123.fas.2.7.7.80.10.50.500.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_069591
Parameters: 2 7 7 80 10 50 500
Length:  469769

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 738 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74231--74264	17	2.0	17	100	0	68	29	35	11	23	1.90
74433--74461	12	2.4	12	100	0	58	48	0	34	17	1.47
74497--74530	12	2.8	12	100	0	68	50	0	32	17	1.47
75143--75168	2	13.0	2	100	0	52	50	0	0	50	1.00
75242--75349	55	2.0	54	90	3	173	44	2	37	14	1.60
78255--78282	14	2.0	14	100	0	56	42	14	28	14	1.84
78827--78861	5	7.0	5	90	9	54	0	42	20	37	1.52
79381--79503	12	10.9	12	76	13	118	15	34	0	50	1.44
79373--79505	20	6.8	20	82	3	157	15	33	0	50	1.45
79371--79503	32	4.2	32	87	0	140	15	33	0	50	1.45
79493--79533	20	2.0	20	85	0	55	36	12	9	41	1.76
79937--80033	6	16.2	6	100	0	194	34	16	0	49	1.46
82210--82236	12	2.2	12	100	0	54	51	0	29	18	1.46
82711--82743	2	16.5	2	93	0	57	51	0	3	45	1.16
83637--83719	5	16.6	5	100	0	166	19	39	20	20	1.92
83725--83752	7	4.0	7	100	0	56	28	14	42	14	1.84
85644--85673	13	2.3	13	100	0	60	20	0	50	30	1.49
85766--85838	23	3.2	23	69	11	78	30	6	38	24	1.81
87009--87056	12	4.0	12	94	0	87	14	25	43	16	1.86
87975--88039	27	2.6	24	88	9	87	27	12	29	30	1.93
87975--88031	27	2.1	27	100	0	114	26	14	28	31	1.94
89426--89465	19	2.1	19	100	0	80	20	40	10	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89474--89498	10	2.5	10	100	0	50	12	28	24	36	1.91
90263--90340	4	19.5	4	81	0	84	19	30	0	50	1.48
90266--90336	12	5.9	12	89	0	115	18	30	0	50	1.47
90622--90662	19	2.2	19	95	0	73	17	19	58	4	1.56
90707--90752	24	1.9	24	100	0	92	17	19	58	4	1.55
91152--91206	18	3.1	18	94	0	92	16	47	10	25	1.79
91687--91759	22	3.2	22	67	7	56	45	2	28	23	1.67
91699--91864	18	8.8	18	68	13	93	44	5	28	21	1.74
93759--93813	5	11.0	5	100	0	110	20	0	60	20	1.37
93953--93988	18	2.0	18	100	0	72	27	16	27	27	1.97
94269--94297	2	14.5	2	100	0	58	51	0	0	48	1.00
95925--95952	14	2.0	14	100	0	56	35	14	35	14	1.86
95980--96034	22	2.5	22	96	0	101	30	7	36	25	1.83
96332--96422	14	6.1	14	72	16	67	24	56	0	19	1.43
96333--96422	32	2.9	32	93	4	150	24	55	0	20	1.43
96355--96412	18	3.4	18	84	15	88	22	56	0	20	1.42
96420--96579	76	2.1	76	100	0	320	14	47	11	26	1.78
96687--96721	14	2.5	14	90	0	52	31	48	2	17	1.61
98308--98343	5	7.2	5	100	0	72	38	22	19	19	1.93
100052--100106	23	2.4	23	90	0	83	43	3	38	14	1.63
100055--100112	23	2.7	22	86	7	75	44	5	39	10	1.61
102527--102561	5	7.0	5	100	0	70	40	40	20	0	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
104375--104405	5	6.2	5	100	0	62	22	58	0	19	1.40
104934--104964	16	1.9	16	100	0	62	12	12	35	38	1.82
107096--107150	18	3.1	18	97	0	101	29	29	20	21	1.98
108240--108275	15	2.5	15	95	4	65	5	52	0	41	1.24
108249--108283	15	2.3	15	90	0	52	14	40	0	45	1.45
109100--109147	5	9.6	5	100	0	96	0	37	41	20	1.53
109613--109637	11	2.3	11	100	0	50	0	64	20	16	1.30
110198--110231	5	7.0	5	93	6	61	0	0	82	17	0.67
114680--114739	5	12.0	5	100	0	120	0	40	0	60	0.97
115596--115635	5	8.0	5	100	0	80	40	20	20	20	1.92
118251--118320	23	3.0	23	97	0	131	10	21	34	34	1.87
118399--118449	21	2.4	21	83	9	59	23	27	33	15	1.95
120266--120312	23	2.0	23	95	0	85	31	21	19	27	1.97
120445--120470	13	2.0	13	100	0	52	30	38	15	15	1.88
120668--120693	12	2.2	12	100	0	52	7	42	0	50	1.31
122117--122164	25	1.9	25	100	0	96	20	27	29	22	1.99
124726--124753	5	5.6	5	100	0	56	42	21	17	17	1.89
125383--125597	8	26.9	8	73	3	83	48	0	27	23	1.57
125383--125597	12	17.9	12	74	3	83	48	0	27	23	1.57
125383--125595	16	13.3	16	69	15	109	48	0	27	23	1.57
125401--125567	63	2.7	63	84	9	243	47	1	28	22	1.58
127952--128005	12	4.6	12	95	2	92	16	38	7	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128789--128831	17	2.5	17	92	0	68	48	0	27	23	1.51
129271--129319	23	2.1	23	92	0	80	24	14	40	20	1.89
132287--132382	46	2.1	46	100	0	192	18	33	12	35	1.89
132377--132419	20	2.2	20	100	0	86	4	46	23	25	1.71
133447--133482	18	2.0	18	88	0	54	38	11	27	22	1.88
133971--133999	2	14.5	2	100	0	58	51	0	0	48	1.00
135431--135496	22	3.0	22	91	2	107	19	18	36	25	1.94
136993--137071	5	15.8	5	100	0	158	20	59	20	0	1.38
138006--138081	15	5.1	15	90	0	125	26	46	14	13	1.81
139058--139098	21	2.0	21	100	0	82	29	24	4	41	1.75
139212--139242	5	6.2	5	100	0	62	0	0	80	19	0.71
139390--139422	16	2.1	16	94	0	57	18	45	6	30	1.73
140543--140578	18	2.0	18	100	0	72	38	11	5	44	1.63
141254--141298	6	7.5	6	84	0	54	15	33	0	51	1.44
141704--141761	10	5.8	10	81	0	62	50	0	29	20	1.49
141713--141753	12	3.4	12	89	0	64	51	0	31	17	1.46
141705--141747	14	2.9	14	86	6	50	51	0	32	16	1.45
141711--141764	24	2.2	24	90	0	81	50	0	31	18	1.48
141711--141764	12	4.5	12	83	0	63	50	0	31	18	1.48
141910--141964	4	13.8	4	100	0	110	49	25	0	25	1.51
143450--143476	6	4.5	6	100	0	54	14	0	66	18	1.25
144605--144652	6	8.0	6	83	0	51	43	6	4	45	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144605--144652	8	6.0	8	80	0	51	43	6	4	45	1.48
144605--144652	10	4.8	10	84	0	51	43	6	4	45	1.48
144998--145062	5	13.0	5	100	0	130	20	20	0	60	1.37
145191--145224	5	6.8	5	93	0	59	55	0	23	20	1.43
148630--148664	5	7.0	5	100	0	70	20	20	0	60	1.37
148915--148971	28	2.0	28	100	0	114	38	28	10	22	1.87
149039--149095	5	11.6	5	96	3	107	40	19	0	40	1.51
149202--149230	13	2.2	13	100	0	58	17	27	6	48	1.72
153081--153113	5	6.6	5	100	0	66	60	0	18	21	1.36
153937--153967	4	7.8	4	100	0	62	25	22	0	51	1.48
154339--154380	5	8.4	5	100	0	84	40	19	0	40	1.51
155141--155172	16	2.0	16	93	0	55	31	21	25	21	1.98
155258--155302	12	3.8	12	93	0	81	33	26	8	31	1.87
155365--155400	6	6.0	6	100	0	72	16	16	50	16	1.79
155738--155819	42	2.0	42	100	0	164	17	35	17	30	1.92
157774--157843	37	1.9	35	86	11	97	37	14	22	25	1.92
158554--158672	12	10.1	12	68	13	59	15	35	3	45	1.63
158617--158660	2	22.5	2	81	4	54	6	40	0	52	1.28
158617--158667	10	5.2	10	85	2	68	9	39	0	50	1.35
158624--158667	20	2.2	20	95	0	79	11	38	0	50	1.39
159405--159454	25	2.0	26	92	4	84	26	30	12	32	1.92
159476--159522	19	2.5	19	89	0	67	25	19	34	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159770--159815	14	3.5	14	77	17	62	23	17	26	32	1.97
159759--159824	25	2.7	25	95	2	116	22	19	25	31	1.98
160300--160363	14	4.6	14	94	5	112	6	25	60	7	1.47
160300--160363	27	2.3	27	94	5	110	6	25	60	7	1.47
160713--160808	32	3.1	32	79	14	137	29	14	37	18	1.91
160704--160793	29	3.0	30	80	15	121	26	15	37	20	1.92
160704--160826	61	2.0	61	88	0	183	29	13	38	18	1.90
160991--161036	5	9.2	5	100	0	92	60	0	19	19	1.36
162067--162095	8	3.6	8	100	0	58	41	0	58	0	0.98
162471--162558	16	5.6	16	77	13	76	50	0	30	19	1.48

Tables:   1   2   3   4   5   6   7