTCCTATATTGTATTTCGCCGGGGGCGATTTCTGTATGAAACGCGTTGTCTCTATCTCCTCACCG
ATAAGCAAGTGCGAGAGGTCGGGGTGAGCCATCATGATGTATTGGATACAGATATCTAAATACGA
CCGGCAGCAGATATAGAGTTCAGATATAGATGTCCCGAAATGACGATGATGTCGCCCTTCCCTTT
ATTAACTCGTTCCCCTGGCGCGTATCCACCAATCTCCGCGACCGATGCCAGGGCACTTTGATCAC
GGAGCAACGCAGGTCCGATCTGGAATGTTCGGAGATCTATATCTACCCCGTTCGGATATTCACCA
ATCGGCGCGACCCCATAATAGATATCGCCCTATATCTATATTATATCGCCCTATATCTATATCGA
CCCCGCCCCGGGCCCGACAGATTGGGTAGAATCGTAAGTGCACAGATGCCCCACTGATTATCGAA
CGGGCAAATACCAAATACCAGTTGCCTCAGCCTCAGCCTCAATTA
Right flanking sequence: Indices 139243 -- 139742
GAAATAAAGAAATAAAGAAATTTCTCTAGTGGGGAGGAGCTCGCGCCTGTGTGGGATTTCCAATG
AATGCCAGAACTATGACTCTATATGGGGTGGGGGCGGGAAGAAGCATGGGAGGGAGTGGGAATAG
AGATACATACGGCCCGGTCCACACTTCGATTCCTCCACACTCCGATTCCTAATTCCCCGTCTCTC
GGAGTCGTTATCGAGGATCTCGGGAAAGCTATATAGAGTAGGCCATTGGGATTGGACCGGGACCA
GGAAGGGACGGACGTGAACACGGCTCGCCGGCGAGCCTGCCCCGTCTCGATCGGCCCCAGACTCT
ATATATATATAGGGGCGAATACTCCACAAGTATCCGTGGAGAGCGATCAGATCGGCCCCAGCTAT
GTATATCACAGATCCTTCATGCTGATGCTGCTTATAGCTTGCTCCCTCCCGTCCGTGCCATCTCT
CTATCTATAAGTGTCCCAATCCCCCTTCACTCTACAAGCTCCCTT
Found at i:139411 original size:16 final size:16
Alignment explanation
Indices: 139390--139422 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
139380 TACGGCCCGG
*
139390 TCCACACTTCGATTCC
1 TCCACACTCCGATTCC
139406 TCCACACTCCGATTCC
1 TCCACACTCCGATTCC
139422 T
1 T
139423 AATTCCCCGT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.18, C:0.45, G:0.06, T:0.30
Consensus pattern (16 bp):
TCCACACTCCGATTCC
Left flanking sequence: Indices 138890 -- 139389
ATGTCGCCCTTCCCTTTATTAACTCGTTCCCCTGGCGCGTATCCACCAATCTCCGCGACCGATGC
CAGGGCACTTTGATCACGGAGCAACGCAGGTCCGATCTGGAATGTTCGGAGATCTATATCTACCC
CGTTCGGATATTCACCAATCGGCGCGACCCCATAATAGATATCGCCCTATATCTATATTATATCG
CCCTATATCTATATCGACCCCGCCCCGGGCCCGACAGATTGGGTAGAATCGTAAGTGCACAGATG
CCCCACTGATTATCGAACGGGCAAATACCAAATACCAGTTGCCTCAGCCTCAGCCTCAATTAGTG
GGGTGGGGTGGGGTGGGGTGGGGTGGGGGAAATAAAGAAATAAAGAAATTTCTCTAGTGGGGAGG
AGCTCGCGCCTGTGTGGGATTTCCAATGAATGCCAGAACTATGACTCTATATGGGGTGGGGGCGG
GAAGAAGCATGGGAGGGAGTGGGAATAGAGATACATACGGCCCGG
Right flanking sequence: Indices 139423 -- 139922
AATTCCCCGTCTCTCGGAGTCGTTATCGAGGATCTCGGGAAAGCTATATAGAGTAGGCCATTGGG
ATTGGACCGGGACCAGGAAGGGACGGACGTGAACACGGCTCGCCGGCGAGCCTGCCCCGTCTCGA
TCGGCCCCAGACTCTATATATATATAGGGGCGAATACTCCACAAGTATCCGTGGAGAGCGATCAG
ATCGGCCCCAGCTATGTATATCACAGATCCTTCATGCTGATGCTGCTTATAGCTTGCTCCCTCCC
GTCCGTGCCATCTCTCTATCTATAAGTGTCCCAATCCCCCTTCACTCTACAAGCTCCCTTCACTC
TTCCTTCTCGGACCGGGAAGGGCTATGTTGCCCATTACCATATAGATAGATAGGGGGGAGCCATC
TATCTATCTATCTATCTATAGGGGGGCCTCATCAAACGGCACCAGAGATCTATATATAGAGCGCT
CAACCAGTTACCCCTACTCTAGAGAGTATAGTTGCTCATCAAACA
Found at i:140566 original size:18 final size:18
Alignment explanation
Indices: 140543--140578 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
140533 TCTCTTGCCC
140543 ATATAGATCTATATATCT
1 ATATAGATCTATATATCT
140561 ATATAGATCTATATATCT
1 ATATAGATCTATATATCT
140579 CTAGGGGCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44
Consensus pattern (18 bp):
ATATAGATCTATATATCT
Left flanking sequence: Indices 140043 -- 140542
CCATATATAGATATAGGGCCATAGAATATAGGGGCCCTATATCTATATATGGGGGGAGTCTAGAT
AGGGCTCGACCGGCTGCCAATCATGTCACGTATATAGTCTGGATGGACTATGGATTAGATAGTGA
GGCCATGCCATATACGTGAACATGAGAGAGGCATGCATGTGATGAAGATATAGAGAAAGAACCGT
CCAGACTAGAGCGATGCGCCATAGTCTAGTGATGCCCTTAGATATCTGTATGGGCCATAGTCCAT
CCAGACCATGGGCTCCAGATATAGATAGGGTGCTCGGCCGACCCTATCTATATATATATATGGGT
GCCTATTCGATTTCTATTTCTATGCCAACCGGACGACAGCGGTCCGCAGCGAGCCGACCCCTCTC
TTGCCCATAGAGTTCTATTTAGGTTAGGGCTACTATAGAGAGGAGAGTCCACTACTGCCCACTAC
TATAGGGGTCGAGCCATCAGGGACCAGCCGACCCCTCTCTTGCCC
Right flanking sequence: Indices 140579 -- 141078
CTAGGGGCCCACTACGGAGAGCCATATCTATAGAACTGTCGAGCCATCATCGAAAGCCGACCTGA
AGTGAGCGCAGAAATGACCCGACCCAGATATAGAAGATCTATAGGGAGGGGGGGGGCAGGGGTGG
GGGAGTCCCTAGGCTCTCTATAGAGGGCCCCCTCTACTCCCCTCTCTTGCCCATATCTAGAGAAT
ATAAGGGCCCATATATAGATAGGGCTACGCTCACCCGCCCCTCTCTATCGGCCCCCCCTCCCCCC
CCCCCTATTCTATCTTATCATCTGGGGGCGGCTAGGCTAGGCGAGGCTATATATACAGTCGGCAC
TCACTAGTCTAGTTGGCACCCTATAGAGAATATATGGCGCCCCTATCTAGAACTATAAGATAGGA
AGGGGTGGGGGGCACCCTGAACTATCCATCTGGGTCTGGGGTGTGAGCGATAGATCTAGATAATA
TATGGCACTCTCCAGGATCCGTTCCCCACCATATATAGATCCCCT
Found at i:141281 original size:6 final size:6
Alignment explanation
Indices: 141254--141298 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
141244 GATATATCTC
* * * *
141254 TCTCTA TATCTA TATCTC TCTCTA TCTCTC TCTCTA TCTCTA TCT
1 TCTCTA TCTCTA TCTCTA TCTCTA TCTCTA TCTCTA TCTCTA TCT
141299 ATAGTGTAGG
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.16, C:0.33, G:0.00, T:0.51
Consensus pattern (6 bp):
TCTCTA
Left flanking sequence: Indices 140754 -- 141253
CTTGCCCATATCTAGAGAATATAAGGGCCCATATATAGATAGGGCTACGCTCACCCGCCCCTCTC
TATCGGCCCCCCCTCCCCCCCCCCCTATTCTATCTTATCATCTGGGGGCGGCTAGGCTAGGCGAG
GCTATATATACAGTCGGCACTCACTAGTCTAGTTGGCACCCTATAGAGAATATATGGCGCCCCTA
TCTAGAACTATAAGATAGGAAGGGGTGGGGGGCACCCTGAACTATCCATCTGGGTCTGGGGTGTG
AGCGATAGATCTAGATAATATATGGCACTCTCCAGGATCCGTTCCCCACCATATATAGATCCCCT
ATTTAGAATTCTGAACTATGGAGGGGGCCCATCTATATATGGGGGTTGGGTTGGCCCTCTCTAGA
TATCTTGCCCTATATCCATATTTGTTCAGTCTGGACTATGGATAGTAGGTTGGTTCCAGCCCTAT
CTATCAATCAATCTTCGTTTCGTATGGGACGCATAGATATATCTC
Right flanking sequence: Indices 141299 -- 141798
ATAGTGTAGGGCACTCGACCCCCTCTAGAACTATGGGCCCTATCTATAGCTATAGTTCGGGGTGG
GGGCACTCCCCATAGATATATATAGAACACTAGGGGCCGCCCGTTTAGTTTCTAGATAGTGGGGG
CCCCTATCTAATATCTCACTAAACTCGGGGCGACAGCCGATAGCTTGCCCTTTCAATTTCTAGGG
GTTCTGCCCGGCCCTGCCCTATAGTTCACTCTGGGTAACTCTATAGAGAGTGGGGGCAGGCTGTA
TAGAGATCGGGAAGCTGGACAGCACTAGAGAGAAAGTTGTTCCAACTCCGCAACTCCGCTTCTCT
GGTCTCCCATAGAGAATGGTGCGAGTTGCGGAGAAAGTTGTTCCAACTCCGCAACTCCGCTTCTC
CACTCCTTCTTTATCTAGATATAGATAGATAGAGATATAGAGAGAGAGATAGAGAGAGATATAGA
TAGATAGATAGGGGATAGGGGGCACCGTACTTTCTTCCCTTTATT
Found at i:141719 original size:10 final size:10
Alignment explanation
Indices: 141704--141761 Score: 62
Period size: 10 Copynumber: 5.8 Consensus size: 10
141694 CTTCTTTATC
*
141704 TAGATATAGA
1 TAGATAGAGA
141714 TAGATAGAGA
1 TAGATAGAGA
* *
141724 TATAGAGAGA
1 TAGATAGAGA
*
141734 GAGATAGAGA
1 TAGATAGAGA
* *
141744 GAGATATAGA
1 TAGATAGAGA
141754 TAGATAGA
1 TAGATAGA
141762 TAGGGGATAG
Statistics
Matches: 39, Mismatches: 9, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
10 39 1.00
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (10 bp):
TAGATAGAGA
Left flanking sequence: Indices 141204 -- 141703
CCTATCTATCAATCAATCTTCGTTTCGTATGGGACGCATAGATATATCTCTCTCTATATCTATAT
CTCTCTCTATCTCTCTCTCTATCTCTATCTATAGTGTAGGGCACTCGACCCCCTCTAGAACTATG
GGCCCTATCTATAGCTATAGTTCGGGGTGGGGGCACTCCCCATAGATATATATAGAACACTAGGG
GCCGCCCGTTTAGTTTCTAGATAGTGGGGGCCCCTATCTAATATCTCACTAAACTCGGGGCGACA
GCCGATAGCTTGCCCTTTCAATTTCTAGGGGTTCTGCCCGGCCCTGCCCTATAGTTCACTCTGGG
TAACTCTATAGAGAGTGGGGGCAGGCTGTATAGAGATCGGGAAGCTGGACAGCACTAGAGAGAAA
GTTGTTCCAACTCCGCAACTCCGCTTCTCTGGTCTCCCATAGAGAATGGTGCGAGTTGCGGAGAA
AGTTGTTCCAACTCCGCAACTCCGCTTCTCCACTCCTTCTTTATC
Right flanking sequence: Indices 141762 -- 142261
TAGGGGATAGGGGGCACCGTACTTTCTTCCCTTTATTTCGGAGGCCCGAACGCAAACACAAACAC
CGAACTGACCGTGATCGAACAGATATAGATAGGGCACCGGAGAGAAGAGATATATAGATAGGGGC
GGGACCGAGACGAGATATTACATACATACATACATACATACATACATACATACATACATACATAC
ATACATACGCAATATGATCCATCCGGCCCTATATAGAGATAGATACGAGAACTCTAGATTTCGGC
CATATATCTATATTCTATATCTATATAGGGGGGAGGGTGAGTTTCTAGATTCTAGGGCGGGCCCC
CCATCCTATGATCTGACTCTATAGCCTAGCCTAATCCCTAACAATCTATCTATATGGGCGCCCTC
TCTATATATGGGGACGGCACTCAATACCACTCTATTCTGTTTCTCCCTGCAATCATTCCGGGCGC
CCTATCTATATAGATCTTGAACAGTGGTGTTGATCTCCATTCCAT
Found at i:141734 original size:12 final size:12
Alignment explanation
Indices: 141713--141753 Score: 64
Period size: 12 Copynumber: 3.4 Consensus size: 12
141703 CTAGATATAG
*
141713 ATAGATAGAGAT
1 ATAGAGAGAGAT
*
141725 ATAGAGAGAGAG
1 ATAGAGAGAGAT
141737 ATAGAGAGAGAT
1 ATAGAGAGAGAT
141749 ATAGA
1 ATAGA
141754 TAGATAGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 26 1.00
ACGTcount: A:0.51, C:0.00, G:0.32, T:0.17
Consensus pattern (12 bp):
ATAGAGAGAGAT
Left flanking sequence: Indices 141213 -- 141712
CAATCAATCTTCGTTTCGTATGGGACGCATAGATATATCTCTCTCTATATCTATATCTCTCTCTA
TCTCTCTCTCTATCTCTATCTATAGTGTAGGGCACTCGACCCCCTCTAGAACTATGGGCCCTATC
TATAGCTATAGTTCGGGGTGGGGGCACTCCCCATAGATATATATAGAACACTAGGGGCCGCCCGT
TTAGTTTCTAGATAGTGGGGGCCCCTATCTAATATCTCACTAAACTCGGGGCGACAGCCGATAGC
TTGCCCTTTCAATTTCTAGGGGTTCTGCCCGGCCCTGCCCTATAGTTCACTCTGGGTAACTCTAT
AGAGAGTGGGGGCAGGCTGTATAGAGATCGGGAAGCTGGACAGCACTAGAGAGAAAGTTGTTCCA
ACTCCGCAACTCCGCTTCTCTGGTCTCCCATAGAGAATGGTGCGAGTTGCGGAGAAAGTTGTTCC
AACTCCGCAACTCCGCTTCTCCACTCCTTCTTTATCTAGATATAG
Right flanking sequence: Indices 141754 -- 142253
TAGATAGATAGGGGATAGGGGGCACCGTACTTTCTTCCCTTTATTTCGGAGGCCCGAACGCAAAC
ACAAACACCGAACTGACCGTGATCGAACAGATATAGATAGGGCACCGGAGAGAAGAGATATATAG
ATAGGGGCGGGACCGAGACGAGATATTACATACATACATACATACATACATACATACATACATAC
ATACATACATACATACGCAATATGATCCATCCGGCCCTATATAGAGATAGATACGAGAACTCTAG
ATTTCGGCCATATATCTATATTCTATATCTATATAGGGGGGAGGGTGAGTTTCTAGATTCTAGGG
CGGGCCCCCCATCCTATGATCTGACTCTATAGCCTAGCCTAATCCCTAACAATCTATCTATATGG
GCGCCCTCTCTATATATGGGGACGGCACTCAATACCACTCTATTCTGTTTCTCCCTGCAATCATT
CCGGGCGCCCTATCTATATAGATCTTGAACAGTGGTGTTGATCTC
Found at i:141736 original size:14 final size:14
Alignment explanation
Indices: 141705--141747 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 14
141695 TTCTTTATCT
*
141705 AGATATAGATAGATAG
1 AGATATAG--AGAGAG
141721 AGATATAGAGAGAG
1 AGATATAGAGAGAG
*
141735 AGATAGAGAGAGA
1 AGATATAGAGAGA
141748 TATAGATAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
14 17 0.68
16 8 0.32
ACGTcount: A:0.51, C:0.00, G:0.33, T:0.16
Consensus pattern (14 bp):
AGATATAGAGAGAG
Left flanking sequence: Indices 141205 -- 141704
CTATCTATCAATCAATCTTCGTTTCGTATGGGACGCATAGATATATCTCTCTCTATATCTATATC
TCTCTCTATCTCTCTCTCTATCTCTATCTATAGTGTAGGGCACTCGACCCCCTCTAGAACTATGG
GCCCTATCTATAGCTATAGTTCGGGGTGGGGGCACTCCCCATAGATATATATAGAACACTAGGGG
CCGCCCGTTTAGTTTCTAGATAGTGGGGGCCCCTATCTAATATCTCACTAAACTCGGGGCGACAG
CCGATAGCTTGCCCTTTCAATTTCTAGGGGTTCTGCCCGGCCCTGCCCTATAGTTCACTCTGGGT
AACTCTATAGAGAGTGGGGGCAGGCTGTATAGAGATCGGGAAGCTGGACAGCACTAGAGAGAAAG
TTGTTCCAACTCCGCAACTCCGCTTCTCTGGTCTCCCATAGAGAATGGTGCGAGTTGCGGAGAAA
GTTGTTCCAACTCCGCAACTCCGCTTCTCCACTCCTTCTTTATCT
Right flanking sequence: Indices 141748 -- 142247
TATAGATAGATAGATAGGGGATAGGGGGCACCGTACTTTCTTCCCTTTATTTCGGAGGCCCGAAC
GCAAACACAAACACCGAACTGACCGTGATCGAACAGATATAGATAGGGCACCGGAGAGAAGAGAT
ATATAGATAGGGGCGGGACCGAGACGAGATATTACATACATACATACATACATACATACATACAT
ACATACATACATACATACATACGCAATATGATCCATCCGGCCCTATATAGAGATAGATACGAGAA
CTCTAGATTTCGGCCATATATCTATATTCTATATCTATATAGGGGGGAGGGTGAGTTTCTAGATT
CTAGGGCGGGCCCCCCATCCTATGATCTGACTCTATAGCCTAGCCTAATCCCTAACAATCTATCT
ATATGGGCGCCCTCTCTATATATGGGGACGGCACTCAATACCACTCTATTCTGTTTCTCCCTGCA
ATCATTCCGGGCGCCCTATCTATATAGATCTTGAACAGTGGTGTT
Found at i:141738 original size:24 final size:24
Alignment explanation
Indices: 141711--141764 Score: 81
Period size: 24 Copynumber: 2.2 Consensus size: 24
141701 ATCTAGATAT
*
141711 AGATAGATAGAGATATAGAGAGAG
1 AGATAGAGAGAGATATAGAGAGAG
* *
141735 AGATAGAGAGAGATATAGATAGAT
1 AGATAGAGAGAGATATAGAGAGAG
141759 AGATAG
1 AGATAG
141765 GGGATAGGGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.50, C:0.00, G:0.31, T:0.19
Consensus pattern (24 bp):
AGATAGAGAGAGATATAGAGAGAG
Left flanking sequence: Indices 141211 -- 141710
ATCAATCAATCTTCGTTTCGTATGGGACGCATAGATATATCTCTCTCTATATCTATATCTCTCTC
TATCTCTCTCTCTATCTCTATCTATAGTGTAGGGCACTCGACCCCCTCTAGAACTATGGGCCCTA
TCTATAGCTATAGTTCGGGGTGGGGGCACTCCCCATAGATATATATAGAACACTAGGGGCCGCCC
GTTTAGTTTCTAGATAGTGGGGGCCCCTATCTAATATCTCACTAAACTCGGGGCGACAGCCGATA
GCTTGCCCTTTCAATTTCTAGGGGTTCTGCCCGGCCCTGCCCTATAGTTCACTCTGGGTAACTCT
ATAGAGAGTGGGGGCAGGCTGTATAGAGATCGGGAAGCTGGACAGCACTAGAGAGAAAGTTGTTC
CAACTCCGCAACTCCGCTTCTCTGGTCTCCCATAGAGAATGGTGCGAGTTGCGGAGAAAGTTGTT
CCAACTCCGCAACTCCGCTTCTCCACTCCTTCTTTATCTAGATAT
Right flanking sequence: Indices 141765 -- 142264
GGGATAGGGGGCACCGTACTTTCTTCCCTTTATTTCGGAGGCCCGAACGCAAACACAAACACCGA
ACTGACCGTGATCGAACAGATATAGATAGGGCACCGGAGAGAAGAGATATATAGATAGGGGCGGG
ACCGAGACGAGATATTACATACATACATACATACATACATACATACATACATACATACATACATA
CATACGCAATATGATCCATCCGGCCCTATATAGAGATAGATACGAGAACTCTAGATTTCGGCCAT
ATATCTATATTCTATATCTATATAGGGGGGAGGGTGAGTTTCTAGATTCTAGGGCGGGCCCCCCA
TCCTATGATCTGACTCTATAGCCTAGCCTAATCCCTAACAATCTATCTATATGGGCGCCCTCTCT
ATATATGGGGACGGCACTCAATACCACTCTATTCTGTTTCTCCCTGCAATCATTCCGGGCGCCCT
ATCTATATAGATCTTGAACAGTGGTGTTGATCTCCATTCCATCAA
Found at i:141764 original size:12 final size:12
Alignment explanation
Indices: 141711--141764 Score: 63
Period size: 12 Copynumber: 4.5 Consensus size: 12
141701 ATCTAGATAT
*
141711 AGATAGATAGAG
1 AGATAGAGAGAG
*
141723 ATATAGAGAGAG
1 AGATAGAGAGAG
141735 AGATAGAGAGAG
1 AGATAGAGAGAG
* * *
141747 ATATAGATAGAT
1 AGATAGAGAGAG
141759 AGATAG
1 AGATAG
141765 GGGATAGGGG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
12 35 1.00
ACGTcount: A:0.50, C:0.00, G:0.31, T:0.19
Consensus pattern (12 bp):
AGATAGAGAGAG
Left flanking sequence: Indices 141211 -- 141710
ATCAATCAATCTTCGTTTCGTATGGGACGCATAGATATATCTCTCTCTATATCTATATCTCTCTC
TATCTCTCTCTCTATCTCTATCTATAGTGTAGGGCACTCGACCCCCTCTAGAACTATGGGCCCTA
TCTATAGCTATAGTTCGGGGTGGGGGCACTCCCCATAGATATATATAGAACACTAGGGGCCGCCC
GTTTAGTTTCTAGATAGTGGGGGCCCCTATCTAATATCTCACTAAACTCGGGGCGACAGCCGATA
GCTTGCCCTTTCAATTTCTAGGGGTTCTGCCCGGCCCTGCCCTATAGTTCACTCTGGGTAACTCT
ATAGAGAGTGGGGGCAGGCTGTATAGAGATCGGGAAGCTGGACAGCACTAGAGAGAAAGTTGTTC
CAACTCCGCAACTCCGCTTCTCTGGTCTCCCATAGAGAATGGTGCGAGTTGCGGAGAAAGTTGTT
CCAACTCCGCAACTCCGCTTCTCCACTCCTTCTTTATCTAGATAT
Right flanking sequence: Indices 141765 -- 142264
GGGATAGGGGGCACCGTACTTTCTTCCCTTTATTTCGGAGGCCCGAACGCAAACACAAACACCGA
ACTGACCGTGATCGAACAGATATAGATAGGGCACCGGAGAGAAGAGATATATAGATAGGGGCGGG
ACCGAGACGAGATATTACATACATACATACATACATACATACATACATACATACATACATACATA
CATACGCAATATGATCCATCCGGCCCTATATAGAGATAGATACGAGAACTCTAGATTTCGGCCAT
ATATCTATATTCTATATCTATATAGGGGGGAGGGTGAGTTTCTAGATTCTAGGGCGGGCCCCCCA
TCCTATGATCTGACTCTATAGCCTAGCCTAATCCCTAACAATCTATCTATATGGGCGCCCTCTCT
ATATATGGGGACGGCACTCAATACCACTCTATTCTGTTTCTCCCTGCAATCATTCCGGGCGCCCT
ATCTATATAGATCTTGAACAGTGGTGTTGATCTCCATTCCATCAA
Found at i:141919 original size:4 final size:4
Alignment explanation
Indices: 141910--141964 Score: 110
Period size: 4 Copynumber: 13.8 Consensus size: 4
141900 GACGAGATAT
141910 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
1 TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA TACA
141958 TACA TAC
1 TACA TAC
141965 GCAATATGAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 51 1.00
ACGTcount: A:0.49, C:0.25, G:0.00, T:0.25
Consensus pattern (4 bp):
TACA
Left flanking sequence: Indices 141410 -- 141909
AGTTTCTAGATAGTGGGGGCCCCTATCTAATATCTCACTAAACTCGGGGCGACAGCCGATAGCTT
GCCCTTTCAATTTCTAGGGGTTCTGCCCGGCCCTGCCCTATAGTTCACTCTGGGTAACTCTATAG
AGAGTGGGGGCAGGCTGTATAGAGATCGGGAAGCTGGACAGCACTAGAGAGAAAGTTGTTCCAAC
TCCGCAACTCCGCTTCTCTGGTCTCCCATAGAGAATGGTGCGAGTTGCGGAGAAAGTTGTTCCAA
CTCCGCAACTCCGCTTCTCCACTCCTTCTTTATCTAGATATAGATAGATAGAGATATAGAGAGAG
AGATAGAGAGAGATATAGATAGATAGATAGGGGATAGGGGGCACCGTACTTTCTTCCCTTTATTT
CGGAGGCCCGAACGCAAACACAAACACCGAACTGACCGTGATCGAACAGATATAGATAGGGCACC
GGAGAGAAGAGATATATAGATAGGGGCGGGACCGAGACGAGATAT
Right flanking sequence: Indices 141965 -- 142464
GCAATATGATCCATCCGGCCCTATATAGAGATAGATACGAGAACTCTAGATTTCGGCCATATATC
TATATTCTATATCTATATAGGGGGGAGGGTGAGTTTCTAGATTCTAGGGCGGGCCCCCCATCCTA
TGATCTGACTCTATAGCCTAGCCTAATCCCTAACAATCTATCTATATGGGCGCCCTCTCTATATA
TGGGGACGGCACTCAATACCACTCTATTCTGTTTCTCCCTGCAATCATTCCGGGCGCCCTATCTA
TATAGATCTTGAACAGTGGTGTTGATCTCCATTCCATCAATCCAATCGGCCACACATATCTTCGA
TTTTGCACACATATCTTCTGAACGAGATCCCTTCTCCAATCAGCGAATGCGAATGCGGATGCGGG
GGGGGTATGGATAGATGGCCTTCCCGGGCCCCTCCCCTATAGAGATCTGGGATATGGCGGACCGG
GCCCATGCCCATTCGTCTAGAGGGTCCCCCATACCATATAGAGTG
Found at i:143461 original size:6 final size:6
Alignment explanation
Indices: 143450--143476 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
143440 TACCTCTATA
143450 TGGAGG TGGAGG TGGAGG TGGAGG TGG
1 TGGAGG TGGAGG TGGAGG TGGAGG TGG
143477 CCATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.67, T:0.19
Consensus pattern (6 bp):
TGGAGG
Left flanking sequence: Indices 142950 -- 143449
CGAGGGTATAAAACACCGGTTGAATCGAAGCTAGCTGTGATCCATATATAGGGGAAGGGGATCGC
CTATAGATCTGAACTCCATATGGCAGATCGAGGGGCCCTTTCTATTCTATGGCCCTTCCCTCTGG
ATTGAGATGAGACGCTAGATTTGAATGGGGGGCTGGGCGCAATATCAATATAGAGAGTGGGGGTG
GGGGGAAGAGACTACATTTCAATATCGAGATAGAGAACCCTGAACTCTCTAGGCGGTTGAGATAT
AGTACAGTACGCTCCGAACTAGGCCGGAGAAGCCCTATCCCTATCCCTCTACTCTATCTCTCTCT
ATGGAGGGGGGAGTCGAGTTCTGCTATGCAGATCGAGATCGAGGGACCCATAGAACCCCTCTAAC
TCTAAATTGCCCCTATCTATGATTTCTATGGAGAGGGGGGGCCTAGGGGACTATATGGACTATAT
GCATGCCCGCCATCTATAGTTCTCTCCGAGGCCCCTACCTCTATA
Right flanking sequence: Indices 143477 -- 143976
CCATATATACCTATATTCTTAATTTCCTATCGGGCCACAGTCGAGGAGCCGCTATATAGAGATAG
TGGGCGGCTATATAGAGTTGCTATATCTATGGCCCCGCCTCTAAAGTCGGGGGTTGGGTACTCTC
GGCCAACCTCTATCTATATATGGGGATCGACCAACGCCAATCGGACAACTATCTAGAGTCTGGTC
GCCATATATAGATAGGGGCGCCCCAACCCCTATCTATGTAAGGTCCCCCCTATCTCTACTCTATA
TTGGGGTGGGCTCAGGAAACAAACCCAATCCCAATCTATATAGCCAGCCAGAATCTATATAGAGG
ATAAGAAGATAAGACCCTGAACTATCTATATGGCCGGCCGCTTGGAACAGAAGCTCGAGCTGTCC
ATACCATACTGGAGTTAGTACCTCTGCCCGGGAGGCCGAGGAGCCTACTCTATGCGCAGCCGCCA
TATCTGTATAGGGGTCAATTCGAACTAGCTGGAGCCCGGGGTATA
Found at i:144620 original size:6 final size:6
Alignment explanation
Indices: 144605--144652 Score: 51
Period size: 6 Copynumber: 8.0 Consensus size: 6
144595 CTGAGTCCCC
* * * * *
144605 ATATAG ATATAT ATATAT ATATAT CTATAT AGATCT ATATCT ATATAT
1 ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT ATATAT
144653 CTAGATGGGG
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
6 35 1.00
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (6 bp):
ATATAT
Left flanking sequence: Indices 144105 -- 144604
CCGCCAACTCTCTTCCCGGCCCCCAGATAAGATATAGATAGGGGCCCCTCTATATATATGGGGGG
GACCCCGGCCCATATAGAACTATCTGGGAGAGGACCCCTGAACTATCTAGATATAGGCGACCGCC
CACGCCCACCTATTGAGCTATATAGGTGGAGGTGGCCATATATAGATCCTATCTTGGAAGAGAAA
TCTTATCTCGATATATAGGGCCGAAGATATATAGGGAGGGGTTGGGAAGGAAAGGTTGGGTATAT
ATCTATCTAGATGGGGGGCGGGGCACCCATCTGCATAAACCATAGAATCATAGAAAACTTCTTTG
CAGATCCCCCTTCTCATCTTGCGGGTTCCCGGTTGGAGATCCATAGTCTATATAGAGAGTGGGGG
CCCCTATCTAGACCTATCTATCGAGTCGGGCAACAAATGATCTAATCCAATCTGATCTAATCCCC
GGGCTCTCCCGCTGGACGGTAGAGCATCCTTCGGTCTGAGTCCCC
Right flanking sequence: Indices 144653 -- 145152
CTAGATGGGGCCGTCATCCCTCTGTCTGATCAGAGCATCCGGCCCTGAACTATCTATATGGCATT
GCTCATTAACTAGGCTAGTCGAAAGGTTTGGAAGCTGGTCCCCTATCCATATATGGCGTTTGCTC
TCTATATCTAGTGCCTGCCATCTAGTCGTTTGATCTCTGGCTCCGTCGCCATACCATATAGAGAG
TAGAGGGTGCTGACTATAGATATGACATTCGGTCGATTCGATGCATCCATCCGGGGACTGCCGGG
GGGCCGACAGCCGGGGTTATGATCTATTCTATAGAGGGCCCCAACGGCCTACTGGAGAGAGCTGG
GGAACGAGCCCAGCCCTATATATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCT
TATCTTATCTTATCTTATCTCGAGGGGAGAGCTATATAGATAGATATATGGCGACGGCCCCCAGA
ATTGGGTTAGGCCCTCTCCCGACGTCCCACTCCTACTATACATAG
Found at i:144622 original size:8 final size:8
Alignment explanation
Indices: 144605--144652 Score: 51
Period size: 8 Copynumber: 6.0 Consensus size: 8
144595 CTGAGTCCCC
*
144605 ATATAGAT
1 ATATATAT
144613 ATATATAT
1 ATATATAT
144621 ATATATAT
1 ATATATAT
* *
144629 CTATATAG
1 ATATATAT
*
144637 ATCTATAT
1 ATATATAT
*
144645 CTATATAT
1 ATATATAT
144653 CTAGATGGGG
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
8 32 1.00
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (8 bp):
ATATATAT
Left flanking sequence: Indices 144105 -- 144604
CCGCCAACTCTCTTCCCGGCCCCCAGATAAGATATAGATAGGGGCCCCTCTATATATATGGGGGG
GACCCCGGCCCATATAGAACTATCTGGGAGAGGACCCCTGAACTATCTAGATATAGGCGACCGCC
CACGCCCACCTATTGAGCTATATAGGTGGAGGTGGCCATATATAGATCCTATCTTGGAAGAGAAA
TCTTATCTCGATATATAGGGCCGAAGATATATAGGGAGGGGTTGGGAAGGAAAGGTTGGGTATAT
ATCTATCTAGATGGGGGGCGGGGCACCCATCTGCATAAACCATAGAATCATAGAAAACTTCTTTG
CAGATCCCCCTTCTCATCTTGCGGGTTCCCGGTTGGAGATCCATAGTCTATATAGAGAGTGGGGG
CCCCTATCTAGACCTATCTATCGAGTCGGGCAACAAATGATCTAATCCAATCTGATCTAATCCCC
GGGCTCTCCCGCTGGACGGTAGAGCATCCTTCGGTCTGAGTCCCC
Right flanking sequence: Indices 144653 -- 145152
CTAGATGGGGCCGTCATCCCTCTGTCTGATCAGAGCATCCGGCCCTGAACTATCTATATGGCATT
GCTCATTAACTAGGCTAGTCGAAAGGTTTGGAAGCTGGTCCCCTATCCATATATGGCGTTTGCTC
TCTATATCTAGTGCCTGCCATCTAGTCGTTTGATCTCTGGCTCCGTCGCCATACCATATAGAGAG
TAGAGGGTGCTGACTATAGATATGACATTCGGTCGATTCGATGCATCCATCCGGGGACTGCCGGG
GGGCCGACAGCCGGGGTTATGATCTATTCTATAGAGGGCCCCAACGGCCTACTGGAGAGAGCTGG
GGAACGAGCCCAGCCCTATATATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCT
TATCTTATCTTATCTTATCTCGAGGGGAGAGCTATATAGATAGATATATGGCGACGGCCCCCAGA
ATTGGGTTAGGCCCTCTCCCGACGTCCCACTCCTACTATACATAG
Found at i:144624 original size:10 final size:10
Alignment explanation
Indices: 144605--144652 Score: 51
Period size: 10 Copynumber: 4.8 Consensus size: 10
144595 CTGAGTCCCC
*
144605 ATATAGATAT
1 ATATATATAT
144615 ATATATATAT
1 ATATATATAT
*
144625 ATATCTATAT
1 ATATATATAT
* *
144635 AGATCTATAT
1 ATATATATAT
*
144645 CTATATAT
1 ATATATAT
144653 CTAGATGGGG
Statistics
Matches: 32, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
10 32 1.00
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (10 bp):
ATATATATAT
Left flanking sequence: Indices 144105 -- 144604
CCGCCAACTCTCTTCCCGGCCCCCAGATAAGATATAGATAGGGGCCCCTCTATATATATGGGGGG
GACCCCGGCCCATATAGAACTATCTGGGAGAGGACCCCTGAACTATCTAGATATAGGCGACCGCC
CACGCCCACCTATTGAGCTATATAGGTGGAGGTGGCCATATATAGATCCTATCTTGGAAGAGAAA
TCTTATCTCGATATATAGGGCCGAAGATATATAGGGAGGGGTTGGGAAGGAAAGGTTGGGTATAT
ATCTATCTAGATGGGGGGCGGGGCACCCATCTGCATAAACCATAGAATCATAGAAAACTTCTTTG
CAGATCCCCCTTCTCATCTTGCGGGTTCCCGGTTGGAGATCCATAGTCTATATAGAGAGTGGGGG
CCCCTATCTAGACCTATCTATCGAGTCGGGCAACAAATGATCTAATCCAATCTGATCTAATCCCC
GGGCTCTCCCGCTGGACGGTAGAGCATCCTTCGGTCTGAGTCCCC
Right flanking sequence: Indices 144653 -- 145152
CTAGATGGGGCCGTCATCCCTCTGTCTGATCAGAGCATCCGGCCCTGAACTATCTATATGGCATT
GCTCATTAACTAGGCTAGTCGAAAGGTTTGGAAGCTGGTCCCCTATCCATATATGGCGTTTGCTC
TCTATATCTAGTGCCTGCCATCTAGTCGTTTGATCTCTGGCTCCGTCGCCATACCATATAGAGAG
TAGAGGGTGCTGACTATAGATATGACATTCGGTCGATTCGATGCATCCATCCGGGGACTGCCGGG
GGGCCGACAGCCGGGGTTATGATCTATTCTATAGAGGGCCCCAACGGCCTACTGGAGAGAGCTGG
GGAACGAGCCCAGCCCTATATATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCT
TATCTTATCTTATCTTATCTCGAGGGGAGAGCTATATAGATAGATATATGGCGACGGCCCCCAGA
ATTGGGTTAGGCCCTCTCCCGACGTCCCACTCCTACTATACATAG
Found at i:145006 original size:5 final size:5
Alignment explanation
Indices: 144998--145062 Score: 130
Period size: 5 Copynumber: 13.0 Consensus size: 5
144988 CAGCCCTATA
144998 TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT
1 TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT
145048 TATCT TATCT TATCT
1 TATCT TATCT TATCT
145063 CGAGGGGAGA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 60 1.00
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.60
Consensus pattern (5 bp):
TATCT
Left flanking sequence: Indices 144498 -- 144997
CTATCTAGACCTATCTATCGAGTCGGGCAACAAATGATCTAATCCAATCTGATCTAATCCCCGGG
CTCTCCCGCTGGACGGTAGAGCATCCTTCGGTCTGAGTCCCCATATAGATATATATATATATATA
TCTATATAGATCTATATCTATATATCTAGATGGGGCCGTCATCCCTCTGTCTGATCAGAGCATCC
GGCCCTGAACTATCTATATGGCATTGCTCATTAACTAGGCTAGTCGAAAGGTTTGGAAGCTGGTC
CCCTATCCATATATGGCGTTTGCTCTCTATATCTAGTGCCTGCCATCTAGTCGTTTGATCTCTGG
CTCCGTCGCCATACCATATAGAGAGTAGAGGGTGCTGACTATAGATATGACATTCGGTCGATTCG
ATGCATCCATCCGGGGACTGCCGGGGGGCCGACAGCCGGGGTTATGATCTATTCTATAGAGGGCC
CCAACGGCCTACTGGAGAGAGCTGGGGAACGAGCCCAGCCCTATA
Right flanking sequence: Indices 145063 -- 145562
CGAGGGGAGAGCTATATAGATAGATATATGGCGACGGCCCCCAGAATTGGGTTAGGCCCTCTCCC
GACGTCCCACTCCTACTATACATAGAAAGGAATAAAGAACTATCTCCCCCTCTATAGAGAACTGA
TAAGATAAGATAGGATAAGATAAGATAAGATATAATAAGGGAGGGGGGGGGCCCGCCCCATATAG
ATAAGATATAGAGAATACCGAGATAAGATAGAATAGAGAGGGGCTCGGGAGCCGAGATAAGATAG
AATAGAGAGGGGGGGGGCCCGCCGGCCCTATAGAATCTATAGAGAGGGGGGCCCGAACTCGGCCC
GCCCCAGATAGATAAGATATAGAGGGAGGGGGCCCGCCCCGGATAGATATACTTCATGGAGGGAC
CATAGATGGGAGGTAAAGATTTATCCCGTAAGTTCAGCCGTGGAATGTCATGCCTATATAGAGAG
AGGGGGGGCCACCGGTGGACAGGCAGACCCCCTCTCTCTATATGG
Found at i:145201 original size:5 final size:5
Alignment explanation
Indices: 145191--145224 Score: 59
Period size: 5 Copynumber: 6.8 Consensus size: 5
145181 ATAGAGAACT
*
145191 GATAA GATAA GATAG GATAA GATAA GATAA GATA
1 GATAA GATAA GATAA GATAA GATAA GATAA GATA
145225 TAATAAGGGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 27 1.00
ACGTcount: A:0.56, C:0.00, G:0.24, T:0.21
Consensus pattern (5 bp):
GATAA
Left flanking sequence: Indices 144691 -- 145190
CCGGCCCTGAACTATCTATATGGCATTGCTCATTAACTAGGCTAGTCGAAAGGTTTGGAAGCTGG
TCCCCTATCCATATATGGCGTTTGCTCTCTATATCTAGTGCCTGCCATCTAGTCGTTTGATCTCT
GGCTCCGTCGCCATACCATATAGAGAGTAGAGGGTGCTGACTATAGATATGACATTCGGTCGATT
CGATGCATCCATCCGGGGACTGCCGGGGGGCCGACAGCCGGGGTTATGATCTATTCTATAGAGGG
CCCCAACGGCCTACTGGAGAGAGCTGGGGAACGAGCCCAGCCCTATATATCTTATCTTATCTTAT
CTTATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCTCGAGGGGAGAGCTATATA
GATAGATATATGGCGACGGCCCCCAGAATTGGGTTAGGCCCTCTCCCGACGTCCCACTCCTACTA
TACATAGAAAGGAATAAAGAACTATCTCCCCCTCTATAGAGAACT
Right flanking sequence: Indices 145225 -- 145724
TAATAAGGGAGGGGGGGGGCCCGCCCCATATAGATAAGATATAGAGAATACCGAGATAAGATAGA
ATAGAGAGGGGCTCGGGAGCCGAGATAAGATAGAATAGAGAGGGGGGGGGCCCGCCGGCCCTATA
GAATCTATAGAGAGGGGGGCCCGAACTCGGCCCGCCCCAGATAGATAAGATATAGAGGGAGGGGG
CCCGCCCCGGATAGATATACTTCATGGAGGGACCATAGATGGGAGGTAAAGATTTATCCCGTAAG
TTCAGCCGTGGAATGTCATGCCTATATAGAGAGAGGGGGGGCCACCGGTGGACAGGCAGACCCCC
TCTCTCTATATGGGGTGCGCCCTATCCCTATCTAGATAAGGGAAGGGCGGATGCACGCCTAATGC
CTAATGCCTAATACTTAGGGGAGAGGAGAATATATCTACTCTACTCCCATATAGAGATAGGGGGG
GGGGTACTCGATAGATCGAGGGCGTCCATCTCATCTATTCCATAG
Found at i:148640 original size:5 final size:5
Alignment explanation
Indices: 148630--148664 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
148620 GAGAGATATA
148630 TATCT TATCT TATCT TATCT TATCT TATCT TATCT
1 TATCT TATCT TATCT TATCT TATCT TATCT TATCT
148665 GAGAGAGATA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.60
Consensus pattern (5 bp):
TATCT
Left flanking sequence: Indices 148130 -- 148629
CTATGGAGGGGGGGGGTCGAGTCGAGCCCCCACCCCATAGAAAGTATGGATAGGGCCATCCATTA
TCCATTATATACGTGATACGACTGATATCACGTATCACGTATAGAGTCTAATAGATGTAGATGGA
TGTGTACCGAGAGGGCCCCCCTATATATAGAACATATAACTATAGAACTTCATCGGGTCGCCTAT
TCTCTATAGCCGCCCCCCGGGCCGGCGGCCTACTCTCTCTAGCTAGGGGCCCTATCTATATGGGG
ATGGGGCTCCCCTATAGAGTAATATTATCTTATCTCCCACGTCAGGGCGAGTTTCAGACCCAGAC
ACTCCCTGGATATGTGGTATAGGTCACGTATGGAATATACAGTTTTCGTCTCCGCCCCCAAGGGT
CTCCAGATATGGATATAGAGAGTCGAGATAGAGAGAGAGATATATATCTGAGAGAGATACAGAGT
GAGTCGAGAGAGATATATATCTTATCTGAGAGATCGAGAGATATA
Right flanking sequence: Indices 148665 -- 149164
GAGAGAGATACAGATAGAGAGAGAGATAGATCTAGATGGTCTCTCTCTATCTGCTCGGATCTCTA
TGGAGAGAGGTATGACCTGAACTCCGACTGATGGATGATGCATCAGTTTTGTTAGCGTGATATCA
GTCGTATCACGTATATGATAGATGGATGCTCCCGCCGATGCCGGAAGGGACTGACTGCCGGGCCC
CTCTCTATCTAGCGTGATATCAGTCGTATCACAGTCGTATCAGGATAGAATGGAGTCACCTACAC
CTACAGTCATAATAGAGATCACCTACACCTACAGTCATAATAGAGATGGGAGAGGGCTCGACCTT
TCTTCAATCCCCGCCCCCCTGACTCCTCTACCCATAGCGTTCATTCAGCCATATATATCATATCA
TATCATATCATATCATATCATATCATATCATATCATATCATCTGGGGGCGGCCATCTAGATCCAT
CTCTCTACTCTATATAGGGGCGGGGGAGATCTATGGGGAGGACAG
Found at i:148955 original size:28 final size:28
Alignment explanation
Indices: 148915--148971 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
148905 TAGAATGGAG
148915 TCACCTACACCTACAGTCATAATAGAGA
1 TCACCTACACCTACAGTCATAATAGAGA
148943 TCACCTACACCTACAGTCATAATAGAGA
1 TCACCTACACCTACAGTCATAATAGAGA
148971 T
1 T
148972 GGGAGAGGGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.39, C:0.28, G:0.11, T:0.23
Consensus pattern (28 bp):
TCACCTACACCTACAGTCATAATAGAGA
Left flanking sequence: Indices 148415 -- 148914
TATCTTATCTCCCACGTCAGGGCGAGTTTCAGACCCAGACACTCCCTGGATATGTGGTATAGGTC
ACGTATGGAATATACAGTTTTCGTCTCCGCCCCCAAGGGTCTCCAGATATGGATATAGAGAGTCG
AGATAGAGAGAGAGATATATATCTGAGAGAGATACAGAGTGAGTCGAGAGAGATATATATCTTAT
CTGAGAGATCGAGAGATATATATCTTATCTTATCTTATCTTATCTTATCTTATCTGAGAGAGATA
CAGATAGAGAGAGAGATAGATCTAGATGGTCTCTCTCTATCTGCTCGGATCTCTATGGAGAGAGG
TATGACCTGAACTCCGACTGATGGATGATGCATCAGTTTTGTTAGCGTGATATCAGTCGTATCAC
GTATATGATAGATGGATGCTCCCGCCGATGCCGGAAGGGACTGACTGCCGGGCCCCTCTCTATCT
AGCGTGATATCAGTCGTATCACAGTCGTATCAGGATAGAATGGAG
Right flanking sequence: Indices 148972 -- 149471
GGGAGAGGGCTCGACCTTTCTTCAATCCCCGCCCCCCTGACTCCTCTACCCATAGCGTTCATTCA
GCCATATATATCATATCATATCATATCATATCATATCATATCATATCATATCATATCATCTGGGG
GCGGCCATCTAGATCCATCTCTCTACTCTATATAGGGGCGGGGGAGATCTATGGGGAGGACAGGA
CCCGCTGCTGGGCTCGGCCGACGGTATCGGTATTATATCTCTATCTCGTATCTCTATCTCGTATA
CTCCAATCCCTATCTACTATCTCTATATAGACTCATCCAGGTCAGGTCGAGGGCGGCTATAGTTA
GAGTTCCCTATCCAAATCGGGTGCCAATGAAACTCTATCTCTAGACAGTGCCAATTAAACTATAT
ACTGCACTCCCCCGACAGAGGAGCGCGGCTATATAGATAGAGGCGGGCCCATCTAGAGAGAGGGG
AGGGCGCCGACGGGCCCCTATCTCCCTATCTCTATATAGACTAGA
Found at i:149054 original size:5 final size:5
Alignment explanation
Indices: 149039--149095 Score: 107
Period size: 5 Copynumber: 11.6 Consensus size: 5
149029 TTCATTCAGC
149039 CATAT -ATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT
1 CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT CATAT
149088 CATAT CAT
1 CATAT CAT
149096 CTGGGGGCGG
Statistics
Matches: 51, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.08
5 47 0.92
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.40
Consensus pattern (5 bp):
CATAT
Left flanking sequence: Indices 148539 -- 149038
GAGTCGAGATAGAGAGAGAGATATATATCTGAGAGAGATACAGAGTGAGTCGAGAGAGATATATA
TCTTATCTGAGAGATCGAGAGATATATATCTTATCTTATCTTATCTTATCTTATCTTATCTGAGA
GAGATACAGATAGAGAGAGAGATAGATCTAGATGGTCTCTCTCTATCTGCTCGGATCTCTATGGA
GAGAGGTATGACCTGAACTCCGACTGATGGATGATGCATCAGTTTTGTTAGCGTGATATCAGTCG
TATCACGTATATGATAGATGGATGCTCCCGCCGATGCCGGAAGGGACTGACTGCCGGGCCCCTCT
CTATCTAGCGTGATATCAGTCGTATCACAGTCGTATCAGGATAGAATGGAGTCACCTACACCTAC
AGTCATAATAGAGATCACCTACACCTACAGTCATAATAGAGATGGGAGAGGGCTCGACCTTTCTT
CAATCCCCGCCCCCCTGACTCCTCTACCCATAGCGTTCATTCAGC
Right flanking sequence: Indices 149096 -- 149595
CTGGGGGCGGCCATCTAGATCCATCTCTCTACTCTATATAGGGGCGGGGGAGATCTATGGGGAGG
ACAGGACCCGCTGCTGGGCTCGGCCGACGGTATCGGTATTATATCTCTATCTCGTATCTCTATCT
CGTATACTCCAATCCCTATCTACTATCTCTATATAGACTCATCCAGGTCAGGTCGAGGGCGGCTA
TAGTTAGAGTTCCCTATCCAAATCGGGTGCCAATGAAACTCTATCTCTAGACAGTGCCAATTAAA
CTATATACTGCACTCCCCCGACAGAGGAGCGCGGCTATATAGATAGAGGCGGGCCCATCTAGAGA
GAGGGGAGGGCGCCGACGGGCCCCTATCTCCCTATCTCTATATAGACTAGATGCTATGCTCGGGA
GGATCTAGACATAGCTGGTCCCTATCTATCTATATACCAACCCTAGGGCCCCTATAGATCGATCT
ATCCCCAGATAGAACTATAGGATAGGGTAGGGCCGCCCAGATTTG
Found at i:149220 original size:13 final size:13
Alignment explanation
Indices: 149202--149230 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
149192 ATCGGTATTA
149202 TATCTCTATCTCG
1 TATCTCTATCTCG
149215 TATCTCTATCTCG
1 TATCTCTATCTCG
149228 TAT
1 TAT
149231 ACTCCAATCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.17, C:0.28, G:0.07, T:0.48
Consensus pattern (13 bp):
TATCTCTATCTCG
Left flanking sequence: Indices 148702 -- 149201
GGTCTCTCTCTATCTGCTCGGATCTCTATGGAGAGAGGTATGACCTGAACTCCGACTGATGGATG
ATGCATCAGTTTTGTTAGCGTGATATCAGTCGTATCACGTATATGATAGATGGATGCTCCCGCCG
ATGCCGGAAGGGACTGACTGCCGGGCCCCTCTCTATCTAGCGTGATATCAGTCGTATCACAGTCG
TATCAGGATAGAATGGAGTCACCTACACCTACAGTCATAATAGAGATCACCTACACCTACAGTCA
TAATAGAGATGGGAGAGGGCTCGACCTTTCTTCAATCCCCGCCCCCCTGACTCCTCTACCCATAG
CGTTCATTCAGCCATATATATCATATCATATCATATCATATCATATCATATCATATCATATCATA
TCATCTGGGGGCGGCCATCTAGATCCATCTCTCTACTCTATATAGGGGCGGGGGAGATCTATGGG
GAGGACAGGACCCGCTGCTGGGCTCGGCCGACGGTATCGGTATTA
Right flanking sequence: Indices 149231 -- 149730
ACTCCAATCCCTATCTACTATCTCTATATAGACTCATCCAGGTCAGGTCGAGGGCGGCTATAGTT
AGAGTTCCCTATCCAAATCGGGTGCCAATGAAACTCTATCTCTAGACAGTGCCAATTAAACTATA
TACTGCACTCCCCCGACAGAGGAGCGCGGCTATATAGATAGAGGCGGGCCCATCTAGAGAGAGGG
GAGGGCGCCGACGGGCCCCTATCTCCCTATCTCTATATAGACTAGATGCTATGCTCGGGAGGATC
TAGACATAGCTGGTCCCTATCTATCTATATACCAACCCTAGGGCCCCTATAGATCGATCTATCCC
CAGATAGAACTATAGGATAGGGTAGGGCCGCCCAGATTTGATGGATGGGGCCATCTATCTAGACT
CTATAGAGGCCATCTCTCTATACTCGCCAACTAAACTCTATATAGTCGAGGAAGGGGAGGGCCCC
CTATCTCTCTCTATATGCCCCCTCGACCAATGGACGAACGAATTG
Found at i:153091 original size:5 final size:5
Alignment explanation
Indices: 153081--153113 Score: 66
Period size: 5 Copynumber: 6.6 Consensus size: 5
153071 ATCTAGAACT
153081 ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATA
1 ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATA
153114 GGAAGGGGTG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 28 1.00
ACGTcount: A:0.61, C:0.00, G:0.18, T:0.21
Consensus pattern (5 bp):
ATAAG
Left flanking sequence: Indices 152581 -- 153080
CCCGAATGTCTTAGAGAGGGCCTCTCTAACCGGGAGTGGTGGGTGTCCGCTCCGGCCATTCCTGG
CTCGGCTCCGATCACGCTATTCCGGGAGGAGTCGAAGGGCACTGGATGGAAGGAGAACGTGTGAC
GCTGGGTTGGGGTTTGGTCCACCAACTGGTCGCTCCTCTGGTTTCAGTACCGGGGAACCGCCCAT
TGCGGTTACACCTTCGGAATACCCCTCCAAGGAGATTCATTTCGCCCCCCAATCCGAACTGACTT
TACGCCATACTCTCGGCCTTCTGCACGTAGGGGGACATAGCCCGTCCCGTGTGGCGAGTTTGGGA
GGGGAATTAGGAGTAGAGAGATTCGGAGTAGAGAGACTCCTTCCCCGGCCCCTATCTAGAACTAT
AAGATAAGATAGTTGGGCCTATCTAGAATTCTATATAATATCTGGAGGGGGGGGCCTATCCATAT
ATGGGGGCGATATATAGACATCTAGGGGTCACCCTATCTAGAACT
Right flanking sequence: Indices 153114 -- 153613
GGAAGGGGTGGGGGGCGCCCCTATAGAGATATAGGCCGGTCGAGGAGTGAGCGTAGCGAACCACC
CTATAGATCTATACTCTATGGCTAACCGGCGCCCCCATAGATCTATATAGGGGGGTTAGGCCTAT
AGATCTATGGGGGCGGGGGTGAGCGATAGGGCTATATAGAGTTTAGTTGGCGCTCGACCCCCCCC
CTCTCTCTATATGGGTCGAGGCACCCTCTAGACTCTATACTCTCTATATGGCGACCCCCACCTCC
CCTATATATCTATATCTGGCCATATCCCAGATCTTGGGGATGGGGAGGACGAGGACTTCCCCCGA
CCCATGAGGGGGGGGGGCCGGCGCCCCCATATAGATCTATATAGAGAGAGAGAGGGGCCCCCGGC
CGTTAGGCCGAGGGCCCCTCTCTCTCTATGGGGCACTCTCCTAGTTCCCTCGTGCCGACGAGAGG
AGGGAGAGGGCCCCTATCTAGATATGGGGGGCTCCCTCTATATCT
Found at i:153944 original size:4 final size:4
Alignment explanation
Indices: 153937--153967 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
153927 TAGATATCTA
153937 TATC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TAT
153968 ATCCATATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.00, T:0.52
Consensus pattern (4 bp):
TATC
Left flanking sequence: Indices 153437 -- 153936
GACCCATGAGGGGGGGGGGCCGGCGCCCCCATATAGATCTATATAGAGAGAGAGAGGGGCCCCCG
GCCGTTAGGCCGAGGGCCCCTCTCTCTCTATGGGGCACTCTCCTAGTTCCCTCGTGCCGACGAGA
GGAGGGAGAGGGCCCCTATCTAGATATGGGGGGCTCCCTCTATATCTATATGCCTATATATCTAT
ATGGGGCCCCTATCTCCCCTCTATTCTATGGAGGGGGGGGGGGGGCGGCGTCGGCACTCCCCCGC
CCCTACCCTCTATATCCCCTCTCTAGAGAAGGGGGGGGGCCTATAGATCTTATATCTATTCGGGC
CTCCCCGACGGCCTACTAGATATAGCTGGGCTGGGCCCTATATCCCTAGTTCGGGGGGCCAACGG
GAGAGGATTCTATTATAATCTAGAAGATTCTGGAAGATTCTAGAATACGTAGGGGGTTCTAGTCA
TAGTTCTATGCTCCCTCTATATAGATAGATATAGATAGATATCTA
Right flanking sequence: Indices 153968 -- 154467
ATCCATATGGCGACGGCCTACGCCGGTTCATGAATCGCCCCCAGATAAATAAGATAAGATAGTTC
AGGGAGGGGGCTCCCCTAGATTCTCTAAATGAATTCGAGGAGGCCGAGGGCCTTTCGACGTAGGA
GGGGGGAGGGTCCCCGGCCCCCTATAGAGATATATAGATGGGGAGAGGAGGACGAGCCCCCCCTC
TAGACTCTATATATGGGTTAGATAGGCCCTCGACCAACGGGAGAGGCGACGAAAGGTCATTGATT
AATCGCTCGGCCCCCTATATATATAGATATGGGGCCGAGGAGAGGGCGGCTATATATCTAGTCGG
CACCCCCCCCCCCCTCCTAGTTCAGATTAGAGATATGGCGACGGCCTACTATACTATACTATACT
ATACTATACTATACTATACTATATAGAGTTGGGAGAGGAGGCCCGGGGTTACCCTACCCTATCTA
TATATGGGGGCCCTTGAAATTTCTAGTCTAGGGGCTATAGGCCGC
Found at i:154349 original size:5 final size:5
Alignment explanation
Indices: 154339--154380 Score: 84
Period size: 5 Copynumber: 8.4 Consensus size: 5
154329 GGCGACGGCC
154339 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TA
1 TACTA TACTA TACTA TACTA TACTA TACTA TACTA TACTA TA
154381 TAGAGTTGGG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 37 1.00
ACGTcount: A:0.40, C:0.19, G:0.00, T:0.40
Consensus pattern (5 bp):
TACTA
Left flanking sequence: Indices 153839 -- 154338
TTATAATCTAGAAGATTCTGGAAGATTCTAGAATACGTAGGGGGTTCTAGTCATAGTTCTATGCT
CCCTCTATATAGATAGATATAGATAGATATCTATATCTATCTATCTATCTATCTATCTATCTATA
TCCATATGGCGACGGCCTACGCCGGTTCATGAATCGCCCCCAGATAAATAAGATAAGATAGTTCA
GGGAGGGGGCTCCCCTAGATTCTCTAAATGAATTCGAGGAGGCCGAGGGCCTTTCGACGTAGGAG
GGGGGAGGGTCCCCGGCCCCCTATAGAGATATATAGATGGGGAGAGGAGGACGAGCCCCCCCTCT
AGACTCTATATATGGGTTAGATAGGCCCTCGACCAACGGGAGAGGCGACGAAAGGTCATTGATTA
ATCGCTCGGCCCCCTATATATATAGATATGGGGCCGAGGAGAGGGCGGCTATATATCTAGTCGGC
ACCCCCCCCCCCCTCCTAGTTCAGATTAGAGATATGGCGACGGCC
Right flanking sequence: Indices 154381 -- 154880
TAGAGTTGGGAGAGGAGGCCCGGGGTTACCCTACCCTATCTATATATGGGGGCCCTTGAAATTTC
TAGTCTAGGGGCTATAGGCCGCGAAGGGAGATCGGACGGAAATAACACCGGTAGTTGTCCAGTCG
TACCCAAACGATAATATTCCAGAGGGAAATGCGCCTAAAATCAAATATTTCAAGCCGGCTTCCGT
GGAAAATTCAGAGTTCCTTTTCGATGCTGCGATCACATAAGGACATAGACTCTGAAGCTCAATAG
CTGAGTACATAGCGATTAGATCATAAGCCGAGATCATAAAGAGCATACTGCTAGTAGGAAGTGGG
ATTGAGACAATGAATTCAGAAGCATTGAACCTATCTTGTTCGAAATAATCGAAGCACATCAGGAT
GGTACCAGCCGTACTTAATAGAAGAAAGATTTGGCGGTAATATGTAAAATCGTCTTTCCTAAAGA
AATTATTCCAGAAGAAATGGGCGATAGTTAGGAGAGGTGCGCCAG
Found at i:155162 original size:16 final size:16
Alignment explanation
Indices: 155141--155172 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
155131 ACTACACTAA
*
155141 GTTACTGAACTGAAGC
1 GTTACTGAACCGAAGC
155157 GTTACTGAACCGAAGC
1 GTTACTGAACCGAAGC
155173 AAGCAAAGCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.22, G:0.25, T:0.22
Consensus pattern (16 bp):
GTTACTGAACCGAAGC
Left flanking sequence: Indices 154641 -- 155140
CTGAGTACATAGCGATTAGATCATAAGCCGAGATCATAAAGAGCATACTGCTAGTAGGAAGTGGG
ATTGAGACAATGAATTCAGAAGCATTGAACCTATCTTGTTCGAAATAATCGAAGCACATCAGGAT
GGTACCAGCCGTACTTAATAGAAGAAAGATTTGGCGGTAATATGTAAAATCGTCTTTCCTAAAGA
AATTATTCCAGAAGAAATGGGCGATAGTTAGGAGAGGTGCGCCAGCTGCGAGCAACAGTATGGTG
ATCAGAACACTGGGTAATCCAAGCCAACCCACATTACTTGCTAACGGCGGATAATCGTATTTCTT
GGAGGTACTAAATACAACTCCATGAATGGGCGAAATGAAAGTTGCGTTAATGGGAAAGATCTCTG
GGAAAACCGCTGGAAAAGGATTGAACATGTGAAGGAAGGTCGGGGATTCGGAGGAATTCTTATTT
CATCTCCCGATCGGTTGTTGCGGCGCAGCACTACCACTACACTAA
Right flanking sequence: Indices 155173 -- 155672
AAGCAAAGCAGCGGGGAAGGAAGGGGCATTGGACCCCGCTTTGTTGCAGCGTCTTCTCGCAGTCC
GCGAGCACATCTACTGCATAACATATGCTACTACATATGCTACTACATATGCCACTACATATGCT
CTTTCTTGAACCACATGCAGTGGAGAGGCGGACGCTGCCTGGCCTGGCCTGACCTACAATTAATG
GGCATGGGCATGGGCATGGGCATGGGCATGGGCTTTCCGGTTTCCCAGTTCGTCCATTCTTGTCT
TGAAGCACGGACTCCTTTCGCCTAAGGAGTCTACGCTTCAGTCTGGGCTTCGGGTTCGAATAACG
TAGTACCATTAGTAAGCGGGTATCACGATCTATAGAGAGGGGGGCCGCCTCCAGCATCTCGAGAA
GTTTCTCGTCGGTTCCCGCTCCGATCTGACATGAATAACGAAACTCGATTGATCTCTCCGAACAC
AACCACCTAACCCACGGGATCAACTCGAGGGGCCGAGGGCCCCGG
Found at i:155295 original size:15 final size:12
Alignment explanation
Indices: 155258--155302 Score: 81
Period size: 12 Copynumber: 3.8 Consensus size: 12
155248 CTACTGCATA
155258 ACATATGCTACT
1 ACATATGCTACT
155270 ACATATGCTACT
1 ACATATGCTACT
*
155282 ACATATGCCACT
1 ACATATGCTACT
155294 ACATATGCT
1 ACATATGCT
155303 CTTTCTTGAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 31 1.00
ACGTcount: A:0.33, C:0.27, G:0.09, T:0.31
Consensus pattern (12 bp):
ACATATGCTACT
Left flanking sequence: Indices 154758 -- 155257
AGCACATCAGGATGGTACCAGCCGTACTTAATAGAAGAAAGATTTGGCGGTAATATGTAAAATCG
TCTTTCCTAAAGAAATTATTCCAGAAGAAATGGGCGATAGTTAGGAGAGGTGCGCCAGCTGCGAG
CAACAGTATGGTGATCAGAACACTGGGTAATCCAAGCCAACCCACATTACTTGCTAACGGCGGAT
AATCGTATTTCTTGGAGGTACTAAATACAACTCCATGAATGGGCGAAATGAAAGTTGCGTTAATG
GGAAAGATCTCTGGGAAAACCGCTGGAAAAGGATTGAACATGTGAAGGAAGGTCGGGGATTCGGA
GGAATTCTTATTTCATCTCCCGATCGGTTGTTGCGGCGCAGCACTACCACTACACTAAGTTACTG
AACTGAAGCGTTACTGAACCGAAGCAAGCAAAGCAGCGGGGAAGGAAGGGGCATTGGACCCCGCT
TTGTTGCAGCGTCTTCTCGCAGTCCGCGAGCACATCTACTGCATA
Right flanking sequence: Indices 155303 -- 155802
CTTTCTTGAACCACATGCAGTGGAGAGGCGGACGCTGCCTGGCCTGGCCTGACCTACAATTAATG
GGCATGGGCATGGGCATGGGCATGGGCATGGGCTTTCCGGTTTCCCAGTTCGTCCATTCTTGTCT
TGAAGCACGGACTCCTTTCGCCTAAGGAGTCTACGCTTCAGTCTGGGCTTCGGGTTCGAATAACG
TAGTACCATTAGTAAGCGGGTATCACGATCTATAGAGAGGGGGGCCGCCTCCAGCATCTCGAGAA
GTTTCTCGTCGGTTCCCGCTCCGATCTGACATGAATAACGAAACTCGATTGATCTCTCCGAACAC
AACCACCTAACCCACGGGATCAACTCGAGGGGCCGAGGGCCCCGGGTCCTCGACCCCCTATCGAG
AGTTCGGGGTCGAGCCCAGGGCCCTCTCCCGACGAAGGTCAGTCATTTATGCGCCCCTATCTATC
TAGATATAGGCGCCCGCCTCTCTTTATGCGCCCCTATCTATCTAG
Found at i:155376 original size:6 final size:6
Alignment explanation
Indices: 155365--155400 Score: 72
Period size: 6 Copynumber: 6.0 Consensus size: 6
155355 CCTACAATTA
155365 ATGGGC ATGGGC ATGGGC ATGGGC ATGGGC ATGGGC
1 ATGGGC ATGGGC ATGGGC ATGGGC ATGGGC ATGGGC
155401 TTTCCGGTTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 30 1.00
ACGTcount: A:0.17, C:0.17, G:0.50, T:0.17
Consensus pattern (6 bp):
ATGGGC
Left flanking sequence: Indices 154865 -- 155364
AGGAGAGGTGCGCCAGCTGCGAGCAACAGTATGGTGATCAGAACACTGGGTAATCCAAGCCAACC
CACATTACTTGCTAACGGCGGATAATCGTATTTCTTGGAGGTACTAAATACAACTCCATGAATGG
GCGAAATGAAAGTTGCGTTAATGGGAAAGATCTCTGGGAAAACCGCTGGAAAAGGATTGAACATG
TGAAGGAAGGTCGGGGATTCGGAGGAATTCTTATTTCATCTCCCGATCGGTTGTTGCGGCGCAGC
ACTACCACTACACTAAGTTACTGAACTGAAGCGTTACTGAACCGAAGCAAGCAAAGCAGCGGGGA
AGGAAGGGGCATTGGACCCCGCTTTGTTGCAGCGTCTTCTCGCAGTCCGCGAGCACATCTACTGC
ATAACATATGCTACTACATATGCTACTACATATGCCACTACATATGCTCTTTCTTGAACCACATG
CAGTGGAGAGGCGGACGCTGCCTGGCCTGGCCTGACCTACAATTA
Right flanking sequence: Indices 155401 -- 155900
TTTCCGGTTTCCCAGTTCGTCCATTCTTGTCTTGAAGCACGGACTCCTTTCGCCTAAGGAGTCTA
CGCTTCAGTCTGGGCTTCGGGTTCGAATAACGTAGTACCATTAGTAAGCGGGTATCACGATCTAT
AGAGAGGGGGGCCGCCTCCAGCATCTCGAGAAGTTTCTCGTCGGTTCCCGCTCCGATCTGACATG
AATAACGAAACTCGATTGATCTCTCCGAACACAACCACCTAACCCACGGGATCAACTCGAGGGGC
CGAGGGCCCCGGGTCCTCGACCCCCTATCGAGAGTTCGGGGTCGAGCCCAGGGCCCTCTCCCGAC
GAAGGTCAGTCATTTATGCGCCCCTATCTATCTAGATATAGGCGCCCGCCTCTCTTTATGCGCCC
CTATCTATCTAGATATAGGCGCCCGCCTCCCCTATAGATCTCTGGGGGTGGGGTTGGGGCCAGGG
GGCAGCTAAGCTAGATAGAGTTGGCACTCCCCCGCCCTATCGGGA
Found at i:155797 original size:42 final size:42
Alignment explanation
Indices: 155738--155819 Score: 164
Period size: 42 Copynumber: 2.0 Consensus size: 42
155728 AGGTCAGTCA
155738 TTTATGCGCCCCTATCTATCTAGATATAGGCGCCCGCCTCTC
1 TTTATGCGCCCCTATCTATCTAGATATAGGCGCCCGCCTCTC
155780 TTTATGCGCCCCTATCTATCTAGATATAGGCGCCCGCCTC
1 TTTATGCGCCCCTATCTATCTAGATATAGGCGCCCGCCTC
155820 CCCTATAGAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.17, C:0.35, G:0.17, T:0.30
Consensus pattern (42 bp):
TTTATGCGCCCCTATCTATCTAGATATAGGCGCCCGCCTCTC
Left flanking sequence: Indices 155238 -- 155737
GCGAGCACATCTACTGCATAACATATGCTACTACATATGCTACTACATATGCCACTACATATGCT
CTTTCTTGAACCACATGCAGTGGAGAGGCGGACGCTGCCTGGCCTGGCCTGACCTACAATTAATG
GGCATGGGCATGGGCATGGGCATGGGCATGGGCTTTCCGGTTTCCCAGTTCGTCCATTCTTGTCT
TGAAGCACGGACTCCTTTCGCCTAAGGAGTCTACGCTTCAGTCTGGGCTTCGGGTTCGAATAACG
TAGTACCATTAGTAAGCGGGTATCACGATCTATAGAGAGGGGGGCCGCCTCCAGCATCTCGAGAA
GTTTCTCGTCGGTTCCCGCTCCGATCTGACATGAATAACGAAACTCGATTGATCTCTCCGAACAC
AACCACCTAACCCACGGGATCAACTCGAGGGGCCGAGGGCCCCGGGTCCTCGACCCCCTATCGAG
AGTTCGGGGTCGAGCCCAGGGCCCTCTCCCGACGAAGGTCAGTCA
Right flanking sequence: Indices 155820 -- 156319
CCCTATAGATCTCTGGGGGTGGGGTTGGGGCCAGGGGGCAGCTAAGCTAGATAGAGTTGGCACTC
CCCCGCCCTATCGGGACCCCTATAGATCTCTATAGGCGCCCGCCCACCCCGGGCCCATATAGATC
TATAGAGAGGGGAGGGGGGGGGGGTTGGGGCCCTATCTAGATATGGGTATGCGCTCGACCCCCCT
CTCTCTATATGGCGGATAGGGGGGGGCCATCTGTATAGGGGTCATTGACTGATCGTCGAGGTCAT
TTAGAAAGGTCGAGGAGGGGGAGGCCCCATATAGAGAGAGGGGGGCCCCTATATCTATATGGGCC
AACGGGAGAGAGCTGAATTCTCCCATATCGTCATAGGGGGACCGCCCGCCCAGATCCCAGGTCTC
TCTAGATTGGAGATTGGATGGGGTTGGGGGGGCCGAGTAGGGGGAGGGTCCCTTTCTCTCTCTAT
ATGGCGATAGCCATACCATAGAGTTCTCTAGGGGGAGGAACCCTA
Found at i:157815 original size:37 final size:35
Alignment explanation
Indices: 157774--157843 Score: 97
Period size: 37 Copynumber: 1.9 Consensus size: 35
157764 CCGGGCCCCC
157774 AGAGAGATA-AGATCTATAGGGGCCCAGATATCTATGA
1 AGAGAGATATAGATCTATA-GGGCCC--ATATCTATGA
*
157811 AGAGATATATAGATCTATAGGGCCCATATCTAT
1 AGAGAGATATAGATCTATAGGGCCCATATCTAT
157844 ATAGCCCCCG
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
35 8 0.26
37 14 0.45
38 9 0.29
ACGTcount: A:0.37, C:0.14, G:0.23, T:0.26
Consensus pattern (35 bp):
AGAGAGATATAGATCTATAGGGCCCATATCTATGA
Left flanking sequence: Indices 157274 -- 157773
TAGGCATAGGTGGTTGGTCTCGGTCTCGGTCTCTATCCGGGGGCCCGGGCCTTTCTATATAGATG
GGCCCTATCTATATATGGGGACTCTCCGAAAACGTTGGTCGAGCGGGGGAGGCCCCCGGATAAAT
AAGATAAGATAGTTCAGGGAGGGGGGGCTCCTCTCCCTCGATCGATCGAGTGCTCTCCCCATCGG
GGGTCGAGCCCTATCGGTCGAGGGCCTAAAGGTTGGTCCACTGACTATGGAACCGACCCAAGCCA
ATTTCCCCATGTGTTGAATCTCACAAGTCGATGCCCATATGACGAACCTACCCATTCCGAGGGGA
ACAACAACGGCTGAGATAAGTTCCGTTGCCATATAGAGATATAGGGACCCTCCCCCTCCTCGACC
CCCCCCCCAATCAGATAATAGGTGGGCGCCCCCCCTCTATATCTTATCTATCTGGGGGGCCTACC
CCATACCTAGATAGGGCCCATCTATATAGAAAGGCCCGGGCCCCC
Right flanking sequence: Indices 157844 -- 158343
ATAGCCCCCGGGGATATCTAGATATGGCTCTATTACCAGGGGTTCAGAATTGGGGGGGAGGGCAC
CCTATATATCTATACTATATGGCCCTATAGAGATCTCCTACTCTACTCTATTCTCGACCAGCGGA
GCAGCATCTATATAGATAGTGGGGCCCAAGCCTAAGCCTATATCTAGTGGGGAGTATATCTATAT
ATGGGGAGCCCGAGTTGGGGCCCATCCATCTATATATCTGGAGGGAATGCCCTTTGTCTTTTCCG
GTAGTCCCCCGAGAGAGATAAATCCTTCCGGTGGCCCTATCTATATGGAATATAGAACCTTGGCC
TCCCTATCTCACCCCATCTATGTCGTTAGGTTTGATTGAAGGCTGAATTGAAGGCTAGTCCCTCT
ATAACCACGCCCAACTAAGGCTAGCTAACACAACCCAGCCTATCTACATATGGGGCTAGAGATTC
GTTCGGATTGGTCTGGTAGCCCAACCGGCTGGTCCAACCAACTAC
Found at i:158571 original size:12 final size:12
Alignment explanation
Indices: 158554--158672 Score: 59
Period size: 12 Copynumber: 10.1 Consensus size: 12
158544 CTCTCAGATA
158554 TATATCTCTCTC
1 TATATCTCTCTC
*
158566 TATATCTCTATC
1 TATATCTCTCTC
**
158578 TGCACTCTCTCTC
1 TATA-TCTCTCTC
**
158591 TATATCTC-GAC
1 TATATCTCTCTC
* * *
158602 TATCTCACTCTG
1 TATATCTCTCTC
* *
158614 AAGTCTCTTCTCTC
1 TA-TATC-TCTCTC
*
158628 TCTATCTCTCTC
1 TATATCTCTCTC
*
158640 TCTA--TCTCTC
1 TATATCTCTCTC
158650 --TATCTCTCTC
1 TATATCTCTCTC
*
158660 TATATCTCACTC
1 TATATCTCTCTC
158672 T
1 T
158673 TCACTCTGAA
Statistics
Matches: 79, Mismatches: 20, Indels: 16
0.69 0.17 0.14
Matches are distributed among these distances:
8 2 0.03
10 12 0.15
11 7 0.09
12 38 0.48
13 16 0.20
14 4 0.05
ACGTcount: A:0.16, C:0.35, G:0.03, T:0.45
Consensus pattern (12 bp):
TATATCTCTCTC
Left flanking sequence: Indices 158054 -- 158553
TGGGGCCCATCCATCTATATATCTGGAGGGAATGCCCTTTGTCTTTTCCGGTAGTCCCCCGAGAG
AGATAAATCCTTCCGGTGGCCCTATCTATATGGAATATAGAACCTTGGCCTCCCTATCTCACCCC
ATCTATGTCGTTAGGTTTGATTGAAGGCTGAATTGAAGGCTAGTCCCTCTATAACCACGCCCAAC
TAAGGCTAGCTAACACAACCCAGCCTATCTACATATGGGGCTAGAGATTCGTTCGGATTGGTCTG
GTAGCCCAACCGGCTGGTCCAACCAACTACTGGTCTGGTAGCCCAACCGGCTAGTCGAATATCAG
CAACTCTGCTACAACTAGTCGAAGGTAGAGTCGTTTGGGAGTAAGGCTAGTCGGCTAAATTGGCC
TTCTGGCCGCCTCGCCCGGGCCTATATAGATAATGCCAATGTGGTATTATCTATATAGGGGGTCC
CCATATCTCTATCTGAATGAGACTATCTGAAATCTCTCTCAGATA
Right flanking sequence: Indices 158673 -- 159172
TCACTCTGAATGAGACTATAGGGGGGCCCAGTTCTCGCGGCCACCGGCCATATATATAGATCTGG
CCCCCAGATATAGATAGGGCGCCCATAGAAGATATAGAGAGAGGGGGGAGGGGGGGGGGGGGGCA
CCTACCTATTGATTGGGAGAGGACGAGGACATTTATGCGCCCCTATCTGCCCCCAGATAGAGTAT
CTGGGGGAGAGAGGGGGGCCCCCTCTATCTATATGAGATTGGTCGAGGACCTGGTACATTGATTG
GTCGAGGACCTATTGATTGGTGATTGGGAGAGGGAGAGGTCATCGCTCAACCAACTACAGAAGGG
AGAGGTCTTACTTGGCTCCATTCATCCGGCCTCAGTTCTCTATATAGGGGAGGGGGTCATCGTCC
CTCTCCCAGCGCCCTCGACTGGGGAGATGGATACTAAGCGGGTAAGGGGTAAGCCCTGAACTCTA
TATCCCGCCCTATCTAATCTATATATATGGCTGAGCTGAGCTTAT
Found at i:158629 original size:2 final size:2
Alignment explanation
Indices: 158617--158660 Score: 54
Period size: 2 Copynumber: 22.5 Consensus size: 2
158607 CACTCTGAAG
* * *
158617 TC TC T- TC TC TC TC TA TC TC TC TC TC TA TC TC TC TA TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
158658 TC T
1 TC T
158661 ATATCTCACT
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
1 1 0.03
2 34 0.97
ACGTcount: A:0.07, C:0.41, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Left flanking sequence: Indices 158117 -- 158616
AGAGATAAATCCTTCCGGTGGCCCTATCTATATGGAATATAGAACCTTGGCCTCCCTATCTCACC
CCATCTATGTCGTTAGGTTTGATTGAAGGCTGAATTGAAGGCTAGTCCCTCTATAACCACGCCCA
ACTAAGGCTAGCTAACACAACCCAGCCTATCTACATATGGGGCTAGAGATTCGTTCGGATTGGTC
TGGTAGCCCAACCGGCTGGTCCAACCAACTACTGGTCTGGTAGCCCAACCGGCTAGTCGAATATC
AGCAACTCTGCTACAACTAGTCGAAGGTAGAGTCGTTTGGGAGTAAGGCTAGTCGGCTAAATTGG
CCTTCTGGCCGCCTCGCCCGGGCCTATATAGATAATGCCAATGTGGTATTATCTATATAGGGGGT
CCCCATATCTCTATCTGAATGAGACTATCTGAAATCTCTCTCAGATATATATCTCTCTCTATATC
TCTATCTGCACTCTCTCTCTATATCTCGACTATCTCACTCTGAAG
Right flanking sequence: Indices 158661 -- 159160
ATATCTCACTCTTCACTCTGAATGAGACTATAGGGGGGCCCAGTTCTCGCGGCCACCGGCCATAT
ATATAGATCTGGCCCCCAGATATAGATAGGGCGCCCATAGAAGATATAGAGAGAGGGGGGAGGGG
GGGGGGGGGGCACCTACCTATTGATTGGGAGAGGACGAGGACATTTATGCGCCCCTATCTGCCCC
CAGATAGAGTATCTGGGGGAGAGAGGGGGGCCCCCTCTATCTATATGAGATTGGTCGAGGACCTG
GTACATTGATTGGTCGAGGACCTATTGATTGGTGATTGGGAGAGGGAGAGGTCATCGCTCAACCA
ACTACAGAAGGGAGAGGTCTTACTTGGCTCCATTCATCCGGCCTCAGTTCTCTATATAGGGGAGG
GGGTCATCGTCCCTCTCCCAGCGCCCTCGACTGGGGAGATGGATACTAAGCGGGTAAGGGGTAAG
CCCTGAACTCTATATCCCGCCCTATCTAATCTATATATATGGCTG
Found at i:158637 original size:10 final size:10
Alignment explanation
Indices: 158617--158667 Score: 68
Period size: 10 Copynumber: 5.2 Consensus size: 10
158607 CACTCTGAAG
158617 TCTCT-TCTC
1 TCTCTATCTC
158626 TCTCTATCTC
1 TCTCTATCTC
* *
158636 TCTCTCTATC
1 TCTCTATCTC
158646 TCTCTATCTC
1 TCTCTATCTC
*
158656 TCTCTATATC
1 TCTCTATCTC
158666 TC
1 TC
158668 ACTCTTCACT
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
9 5 0.14
10 31 0.86
ACGTcount: A:0.10, C:0.39, G:0.00, T:0.51
Consensus pattern (10 bp):
TCTCTATCTC
Left flanking sequence: Indices 158117 -- 158616
AGAGATAAATCCTTCCGGTGGCCCTATCTATATGGAATATAGAACCTTGGCCTCCCTATCTCACC
CCATCTATGTCGTTAGGTTTGATTGAAGGCTGAATTGAAGGCTAGTCCCTCTATAACCACGCCCA
ACTAAGGCTAGCTAACACAACCCAGCCTATCTACATATGGGGCTAGAGATTCGTTCGGATTGGTC
TGGTAGCCCAACCGGCTGGTCCAACCAACTACTGGTCTGGTAGCCCAACCGGCTAGTCGAATATC
AGCAACTCTGCTACAACTAGTCGAAGGTAGAGTCGTTTGGGAGTAAGGCTAGTCGGCTAAATTGG
CCTTCTGGCCGCCTCGCCCGGGCCTATATAGATAATGCCAATGTGGTATTATCTATATAGGGGGT
CCCCATATCTCTATCTGAATGAGACTATCTGAAATCTCTCTCAGATATATATCTCTCTCTATATC
TCTATCTGCACTCTCTCTCTATATCTCGACTATCTCACTCTGAAG
Right flanking sequence: Indices 158668 -- 159167
ACTCTTCACTCTGAATGAGACTATAGGGGGGCCCAGTTCTCGCGGCCACCGGCCATATATATAGA
TCTGGCCCCCAGATATAGATAGGGCGCCCATAGAAGATATAGAGAGAGGGGGGAGGGGGGGGGGG
GGGCACCTACCTATTGATTGGGAGAGGACGAGGACATTTATGCGCCCCTATCTGCCCCCAGATAG
AGTATCTGGGGGAGAGAGGGGGGCCCCCTCTATCTATATGAGATTGGTCGAGGACCTGGTACATT
GATTGGTCGAGGACCTATTGATTGGTGATTGGGAGAGGGAGAGGTCATCGCTCAACCAACTACAG
AAGGGAGAGGTCTTACTTGGCTCCATTCATCCGGCCTCAGTTCTCTATATAGGGGAGGGGGTCAT
CGTCCCTCTCCCAGCGCCCTCGACTGGGGAGATGGATACTAAGCGGGTAAGGGGTAAGCCCTGAA
CTCTATATCCCGCCCTATCTAATCTATATATATGGCTGAGCTGAG
Found at i:158649 original size:20 final size:20
Alignment explanation
Indices: 158624--158667 Score: 79
Period size: 20 Copynumber: 2.2 Consensus size: 20
158614 AAGTCTCTTC
*
158624 TCTCTCTATCTCTCTCTCTA
1 TCTCTCTATCTCTCTCTATA
158644 TCTCTCTATCTCTCTCTATA
1 TCTCTCTATCTCTCTCTATA
158664 TCTC
1 TCTC
158668 ACTCTTCACT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.11, C:0.39, G:0.00, T:0.50
Consensus pattern (20 bp):
TCTCTCTATCTCTCTCTATA
Left flanking sequence: Indices 158124 -- 158623
AATCCTTCCGGTGGCCCTATCTATATGGAATATAGAACCTTGGCCTCCCTATCTCACCCCATCTA
TGTCGTTAGGTTTGATTGAAGGCTGAATTGAAGGCTAGTCCCTCTATAACCACGCCCAACTAAGG
CTAGCTAACACAACCCAGCCTATCTACATATGGGGCTAGAGATTCGTTCGGATTGGTCTGGTAGC
CCAACCGGCTGGTCCAACCAACTACTGGTCTGGTAGCCCAACCGGCTAGTCGAATATCAGCAACT
CTGCTACAACTAGTCGAAGGTAGAGTCGTTTGGGAGTAAGGCTAGTCGGCTAAATTGGCCTTCTG
GCCGCCTCGCCCGGGCCTATATAGATAATGCCAATGTGGTATTATCTATATAGGGGGTCCCCATA
TCTCTATCTGAATGAGACTATCTGAAATCTCTCTCAGATATATATCTCTCTCTATATCTCTATCT
GCACTCTCTCTCTATATCTCGACTATCTCACTCTGAAGTCTCTTC
Right flanking sequence: Indices 158668 -- 159167
ACTCTTCACTCTGAATGAGACTATAGGGGGGCCCAGTTCTCGCGGCCACCGGCCATATATATAGA
TCTGGCCCCCAGATATAGATAGGGCGCCCATAGAAGATATAGAGAGAGGGGGGAGGGGGGGGGGG
GGGCACCTACCTATTGATTGGGAGAGGACGAGGACATTTATGCGCCCCTATCTGCCCCCAGATAG
AGTATCTGGGGGAGAGAGGGGGGCCCCCTCTATCTATATGAGATTGGTCGAGGACCTGGTACATT
GATTGGTCGAGGACCTATTGATTGGTGATTGGGAGAGGGAGAGGTCATCGCTCAACCAACTACAG
AAGGGAGAGGTCTTACTTGGCTCCATTCATCCGGCCTCAGTTCTCTATATAGGGGAGGGGGTCAT
CGTCCCTCTCCCAGCGCCCTCGACTGGGGAGATGGATACTAAGCGGGTAAGGGGTAAGCCCTGAA
CTCTATATCCCGCCCTATCTAATCTATATATATGGCTGAGCTGAG
Found at i:159452 original size:25 final size:26
Alignment explanation
Indices: 159405--159454 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
159395 TACTCTATCC
*
159405 GTATGGCATCCCATCACTTCACTATA
1 GTATGGCATCACATCACTTCACTATA
159431 GTATGGCATCAC-TCACTTCACTAT
1 GTATGGCATCACATCACTTCACTAT
159455 TCACTGAGGT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 12 0.52
26 11 0.48
ACGTcount: A:0.26, C:0.30, G:0.12, T:0.32
Consensus pattern (26 bp):
GTATGGCATCACATCACTTCACTATA
Left flanking sequence: Indices 158905 -- 159404
ATTGGTCGAGGACCTGGTACATTGATTGGTCGAGGACCTATTGATTGGTGATTGGGAGAGGGAGA
GGTCATCGCTCAACCAACTACAGAAGGGAGAGGTCTTACTTGGCTCCATTCATCCGGCCTCAGTT
CTCTATATAGGGGAGGGGGTCATCGTCCCTCTCCCAGCGCCCTCGACTGGGGAGATGGATACTAA
GCGGGTAAGGGGTAAGCCCTGAACTCTATATCCCGCCCTATCTAATCTATATATATGGCTGAGCT
GAGCTTATGAAGTTGTTCGGGGACTGCCCCCACCCCCTATATAGATTATAGATGGGCGCCCTATC
TAATCTATATATGGGGGGAGTCGGCCCTCCATAGAGAAGATCTATAGGGAGGGGGGGGGCAGTCG
AGTGCCTATGCCTATATATAGCCGCCCTCCCCTCTCTCCCATATCTCTATAGAGGGGGGGGGGGG
GGAGATGGTAGCCGAGGAGGGGCCTGAATGGACTATACTCTATCC
Right flanking sequence: Indices 159455 -- 159954
TCACTGAGGTCCCCGGATGCATGATTGAAGTGCGCCGGATTGATCGAAGTGCACCGGATCGATCG
AAGCGCATATATCCATACCCGGACGGGCCCCCAGAGATATGGCCGACTCCAGCATAAAGGCAAGG
CCCCCGGCTGGGCGCGATAGTGAGAGCGCATAGTCCCGGTCCGCGCACCGACGGCCTACTATACT
ATAGAGTATAGAACCGCCCCCTATCTATACTCATCTAGGGGGGGTGGGGGCTCCCCTAGAGTTCT
CTATATGGCGCCCGCCCGCCATTGAAGTTGGTGATCGGTGACCCACCATTGCGTGCCATTGATTG
GTGACCATTGAAGTGCCATTGATTGGTGACCATTGAAGTGCCATTCTTTCTCTATGTAACACCGG
TTACGTTCATCCGGCATCACTGACCGTATTACATACGTAGTACGACTGATGCTACGTCTACAATG
ATTTCTATAGTAAAGCCTTCCTCCCCCCCCCCGCTCTCTCTCCCC
Found at i:159503 original size:19 final size:19
Alignment explanation
Indices: 159476--159522 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
159466 CCCGGATGCA
* *
159476 TGATTGAAGTGCGCCGGAT
1 TGATCGAAGTGCACCGGAT
159495 TGATCGAAGTGCACCGGAT
1 TGATCGAAGTGCACCGGAT
*
159514 CGATCGAAG
1 TGATCGAAG
159523 CGCATATATC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.34, T:0.21
Consensus pattern (19 bp):
TGATCGAAGTGCACCGGAT
Left flanking sequence: Indices 158976 -- 159475
CGCTCAACCAACTACAGAAGGGAGAGGTCTTACTTGGCTCCATTCATCCGGCCTCAGTTCTCTAT
ATAGGGGAGGGGGTCATCGTCCCTCTCCCAGCGCCCTCGACTGGGGAGATGGATACTAAGCGGGT
AAGGGGTAAGCCCTGAACTCTATATCCCGCCCTATCTAATCTATATATATGGCTGAGCTGAGCTT
ATGAAGTTGTTCGGGGACTGCCCCCACCCCCTATATAGATTATAGATGGGCGCCCTATCTAATCT
ATATATGGGGGGAGTCGGCCCTCCATAGAGAAGATCTATAGGGAGGGGGGGGGCAGTCGAGTGCC
TATGCCTATATATAGCCGCCCTCCCCTCTCTCCCATATCTCTATAGAGGGGGGGGGGGGGGAGAT
GGTAGCCGAGGAGGGGCCTGAATGGACTATACTCTATCCGTATGGCATCCCATCACTTCACTATA
GTATGGCATCACTCACTTCACTATTCACTGAGGTCCCCGGATGCA
Right flanking sequence: Indices 159523 -- 160022
CGCATATATCCATACCCGGACGGGCCCCCAGAGATATGGCCGACTCCAGCATAAAGGCAAGGCCC
CCGGCTGGGCGCGATAGTGAGAGCGCATAGTCCCGGTCCGCGCACCGACGGCCTACTATACTATA
GAGTATAGAACCGCCCCCTATCTATACTCATCTAGGGGGGGTGGGGGCTCCCCTAGAGTTCTCTA
TATGGCGCCCGCCCGCCATTGAAGTTGGTGATCGGTGACCCACCATTGCGTGCCATTGATTGGTG
ACCATTGAAGTGCCATTGATTGGTGACCATTGAAGTGCCATTCTTTCTCTATGTAACACCGGTTA
CGTTCATCCGGCATCACTGACCGTATTACATACGTAGTACGACTGATGCTACGTCTACAATGATT
TCTATAGTAAAGCCTTCCTCCCCCCCCCCGCTCTCTCTCCCCAGGACCTTCATGAACCGGGTGAA
CCAGGGCCCGACCTACTCTATAGCGAGGCCAGGGTTTCTGTCTGG
Found at i:159787 original size:14 final size:14
Alignment explanation
Indices: 159770--159815 Score: 62
Period size: 14 Copynumber: 3.5 Consensus size: 14
159760 CCATTGCGTG
159770 CCATTGATTGGTGA
1 CCATTGATTGGTGA
*
159784 CCATTGA--AGTG-
1 CCATTGATTGGTGA
159795 CCATTGATTGGTGA
1 CCATTGATTGGTGA
159809 CCATTGA
1 CCATTGA
159816 AGTGCCATTC
Statistics
Matches: 27, Mismatches: 2, Indels: 6
0.77 0.06 0.17
Matches are distributed among these distances:
11 7 0.26
12 3 0.11
13 3 0.11
14 14 0.52
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.33
Consensus pattern (14 bp):
CCATTGATTGGTGA
Left flanking sequence: Indices 159270 -- 159769
TCTATAGGGAGGGGGGGGGCAGTCGAGTGCCTATGCCTATATATAGCCGCCCTCCCCTCTCTCCC
ATATCTCTATAGAGGGGGGGGGGGGGGAGATGGTAGCCGAGGAGGGGCCTGAATGGACTATACTC
TATCCGTATGGCATCCCATCACTTCACTATAGTATGGCATCACTCACTTCACTATTCACTGAGGT
CCCCGGATGCATGATTGAAGTGCGCCGGATTGATCGAAGTGCACCGGATCGATCGAAGCGCATAT
ATCCATACCCGGACGGGCCCCCAGAGATATGGCCGACTCCAGCATAAAGGCAAGGCCCCCGGCTG
GGCGCGATAGTGAGAGCGCATAGTCCCGGTCCGCGCACCGACGGCCTACTATACTATAGAGTATA
GAACCGCCCCCTATCTATACTCATCTAGGGGGGGTGGGGGCTCCCCTAGAGTTCTCTATATGGCG
CCCGCCCGCCATTGAAGTTGGTGATCGGTGACCCACCATTGCGTG
Right flanking sequence: Indices 159816 -- 160315
AGTGCCATTCTTTCTCTATGTAACACCGGTTACGTTCATCCGGCATCACTGACCGTATTACATAC
GTAGTACGACTGATGCTACGTCTACAATGATTTCTATAGTAAAGCCTTCCTCCCCCCCCCCGCTC
TCTCTCCCCAGGACCTTCATGAACCGGGTGAACCAGGGCCCGACCTACTCTATAGCGAGGCCAGG
GTTTCTGTCTGGTCTGGTCTGTCTATGTCACCTATGGTTATGGCTCATGCCCGAGCGCCGCGCCA
TATATAGATATAGGGGCAAGCGAGGGCGGCTCTGTAATCGTAATCGAATATAAGGGCTTTCTTTA
TATGGCACGGGAACCGGGTGGACCAACCCCTCCGGGTCCCAACCTCCCCAAGCCTTTCTATGTTT
CCCAATCTTTGTCCCGGTGGCTCTCCGGTAGAGCGGCGGTCGAGCGCAGACCTATTCTACCTGCA
GAAACCCGGCCCGGTACTATATAGAGAATGGGGTGGGGCCCATCG
Found at i:159801 original size:25 final size:25
Alignment explanation
Indices: 159759--159824 Score: 116
Period size: 25 Copynumber: 2.7 Consensus size: 25
159749 TCGGTGACCC
*
159759 ACCATTG-CGTGCCATTGATTGGTG
1 ACCATTGAAGTGCCATTGATTGGTG
159783 ACCATTGAAGTGCCATTGATTGGTG
1 ACCATTGAAGTGCCATTGATTGGTG
159808 ACCATTGAAGTGCCATT
1 ACCATTGAAGTGCCATT
159825 CTTTCTCTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
24 7 0.17
25 33 0.82
ACGTcount: A:0.23, C:0.20, G:0.26, T:0.32
Consensus pattern (25 bp):
ACCATTGAAGTGCCATTGATTGGTG
Left flanking sequence: Indices 159259 -- 159758
CATAGAGAAGATCTATAGGGAGGGGGGGGGCAGTCGAGTGCCTATGCCTATATATAGCCGCCCTC
CCCTCTCTCCCATATCTCTATAGAGGGGGGGGGGGGGGAGATGGTAGCCGAGGAGGGGCCTGAAT
GGACTATACTCTATCCGTATGGCATCCCATCACTTCACTATAGTATGGCATCACTCACTTCACTA
TTCACTGAGGTCCCCGGATGCATGATTGAAGTGCGCCGGATTGATCGAAGTGCACCGGATCGATC
GAAGCGCATATATCCATACCCGGACGGGCCCCCAGAGATATGGCCGACTCCAGCATAAAGGCAAG
GCCCCCGGCTGGGCGCGATAGTGAGAGCGCATAGTCCCGGTCCGCGCACCGACGGCCTACTATAC
TATAGAGTATAGAACCGCCCCCTATCTATACTCATCTAGGGGGGGTGGGGGCTCCCCTAGAGTTC
TCTATATGGCGCCCGCCCGCCATTGAAGTTGGTGATCGGTGACCC
Right flanking sequence: Indices 159825 -- 160324
CTTTCTCTATGTAACACCGGTTACGTTCATCCGGCATCACTGACCGTATTACATACGTAGTACGA
CTGATGCTACGTCTACAATGATTTCTATAGTAAAGCCTTCCTCCCCCCCCCCGCTCTCTCTCCCC
AGGACCTTCATGAACCGGGTGAACCAGGGCCCGACCTACTCTATAGCGAGGCCAGGGTTTCTGTC
TGGTCTGGTCTGTCTATGTCACCTATGGTTATGGCTCATGCCCGAGCGCCGCGCCATATATAGAT
ATAGGGGCAAGCGAGGGCGGCTCTGTAATCGTAATCGAATATAAGGGCTTTCTTTATATGGCACG
GGAACCGGGTGGACCAACCCCTCCGGGTCCCAACCTCCCCAAGCCTTTCTATGTTTCCCAATCTT
TGTCCCGGTGGCTCTCCGGTAGAGCGGCGGTCGAGCGCAGACCTATTCTACCTGCAGAAACCCGG
CCCGGTACTATATAGAGAATGGGGTGGGGCCCATCGGGGGGGGCC
Found at i:160332 original size:13 final size:14
Alignment explanation
Indices: 160300--160363 Score: 112
Period size: 14 Copynumber: 4.6 Consensus size: 14
160290 TATAGAGAAT
160300 GGGGTGGGGCCCATC
1 GGGG-GGGGCCCATC
160315 GGGGGGGGCCCATC
1 GGGGGGGGCCCATC
160329 GGGGGGGGCCCATC
1 GGGGGGGGCCCATC
160343 -GGGGGGGCCCATC
1 GGGGGGGGCCCATC
160356 GGGGGGGG
1 GGGGGGGG
160364 GGGGGGACCG
Statistics
Matches: 48, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
13 13 0.27
14 31 0.65
15 4 0.08
ACGTcount: A:0.06, C:0.25, G:0.61, T:0.08
Consensus pattern (14 bp):
GGGGGGGGCCCATC
Left flanking sequence: Indices 159800 -- 160299
GATTGGTGACCATTGAAGTGCCATTCTTTCTCTATGTAACACCGGTTACGTTCATCCGGCATCAC
TGACCGTATTACATACGTAGTACGACTGATGCTACGTCTACAATGATTTCTATAGTAAAGCCTTC
CTCCCCCCCCCCGCTCTCTCTCCCCAGGACCTTCATGAACCGGGTGAACCAGGGCCCGACCTACT
CTATAGCGAGGCCAGGGTTTCTGTCTGGTCTGGTCTGTCTATGTCACCTATGGTTATGGCTCATG
CCCGAGCGCCGCGCCATATATAGATATAGGGGCAAGCGAGGGCGGCTCTGTAATCGTAATCGAAT
ATAAGGGCTTTCTTTATATGGCACGGGAACCGGGTGGACCAACCCCTCCGGGTCCCAACCTCCCC
AAGCCTTTCTATGTTTCCCAATCTTTGTCCCGGTGGCTCTCCGGTAGAGCGGCGGTCGAGCGCAG
ACCTATTCTACCTGCAGAAACCCGGCCCGGTACTATATAGAGAAT
Right flanking sequence: Indices 160364 -- 160863
GGGGGGACCGGTACTACCGTCAGCGTTCTACTGGCCTCCTGCATCCGAGGAATCCTGTAACCATT
CTGCTGTTACTAACCATTCCGCATCCGTATAGTAATATCAATCAGTAGTAATCCCATCTGTCTAG
TAATCCGATCAATCAGGCGCATACCTCTACCACGAACAGGTGAATGGGAACAGGAATACTAGATT
TAAGAATCGGAGGAGAAGAATAATGTGTGTGGATCGGAGGGGATCTGATGAATCGGCCTATCTAA
TCCATATATGGGGTGGGCCCCCCAGATCGGGCCCCTATATTGAATTGAGGGGAGGGAGGTCGGGG
CGGGGGAATCGAATCACGGGAATTGAATCGGCTCAGTGGTAGCGTAGGAAGAATCGGAATCGGCT
CAGTGGTAGGAACGGGAATTGAATCGGCTCAGTGGTAGCGTAGGAAGAATCGGAAGCGGGGGAAT
CTTAGGAATCGGCTCGCCTCGCGGGAATCGGAGCAATAACAACAA
Found at i:160341 original size:28 final size:27
Alignment explanation
Indices: 160300--160363 Score: 110
Period size: 27 Copynumber: 2.3 Consensus size: 27
160290 TATAGAGAAT
160300 GGGGTGGGGCCCATCGGGGGGGGCCCATC
1 GGGG-GGGGCCCATC-GGGGGGGCCCATC
160329 GGGGGGGGCCCATCGGGGGGGCCCATC
1 GGGGGGGGCCCATCGGGGGGGCCCATC
160356 GGGGGGGG
1 GGGGGGGG
160364 GGGGGGACCG
Statistics
Matches: 35, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
27 21 0.60
28 10 0.29
29 4 0.11
ACGTcount: A:0.06, C:0.25, G:0.61, T:0.08
Consensus pattern (27 bp):
GGGGGGGGCCCATCGGGGGGGCCCATC
Left flanking sequence: Indices 159800 -- 160299
GATTGGTGACCATTGAAGTGCCATTCTTTCTCTATGTAACACCGGTTACGTTCATCCGGCATCAC
TGACCGTATTACATACGTAGTACGACTGATGCTACGTCTACAATGATTTCTATAGTAAAGCCTTC
CTCCCCCCCCCCGCTCTCTCTCCCCAGGACCTTCATGAACCGGGTGAACCAGGGCCCGACCTACT
CTATAGCGAGGCCAGGGTTTCTGTCTGGTCTGGTCTGTCTATGTCACCTATGGTTATGGCTCATG
CCCGAGCGCCGCGCCATATATAGATATAGGGGCAAGCGAGGGCGGCTCTGTAATCGTAATCGAAT
ATAAGGGCTTTCTTTATATGGCACGGGAACCGGGTGGACCAACCCCTCCGGGTCCCAACCTCCCC
AAGCCTTTCTATGTTTCCCAATCTTTGTCCCGGTGGCTCTCCGGTAGAGCGGCGGTCGAGCGCAG
ACCTATTCTACCTGCAGAAACCCGGCCCGGTACTATATAGAGAAT
Right flanking sequence: Indices 160364 -- 160863
GGGGGGACCGGTACTACCGTCAGCGTTCTACTGGCCTCCTGCATCCGAGGAATCCTGTAACCATT
CTGCTGTTACTAACCATTCCGCATCCGTATAGTAATATCAATCAGTAGTAATCCCATCTGTCTAG
TAATCCGATCAATCAGGCGCATACCTCTACCACGAACAGGTGAATGGGAACAGGAATACTAGATT
TAAGAATCGGAGGAGAAGAATAATGTGTGTGGATCGGAGGGGATCTGATGAATCGGCCTATCTAA
TCCATATATGGGGTGGGCCCCCCAGATCGGGCCCCTATATTGAATTGAGGGGAGGGAGGTCGGGG
CGGGGGAATCGAATCACGGGAATTGAATCGGCTCAGTGGTAGCGTAGGAAGAATCGGAATCGGCT
CAGTGGTAGGAACGGGAATTGAATCGGCTCAGTGGTAGCGTAGGAAGAATCGGAAGCGGGGGAAT
CTTAGGAATCGGCTCGCCTCGCGGGAATCGGAGCAATAACAACAA
Found at i:160749 original size:32 final size:32
Alignment explanation
Indices: 160713--160808 Score: 137
Period size: 32 Copynumber: 3.1 Consensus size: 32
160703 CACGGGAATT
160713 GAATCGGCTCAGTGGTAGCGTAGGAAGAATCG
1 GAATCGGCTCAGTGGTAGCGTAGGAAGAATCG
* *
160745 GAATCGGCTCAGTGGTAG-GAACGG--GAAT-T
1 GAATCGGCTCAGTGGTAGCGTA-GGAAGAATCG
160774 GAATCGGCTCAGTGGTAGCGTAGGAAGAATCG
1 GAATCGGCTCAGTGGTAGCGTAGGAAGAATCG
160806 GAA
1 GAA
160809 GCGGGGGAAT
Statistics
Matches: 55, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
29 20 0.36
30 6 0.11
31 6 0.11
32 23 0.42
ACGTcount: A:0.29, C:0.15, G:0.38, T:0.19
Consensus pattern (32 bp):
GAATCGGCTCAGTGGTAGCGTAGGAAGAATCG
Left flanking sequence: Indices 160213 -- 160712
TTTGTCCCGGTGGCTCTCCGGTAGAGCGGCGGTCGAGCGCAGACCTATTCTACCTGCAGAAACCC
GGCCCGGTACTATATAGAGAATGGGGTGGGGCCCATCGGGGGGGGCCCATCGGGGGGGGCCCATC
GGGGGGGCCCATCGGGGGGGGGGGGGGACCGGTACTACCGTCAGCGTTCTACTGGCCTCCTGCAT
CCGAGGAATCCTGTAACCATTCTGCTGTTACTAACCATTCCGCATCCGTATAGTAATATCAATCA
GTAGTAATCCCATCTGTCTAGTAATCCGATCAATCAGGCGCATACCTCTACCACGAACAGGTGAA
TGGGAACAGGAATACTAGATTTAAGAATCGGAGGAGAAGAATAATGTGTGTGGATCGGAGGGGAT
CTGATGAATCGGCCTATCTAATCCATATATGGGGTGGGCCCCCCAGATCGGGCCCCTATATTGAA
TTGAGGGGAGGGAGGTCGGGGCGGGGGAATCGAATCACGGGAATT
Right flanking sequence: Indices 160809 -- 161308
GCGGGGGAATCTTAGGAATCGGCTCGCCTCGCGGGAATCGGAGCAATAACAACAAAGGGTAGCCC
CGCCGCCTGCTCCACCATGATGAACTAACAGCGCAGCACTACCGAACTCCGAACTAAGGCAATAT
ATAGAGATAGGGGGCACTACTGGACTCCTGGACTCTATTATATCTTATCTTAAAGATAAGATAAG
ATAAGATAAGATAAGATAAGATAAGATAAGATATATAGGGTGGGTCCTCGATCTATCGCCATCTA
TATATTTCTATTTAGGGTCGGGGGGATGGTGAACATCTATAGATAGGGGGGCTGCGGATTGATGA
TTTGATTTATGCGATTATGAACCGGAATTCGATTCCGATGCAACTTATCCTTCTGGAGCTGACGT
AACAAACTGCGCAAGCCTCCCGGGGGAGCCAACAGAAATCCTATCCGAATGCGAGGAATAAAAGG
CAGTTTCATCATGGTGGTATACCAGCCGCCTGTTTCGAAACCTCC
Found at i:160787 original size:29 final size:30
Alignment explanation
Indices: 160704--160793 Score: 121
Period size: 29 Copynumber: 3.0 Consensus size: 30
160694 GAATCGAATC
*
160704 ACGGGAATTGAATCGGCTCAGTGGTAGCGT
1 ACGGGAATTGAATCGGCTCAGTGGTAGCGA
*
160734 A-GGAAGAATCGGAATCGGCTCAGTGGTAG-GA
1 ACGG--GAAT-TGAATCGGCTCAGTGGTAGCGA
160765 ACGGGAATTGAATCGGCTCAGTGGTAGCG
1 ACGGGAATTGAATCGGCTCAGTGGTAGCG
160794 TAGGAAGAAT
Statistics
Matches: 52, Mismatches: 3, Indels: 10
0.80 0.05 0.15
Matches are distributed among these distances:
29 20 0.38
30 6 0.12
31 6 0.12
32 20 0.38
ACGTcount: A:0.27, C:0.16, G:0.38, T:0.20
Consensus pattern (30 bp):
ACGGGAATTGAATCGGCTCAGTGGTAGCGA
Left flanking sequence: Indices 160204 -- 160703
TTCCCAATCTTTGTCCCGGTGGCTCTCCGGTAGAGCGGCGGTCGAGCGCAGACCTATTCTACCTG
CAGAAACCCGGCCCGGTACTATATAGAGAATGGGGTGGGGCCCATCGGGGGGGGCCCATCGGGGG
GGGCCCATCGGGGGGGCCCATCGGGGGGGGGGGGGGACCGGTACTACCGTCAGCGTTCTACTGGC
CTCCTGCATCCGAGGAATCCTGTAACCATTCTGCTGTTACTAACCATTCCGCATCCGTATAGTAA
TATCAATCAGTAGTAATCCCATCTGTCTAGTAATCCGATCAATCAGGCGCATACCTCTACCACGA
ACAGGTGAATGGGAACAGGAATACTAGATTTAAGAATCGGAGGAGAAGAATAATGTGTGTGGATC
GGAGGGGATCTGATGAATCGGCCTATCTAATCCATATATGGGGTGGGCCCCCCAGATCGGGCCCC
TATATTGAATTGAGGGGAGGGAGGTCGGGGCGGGGGAATCGAATC
Right flanking sequence: Indices 160794 -- 161293
TAGGAAGAATCGGAAGCGGGGGAATCTTAGGAATCGGCTCGCCTCGCGGGAATCGGAGCAATAAC
AACAAAGGGTAGCCCCGCCGCCTGCTCCACCATGATGAACTAACAGCGCAGCACTACCGAACTCC
GAACTAAGGCAATATATAGAGATAGGGGGCACTACTGGACTCCTGGACTCTATTATATCTTATCT
TAAAGATAAGATAAGATAAGATAAGATAAGATAAGATAAGATAAGATATATAGGGTGGGTCCTCG
ATCTATCGCCATCTATATATTTCTATTTAGGGTCGGGGGGATGGTGAACATCTATAGATAGGGGG
GCTGCGGATTGATGATTTGATTTATGCGATTATGAACCGGAATTCGATTCCGATGCAACTTATCC
TTCTGGAGCTGACGTAACAAACTGCGCAAGCCTCCCGGGGGAGCCAACAGAAATCCTATCCGAAT
GCGAGGAATAAAAGGCAGTTTCATCATGGTGGTATACCAGCCGCC
Found at i:160825 original size:61 final size:61
Alignment explanation
Indices: 160704--160826 Score: 183
Period size: 61 Copynumber: 2.0 Consensus size: 61
160694 GAATCGAATC
* * * *
160704 ACGGGAATTGAATCGGCTCAGTGGTAGCGTAGGAAGAATCGGAATCGGCTCAGTGGTAGGA
1 ACGGGAATTGAATCGGCTCAGTGGTAGCGTAGGAAGAATCGGAAGCGGCGCAATCGTAGGA
* * *
160765 ACGGGAATTGAATCGGCTCAGTGGTAGCGTAGGAAGAATCGGAAGCGGGGGAATCTTAGGA
1 ACGGGAATTGAATCGGCTCAGTGGTAGCGTAGGAAGAATCGGAAGCGGCGCAATCGTAGGA
160826 A
1 A
160827 TCGGCTCGCC
Statistics
Matches: 55, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.29, C:0.14, G:0.38, T:0.19
Consensus pattern (61 bp):
ACGGGAATTGAATCGGCTCAGTGGTAGCGTAGGAAGAATCGGAAGCGGCGCAATCGTAGGA
Left flanking sequence: Indices 160204 -- 160703
TTCCCAATCTTTGTCCCGGTGGCTCTCCGGTAGAGCGGCGGTCGAGCGCAGACCTATTCTACCTG
CAGAAACCCGGCCCGGTACTATATAGAGAATGGGGTGGGGCCCATCGGGGGGGGCCCATCGGGGG
GGGCCCATCGGGGGGGCCCATCGGGGGGGGGGGGGGACCGGTACTACCGTCAGCGTTCTACTGGC
CTCCTGCATCCGAGGAATCCTGTAACCATTCTGCTGTTACTAACCATTCCGCATCCGTATAGTAA
TATCAATCAGTAGTAATCCCATCTGTCTAGTAATCCGATCAATCAGGCGCATACCTCTACCACGA
ACAGGTGAATGGGAACAGGAATACTAGATTTAAGAATCGGAGGAGAAGAATAATGTGTGTGGATC
GGAGGGGATCTGATGAATCGGCCTATCTAATCCATATATGGGGTGGGCCCCCCAGATCGGGCCCC
TATATTGAATTGAGGGGAGGGAGGTCGGGGCGGGGGAATCGAATC
Right flanking sequence: Indices 160827 -- 161326
TCGGCTCGCCTCGCGGGAATCGGAGCAATAACAACAAAGGGTAGCCCCGCCGCCTGCTCCACCAT
GATGAACTAACAGCGCAGCACTACCGAACTCCGAACTAAGGCAATATATAGAGATAGGGGGCACT
ACTGGACTCCTGGACTCTATTATATCTTATCTTAAAGATAAGATAAGATAAGATAAGATAAGATA
AGATAAGATAAGATATATAGGGTGGGTCCTCGATCTATCGCCATCTATATATTTCTATTTAGGGT
CGGGGGGATGGTGAACATCTATAGATAGGGGGGCTGCGGATTGATGATTTGATTTATGCGATTAT
GAACCGGAATTCGATTCCGATGCAACTTATCCTTCTGGAGCTGACGTAACAAACTGCGCAAGCCT
CCCGGGGGAGCCAACAGAAATCCTATCCGAATGCGAGGAATAAAAGGCAGTTTCATCATGGTGGT
ATACCAGCCGCCTGTTTCGAAACCTCCAGTTCCAATCGGAGCATA
Found at i:160999 original size:5 final size:5
Alignment explanation
Indices: 160991--161036 Score: 92
Period size: 5 Copynumber: 9.2 Consensus size: 5
160981 TCTTATCTTA
160991 AAGAT AAGAT AAGAT AAGAT AAGAT AAGAT AAGAT AAGAT AAGAT A
1 AAGAT AAGAT AAGAT AAGAT AAGAT AAGAT AAGAT AAGAT AAGAT A
161037 TATAGGGTGG
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
AAGAT
Left flanking sequence: Indices 160491 -- 160990
TAGTAATCCGATCAATCAGGCGCATACCTCTACCACGAACAGGTGAATGGGAACAGGAATACTAG
ATTTAAGAATCGGAGGAGAAGAATAATGTGTGTGGATCGGAGGGGATCTGATGAATCGGCCTATC
TAATCCATATATGGGGTGGGCCCCCCAGATCGGGCCCCTATATTGAATTGAGGGGAGGGAGGTCG
GGGCGGGGGAATCGAATCACGGGAATTGAATCGGCTCAGTGGTAGCGTAGGAAGAATCGGAATCG
GCTCAGTGGTAGGAACGGGAATTGAATCGGCTCAGTGGTAGCGTAGGAAGAATCGGAAGCGGGGG
AATCTTAGGAATCGGCTCGCCTCGCGGGAATCGGAGCAATAACAACAAAGGGTAGCCCCGCCGCC
TGCTCCACCATGATGAACTAACAGCGCAGCACTACCGAACTCCGAACTAAGGCAATATATAGAGA
TAGGGGGCACTACTGGACTCCTGGACTCTATTATATCTTATCTTA
Right flanking sequence: Indices 161037 -- 161536
TATAGGGTGGGTCCTCGATCTATCGCCATCTATATATTTCTATTTAGGGTCGGGGGGATGGTGAA
CATCTATAGATAGGGGGGCTGCGGATTGATGATTTGATTTATGCGATTATGAACCGGAATTCGAT
TCCGATGCAACTTATCCTTCTGGAGCTGACGTAACAAACTGCGCAAGCCTCCCGGGGGAGCCAAC
AGAAATCCTATCCGAATGCGAGGAATAAAAGGCAGTTTCATCATGGTGGTATACCAGCCGCCTGT
TTCGAAACCTCCAGTTCCAATCGGAGCATATGGATCCGTCAATGGATTTGTATGTATAGCCGCTT
TAGTTGTGCTCGTCGTTTCTCGAATGGAGAGAGAGTATCTCTTTTCCGGGAACATTGTCAACCAG
AAACTCTTATGTCCGCGATTCCCTATATATGGATAGGCCCACCACGATCTCATAGCATAAAATGA
TCCGGGATCCGGTTTTGGCAACATATCGATCATGGCACGAAGTGA
Found at i:162078 original size:8 final size:8
Alignment explanation
Indices: 162067--162095 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
162057 GTTGGTAATA
162067 GAAGAGGG
1 GAAGAGGG
162075 GAAGAGGG
1 GAAGAGGG
162083 GAAGAGGG
1 GAAGAGGG
162091 GAAGA
1 GAAGA
162096 AGGCGGCTCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.59, T:0.00
Consensus pattern (8 bp):
GAAGAGGG
Left flanking sequence: Indices 161567 -- 162066
GAGCGAACCCGGTTTCGGTTTATAGATCATCAAATTCCCACAAATGGAATGAAAAGTGGGTCCAT
GCAGAGAATCGAGACCCCGCAAGCAACAACGCTCCTTCCCCATATGGAGTTCGGAACCCAAAGGC
AATCGTTGAGTAAACTGTGTCTTTCTCGTGCTGGACAAGATAACACCTATAATGAAAATGCGAAC
TCCTCCATGCGAAAGATTCATATCCATTGGAGCTTTCCGGTAGCGATCGACGACCCCTACTCTAT
ATAGCTGGTGGTGGGGCCCAATCGCTAACCGCCCATTCGAGTATGGTAGGAGAAGGGTGCGGGAG
AATAGTAAACAGAGCACACCGCGGAAAGATTCTGGATATGACAAGTCTCCCATGAATCCGAGAAG
GAGGAAATGGAGAAGGAGAACGGAGCAAAATGATGCCCCATATAGAACTATAGATAGGGCTCTAG
TTTGGGAGCGAGATCTGTTTGGATCTGTTTGGTTGGTTGGTAATA
Right flanking sequence: Indices 162096 -- 162595
AGGCGGCTCGCTCCAACCAACACTCTACCGTCCATAGAGCGGAATCCCCTGGGGTGTAGATAGAC
TAGAGGGGGCAAGGGAGATGTGGGGATAGGGATTATAGTGCCACTGGAAGAAGGAACACCTGTGG
GAACATCTCTACCGACGAACCATTTCAATAGTACGGGTGCTGCCGTGCCACGAGGCACGACCATG
GAAATAATGGAAAAGAAGAAGTTCTGCGGTTGGACCATCTGCTCTATTCGTTCCGACCGACGAGT
CCAGATCGAATAGGCTCTAAATCGAAAGGTGGGCCATATAGATATAGGGGGCCTCCCCCTCTCCG
GCCGTCGGGCCTATCTAGATATAGGGGCCTCCCCCTCTCCCTCGGCCCCCATATAGAGAGATAGA
GATATAGAGAGAGAGATAGATAGAGATATAGATAGATAGAGAGATAGATAGAGAGATAGATAGAT
ATAGAGAGGGGGGGGCCATATCTATATAGGGGGGGGGGCCGAGTG
Found at i:162492 original size:16 final size:16
Alignment explanation
Indices: 162471--162558 Score: 76
Period size: 16 Copynumber: 5.6 Consensus size: 16
162461 CTCGGCCCCC
162471 ATATAGAGAGATAGAG
1 ATATAGAGAGATAGAG
* *
162487 ATATAGAGAGAGAGAT
1 ATATAGAGAGATAGAG
* * *
162503 AGATAGAGATATAGAT
1 ATATAGAGAGATAGAG
*
162519 AGATAGAGAGAT--AG
1 ATATAGAGAGATAGAG
162533 --ATAGAGAGATAGATAG
1 ATATAGAGAGATAG--AG
162549 ATATAGAGAG
1 ATATAGAGAG
162559 GGGGGGGCCA
Statistics
Matches: 59, Mismatches: 7, Indels: 10
0.78 0.09 0.13
Matches are distributed among these distances:
12 10 0.17
14 1 0.02
16 40 0.68
18 8 0.14
ACGTcount: A:0.50, C:0.00, G:0.31, T:0.19
Consensus pattern (16 bp):
ATATAGAGAGATAGAG
Left flanking sequence: Indices 161971 -- 162470
GGAGAACGGAGCAAAATGATGCCCCATATAGAACTATAGATAGGGCTCTAGTTTGGGAGCGAGAT
CTGTTTGGATCTGTTTGGTTGGTTGGTAATAGAAGAGGGGAAGAGGGGAAGAGGGGAAGAAGGCG
GCTCGCTCCAACCAACACTCTACCGTCCATAGAGCGGAATCCCCTGGGGTGTAGATAGACTAGAG
GGGGCAAGGGAGATGTGGGGATAGGGATTATAGTGCCACTGGAAGAAGGAACACCTGTGGGAACA
TCTCTACCGACGAACCATTTCAATAGTACGGGTGCTGCCGTGCCACGAGGCACGACCATGGAAAT
AATGGAAAAGAAGAAGTTCTGCGGTTGGACCATCTGCTCTATTCGTTCCGACCGACGAGTCCAGA
TCGAATAGGCTCTAAATCGAAAGGTGGGCCATATAGATATAGGGGGCCTCCCCCTCTCCGGCCGT
CGGGCCTATCTAGATATAGGGGCCTCCCCCTCTCCCTCGGCCCCC
Right flanking sequence: Indices 162559 -- 163058
GGGGGGGCCATATCTATATAGGGGGGGGGGCCGAGTGCCCCATATCTAGATAGGCCCCCCGATGG
GGGGGCCTATCTAGATATAGGGCCCTCCATATCTCTATATAGGGGCGGGCCTCTATATGGATAGG
GGCCCTATCTAGATATGGGGGCCCCTATCTAGAGTTCGGGGTGGGGCCCCCATATCTAGATAGGG
CCCATATCTCTATATAGGCATCTAGATATAGAGGGAGCCCCATATCGTCATAGGGGAGGCCCTGG
GGCACTCGCAGCTAGATCTATATGGGTGCTTGGGCTATATACAGTCGGGATCGAGGGTCCGAAGG
ACCCCCTAGAAACCCCTATCTCTCCCATATATATAGAGTAGAGGGGGGGGGCCCAGATAGAGATA
GGGCCTCTCCCTCTCTATGGGTATGGGGGAGAGCGCCAATTGAACTCTATATACGACGCTCACTG
CCGAGGTAGGGCCCCCATATAGAGTATATAGATAGGGCCCCCCCC
Done.