Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_069591
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 469769
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
File 5 of 7
Found at i:308891 original size:33 final size:36
Alignment explanation
Indices: 308847--308929 Score: 118
Period size: 38 Copynumber: 2.3 Consensus size: 36
308837 GACTCTCCCA
308847 GCTTCGGATCCCA-GC-G-GCCATATCATATAGAGAG
1 GCTTC-GATCCCACGCAGCGCCATATCATATAGAGAG
308881 GCTTCGATCCCAGCGCAGCTGCCATATCATATAGAGAG
1 GCTTCGATCCCA-CGCAGC-GCCATATCATATAGAGAG
308919 GCTTCGATCCC
1 GCTTCGATCCC
308930 CCTATCTATA
Statistics
Matches: 44, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
33 7 0.16
34 5 0.11
35 2 0.05
36 1 0.02
38 29 0.66
ACGTcount: A:0.24, C:0.30, G:0.24, T:0.22
Consensus pattern (36 bp):
GCTTCGATCCCACGCAGCGCCATATCATATAGAGAG
Left flanking sequence: Indices 308347 -- 308846
GAGGGAGGGGGGCGACCCCCTATCTATATATGCGGCCCTCTATATAGATATGGCAACGGGAGAGG
ACCCCCCTCTCTATAGAATATATGGGGTCGAGGTCGCCGGCACCCTATATAGAATTATGGCGATC
CCTATATAGATCTGGGGGGCAGCCCTGAACTCTCTATATGCCTATATATCTCTATGGGGGAGAGG
ATTCAGATACTATTATAGGGTAGGGCGTAGGGCACCGACTCTAGCGTTGGGCCCCTATATATCTA
TCTGGCCGGCCCCCTCTCTATACTCCCCCCATATAGAGAGGCCCCTATCTAGATATCTGACCATT
CGCCATATCTATATAGAGGGGAGAACGAGATAAGATCTAGTTGGCCCTACCCTATATATATCTAA
CTAGACCAGTGCGTCCTATATCTCTAGAGCCCTATATAGAGAACTATCCCAGCGGCCGAGAGAAC
CCATCCCATCCCATCCCATCCCATATAGAGATAGGGACTCTCCCA
Right flanking sequence: Indices 308930 -- 309429
CCTATCTATATAGAGAGATATGAGCCGAGAGAACCCATATAGAGAGTAGAGGGGCTCTGCCATTG
CCATATCTATATAGAGGGGCCAGCTGCCATATAGAGGGGCCCCCCTGGAACTCTATAGGGGATAT
AGAAGGGCCAGCTGCCATGCCATATAGATAGGGGCCCCCCCATATATAGATAGGGAGAGAGGGGC
CATATATCTATATAGGGCAGGGCCCATATCTCTCTATTGGCATCAGTCGTATCACGTATAGAATT
GGATAGAATTGGATAGTTCTATCTATATCTGATAGAATAGGATGATGGATGATCCTCTCCCGTCT
AACTCCCTATCCATATATCTAGTAAGTGAGTGAGAACTCTAGATGGATGGTCGGCCATATCGGGC
CGATCTGAACCAATATAGAGAGAGGGGGCCTCCCGAGCATAGCTTCAGTTTCTCGGTGATTATAT
CTGATTACCGGACAGTCAGTCTCGGCCGGGCCCTCCCCTCCCGCC
Found at i:309610 original size:16 final size:14
Alignment explanation
Indices: 309568--309600 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
309558 TAGACTCTAT
309568 ACTCTATACTATAG
1 ACTCTATACTATAG
309582 ACTCTATACTATAG
1 ACTCTATACTATAG
309596 ACTCT
1 ACTCT
309601 CTATTCTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.33, C:0.24, G:0.06, T:0.36
Consensus pattern (14 bp):
ACTCTATACTATAG
Left flanking sequence: Indices 309068 -- 309567
CAGCTGCCATGCCATATAGATAGGGGCCCCCCCATATATAGATAGGGAGAGAGGGGCCATATATC
TATATAGGGCAGGGCCCATATCTCTCTATTGGCATCAGTCGTATCACGTATAGAATTGGATAGAA
TTGGATAGTTCTATCTATATCTGATAGAATAGGATGATGGATGATCCTCTCCCGTCTAACTCCCT
ATCCATATATCTAGTAAGTGAGTGAGAACTCTAGATGGATGGTCGGCCATATCGGGCCGATCTGA
ACCAATATAGAGAGAGGGGGCCTCCCGAGCATAGCTTCAGTTTCTCGGTGATTATATCTGATTAC
CGGACAGTCAGTCTCGGCCGGGCCCTCCCCTCCCGCCCCTATATCATATCTGATGGGGACCCCCC
CCTTTCTCTCAGATAGATTTCTCGGCTCCCAGATCGGGGGGATATTGGGTTTGAGACCAGCTCGG
CTCAGGAACGAACAGACAGTCTCGGCTGAGCCCTATAGACTCTAT
Right flanking sequence: Indices 309601 -- 310100
CTATTCTATATGGATGGAGACCGAACAATATAGATATATGGGGTCTCGGCCGGGCCCTCTATTCT
ATATAGATATAGATGGGGACGGTTAGATACTATAGATACGGCTGGGCCCCCTCCCCTCTATATAG
ATGTTATGGGGACCGCTGGGTTTGCTTTCTCGGCTCAGGACCCATATCTATATATAGGGCCCCCT
CCCCCCTCTATAGTAGATTAGATTAGATTAGATTAGAGATTAGATGGGAACCAGCTAGTTTAGTT
TCTAGTTACCGCTGGGTCCATGTTATGCCTATATAGAGTAGGCGACCGGCTGGGCCCTCCCTCTA
TATAGATTGGATGGGGACCGGCCCCTATCTCTATATTGCAGCCTCGGTCAGGCCATCTATATCTC
CGACCCCTCTCTCTATAGATATGGCCATATAGAGAAAGGGGGGGGGGCCATATCTATCTGTATCT
GACCGTATATATATCTGCCCCCTCTCTATAGATTGATTGGATGGG
Found at i:310550 original size:8 final size:8
Alignment explanation
Indices: 310537--310586 Score: 82
Period size: 8 Copynumber: 6.2 Consensus size: 8
310527 TGAGTGAGTA
310537 ATATAGAT
1 ATATAGAT
310545 ATATAGAT
1 ATATAGAT
* *
310553 AGAGAGAT
1 ATATAGAT
310561 ATATAGAT
1 ATATAGAT
310569 ATATAGAT
1 ATATAGAT
310577 ATATAGAT
1 ATATAGAT
310585 AT
1 AT
310587 CTATATGGGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
8 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (8 bp):
ATATAGAT
Left flanking sequence: Indices 310037 -- 310536
GCCATATCTATCTGTATCTGACCGTATATATATCTGCCCCCTCTCTATAGATTGATTGGATGGGG
ACCCCCCTTCTCTCTATATGGGATTCGATTCTCAACTATATTGGATGGAGCCTATATAGAATAGA
GATTTGGACCAGCGGGGCCGAACCGAAGGGGACCGGCTGTTGAGACCAGCTAGGAGCTATATAAT
GCTATACTTTGACCAGCGGGGCGGCTGGGCCCCTCGGGAGTCTATATAGAAGGGGGGCCCCAACT
ATCTTATCTTATCCTTATCAGTTGCTTCCGCCTGAGCTATATAGAATCTATATAGGGGTGGGGCA
ACCCCTCCATACTAGAGAGAGGGGAAGATCTATATAGAGGGGCCCCCTCCCCCTCTCTATGTGAT
GGTGATGTAGTTCAGATTGGTACCAACCTATAGGAACTCCGGGATAGTCTAATTCTAATCTATAG
AGTTGGAACTATATAGATCTGATCTCGTTAGGGCGTGAGTGAGTA
Right flanking sequence: Indices 310587 -- 311086
CTATATGGGGCCAACTATCCATACGGGCAGTTTGAAGGGTCTATATATGATATATAGGCGAATAG
AATTCCCATCTATATAGAGGGGGGATCGGGGATCGACTCGGCTATCGCGTCGCCGGGGACGGATC
GGTTGGTTGGTCTGGTACAACACCGCCGATAGATATAGAGGGGGCCCGGCCGACAGCACCGCATG
AATCACGAGGGAGCGACGATATCCCCATGCTCGCCCACTCTCACTCGATTCCCCGGCCTCTCTAT
AGAGATGTCGGGGCCCTAGCCGCCATTGATTCCCCCATATGGAATAGAATACGCCCTCGCCCCCG
TTGGAACAGTCGGATCGGTACCCGTAGATATTGATAGAGCCCCGTAGATATTGATAGAGCCCCAG
ATCTATATGGGAGATAGGGCCCCCCCCCAACCCAATATAGATTATGATATCTAGATTCATTCTAG
ATATATAGAGAGGGGCCCTCTCTATATATGCGCCTCCGCCGCTTC
Found at i:310957 original size:20 final size:20
Alignment explanation
Indices: 310932--310974 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
310922 CGGATCGGTA
310932 CCCGTAGATATTGATAGAGC
1 CCCGTAGATATTGATAGAGC
310952 CCCGTAGATATTGATAGAGC
1 CCCGTAGATATTGATAGAGC
310972 CCC
1 CCC
310975 AGATCTATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.23, T:0.23
Consensus pattern (20 bp):
CCCGTAGATATTGATAGAGC
Left flanking sequence: Indices 310432 -- 310931
TGTAGTTCAGATTGGTACCAACCTATAGGAACTCCGGGATAGTCTAATTCTAATCTATAGAGTTG
GAACTATATAGATCTGATCTCGTTAGGGCGTGAGTGAGTAATATAGATATATAGATAGAGAGATA
TATAGATATATAGATATATAGATATCTATATGGGGCCAACTATCCATACGGGCAGTTTGAAGGGT
CTATATATGATATATAGGCGAATAGAATTCCCATCTATATAGAGGGGGGATCGGGGATCGACTCG
GCTATCGCGTCGCCGGGGACGGATCGGTTGGTTGGTCTGGTACAACACCGCCGATAGATATAGAG
GGGGCCCGGCCGACAGCACCGCATGAATCACGAGGGAGCGACGATATCCCCATGCTCGCCCACTC
TCACTCGATTCCCCGGCCTCTCTATAGAGATGTCGGGGCCCTAGCCGCCATTGATTCCCCCATAT
GGAATAGAATACGCCCTCGCCCCCGTTGGAACAGTCGGATCGGTA
Right flanking sequence: Indices 310975 -- 311474
AGATCTATATGGGAGATAGGGCCCCCCCCCAACCCAATATAGATTATGATATCTAGATTCATTCT
AGATATATAGAGAGGGGCCCTCTCTATATATGCGCCTCCGCCGCTTCAGCACCATCTGCTCCCCC
CGGTTGATCAACTGTCTGCTCCCCCATATAGATATATAGGGCTCCGATCATCTCCGCCCTATATA
TCTCTCACGGCATCCGCCCGTCCGATCCAATCGAACGAATATATAGGGCCCCGGCATGGCAGATG
CTTCATTCGTCCCCCCGTCGTGACAGGCGCCGGATTCCCAGATAGAATATATAGGGCATCGCCAC
ACCCTCCGAGATCTCCAGTATTATTTGCCCCCGCTGCTCCTACTCATATCCCCCTATATAGAGAG
GGCCCCGGCTATATAGAGTAGGAGATATATCTATATAGGGCCATATCTCTCTATATAGGGGCATT
CATGTAGCTGCGTGCATCACCGACAAGTTCTATATGGATTCCTCT
Found at i:313134 original size:5 final size:5
Alignment explanation
Indices: 313126--313160 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
313116 CCCGCCCCCG
313126 CCCTA CCCTA CCCTA CCCTA CCCTA CCCTA CCCTA
1 CCCTA CCCTA CCCTA CCCTA CCCTA CCCTA CCCTA
313161 TATAGATCTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.20, C:0.60, G:0.00, T:0.20
Consensus pattern (5 bp):
CCCTA
Left flanking sequence: Indices 312626 -- 313125
TCCCAATCGAGGATAGCCGGTCAATCCCGATGGCCATCTATATATATCCCGGGTTAGGAGGTATT
GGTATCCCAATCGGGAATAGCGGGTCGATCCCTGTCGGTTCTTCAATCGAACAGTCTGCCTGCCC
GTTGAAACAGAAGGGCCGAATCGGCCATAGGCTCTCAATCCAACTCGATCAGTGGGCTCGGCCCT
GGGGACCAGATCGGATAGCCGGTCAATCCGCCATATATAGATATAGGGATGCTCGGTATTCCAAT
CGAGGATCGCCGGTCCGCCATATAGAGATAGAGAGCTGCTCGGCCCTATATACTATATAGAAGTG
AATCGAGGATAGCCGGTCGATCCCTCTCTCCCATCTATATCTCCCCGAGGGCCCAATCGAGAATA
CAGTGGGCTCGGTATCCCAATCGAGAATGCAGTGGGCTCGGCCCGAGAAGGAGGATAGCGGTTCA
GTGGACGCCGGATGGACGAGTGCCGATTAGAGTGCCCCGCCCCCG
Right flanking sequence: Indices 313161 -- 313660
TATAGATCTGATCTGATCTTATCTTAACCGATAGATTCACCACCCGAATATGGAAGGCTGAGATA
TAGAGAGAGATATAGATATAGGGCACCGCCTTACTGCACGGAGTCAAGGAACAACAGTCTGGTCG
AGTCAATAATGATGTTACATACGTAATATCGTAATATCGGTGAGGGGGTTGACGACCAATGATGG
ACCCCCCTTCAATCTATAGGGCCGCATTCGGGTTCGAACGACCATTCATTCATCATGGTCGGAAC
CCTATATCTAGATTATCACATCACCCTGGAAGTGACCGGGACCGCCATCCATCGATATGGAACAT
CTATATTTGACTTGACCTCTCGATATGGAATCCTCTCCGAACCCTCCAGATATAGATAGGACGGA
CCCAAGTGACCGTCGAAACCATCGAATCAATCGGGCAGGTGTTCGATTAGAATTCTAAGCCGATC
GATAGGGATATAGAGAGAGTACGATTGATTCTATGAGACTAGCTT
Found at i:314117 original size:10 final size:10
Alignment explanation
Indices: 314102--314131 Score: 60
Period size: 10 Copynumber: 3.0 Consensus size: 10
314092 CGAACGATTA
314102 GGTGTAGGTG
1 GGTGTAGGTG
314112 GGTGTAGGTG
1 GGTGTAGGTG
314122 GGTGTAGGTG
1 GGTGTAGGTG
314132 CGACTACGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 20 1.00
ACGTcount: A:0.10, C:0.00, G:0.60, T:0.30
Consensus pattern (10 bp):
GGTGTAGGTG
Left flanking sequence: Indices 313602 -- 314101
ATTCTAAGCCGATCGATAGGGATATAGAGAGAGTACGATTGATTCTATGAGACTAGCTTGATAGA
GTGCCCCCCCGGTCGAGGCCCCTCTATCTATATGGCATCGGCGGGTCGGCGGGACAGCTAACAAC
ATCAATACTGCGTGGGTGCCGAACTCTATGGGATATCAATTCCGCTTGTAAAGCTCTTTGTATGA
TCCGGGTGGAACATGCGGTAAGAATAATGCGGCCCGGCTCATCGAACAGCGCAGATATATAGATC
ATTTCCAGAGATATATATATTCTATATAGGGTCTAGCAACAATAGGCAGCAGGTACATATATATA
GATCTATATGGCGATAGGGCCCTCTGCCCCACCCCCACCCACATATTGTCTGTCCTGTCCCGCCG
GAAGTGTAGTTCACCGGTTTCACGGAATGACGGCTCACTCAAACCCCGCATATCCGGAAATGTAG
TTCACCGGTTTCACGGAATGACGGCTCACTCGAACCGAACGATTA
Right flanking sequence: Indices 314132 -- 314631
CGACTACGACTACTCGAATGGAGGAATGAATCTCCCAGTTGTTCCTATTTGATCCGGGACCTATT
GATCTACGAGGGTGCCTATAGATTTCTGGGGTCCCCTATCTAGACTCACTCCCATAGAAATAATA
TGAGAGGGTGGGGTGGGGGCGCTCGACAGATATAGATAGAGGGGGGTCTCGGTAGGTCATTGATG
CGCATGCCATATATAGATAGGGGGTTCCGGCTGAAGTATGACGTTTGCATTGATGGCCCCCCGAA
TGGAATTGAAAATATTTGTACACAATGTTTGTCAAACAAAACAATGTTTGTACACAATGTTCGGT
TTGTACACAAACGCAATGTTTGTACACAATGTTTGCACACAATGTTTGTCAAACAAAACAATGTT
TGTCAAACAATGTTTGTACTCTCTATAGTTCTGGGGAGGTTGAATATAGAGAGAGGGGGGATCTC
CCCCGTTAGGGGGAGGAGGGCGACTATCTATAGTCGTAGTCGTAG
Found at i:314488 original size:13 final size:13
Alignment explanation
Indices: 314470--314505 Score: 63
Period size: 13 Copynumber: 2.8 Consensus size: 13
314460 TACACAAACG
314470 CAATGTTTGTACA
1 CAATGTTTGTACA
*
314483 CAATGTTTGCACA
1 CAATGTTTGTACA
314496 CAATGTTTGT
1 CAATGTTTGT
314506 CAAACAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.28, C:0.17, G:0.17, T:0.39
Consensus pattern (13 bp):
CAATGTTTGTACA
Left flanking sequence: Indices 313970 -- 314469
TATTGTCTGTCCTGTCCCGCCGGAAGTGTAGTTCACCGGTTTCACGGAATGACGGCTCACTCAAA
CCCCGCATATCCGGAAATGTAGTTCACCGGTTTCACGGAATGACGGCTCACTCGAACCGAACGAT
TAGGTGTAGGTGGGTGTAGGTGGGTGTAGGTGCGACTACGACTACTCGAATGGAGGAATGAATCT
CCCAGTTGTTCCTATTTGATCCGGGACCTATTGATCTACGAGGGTGCCTATAGATTTCTGGGGTC
CCCTATCTAGACTCACTCCCATAGAAATAATATGAGAGGGTGGGGTGGGGGCGCTCGACAGATAT
AGATAGAGGGGGGTCTCGGTAGGTCATTGATGCGCATGCCATATATAGATAGGGGGTTCCGGCTG
AAGTATGACGTTTGCATTGATGGCCCCCCGAATGGAATTGAAAATATTTGTACACAATGTTTGTC
AAACAAAACAATGTTTGTACACAATGTTCGGTTTGTACACAAACG
Right flanking sequence: Indices 314506 -- 315005
CAAACAAAACAATGTTTGTCAAACAATGTTTGTACTCTCTATAGTTCTGGGGAGGTTGAATATAG
AGAGAGGGGGGATCTCCCCCGTTAGGGGGAGGAGGGCGACTATCTATAGTCGTAGTCGTAGTCGG
GCCGGCCGGGCCCGTATATAGAGATATAGAGGGCCCCGACGAAGGAGCCCTATATAGATTAGGTC
ATAGATATGGCGACAGCGCCGAAACTCAGACAGAGCCAACGCCAACCACTCGGGCTATCGAGCCT
AGATATCTCTCTATATGGGGCGCTCGGACGAGAGACAGATAGATATATATATATGAACGAAACGC
CCACTTCTCCACCGCCCCCTCGGCATAATGTATGGGCCGACGCAGCTCCCCTTCTATCGGCCCGG
GCAGTGAGCGACAGCAAACTAGAGTGCCCTGCCAGTTACTTGAAGACTCTCTCGATTCCCAGCTA
ATAGCTAATACCAGTATAGAGCTGCTGTATAGAGTGCCATTATTC
Found at i:314491 original size:32 final size:31
Alignment explanation
Indices: 314406--314498 Score: 96
Period size: 32 Copynumber: 2.8 Consensus size: 31
314396 ATTGAAAATA
*
314406 TTTGTACACAATGTTTGTCAAACAAAACAATG
1 TTTGTACACAATGTTTGT-ACACAAAACAATG
*
314438 TTTGTACACAATGTTCGGTTTGTACACAAACGCAATG
1 TTTGTACACAA---T--GTTTGTACACAAA-ACAATG
*
314475 TTTGTACACAATGTTTGCACACAA
1 TTTGTACACAATGTTTGTACACAA
314499 TGTTTGTCAA
Statistics
Matches: 52, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
32 22 0.42
34 1 0.02
35 1 0.02
36 6 0.12
37 22 0.42
ACGTcount: A:0.34, C:0.18, G:0.15, T:0.32
Consensus pattern (31 bp):
TTTGTACACAATGTTTGTACACAAAACAATG
Left flanking sequence: Indices 313906 -- 314405
GGCAGCAGGTACATATATATAGATCTATATGGCGATAGGGCCCTCTGCCCCACCCCCACCCACAT
ATTGTCTGTCCTGTCCCGCCGGAAGTGTAGTTCACCGGTTTCACGGAATGACGGCTCACTCAAAC
CCCGCATATCCGGAAATGTAGTTCACCGGTTTCACGGAATGACGGCTCACTCGAACCGAACGATT
AGGTGTAGGTGGGTGTAGGTGGGTGTAGGTGCGACTACGACTACTCGAATGGAGGAATGAATCTC
CCAGTTGTTCCTATTTGATCCGGGACCTATTGATCTACGAGGGTGCCTATAGATTTCTGGGGTCC
CCTATCTAGACTCACTCCCATAGAAATAATATGAGAGGGTGGGGTGGGGGCGCTCGACAGATATA
GATAGAGGGGGGTCTCGGTAGGTCATTGATGCGCATGCCATATATAGATAGGGGGTTCCGGCTGA
AGTATGACGTTTGCATTGATGGCCCCCCGAATGGAATTGAAAATA
Right flanking sequence: Indices 314499 -- 314998
TGTTTGTCAAACAAAACAATGTTTGTCAAACAATGTTTGTACTCTCTATAGTTCTGGGGAGGTTG
AATATAGAGAGAGGGGGGATCTCCCCCGTTAGGGGGAGGAGGGCGACTATCTATAGTCGTAGTCG
TAGTCGGGCCGGCCGGGCCCGTATATAGAGATATAGAGGGCCCCGACGAAGGAGCCCTATATAGA
TTAGGTCATAGATATGGCGACAGCGCCGAAACTCAGACAGAGCCAACGCCAACCACTCGGGCTAT
CGAGCCTAGATATCTCTCTATATGGGGCGCTCGGACGAGAGACAGATAGATATATATATATGAAC
GAAACGCCCACTTCTCCACCGCCCCCTCGGCATAATGTATGGGCCGACGCAGCTCCCCTTCTATC
GGCCCGGGCAGTGAGCGACAGCAAACTAGAGTGCCCTGCCAGTTACTTGAAGACTCTCTCGATTC
CCAGCTAATAGCTAATACCAGTATAGAGCTGCTGTATAGAGTGCC
Found at i:314519 original size:19 final size:19
Alignment explanation
Indices: 314495--314531 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
314485 ATGTTTGCAC
314495 ACAATGTTTGTCAAACAAA
1 ACAATGTTTGTCAAACAAA
314514 ACAATGTTTGTCAAACAA
1 ACAATGTTTGTCAAACAA
314532 TGTTTGTACT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.46, C:0.16, G:0.11, T:0.27
Consensus pattern (19 bp):
ACAATGTTTGTCAAACAAA
Left flanking sequence: Indices 313995 -- 314494
GTGTAGTTCACCGGTTTCACGGAATGACGGCTCACTCAAACCCCGCATATCCGGAAATGTAGTTC
ACCGGTTTCACGGAATGACGGCTCACTCGAACCGAACGATTAGGTGTAGGTGGGTGTAGGTGGGT
GTAGGTGCGACTACGACTACTCGAATGGAGGAATGAATCTCCCAGTTGTTCCTATTTGATCCGGG
ACCTATTGATCTACGAGGGTGCCTATAGATTTCTGGGGTCCCCTATCTAGACTCACTCCCATAGA
AATAATATGAGAGGGTGGGGTGGGGGCGCTCGACAGATATAGATAGAGGGGGGTCTCGGTAGGTC
ATTGATGCGCATGCCATATATAGATAGGGGGTTCCGGCTGAAGTATGACGTTTGCATTGATGGCC
CCCCGAATGGAATTGAAAATATTTGTACACAATGTTTGTCAAACAAAACAATGTTTGTACACAAT
GTTCGGTTTGTACACAAACGCAATGTTTGTACACAATGTTTGCAC
Right flanking sequence: Indices 314532 -- 315031
TGTTTGTACTCTCTATAGTTCTGGGGAGGTTGAATATAGAGAGAGGGGGGATCTCCCCCGTTAGG
GGGAGGAGGGCGACTATCTATAGTCGTAGTCGTAGTCGGGCCGGCCGGGCCCGTATATAGAGATA
TAGAGGGCCCCGACGAAGGAGCCCTATATAGATTAGGTCATAGATATGGCGACAGCGCCGAAACT
CAGACAGAGCCAACGCCAACCACTCGGGCTATCGAGCCTAGATATCTCTCTATATGGGGCGCTCG
GACGAGAGACAGATAGATATATATATATGAACGAAACGCCCACTTCTCCACCGCCCCCTCGGCAT
AATGTATGGGCCGACGCAGCTCCCCTTCTATCGGCCCGGGCAGTGAGCGACAGCAAACTAGAGTG
CCCTGCCAGTTACTTGAAGACTCTCTCGATTCCCAGCTAATAGCTAATACCAGTATAGAGCTGCT
GTATAGAGTGCCATTATTCATTTATTGTTTCGGCACGGACTCCGC
Found at i:314529 original size:14 final size:14
Alignment explanation
Indices: 314470--314538 Score: 61
Period size: 13 Copynumber: 4.7 Consensus size: 14
314460 TACACAAACG
*
314470 CAATGTTTGT-ACA
1 CAATGTTTGTCAAA
*
314483 CAATGTTTG-CACA
1 CAATGTTTGTCAAA
314496 CAATGTTTGTCAAACAAAA
1 CAATGTTTGT----C-AAA
314515 CAATGTTTGTCAAA
1 CAATGTTTGTCAAA
314529 CAATGTTTGT
1 CAATGTTTGT
314539 ACTCTCTATA
Statistics
Matches: 48, Mismatches: 1, Indels: 13
0.77 0.02 0.21
Matches are distributed among these distances:
13 21 0.44
14 13 0.27
15 1 0.02
18 1 0.02
19 12 0.25
ACGTcount: A:0.35, C:0.16, G:0.14, T:0.35
Consensus pattern (14 bp):
CAATGTTTGTCAAA
Left flanking sequence: Indices 313970 -- 314469
TATTGTCTGTCCTGTCCCGCCGGAAGTGTAGTTCACCGGTTTCACGGAATGACGGCTCACTCAAA
CCCCGCATATCCGGAAATGTAGTTCACCGGTTTCACGGAATGACGGCTCACTCGAACCGAACGAT
TAGGTGTAGGTGGGTGTAGGTGGGTGTAGGTGCGACTACGACTACTCGAATGGAGGAATGAATCT
CCCAGTTGTTCCTATTTGATCCGGGACCTATTGATCTACGAGGGTGCCTATAGATTTCTGGGGTC
CCCTATCTAGACTCACTCCCATAGAAATAATATGAGAGGGTGGGGTGGGGGCGCTCGACAGATAT
AGATAGAGGGGGGTCTCGGTAGGTCATTGATGCGCATGCCATATATAGATAGGGGGTTCCGGCTG
AAGTATGACGTTTGCATTGATGGCCCCCCGAATGGAATTGAAAATATTTGTACACAATGTTTGTC
AAACAAAACAATGTTTGTACACAATGTTCGGTTTGTACACAAACG
Right flanking sequence: Indices 314539 -- 315038
ACTCTCTATAGTTCTGGGGAGGTTGAATATAGAGAGAGGGGGGATCTCCCCCGTTAGGGGGAGGA
GGGCGACTATCTATAGTCGTAGTCGTAGTCGGGCCGGCCGGGCCCGTATATAGAGATATAGAGGG
CCCCGACGAAGGAGCCCTATATAGATTAGGTCATAGATATGGCGACAGCGCCGAAACTCAGACAG
AGCCAACGCCAACCACTCGGGCTATCGAGCCTAGATATCTCTCTATATGGGGCGCTCGGACGAGA
GACAGATAGATATATATATATGAACGAAACGCCCACTTCTCCACCGCCCCCTCGGCATAATGTAT
GGGCCGACGCAGCTCCCCTTCTATCGGCCCGGGCAGTGAGCGACAGCAAACTAGAGTGCCCTGCC
AGTTACTTGAAGACTCTCTCGATTCCCAGCTAATAGCTAATACCAGTATAGAGCTGCTGTATAGA
GTGCCATTATTCATTTATTGTTTCGGCACGGACTCCGCCAATCCA
Found at i:315884 original size:6 final size:6
Alignment explanation
Indices: 315873--315898 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
315863 GGCTCGACCG
315873 CCTATA CCTATA CCTATA CCTATA CC
1 CCTATA CCTATA CCTATA CCTATA CC
315899 GCGCTCGGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.31, C:0.38, G:0.00, T:0.31
Consensus pattern (6 bp):
CCTATA
Left flanking sequence: Indices 315373 -- 315872
CCAAGACCCCATTCCCTCAGACTATATTACATACGTGATATAGATATATGAGCTCAAGGACAGGA
CTTCATTTCGTCGAGTCAGAGATGAGATTGTTTGCTAATTTAATTGTCGAGTTGGGGCTTGGTCC
GGAGCCATGCACTAACATTCTTCCGGTGGGCTTACTGGATTCCATAGTTCCTTGTCACCACACCA
TTCATCCGGAGTGCCGCGGAATATCACTACACCCTTCCCTTATGTAGTGATATAACGATGCCCTC
CCCTTATGTCGTGTCGTAGTAGTAACCCCGGAACCGCCCCCATTATCTCATCGAGTGCCTCGGGG
CCGACTTCAGTGACCATATATAGATAAGATATATATCACTCGGCGCCCTTATATCTGTATGGGGG
GGCCGGTTCTATTCTATAGATAGAGGGAGTTAGTCGGTCGATTCCGACTTCAGTGCGGAAGAGTT
GGTATGAGCCCTATCTAGAATTCTGAACTATGGAGGGCTCGACCG
Right flanking sequence: Indices 315899 -- 316398
GCGCTCGGCCAATACTATTCTATAATCCTCTATTCTCTAATCGGGCCCCCGGGCACCCTATCTAT
ATATGGGCATGGGCACCCCCCCCCCCCCCTCCTAGTTCAGATTAGATATATGGCACCCCCACTAT
CTTCCTGGTGAGCCGAGCGGAAGAGAGCCGGTGATCCATATCATCTCATCCATATGGGGTCCCGT
CCCTTTATCTCTCTATATGGCGAGACGGGATATACAACCCAACCGATGACTGGTTGTATCTTGGA
TAGAATGGATGCATCCATGCACCCCTATAGATCTATCTGCCCGGGGGCCGACTTCAGTATTCAGG
GCCCCCTATCTATATATGGCATTGACCAGGCGACTTCAGCCGGGTAGGGGATTGACCTCTCTCTA
TATGGCCCCCTATAGAGAATAGAGATTAGATGGGCGGAGTTATGTCCTGTAGTTCAGGGCCATAG
TGAGGTGGGTCACCCGAAATCACCCCCGCGCCCTGAATGAGACTA
Found at i:316448 original size:6 final size:6
Alignment explanation
Indices: 316437--316589 Score: 82
Period size: 6 Copynumber: 26.0 Consensus size: 6
316427 TTGGTGGCCC
* * *** *
316437 CTATCT CTATCT GTATCTCT CTCTCT CTATCT CTCGAT CTATCT ATATCT
1 CTATCT CTATCT CTA--TCT CTATCT CTATCT CTATCT CTATCT CTATCT
* *** * *
316487 C--TCT CTCTCT CTATCT CTCGAT CTATCT ATATCT C--TCT CTCTCT
1 CTATCT CTATCT CTATCT CTATCT CTATCT CTATCT CTATCT CTATCT
* * * * * *
316531 CTATCT ATATCT ATATC- ATATCT CTCTCT CTATCT CTCTCT ATATCT
1 CTATCT CTATCT CTATCT CTATCT CTATCT CTATCT CTATCT CTATCT
*
316578 CTCTCT CTATCT
1 CTATCT CTATCT
316590 GAACTCTATA
Statistics
Matches: 108, Mismatches: 32, Indels: 14
0.70 0.21 0.09
Matches are distributed among these distances:
4 8 0.07
5 5 0.05
6 91 0.84
8 4 0.04
ACGTcount: A:0.16, C:0.34, G:0.02, T:0.48
Consensus pattern (6 bp):
CTATCT
Left flanking sequence: Indices 315937 -- 316436
AATCGGGCCCCCGGGCACCCTATCTATATATGGGCATGGGCACCCCCCCCCCCCCCTCCTAGTTC
AGATTAGATATATGGCACCCCCACTATCTTCCTGGTGAGCCGAGCGGAAGAGAGCCGGTGATCCA
TATCATCTCATCCATATGGGGTCCCGTCCCTTTATCTCTCTATATGGCGAGACGGGATATACAAC
CCAACCGATGACTGGTTGTATCTTGGATAGAATGGATGCATCCATGCACCCCTATAGATCTATCT
GCCCGGGGGCCGACTTCAGTATTCAGGGCCCCCTATCTATATATGGCATTGACCAGGCGACTTCA
GCCGGGTAGGGGATTGACCTCTCTCTATATGGCCCCCTATAGAGAATAGAGATTAGATGGGCGGA
GTTATGTCCTGTAGTTCAGGGCCATAGTGAGGTGGGTCACCCGAAATCACCCCCGCGCCCTGAAT
GAGACTATGGGGGCCCCTATCTATATGGCCTCGAGTTGGTGGCCC
Right flanking sequence: Indices 316590 -- 317089
GAACTCTATATATGCTCGACCTGGAGTTGGGAGTGCCCTATATAGAGAACTAGACCAGTCTGGAT
ATGGAATATACATATTCACGGGGGCCTATAAATGGGTATGCACTCGATCTATATAGCCCTATTGG
AAGGGGGGAGGCCGAGGCGTCGGGTTCCTCTTTCTCTTTCTCTATGCGCGACAGCACTCGACGCC
CTATAGTTCTGTTCTATATGGCCCTCTCCCGCCCCGGCGGTCCCCTATCTAGATATGGGGCTAGA
TATGGGTGGGGCCCCCCTCTCTCTATATGATATGGGGGCAGTCGTATCTCGGTGCTCCGTCCGGT
GTTTCGGTCAGTTGCCCTATAGATCTATATGGCCATCAGTTGCCCTATAGATCTATATGGCCATC
AGTTGCTCGAGAGATCAGTTGCTCGAAAGACCCCCCTCCCTGAACTCTCTTATCTATCTGGCAGT
TGCTCGAAAGACCCCCCTCCCTCTAGAGAGATCTATATAGATGTT
Found at i:316459 original size:2 final size:2
Alignment explanation
Indices: 316452--316585 Score: 70
Period size: 2 Copynumber: 66.5 Consensus size: 2
316442 TCTATCTGTA
* ** * * *
316452 TC TC TC TC TC TC TA TC TC TC GA TC TA TC TA TA TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* ** * * * *
316494 TC TC TA TC TC TC GA TC TA TC TA TA TC TC TC TC TC TC TC TA TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
* * * * * * * *
316536 TA TA TC TA TA TC ATA TC TC TC TC TC TA TC TC TC TC TA TA TC TC
1 TC TC TC TC TC TC -TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
316579 TC TC TC T
1 TC TC TC T
316586 ATCTGAACTC
Statistics
Matches: 99, Mismatches: 32, Indels: 2
0.74 0.24 0.02
Matches are distributed among these distances:
2 98 0.99
3 1 0.01
ACGTcount: A:0.15, C:0.35, G:0.01, T:0.49
Consensus pattern (2 bp):
TC
Left flanking sequence: Indices 315952 -- 316451
CACCCTATCTATATATGGGCATGGGCACCCCCCCCCCCCCCTCCTAGTTCAGATTAGATATATGG
CACCCCCACTATCTTCCTGGTGAGCCGAGCGGAAGAGAGCCGGTGATCCATATCATCTCATCCAT
ATGGGGTCCCGTCCCTTTATCTCTCTATATGGCGAGACGGGATATACAACCCAACCGATGACTGG
TTGTATCTTGGATAGAATGGATGCATCCATGCACCCCTATAGATCTATCTGCCCGGGGGCCGACT
TCAGTATTCAGGGCCCCCTATCTATATATGGCATTGACCAGGCGACTTCAGCCGGGTAGGGGATT
GACCTCTCTCTATATGGCCCCCTATAGAGAATAGAGATTAGATGGGCGGAGTTATGTCCTGTAGT
TCAGGGCCATAGTGAGGTGGGTCACCCGAAATCACCCCCGCGCCCTGAATGAGACTATGGGGGCC
CCTATCTATATGGCCTCGAGTTGGTGGCCCCTATCTCTATCTGTA
Right flanking sequence: Indices 316586 -- 317085
ATCTGAACTCTATATATGCTCGACCTGGAGTTGGGAGTGCCCTATATAGAGAACTAGACCAGTCT
GGATATGGAATATACATATTCACGGGGGCCTATAAATGGGTATGCACTCGATCTATATAGCCCTA
TTGGAAGGGGGGAGGCCGAGGCGTCGGGTTCCTCTTTCTCTTTCTCTATGCGCGACAGCACTCGA
CGCCCTATAGTTCTGTTCTATATGGCCCTCTCCCGCCCCGGCGGTCCCCTATCTAGATATGGGGC
TAGATATGGGTGGGGCCCCCCTCTCTCTATATGATATGGGGGCAGTCGTATCTCGGTGCTCCGTC
CGGTGTTTCGGTCAGTTGCCCTATAGATCTATATGGCCATCAGTTGCCCTATAGATCTATATGGC
CATCAGTTGCTCGAGAGATCAGTTGCTCGAAAGACCCCCCTCCCTGAACTCTCTTATCTATCTGG
CAGTTGCTCGAAAGACCCCCCTCCCTCTAGAGAGATCTATATAGA
Found at i:316962 original size:28 final size:28
Alignment explanation
Indices: 316922--316985 Score: 128
Period size: 28 Copynumber: 2.3 Consensus size: 28
316912 GGTGTTTCGG
316922 TCAGTTGCCCTATAGATCTATATGGCCA
1 TCAGTTGCCCTATAGATCTATATGGCCA
316950 TCAGTTGCCCTATAGATCTATATGGCCA
1 TCAGTTGCCCTATAGATCTATATGGCCA
316978 TCAGTTGC
1 TCAGTTGC
316986 TCGAGAGATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 36 1.00
ACGTcount: A:0.23, C:0.25, G:0.19, T:0.33
Consensus pattern (28 bp):
TCAGTTGCCCTATAGATCTATATGGCCA
Left flanking sequence: Indices 316422 -- 316921
TCGAGTTGGTGGCCCCTATCTCTATCTGTATCTCTCTCTCTCTATCTCTCGATCTATCTATATCT
CTCTCTCTCTCTATCTCTCGATCTATCTATATCTCTCTCTCTCTCTATCTATATCTATATCATAT
CTCTCTCTCTATCTCTCTCTATATCTCTCTCTCTATCTGAACTCTATATATGCTCGACCTGGAGT
TGGGAGTGCCCTATATAGAGAACTAGACCAGTCTGGATATGGAATATACATATTCACGGGGGCCT
ATAAATGGGTATGCACTCGATCTATATAGCCCTATTGGAAGGGGGGAGGCCGAGGCGTCGGGTTC
CTCTTTCTCTTTCTCTATGCGCGACAGCACTCGACGCCCTATAGTTCTGTTCTATATGGCCCTCT
CCCGCCCCGGCGGTCCCCTATCTAGATATGGGGCTAGATATGGGTGGGGCCCCCCTCTCTCTATA
TGATATGGGGGCAGTCGTATCTCGGTGCTCCGTCCGGTGTTTCGG
Right flanking sequence: Indices 316986 -- 317485
TCGAGAGATCAGTTGCTCGAAAGACCCCCCTCCCTGAACTCTCTTATCTATCTGGCAGTTGCTCG
AAAGACCCCCCTCCCTCTAGAGAGATCTATATAGATGTTATAGATAGGGCGCCCATATCATATAT
CTAGAGTCCTCGGTAGCTTTCTCGACCAGATCCAGATAGTTCAGGATAGGGCACTATATCCAGTT
GTATCACGTATATGATATGATATGATATGATATAATACAGATACGCCCCTGTCGTTGGTCCCTAT
ATCTATAGGGGCCGGCCAAACAAACAGAAGCGGGTGAGTCCCCAACCCAACTAGATATTGGATCG
GGCCAATCGGGCCGAAGGCTCAGGCTCGTGCCGAAGGCTCGGGCTCTATAACGAGTTTCGGGTCT
AGTGGCCCATCTATCTATCTATATGCGGCTCTATAACCAGTTACTGGAATAGCCCGGTTGAACTA
GAACTGGCAGGCCGGAAAGAGAGATATAGGGCCTCAATCTGGTTG
Found at i:316994 original size:28 final size:28
Alignment explanation
Indices: 316922--316995 Score: 103
Period size: 28 Copynumber: 2.6 Consensus size: 28
316912 GGTGTTTCGG
* *
316922 TCAGTTGCCCTATAGATCTATATGGCCA
1 TCAGTTGCCCGAGAGATCTATATGGCCA
* *
316950 TCAGTTGCCCTATAGATCTATATGGCCA
1 TCAGTTGCCCGAGAGATCTATATGGCCA
*
316978 TCAGTTGCTCGAGAGATC
1 TCAGTTGCCCGAGAGATC
316996 AGTTGCTCGA
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.31
Consensus pattern (28 bp):
TCAGTTGCCCGAGAGATCTATATGGCCA
Left flanking sequence: Indices 316422 -- 316921
TCGAGTTGGTGGCCCCTATCTCTATCTGTATCTCTCTCTCTCTATCTCTCGATCTATCTATATCT
CTCTCTCTCTCTATCTCTCGATCTATCTATATCTCTCTCTCTCTCTATCTATATCTATATCATAT
CTCTCTCTCTATCTCTCTCTATATCTCTCTCTCTATCTGAACTCTATATATGCTCGACCTGGAGT
TGGGAGTGCCCTATATAGAGAACTAGACCAGTCTGGATATGGAATATACATATTCACGGGGGCCT
ATAAATGGGTATGCACTCGATCTATATAGCCCTATTGGAAGGGGGGAGGCCGAGGCGTCGGGTTC
CTCTTTCTCTTTCTCTATGCGCGACAGCACTCGACGCCCTATAGTTCTGTTCTATATGGCCCTCT
CCCGCCCCGGCGGTCCCCTATCTAGATATGGGGCTAGATATGGGTGGGGCCCCCCTCTCTCTATA
TGATATGGGGGCAGTCGTATCTCGGTGCTCCGTCCGGTGTTTCGG
Right flanking sequence: Indices 316996 -- 317495
AGTTGCTCGAAAGACCCCCCTCCCTGAACTCTCTTATCTATCTGGCAGTTGCTCGAAAGACCCCC
CTCCCTCTAGAGAGATCTATATAGATGTTATAGATAGGGCGCCCATATCATATATCTAGAGTCCT
CGGTAGCTTTCTCGACCAGATCCAGATAGTTCAGGATAGGGCACTATATCCAGTTGTATCACGTA
TATGATATGATATGATATGATATAATACAGATACGCCCCTGTCGTTGGTCCCTATATCTATAGGG
GCCGGCCAAACAAACAGAAGCGGGTGAGTCCCCAACCCAACTAGATATTGGATCGGGCCAATCGG
GCCGAAGGCTCAGGCTCGTGCCGAAGGCTCGGGCTCTATAACGAGTTTCGGGTCTAGTGGCCCAT
CTATCTATCTATATGCGGCTCTATAACCAGTTACTGGAATAGCCCGGTTGAACTAGAACTGGCAG
GCCGGAAAGAGAGATATAGGGCCTCAATCTGGTTGGGCTTCGACT
Found at i:317804 original size:10 final size:10
Alignment explanation
Indices: 317791--317824 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
317781 GTGGGGAGCG
*
317791 GCTGAGATCG
1 GCTGAGATCA
317801 GCTGAGATCA
1 GCTGAGATCA
317811 GCTGAGATCA
1 GCTGAGATCA
317821 GCTG
1 GCTG
317825 GGGTCATAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 23 1.00
ACGTcount: A:0.24, C:0.21, G:0.35, T:0.21
Consensus pattern (10 bp):
GCTGAGATCA
Left flanking sequence: Indices 317291 -- 317790
CCCAACTAGATATTGGATCGGGCCAATCGGGCCGAAGGCTCAGGCTCGTGCCGAAGGCTCGGGCT
CTATAACGAGTTTCGGGTCTAGTGGCCCATCTATCTATCTATATGCGGCTCTATAACCAGTTACT
GGAATAGCCCGGTTGAACTAGAACTGGCAGGCCGGAAAGAGAGATATAGGGCCTCAATCTGGTTG
GGCTTCGACTAGTTGGGCTACCTTATGCCCCGAGGGGGCCCCCATAGGGGCCCTATAGAGATATA
GATCTCTCTGGGGGGAGGGGCGACTAGCCAGATAGATATAGAGGCCTCGCCAGATAGATAAGATA
GTTCGGGGCCCAGATCTAGTCTCTATAGATGGGGCCATCTCTCTATACTAGCCATCTCTCTATAG
AGAGGGGGCGGGGAGGCCGAGCCCCCCTCCCTATTCTATCTTCTCTATATGGGTCCTGAGATAGT
GGGCTGCCCTGAGATAGTGTAGTGGGGATGAGATAGTGGGGAGCG
Right flanking sequence: Indices 317825 -- 318324
GGGTCATAGCTGCGACCAACCAATCTTGTCAATCCTGTCACGTTGAGATCATGGCTGGTCAATCT
TGTTACGTTGGCTGCGACCAACCAATCTTGTCACGTCGAGATCATAGCTGATAGTGGGGAGCGGC
TGAGATCATAGCACGCACCCCTTTCTTCATTGGCGAGATATAATAGAGAGGGGCGCGTCGTCCCC
ATTCCCTTTCTTCATTGACCTCATCTTCTTACCCCGGCTGGCTATGGCTACTTCGGATAGTCGAG
TCGGCGGATAGTCGAGTCGGAGCAAAAAACGGGCCTTGCTCTCTCCCCTTTCCAAATCACTCGCT
CTCGTGACGACTCCGAATGGTAAGTCCCGACCGCTCACAGTAGTAGTACCGATAGAGAAGATCAT
GAAAAGGGCGATAAGAGCGGTACTCGAATCCATTTACGATCCCGAGTTTCTGGACACATCGCACT
TCCGCCCGGGTCGAGGCTGCCACTCGGCCCTAATACGGATTAGAA
Found at i:318094 original size:16 final size:16
Alignment explanation
Indices: 318073--318104 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
318063 ATGGCTACTT
318073 CGGATAGTCGAGTCGG
1 CGGATAGTCGAGTCGG
318089 CGGATAGTCGAGTCGG
1 CGGATAGTCGAGTCGG
318105 AGCAAAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.19, C:0.19, G:0.44, T:0.19
Consensus pattern (16 bp):
CGGATAGTCGAGTCGG
Left flanking sequence: Indices 317573 -- 318072
ACTAGCCAGATAGATATAGAGGCCTCGCCAGATAGATAAGATAGTTCGGGGCCCAGATCTAGTCT
CTATAGATGGGGCCATCTCTCTATACTAGCCATCTCTCTATAGAGAGGGGGCGGGGAGGCCGAGC
CCCCCTCCCTATTCTATCTTCTCTATATGGGTCCTGAGATAGTGGGCTGCCCTGAGATAGTGTAG
TGGGGATGAGATAGTGGGGAGCGGCTGAGATCGGCTGAGATCAGCTGAGATCAGCTGGGGTCATA
GCTGCGACCAACCAATCTTGTCAATCCTGTCACGTTGAGATCATGGCTGGTCAATCTTGTTACGT
TGGCTGCGACCAACCAATCTTGTCACGTCGAGATCATAGCTGATAGTGGGGAGCGGCTGAGATCA
TAGCACGCACCCCTTTCTTCATTGGCGAGATATAATAGAGAGGGGCGCGTCGTCCCCATTCCCTT
TCTTCATTGACCTCATCTTCTTACCCCGGCTGGCTATGGCTACTT
Right flanking sequence: Indices 318105 -- 318604
AGCAAAAAACGGGCCTTGCTCTCTCCCCTTTCCAAATCACTCGCTCTCGTGACGACTCCGAATGG
TAAGTCCCGACCGCTCACAGTAGTAGTACCGATAGAGAAGATCATGAAAAGGGCGATAAGAGCGG
TACTCGAATCCATTTACGATCCCGAGTTTCTGGACACATCGCACTTCCGCCCGGGTCGAGGCTGC
CACTCGGCCCTAATACGGATTAGAAAAGAGTGGGGCTATTCAAATTGGTTCTTGGAATTCGGCAT
CAGCAAGTGTTTCCACACCATCGACCGACATCGACTCATCCCAATCCTGAAGGAAGAGATCGATG
GGGGGGCGGGAAAGAATAGTTTGTTCTTTCGCCTCATCGGACCCCCTCCCTATAGATCTGGTACT
CGACCGCCATCTAACTATATGCTCGACCCGGCGCGCAGATTTTTCTTTTCTCCCATATATCTAGG
GGGAGCCCGCCCCCCTCTAGATATATGGGATAGGGATATGGATAT
Found at i:320958 original size:24 final size:24
Alignment explanation
Indices: 320931--320983 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
320921 TATCCCCCGA
320931 GGGGGGGCCCTATCTAGATCTGGG
1 GGGGGGGCCCTATCTAGATCTGGG
320955 GGGGGGGCCCTATCTAGATCTGGG
1 GGGGGGGCCCTATCTAGATCTGGG
320979 GGGGG
1 GGGGG
320984 TCGAGTGGCG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.11, C:0.19, G:0.51, T:0.19
Consensus pattern (24 bp):
GGGGGGGCCCTATCTAGATCTGGG
Left flanking sequence: Indices 320431 -- 320930
CTCCTCGGCCCCGAGGGGGCCGAGGCCCTTTCGTCGATCGAGAGCCCCTATCTGAACTCTGGTGC
CCCCCCCTCTCTCTATATGGCCCTCGGCCCCCCTATCTATATATGGGCATAACTCTAGAGAGTCC
CGTCGCCATATCCATCTATACTCACTCTATATGGGAGATAGGGGGCCCCCATATATGGATAGGGC
CCAACCGAGAGACGGCCCCCCCCCCTTTCTCTATATCTCGGTTCGGGGAGAGATGGCCCTATAGA
GAAAGAGATGGCCGAGAGATGGCCCCATCTATCTGCCCATCTAGATCTATATGCGGGCGAGCGGG
CGCCTATAGATCTAGAGGGGAGCATACTCTAGAGAGTCTCCCTCGTCCCCGAGGGGCCATATCTA
TCTCTAGGGTGCCCCCCTCTAGATCTATGGGATCTAGATATAGCCGCGGCCGAGTGCCGACTCTA
GATAGTCCCCCTCGACCCCCCTCTATCCCCCCTTCTATCCCCCGA
Right flanking sequence: Indices 320984 -- 321483
TCGAGTGGCGGGTCGGCGGGCCCATGCCCATATAGAGAGAGGGAGAGGGCGCCGCTGGCCAGGGG
GCCCTATCGGTCGATCTCCTTCACGAAGTGCAGTGAGCGGCAGCGAACTAACAGCGGGCAAATCG
GCCCGTCAGGAATCCAGCAAAACCCAGATCAAGGCGCCTGTGAGAAAGATACTCCAAAGGCTTCG
GGATCGAGGTATCATTAGCCGGAGAAGAGCCTGGCCGACCCACGTGGCCTGCTTGACGAACGTCG
GCGACGAAGACATCGTCAATCGGTTCGCGGGCGTCGCGATAAGTCTCCCGTCCCACTATAGGTGC
CGCGACAACTTCTATCAAGTCCGAACGATTGTCGACTACCAGATCCGCTGGTCCGCTATATCCAC
CCCTGCCCACAAGCACAAATCCTCGGCGCGGAAGATCATCCCGGAGTACTCGAGAGACTTACACA
TAGTCAATGGTGGTAAGACCCTTGCCGAGTCCCCCAACAGCATAG
Found at i:321616 original size:11 final size:11
Alignment explanation
Indices: 321600--321641 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
321590 TCCGCGTCCG
321600 CCACCCACCCC
1 CCACCCACCCC
*
321611 CCACCCCCCCC
1 CCACCCACCCC
321622 CCACTCC-CCCC
1 CCAC-CCACCCC
*
321633 CCCCCCACC
1 CCACCCACC
321642 TATAGATCTT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 2 0.07
11 23 0.85
12 2 0.07
ACGTcount: A:0.12, C:0.86, G:0.00, T:0.02
Consensus pattern (11 bp):
CCACCCACCCC
Left flanking sequence: Indices 321100 -- 321599
CAGCGGGCAAATCGGCCCGTCAGGAATCCAGCAAAACCCAGATCAAGGCGCCTGTGAGAAAGATA
CTCCAAAGGCTTCGGGATCGAGGTATCATTAGCCGGAGAAGAGCCTGGCCGACCCACGTGGCCTG
CTTGACGAACGTCGGCGACGAAGACATCGTCAATCGGTTCGCGGGCGTCGCGATAAGTCTCCCGT
CCCACTATAGGTGCCGCGACAACTTCTATCAAGTCCGAACGATTGTCGACTACCAGATCCGCTGG
TCCGCTATATCCACCCCTGCCCACAAGCACAAATCCTCGGCGCGGAAGATCATCCCGGAGTACTC
GAGAGACTTACACATAGTCAATGGTGGTAAGACCCTTGCCGAGTCCCCCAACAGCATAGAGCTTA
GAAAGCTTGGACCCCTTACAAGTGAAGATCTGGACTATCTAGACACGGAGCACGCGTACAAGACC
TTCTCTCAGGTGTACATACGATACGCATGAAGCGATCCGCGTCCG
Right flanking sequence: Indices 321642 -- 322141
TATAGATCTTATTGGGATTGGCCATTGGTATTGGGTTGGTATTGGTACTATCGGCCGATTGGTAT
TGGGTTGGGTCGAGGGCGCTCGATCGAGAGATCGAGGACCCTCGACCTAGACCTAAAGGAAAGGT
CGAGCCCCTCTCCCTCCTCCCCCCTGCCCCTATAGATAGATAGATAGATAGATGTCTATGGTGAG
TAGAGGCGCCGGGAGAGGGCCCCCACCTCTATAGAGATTGGGGTTGGGTTGGCGACTATAGATAG
TCGCCCCATATATAGATAGGGCCCCAACCCCATCCAATCTCCAATCTAGAGAGACCTGGGATCTG
GGCGGGCGGTCGAGAGCCTAAAGGCCCTTCGTCGGGAGAGTGCCGACTCTAGATAGTCGCCCTCG
CGCCGACCCCCCCCCCACCCCTCTCCCTCTATATGGATAGGGGATAGGGAGGCCGAGGGCATTTA
TGCTCTCGTCCGACGTCAGGTCGCCCATCCTATATAGTTGCCCTC
Found at i:321630 original size:12 final size:11
Alignment explanation
Indices: 321600--321635 Score: 54
Period size: 11 Copynumber: 3.2 Consensus size: 11
321590 TCCGCGTCCG
*
321600 CCACCCACCCC
1 CCACCCCCCCC
321611 CCACCCCCCCC
1 CCACCCCCCCC
321622 CCACTCCCCCCC
1 CCAC-CCCCCCC
321634 CC
1 CC
321636 CCCACCTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 14 0.61
12 9 0.39
ACGTcount: A:0.11, C:0.86, G:0.00, T:0.03
Consensus pattern (11 bp):
CCACCCCCCCC
Left flanking sequence: Indices 321100 -- 321599
CAGCGGGCAAATCGGCCCGTCAGGAATCCAGCAAAACCCAGATCAAGGCGCCTGTGAGAAAGATA
CTCCAAAGGCTTCGGGATCGAGGTATCATTAGCCGGAGAAGAGCCTGGCCGACCCACGTGGCCTG
CTTGACGAACGTCGGCGACGAAGACATCGTCAATCGGTTCGCGGGCGTCGCGATAAGTCTCCCGT
CCCACTATAGGTGCCGCGACAACTTCTATCAAGTCCGAACGATTGTCGACTACCAGATCCGCTGG
TCCGCTATATCCACCCCTGCCCACAAGCACAAATCCTCGGCGCGGAAGATCATCCCGGAGTACTC
GAGAGACTTACACATAGTCAATGGTGGTAAGACCCTTGCCGAGTCCCCCAACAGCATAGAGCTTA
GAAAGCTTGGACCCCTTACAAGTGAAGATCTGGACTATCTAGACACGGAGCACGCGTACAAGACC
TTCTCTCAGGTGTACATACGATACGCATGAAGCGATCCGCGTCCG
Right flanking sequence: Indices 321636 -- 322135
CCCACCTATAGATCTTATTGGGATTGGCCATTGGTATTGGGTTGGTATTGGTACTATCGGCCGAT
TGGTATTGGGTTGGGTCGAGGGCGCTCGATCGAGAGATCGAGGACCCTCGACCTAGACCTAAAGG
AAAGGTCGAGCCCCTCTCCCTCCTCCCCCCTGCCCCTATAGATAGATAGATAGATAGATGTCTAT
GGTGAGTAGAGGCGCCGGGAGAGGGCCCCCACCTCTATAGAGATTGGGGTTGGGTTGGCGACTAT
AGATAGTCGCCCCATATATAGATAGGGCCCCAACCCCATCCAATCTCCAATCTAGAGAGACCTGG
GATCTGGGCGGGCGGTCGAGAGCCTAAAGGCCCTTCGTCGGGAGAGTGCCGACTCTAGATAGTCG
CCCTCGCGCCGACCCCCCCCCCACCCCTCTCCCTCTATATGGATAGGGGATAGGGAGGCCGAGGG
CATTTATGCTCTCGTCCGACGTCAGGTCGCCCATCCTATATAGTT
Found at i:321630 original size:18 final size:17
Alignment explanation
Indices: 321603--321638 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 17
321593 GCGTCCGCCA
321603 CCCACCCCCCACCCCCCC
1 CCCACCCCCC-CCCCCCC
321621 CCCACTCCCCCCCCCCCC
1 CCCAC-CCCCCCCCCCCC
321639 ACCTATAGAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.08, C:0.89, G:0.00, T:0.03
Consensus pattern (17 bp):
CCCACCCCCCCCCCCCC
Left flanking sequence: Indices 321103 -- 321602
CGGGCAAATCGGCCCGTCAGGAATCCAGCAAAACCCAGATCAAGGCGCCTGTGAGAAAGATACTC
CAAAGGCTTCGGGATCGAGGTATCATTAGCCGGAGAAGAGCCTGGCCGACCCACGTGGCCTGCTT
GACGAACGTCGGCGACGAAGACATCGTCAATCGGTTCGCGGGCGTCGCGATAAGTCTCCCGTCCC
ACTATAGGTGCCGCGACAACTTCTATCAAGTCCGAACGATTGTCGACTACCAGATCCGCTGGTCC
GCTATATCCACCCCTGCCCACAAGCACAAATCCTCGGCGCGGAAGATCATCCCGGAGTACTCGAG
AGACTTACACATAGTCAATGGTGGTAAGACCCTTGCCGAGTCCCCCAACAGCATAGAGCTTAGAA
AGCTTGGACCCCTTACAAGTGAAGATCTGGACTATCTAGACACGGAGCACGCGTACAAGACCTTC
TCTCAGGTGTACATACGATACGCATGAAGCGATCCGCGTCCGCCA
Right flanking sequence: Indices 321639 -- 322138
ACCTATAGATCTTATTGGGATTGGCCATTGGTATTGGGTTGGTATTGGTACTATCGGCCGATTGG
TATTGGGTTGGGTCGAGGGCGCTCGATCGAGAGATCGAGGACCCTCGACCTAGACCTAAAGGAAA
GGTCGAGCCCCTCTCCCTCCTCCCCCCTGCCCCTATAGATAGATAGATAGATAGATGTCTATGGT
GAGTAGAGGCGCCGGGAGAGGGCCCCCACCTCTATAGAGATTGGGGTTGGGTTGGCGACTATAGA
TAGTCGCCCCATATATAGATAGGGCCCCAACCCCATCCAATCTCCAATCTAGAGAGACCTGGGAT
CTGGGCGGGCGGTCGAGAGCCTAAAGGCCCTTCGTCGGGAGAGTGCCGACTCTAGATAGTCGCCC
TCGCGCCGACCCCCCCCCCACCCCTCTCCCTCTATATGGATAGGGGATAGGGAGGCCGAGGGCAT
TTATGCTCTCGTCCGACGTCAGGTCGCCCATCCTATATAGTTGCC
Found at i:322279 original size:23 final size:24
Alignment explanation
Indices: 322248--322298 Score: 70
Period size: 25 Copynumber: 2.2 Consensus size: 24
322238 GGGGGGGGAG
322248 GGGGATGGGG-CC-ATCTATATAT
1 GGGGATGGGGCCCTATCTATATAT
*
322270 AGGGGTTGGGGCCCTATCTATATAT
1 -GGGGATGGGGCCCTATCTATATAT
322295 GGGG
1 GGGG
322299 CGACTATATA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
23 9 0.36
24 6 0.24
25 10 0.40
ACGTcount: A:0.20, C:0.14, G:0.39, T:0.27
Consensus pattern (24 bp):
GGGGATGGGGCCCTATCTATATAT
Left flanking sequence: Indices 321748 -- 322247
TCGACCTAGACCTAAAGGAAAGGTCGAGCCCCTCTCCCTCCTCCCCCCTGCCCCTATAGATAGAT
AGATAGATAGATGTCTATGGTGAGTAGAGGCGCCGGGAGAGGGCCCCCACCTCTATAGAGATTGG
GGTTGGGTTGGCGACTATAGATAGTCGCCCCATATATAGATAGGGCCCCAACCCCATCCAATCTC
CAATCTAGAGAGACCTGGGATCTGGGCGGGCGGTCGAGAGCCTAAAGGCCCTTCGTCGGGAGAGT
GCCGACTCTAGATAGTCGCCCTCGCGCCGACCCCCCCCCCACCCCTCTCCCTCTATATGGATAGG
GGATAGGGAGGCCGAGGGCATTTATGCTCTCGTCCGACGTCAGGTCGCCCATCCTATATAGTTGC
CCTCGACCGGTAGGGCTGGGAGAGATAGAGAATTCTCTCTATACGCAGGGGACCGCCCGCCCAGA
TCATAAGAGAGAGAGCCGAGATATAATAGAGAGGGGGGGGGGGAG
Right flanking sequence: Indices 322299 -- 322798
CGACTATATAACTCTATCTAGTCGGTATAGATAGGGGACCTGAAGAAAGGATCTATATACTCTAT
AGAGAAACCCCCATAATAGATAGGGGCCTACTCTCTACTATCTACTATATACTCTATCTATATAG
CGGATAGCTGGGGGCCCCTATCTATATAGGCCGACGGGACTCTCTATAGTTATGCTCAGGAGGAT
CTATATAGAACTGGGGCATATAGCCCTCGGCCTCCCAAGCATAGCATAAATGCCGTCGGCGCCCT
CGGCCCCATATATAGATTCTCTAGGGGCCCTCCAGAGAGAAGATAGAGAGATAGATAGGGTAGGG
GAGATAGGGGCGGGGGGAGTGTGCCTCTCCCAGCTATATCTAGTAGGCCCCCCCTCTCTATATGG
GGGAGAGAGGGGGCCCCTCTCTCTATATGGGCATAACCATAGCATATCTCAGATCTCTATATAGC
CGCCCCGGCCCCAATCCCCCTATAGATAGATGGCCCCGCTCTCCA
Found at i:322291 original size:21 final size:22
Alignment explanation
Indices: 322248--322291 Score: 54
Period size: 23 Copynumber: 2.0 Consensus size: 22
322238 GGGGGGGGAG
322248 GGGGATGGGGCCATCTATATATA
1 GGGGATGGGGCCA-CTATATATA
* *
322271 GGGGTTGGGGCC-CTATCTATA
1 GGGGATGGGGCCACTATATATA
322292 TATGGGGCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
21 8 0.42
23 11 0.58
ACGTcount: A:0.20, C:0.16, G:0.36, T:0.27
Consensus pattern (22 bp):
GGGGATGGGGCCACTATATATA
Left flanking sequence: Indices 321748 -- 322247
TCGACCTAGACCTAAAGGAAAGGTCGAGCCCCTCTCCCTCCTCCCCCCTGCCCCTATAGATAGAT
AGATAGATAGATGTCTATGGTGAGTAGAGGCGCCGGGAGAGGGCCCCCACCTCTATAGAGATTGG
GGTTGGGTTGGCGACTATAGATAGTCGCCCCATATATAGATAGGGCCCCAACCCCATCCAATCTC
CAATCTAGAGAGACCTGGGATCTGGGCGGGCGGTCGAGAGCCTAAAGGCCCTTCGTCGGGAGAGT
GCCGACTCTAGATAGTCGCCCTCGCGCCGACCCCCCCCCCACCCCTCTCCCTCTATATGGATAGG
GGATAGGGAGGCCGAGGGCATTTATGCTCTCGTCCGACGTCAGGTCGCCCATCCTATATAGTTGC
CCTCGACCGGTAGGGCTGGGAGAGATAGAGAATTCTCTCTATACGCAGGGGACCGCCCGCCCAGA
TCATAAGAGAGAGAGCCGAGATATAATAGAGAGGGGGGGGGGGAG
Right flanking sequence: Indices 322292 -- 322791
TATGGGGCGACTATATAACTCTATCTAGTCGGTATAGATAGGGGACCTGAAGAAAGGATCTATAT
ACTCTATAGAGAAACCCCCATAATAGATAGGGGCCTACTCTCTACTATCTACTATATACTCTATC
TATATAGCGGATAGCTGGGGGCCCCTATCTATATAGGCCGACGGGACTCTCTATAGTTATGCTCA
GGAGGATCTATATAGAACTGGGGCATATAGCCCTCGGCCTCCCAAGCATAGCATAAATGCCGTCG
GCGCCCTCGGCCCCATATATAGATTCTCTAGGGGCCCTCCAGAGAGAAGATAGAGAGATAGATAG
GGTAGGGGAGATAGGGGCGGGGGGAGTGTGCCTCTCCCAGCTATATCTAGTAGGCCCCCCCTCTC
TATATGGGGGAGAGAGGGGGCCCCTCTCTCTATATGGGCATAACCATAGCATATCTCAGATCTCT
ATATAGCCGCCCCGGCCCCAATCCCCCTATAGATAGATGGCCCCG
Found at i:322852 original size:1 final size:1
Alignment explanation
Indices: 322841--322881 Score: 55
Period size: 1 Copynumber: 41.0 Consensus size: 1
322831 ACCTCTATAA
* * *
322841 GGGGTGGGGGGGGGGGGTGGGGGGGGGGAGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
322882 CGGGCGCCTA
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.02, C:0.00, G:0.93, T:0.05
Consensus pattern (1 bp):
G
Left flanking sequence: Indices 322341 -- 322840
AAGAAAGGATCTATATACTCTATAGAGAAACCCCCATAATAGATAGGGGCCTACTCTCTACTATC
TACTATATACTCTATCTATATAGCGGATAGCTGGGGGCCCCTATCTATATAGGCCGACGGGACTC
TCTATAGTTATGCTCAGGAGGATCTATATAGAACTGGGGCATATAGCCCTCGGCCTCCCAAGCAT
AGCATAAATGCCGTCGGCGCCCTCGGCCCCATATATAGATTCTCTAGGGGCCCTCCAGAGAGAAG
ATAGAGAGATAGATAGGGTAGGGGAGATAGGGGCGGGGGGAGTGTGCCTCTCCCAGCTATATCTA
GTAGGCCCCCCCTCTCTATATGGGGGAGAGAGGGGGCCCCTCTCTCTATATGGGCATAACCATAG
CATATCTCAGATCTCTATATAGCCGCCCCGGCCCCAATCCCCCTATAGATAGATGGCCCCGCTCT
CCACCTATCTAGAAAGTGCCTCTCCACCTCACCCCACCTCTATAA
Right flanking sequence: Indices 322882 -- 323381
CGGGCGCCTATATGGATATAGGGGTGCCAACGAAACTAGACTCTATATAGCCCTATCGCTCACCC
CGACTATGGAGAGTCATAGTCGCCCTCGACCCAAAAGAGAGAGAGAGCGATCTCGCAGCGAGATC
ATCTATCTGGGATCTAGTAACCCGTAAGAATAAACTACGAATATCCATCCCCTACGGGAATCGAA
CCCGTGTCTTCGACATGAAAAGACGATGTCCTAACCACTAGACGAAAGGGACCCCCCTAAGGCAA
GTGAATGATGGACTCGCCGAAGAGAGAAGAATCATGTATGCCGAAGAGAGGAGAGAAGAATCATC
ATATCCGAGGGCCCCTATCCAGATATGGGGGTACTCGACGACCGGTAAGTGTAGGTGTGTTCCAT
CATAGAACAACTCGAGCTTGAGAGGCCGTGCCGCCAGCCCCCCCCCCGCCCAGATCCCCCCCCCC
CCACCCCGAACTATCTTATCTTATCCCCCCCTCTCTATATCTTTT
Found at i:322859 original size:13 final size:13
Alignment explanation
Indices: 322841--322881 Score: 66
Period size: 13 Copynumber: 3.2 Consensus size: 13
322831 ACCTCTATAA
322841 GGGGTGGGGGGGG
1 GGGGTGGGGGGGG
322854 GGGGTGGGGGGGG
1 GGGGTGGGGGGGG
322867 GGAGG-GGGGGGGG
1 GG-GGTGGGGGGGG
322880 GG
1 GG
322882 CGGGCGCCTA
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 25 0.93
14 2 0.07
ACGTcount: A:0.02, C:0.00, G:0.93, T:0.05
Consensus pattern (13 bp):
GGGGTGGGGGGGG
Left flanking sequence: Indices 322341 -- 322840
AAGAAAGGATCTATATACTCTATAGAGAAACCCCCATAATAGATAGGGGCCTACTCTCTACTATC
TACTATATACTCTATCTATATAGCGGATAGCTGGGGGCCCCTATCTATATAGGCCGACGGGACTC
TCTATAGTTATGCTCAGGAGGATCTATATAGAACTGGGGCATATAGCCCTCGGCCTCCCAAGCAT
AGCATAAATGCCGTCGGCGCCCTCGGCCCCATATATAGATTCTCTAGGGGCCCTCCAGAGAGAAG
ATAGAGAGATAGATAGGGTAGGGGAGATAGGGGCGGGGGGAGTGTGCCTCTCCCAGCTATATCTA
GTAGGCCCCCCCTCTCTATATGGGGGAGAGAGGGGGCCCCTCTCTCTATATGGGCATAACCATAG
CATATCTCAGATCTCTATATAGCCGCCCCGGCCCCAATCCCCCTATAGATAGATGGCCCCGCTCT
CCACCTATCTAGAAAGTGCCTCTCCACCTCACCCCACCTCTATAA
Right flanking sequence: Indices 322882 -- 323381
CGGGCGCCTATATGGATATAGGGGTGCCAACGAAACTAGACTCTATATAGCCCTATCGCTCACCC
CGACTATGGAGAGTCATAGTCGCCCTCGACCCAAAAGAGAGAGAGAGCGATCTCGCAGCGAGATC
ATCTATCTGGGATCTAGTAACCCGTAAGAATAAACTACGAATATCCATCCCCTACGGGAATCGAA
CCCGTGTCTTCGACATGAAAAGACGATGTCCTAACCACTAGACGAAAGGGACCCCCCTAAGGCAA
GTGAATGATGGACTCGCCGAAGAGAGAAGAATCATGTATGCCGAAGAGAGGAGAGAAGAATCATC
ATATCCGAGGGCCCCTATCCAGATATGGGGGTACTCGACGACCGGTAAGTGTAGGTGTGTTCCAT
CATAGAACAACTCGAGCTTGAGAGGCCGTGCCGCCAGCCCCCCCCCCGCCCAGATCCCCCCCCCC
CCACCCCGAACTATCTTATCTTATCCCCCCCTCTCTATATCTTTT
Found at i:324856 original size:27 final size:27
Alignment explanation
Indices: 324818--324872 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
324808 TATCTTATCC
324818 TATAGTTCTAGTTATAGATAGGGGCGG
1 TATAGTTCTAGTTATAGATAGGGGCGG
324845 TATAGTTCTAGTTATAGATAGGGGCGG
1 TATAGTTCTAGTTATAGATAGGGGCGG
324872 T
1 T
324873 CGTATCACGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.25, C:0.07, G:0.33, T:0.35
Consensus pattern (27 bp):
TATAGTTCTAGTTATAGATAGGGGCGG
Left flanking sequence: Indices 324318 -- 324817
GTAGGTGAAGAGGCAGATGATCGGCCGTCCCCAAAGGTCTGAGGGGGCCCGGCCCCTATAGATAT
AGATCTATTAGAGATCTGAGGCCCGATATGGGTGGGAGGGTATCATGGGCTGGGAGTGGGGAGCG
GTGAGGGGTCTGGCCGATCAGGGGTAACCGGATCGGCCGATGGGCTGGGGTAGGGGGGGCAGGAA
TGGGTTAAATCGGTATAACCGTATAGTCCATATAGGTCGATCGGCCTATCGGAGGTAGGGTAGAG
GGAGGTAGATCCGGTATCCATCCCTATCTCGGGCCCAGGGGGAGTGTAGGTTGATTGATCCGGGC
CTATCTAGACAGGGGGAGTGCCCCATATCTCATATAGAATAGAGGGGCCCCGGGCAATTTAGAGG
GGCTATATCTGGAGGGGGAGTATTCCGGTAGTCCCGGGGTCCCGGCATCCAAGATCTATATAGAG
GGCGTCAGTCGAGTGCCCCCACCCCCAGCCCTTCCTATCTTATCC
Right flanking sequence: Indices 324873 -- 325372
CGTATCACGTAGAGAATAGATGGATCTAGATGGATGTGTACCGATCCGGCCATCGGGTCGCCTAT
TCTATTCCATTCTATTCTCTATAGCCGCCCCAGAGAAATAAAGGGCAGGGCCCCCCTAGATCCTA
TAGTTCGGGATGGGGGCACCATATATTGTATACAGGGTGCCGAGTAAGCCCATCTAGACTATATA
GAGCCCTGCCCTATCGGAGGCCCGAGTGCCAACTCCAACTCTAGATTATTGAGCGGCCGGTCGCC
CCCTCTCTATCTATATGGCAATGATAGGGGCCCTTAAAATTTCTAGGGGCCCCGGTAATCCCATA
TAGAGAGTATAGTGGGGGGTGGGGAATGATTGATATACTCGCTCGACGAATGGATACAGAAGCTG
CCCTCCCCCTCGATCTATCGCCCCGGAGCCGACTAGACGCCGGCTCAGTGAGATGAGATTAGCCA
TATCTAGAGTGTGGGGCTCCTCCTCGATTCCCCTCTAGACTCTAT
Found at i:325898 original size:5 final size:5
Alignment explanation
Indices: 325888--325921 Score: 68
Period size: 5 Copynumber: 6.8 Consensus size: 5
325878 GTCGCCATAT
325888 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCT
1 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCT
325922 GAACTAGGAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.38, C:0.21, G:0.00, T:0.41
Consensus pattern (5 bp):
ATCTA
Left flanking sequence: Indices 325388 -- 325887
TATCTCCCGAATCATCAAAGTACACGAGCATTGCATTGATGAGCAGAGGAAGCGCCCATCTCTCT
GCCCATCTATCTAGATGCCTATATATATAGATAGGGGACGGTAGCGAACCATTGAACCGCCTAGG
CCTAGAATTTCTCTACCGGGGCACCGCAGCAGTTCTATCTCTATAGGGCCGGGCCGGTCTAGATG
GGGTGGGGGTTGGTTCCGAAGCGTCCGAAGCGGTGCGGTGATTCAATGGGTTTATTCCGGTGATT
CAATCAGAGCTCATTCCGGCGGCCCCATATCGTCATAGGGAGATAGGGCCATCAAAGCGACCACG
GGCCAATATCTAGATTTCGGGGCGGGGGGTGGATGGGTTTTAGTTTTCTTAGTGGACCACGAGCT
ATGGGGTCGAGTCCCCCCCCCCCTCCAGATAGAGAATTCTAGATAGGGGCCCCCCTATATATATA
TATATATATAGAACTGGGAGTTCAGGGCCCCAGGGGTCGCCATAT
Right flanking sequence: Indices 325922 -- 326421
GAACTAGGAGGGGGGGTTGGGGCCTCTCGTTTAGTCTCTGGAATAGAGAGGTGGGTCGCCAATGA
TATAGCTAGAGGGGCCCTCCATCTAGATTAGATTCTGGGGGGAGGGATATCTAGCTAATCGGGGG
CGGGGCGCCGGTGCCTATCCGACAGCTATATATTGGGGAGGGGGGGACGGCCGGGACGAGAGGGG
AGGCCCCCCCATCTAGAGAGAAGAGGGCACACGGGCGAGACGGTCGGACATCTATAGAGTAGAGG
GGGACACGGCCCGCTTGATTGTTGGGACGCTATATAGATTCTATTTCAGATTCGGGGCTTCTGTT
CTATAGATAGGGCCGTCGAGGGGACACGAGCCACTTTCCAGTCTATCCTCACCGCCCTATAGAGA
GAGAGGGGCGGGCTCCCGAGCCCTTCATCCACATAGAGAGATAGGGGGCCGCCCCCCGCACACCG
CCCGCCCATTCGGTTATTCCCCCCGGCGCCGGCCCGGAGGCAGGG
Found at i:327506 original size:12 final size:12
Alignment explanation
Indices: 327489--327565 Score: 84
Period size: 12 Copynumber: 6.3 Consensus size: 12
327479 CAATATAGTC
327489 GAGATATAGAGA
1 GAGATATAGAGA
*
327501 GAGATATAGATA
1 GAGATATAGAGA
* *
327513 TAGAGTGA-AGATA
1 GAGA-T-ATAGAGA
327526 GAGATATAGAGA
1 GAGATATAGAGA
*
327538 TAGATATAGAGA
1 GAGATATAGAGA
*
327550 GAGATAGAGAGA
1 GAGATATAGAGA
327562 GAGA
1 GAGA
327566 GACTGAAGAG
Statistics
Matches: 55, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
11 1 0.02
12 44 0.80
13 9 0.16
14 1 0.02
ACGTcount: A:0.49, C:0.00, G:0.32, T:0.18
Consensus pattern (12 bp):
GAGATATAGAGA
Left flanking sequence: Indices 326989 -- 327488
TCCCCGATCGGGGGCTCTCTATTATATCCTTATCTTCTATGGTTTGGGAGCCCTATCCCCCTATC
TAAATCTCTAGTTCGGGGTGGGGGGGATCTGGCGGCCCCCCTATAGAGAGAATTGGCCCCGGTTG
GCCCGGGCCCCATCTAGAGAGATTTGGGATCTGGGACGAGAAATTAAAGATTGGATGGTTTCCAA
ACTAGATGGTTGTTGGTTGCCCAGATAAGAGATAGGGCCTCTTCAGTTCCAAACCACCCATATAT
AGATTAGATAGGGGTCGAGGGATATGGATATCTAGATATAGATATCTGCTGATCGGAGACCAGAC
CTAAAGGGGAAAGGTAAAACCATCTCTGGGAAAGCGGGTTCGCTGTTTGTGAAACACCGATGCGA
GAACTAGGAGGTATAGGAGATAGTGAGTAGCGGAGTGTTGAGTGGGTCAGGTGCTCCCTGCCACC
TTTTAGGACTTAAGCTTGTGTGGCAGATGGGCAATCAATATAGTC
Right flanking sequence: Indices 327566 -- 328065
GACTGAAGAGTGAGTCGAGATATAGAGAGAGATATATATCTGAGAGAGATATATATCTGAGAGAG
ATATAGAAGAGACTGAAGAGTGAAGAGTTCAGAGTTCAGATATAGAGTTCAGAGTTCAGATATAT
ATAGAGAGAGATATAGATATCTATCTTATATAGGAGAGAGCAGAAATGGAGTCAGTCTGCCCCCC
ATAGACATAGAACCCATATAGAGAGAAGGGGGGCTCCTCAGAATGACAGTCTATCGCCCTATCTA
TATATGGGAGTTGGGAGTCCTCAACCCTGCACTACCCATTGAACCCCCTCTCTATCTATATGGGG
CCCTCTATAGAACTATATGGGGACGGGAATCACTAACTGGAATCTAGGTCTGTAACTATAGAATA
GAGAATAGAGTTCAGGCCTATCGCCTAGCCTATCTATTCCCCTGATTCCTTCATCCCCTGATTCT
GATTCATAGCTTGCTTCAGACCACCAGGGATTCCTCACCAGATGA
Found at i:327513 original size:6 final size:6
Alignment explanation
Indices: 327490--327547 Score: 55
Period size: 6 Copynumber: 9.5 Consensus size: 6
327480 AATATAGTCG
* * * *
327490 AGATAT AGAGAG AGATAT AGATAT AGAGTGA- AGATAG AGATAT AGAGAT
1 AGATAT AGATAT AGATAT AGATAT AGA-T-AT AGATAT AGATAT AGATAT
327539 AGATAT AGA
1 AGATAT AGA
327548 GAGAGATAGA
Statistics
Matches: 42, Mismatches: 7, Indels: 6
0.76 0.13 0.11
Matches are distributed among these distances:
5 1 0.02
6 36 0.86
7 4 0.10
8 1 0.02
ACGTcount: A:0.50, C:0.00, G:0.28, T:0.22
Consensus pattern (6 bp):
AGATAT
Left flanking sequence: Indices 326990 -- 327489
CCCCGATCGGGGGCTCTCTATTATATCCTTATCTTCTATGGTTTGGGAGCCCTATCCCCCTATCT
AAATCTCTAGTTCGGGGTGGGGGGGATCTGGCGGCCCCCCTATAGAGAGAATTGGCCCCGGTTGG
CCCGGGCCCCATCTAGAGAGATTTGGGATCTGGGACGAGAAATTAAAGATTGGATGGTTTCCAAA
CTAGATGGTTGTTGGTTGCCCAGATAAGAGATAGGGCCTCTTCAGTTCCAAACCACCCATATATA
GATTAGATAGGGGTCGAGGGATATGGATATCTAGATATAGATATCTGCTGATCGGAGACCAGACC
TAAAGGGGAAAGGTAAAACCATCTCTGGGAAAGCGGGTTCGCTGTTTGTGAAACACCGATGCGAG
AACTAGGAGGTATAGGAGATAGTGAGTAGCGGAGTGTTGAGTGGGTCAGGTGCTCCCTGCCACCT
TTTAGGACTTAAGCTTGTGTGGCAGATGGGCAATCAATATAGTCG
Right flanking sequence: Indices 327548 -- 328047
GAGAGATAGAGAGAGAGAGACTGAAGAGTGAGTCGAGATATAGAGAGAGATATATATCTGAGAGA
GATATATATCTGAGAGAGATATAGAAGAGACTGAAGAGTGAAGAGTTCAGAGTTCAGATATAGAG
TTCAGAGTTCAGATATATATAGAGAGAGATATAGATATCTATCTTATATAGGAGAGAGCAGAAAT
GGAGTCAGTCTGCCCCCCATAGACATAGAACCCATATAGAGAGAAGGGGGGCTCCTCAGAATGAC
AGTCTATCGCCCTATCTATATATGGGAGTTGGGAGTCCTCAACCCTGCACTACCCATTGAACCCC
CTCTCTATCTATATGGGGCCCTCTATAGAACTATATGGGGACGGGAATCACTAACTGGAATCTAG
GTCTGTAACTATAGAATAGAGAATAGAGTTCAGGCCTATCGCCTAGCCTATCTATTCCCCTGATT
CCTTCATCCCCTGATTCTGATTCATAGCTTGCTTCAGACCACCAG
Found at i:327610 original size:17 final size:17
Alignment explanation
Indices: 327590--327635 Score: 92
Period size: 17 Copynumber: 2.7 Consensus size: 17
327580 TCGAGATATA
327590 GAGAGAGATATATATCT
1 GAGAGAGATATATATCT
327607 GAGAGAGATATATATCT
1 GAGAGAGATATATATCT
327624 GAGAGAGATATA
1 GAGAGAGATATA
327636 GAAGAGACTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.43, C:0.04, G:0.26, T:0.26
Consensus pattern (17 bp):
GAGAGAGATATATATCT
Left flanking sequence: Indices 327090 -- 327589
CCCCCTATAGAGAGAATTGGCCCCGGTTGGCCCGGGCCCCATCTAGAGAGATTTGGGATCTGGGA
CGAGAAATTAAAGATTGGATGGTTTCCAAACTAGATGGTTGTTGGTTGCCCAGATAAGAGATAGG
GCCTCTTCAGTTCCAAACCACCCATATATAGATTAGATAGGGGTCGAGGGATATGGATATCTAGA
TATAGATATCTGCTGATCGGAGACCAGACCTAAAGGGGAAAGGTAAAACCATCTCTGGGAAAGCG
GGTTCGCTGTTTGTGAAACACCGATGCGAGAACTAGGAGGTATAGGAGATAGTGAGTAGCGGAGT
GTTGAGTGGGTCAGGTGCTCCCTGCCACCTTTTAGGACTTAAGCTTGTGTGGCAGATGGGCAATC
AATATAGTCGAGATATAGAGAGAGATATAGATATAGAGTGAAGATAGAGATATAGAGATAGATAT
AGAGAGAGATAGAGAGAGAGAGACTGAAGAGTGAGTCGAGATATA
Right flanking sequence: Indices 327636 -- 328135
GAAGAGACTGAAGAGTGAAGAGTTCAGAGTTCAGATATAGAGTTCAGAGTTCAGATATATATAGA
GAGAGATATAGATATCTATCTTATATAGGAGAGAGCAGAAATGGAGTCAGTCTGCCCCCCATAGA
CATAGAACCCATATAGAGAGAAGGGGGGCTCCTCAGAATGACAGTCTATCGCCCTATCTATATAT
GGGAGTTGGGAGTCCTCAACCCTGCACTACCCATTGAACCCCCTCTCTATCTATATGGGGCCCTC
TATAGAACTATATGGGGACGGGAATCACTAACTGGAATCTAGGTCTGTAACTATAGAATAGAGAA
TAGAGTTCAGGCCTATCGCCTAGCCTATCTATTCCCCTGATTCCTTCATCCCCTGATTCTGATTC
ATAGCTTGCTTCAGACCACCAGGGATTCCTCACCAGATGAAGCTGGAGGAGATAAAGCTGGAGGC
ACCGGAGATTCCGGATGGATAGAGCTGGAGGGAAGCGAAAACGGA
Found at i:327664 original size:7 final size:7
Alignment explanation
Indices: 327654--327690 Score: 51
Period size: 7 Copynumber: 5.4 Consensus size: 7
327644 TGAAGAGTGA
327654 AGAGTTC
1 AGAGTTC
327661 AGAGTTC
1 AGAGTTC
327668 AGA-TAT-
1 AGAGT-TC
327674 AGAGTTC
1 AGAGTTC
327681 AGAGTTC
1 AGAGTTC
327688 AGA
1 AGA
327691 TATATATAGA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
6 5 0.19
7 22 0.81
ACGTcount: A:0.35, C:0.11, G:0.27, T:0.27
Consensus pattern (7 bp):
AGAGTTC
Left flanking sequence: Indices 327154 -- 327653
ACGAGAAATTAAAGATTGGATGGTTTCCAAACTAGATGGTTGTTGGTTGCCCAGATAAGAGATAG
GGCCTCTTCAGTTCCAAACCACCCATATATAGATTAGATAGGGGTCGAGGGATATGGATATCTAG
ATATAGATATCTGCTGATCGGAGACCAGACCTAAAGGGGAAAGGTAAAACCATCTCTGGGAAAGC
GGGTTCGCTGTTTGTGAAACACCGATGCGAGAACTAGGAGGTATAGGAGATAGTGAGTAGCGGAG
TGTTGAGTGGGTCAGGTGCTCCCTGCCACCTTTTAGGACTTAAGCTTGTGTGGCAGATGGGCAAT
CAATATAGTCGAGATATAGAGAGAGATATAGATATAGAGTGAAGATAGAGATATAGAGATAGATA
TAGAGAGAGATAGAGAGAGAGAGACTGAAGAGTGAGTCGAGATATAGAGAGAGATATATATCTGA
GAGAGATATATATCTGAGAGAGATATAGAAGAGACTGAAGAGTGA
Right flanking sequence: Indices 327691 -- 328190
TATATATAGAGAGAGATATAGATATCTATCTTATATAGGAGAGAGCAGAAATGGAGTCAGTCTGC
CCCCCATAGACATAGAACCCATATAGAGAGAAGGGGGGCTCCTCAGAATGACAGTCTATCGCCCT
ATCTATATATGGGAGTTGGGAGTCCTCAACCCTGCACTACCCATTGAACCCCCTCTCTATCTATA
TGGGGCCCTCTATAGAACTATATGGGGACGGGAATCACTAACTGGAATCTAGGTCTGTAACTATA
GAATAGAGAATAGAGTTCAGGCCTATCGCCTAGCCTATCTATTCCCCTGATTCCTTCATCCCCTG
ATTCTGATTCATAGCTTGCTTCAGACCACCAGGGATTCCTCACCAGATGAAGCTGGAGGAGATAA
AGCTGGAGGCACCGGAGATTCCGGATGGATAGAGCTGGAGGGAAGCGAAAACGGAATAAGGAAGA
GAAGCTCGGGTACGCCGGTTGGAGATCGGTATGATCTAACCTAAT
Found at i:327679 original size:20 final size:20
Alignment explanation
Indices: 327654--327694 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
327644 TGAAGAGTGA
327654 AGAGTTCAGAGTTCAGATAT
1 AGAGTTCAGAGTTCAGATAT
327674 AGAGTTCAGAGTTCAGATAT
1 AGAGTTCAGAGTTCAGATAT
327694 A
1 A
327695 TATAGAGAGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.37, C:0.10, G:0.24, T:0.29
Consensus pattern (20 bp):
AGAGTTCAGAGTTCAGATAT
Left flanking sequence: Indices 327154 -- 327653
ACGAGAAATTAAAGATTGGATGGTTTCCAAACTAGATGGTTGTTGGTTGCCCAGATAAGAGATAG
GGCCTCTTCAGTTCCAAACCACCCATATATAGATTAGATAGGGGTCGAGGGATATGGATATCTAG
ATATAGATATCTGCTGATCGGAGACCAGACCTAAAGGGGAAAGGTAAAACCATCTCTGGGAAAGC
GGGTTCGCTGTTTGTGAAACACCGATGCGAGAACTAGGAGGTATAGGAGATAGTGAGTAGCGGAG
TGTTGAGTGGGTCAGGTGCTCCCTGCCACCTTTTAGGACTTAAGCTTGTGTGGCAGATGGGCAAT
CAATATAGTCGAGATATAGAGAGAGATATAGATATAGAGTGAAGATAGAGATATAGAGATAGATA
TAGAGAGAGATAGAGAGAGAGAGACTGAAGAGTGAGTCGAGATATAGAGAGAGATATATATCTGA
GAGAGATATATATCTGAGAGAGATATAGAAGAGACTGAAGAGTGA
Right flanking sequence: Indices 327695 -- 328194
TATAGAGAGAGATATAGATATCTATCTTATATAGGAGAGAGCAGAAATGGAGTCAGTCTGCCCCC
CATAGACATAGAACCCATATAGAGAGAAGGGGGGCTCCTCAGAATGACAGTCTATCGCCCTATCT
ATATATGGGAGTTGGGAGTCCTCAACCCTGCACTACCCATTGAACCCCCTCTCTATCTATATGGG
GCCCTCTATAGAACTATATGGGGACGGGAATCACTAACTGGAATCTAGGTCTGTAACTATAGAAT
AGAGAATAGAGTTCAGGCCTATCGCCTAGCCTATCTATTCCCCTGATTCCTTCATCCCCTGATTC
TGATTCATAGCTTGCTTCAGACCACCAGGGATTCCTCACCAGATGAAGCTGGAGGAGATAAAGCT
GGAGGCACCGGAGATTCCGGATGGATAGAGCTGGAGGGAAGCGAAAACGGAATAAGGAAGAGAAG
CTCGGGTACGCCGGTTGGAGATCGGTATGATCTAACCTAATCCAG
Found at i:328083 original size:15 final size:15
Alignment explanation
Indices: 328060--328089 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
328050 ATTCCTCACC
*
328060 AGATGAAGCTGGAGG
1 AGATAAAGCTGGAGG
328075 AGATAAAGCTGGAGG
1 AGATAAAGCTGGAGG
328090 CACCGGAGAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.07, G:0.43, T:0.13
Consensus pattern (15 bp):
AGATAAAGCTGGAGG
Left flanking sequence: Indices 327560 -- 328059
GAGAGAGACTGAAGAGTGAGTCGAGATATAGAGAGAGATATATATCTGAGAGAGATATATATCTG
AGAGAGATATAGAAGAGACTGAAGAGTGAAGAGTTCAGAGTTCAGATATAGAGTTCAGAGTTCAG
ATATATATAGAGAGAGATATAGATATCTATCTTATATAGGAGAGAGCAGAAATGGAGTCAGTCTG
CCCCCCATAGACATAGAACCCATATAGAGAGAAGGGGGGCTCCTCAGAATGACAGTCTATCGCCC
TATCTATATATGGGAGTTGGGAGTCCTCAACCCTGCACTACCCATTGAACCCCCTCTCTATCTAT
ATGGGGCCCTCTATAGAACTATATGGGGACGGGAATCACTAACTGGAATCTAGGTCTGTAACTAT
AGAATAGAGAATAGAGTTCAGGCCTATCGCCTAGCCTATCTATTCCCCTGATTCCTTCATCCCCT
GATTCTGATTCATAGCTTGCTTCAGACCACCAGGGATTCCTCACC
Right flanking sequence: Indices 328090 -- 328589
CACCGGAGATTCCGGATGGATAGAGCTGGAGGGAAGCGAAAACGGAATAAGGAAGAGAAGCTCGG
GTACGCCGGTTGGAGATCGGTATGATCTAACCTAATCCAGATATTCCATAAGGCACTCGATCAGA
TCAGCAAATGCCCTATAGATCTATATGGTGGCCTATATAGATACAGGGCCGGGGTCAAGATCAAC
AAATCGGCTCGGCTCAATATATCTTATCTCGGATCGGGGTGCCCCTCTCTAATCTCTATATAGGG
GGGGGCCAGATGCAAAAGTAGCCTCCTCCCCCCTCTATCTCTATATGGATAGGGGATCCTCCCCC
CTCCATAGAATCTAGGGGAGCCCCCCTTCTCTCTATATGGGTTCTATGTCTATGGGGGGCCCCTA
CCCTAGAAATAATCTGCTACTCTATAGAGGGGCCCCCTCCCCCTCCGGATCGGGTGAAAGGGGAA
GGGGCAGCTCTCTATCCCCCAGATCTCTATATAGGTTCTGGGGGA
Found at i:328838 original size:2 final size:2
Alignment explanation
Indices: 328831--328866 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
328821 CTATCTGCCC
328831 AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
328867 GGGGGGCCGC
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 32 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Left flanking sequence: Indices 328331 -- 328830
CTCTAATCTCTATATAGGGGGGGGCCAGATGCAAAAGTAGCCTCCTCCCCCCTCTATCTCTATAT
GGATAGGGGATCCTCCCCCCTCCATAGAATCTAGGGGAGCCCCCCTTCTCTCTATATGGGTTCTA
TGTCTATGGGGGGCCCCTACCCTAGAAATAATCTGCTACTCTATAGAGGGGCCCCCTCCCCCTCC
GGATCGGGTGAAAGGGGAAGGGGCAGCTCTCTATCCCCCAGATCTCTATATAGGTTCTGGGGGAT
AATTCTCGGGGGGCCTTACTCGATTGACCCTATATATCTATCTGCCATATCTACAATCTCTATAG
GAGGGGGGGGGGGGGTGAGCGGAGCCCCCTATCTAGATCCCCCTACCCTCTAATATAGATTCTAT
AGGTGGAAGGTGGGTATGTATATAGTTTCATTGGCACTCGCCCCCCCTCTCTCTATATGGGAACT
ATAGGGTCTTGCCCCGGCTCTATATCTTATCATATCTATCTGCCC
Right flanking sequence: Indices 328867 -- 329366
GGGGGGCCGCCCTCCCCGGGCCTCGGCCGACGTTGATCGGGGCTCGGCCAGTTGATCGCCCTATC
TATATATCTGGGGACCCCCCTATATAGATAATAGATATATGGCAGTTACTGCATCTGCCCCGCCC
TATAGATCTATCTAGGCTGGGGGCCCGCATGCACGACTATCCATAGCTCATCCGGGTATCATAAG
GGCATAGGGAATCCGATGTATAGGCATATGCTGCATCCGGCTCCGGCAATCGATCAATCGGCATG
CATCCGGGACTCGACTTATCAATAGGGCATCGGCATGCATCCGCCGGCTCGACCCCTATACTTAT
CAATAGGGCATCGGCATGCATCCGCCGGCTCGACCTTCACTTCTGCATCCGGCCCTATATAGAGA
ACTGGGGCTCGACTCGACCGACCCCTATCCATATAGATATGGGGCGACTATCTATAATGCACTTC
AATAGATCCCCGGCGAGGGCGACTATCTCTAAGTCGGGTCGGGCC
Found at i:328922 original size:19 final size:21
Alignment explanation
Indices: 328883--328924 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
328873 CCGCCCTCCC
328883 CGGGCCTCGGCCGACGTTGAT
1 CGGGCCTCGGCCGACGTTGAT
*
328904 CGGGGCTCGGCC-A-GTTGAT
1 CGGGCCTCGGCCGACGTTGAT
328923 CG
1 CG
328925 CCCTATCTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 8 0.40
20 1 0.05
21 11 0.55
ACGTcount: A:0.10, C:0.31, G:0.40, T:0.19
Consensus pattern (21 bp):
CGGGCCTCGGCCGACGTTGAT
Left flanking sequence: Indices 328383 -- 328882
TCTATCTCTATATGGATAGGGGATCCTCCCCCCTCCATAGAATCTAGGGGAGCCCCCCTTCTCTC
TATATGGGTTCTATGTCTATGGGGGGCCCCTACCCTAGAAATAATCTGCTACTCTATAGAGGGGC
CCCCTCCCCCTCCGGATCGGGTGAAAGGGGAAGGGGCAGCTCTCTATCCCCCAGATCTCTATATA
GGTTCTGGGGGATAATTCTCGGGGGGCCTTACTCGATTGACCCTATATATCTATCTGCCATATCT
ACAATCTCTATAGGAGGGGGGGGGGGGGTGAGCGGAGCCCCCTATCTAGATCCCCCTACCCTCTA
ATATAGATTCTATAGGTGGAAGGTGGGTATGTATATAGTTTCATTGGCACTCGCCCCCCCTCTCT
CTATATGGGAACTATAGGGTCTTGCCCCGGCTCTATATCTTATCATATCTATCTGCCCATATATA
TATATATATATATATTATATATATATATAGGGGGGCCGCCCTCCC
Right flanking sequence: Indices 328925 -- 329424
CCCTATCTATATATCTGGGGACCCCCCTATATAGATAATAGATATATGGCAGTTACTGCATCTGC
CCCGCCCTATAGATCTATCTAGGCTGGGGGCCCGCATGCACGACTATCCATAGCTCATCCGGGTA
TCATAAGGGCATAGGGAATCCGATGTATAGGCATATGCTGCATCCGGCTCCGGCAATCGATCAAT
CGGCATGCATCCGGGACTCGACTTATCAATAGGGCATCGGCATGCATCCGCCGGCTCGACCCCTA
TACTTATCAATAGGGCATCGGCATGCATCCGCCGGCTCGACCTTCACTTCTGCATCCGGCCCTAT
ATAGAGAACTGGGGCTCGACTCGACCGACCCCTATCCATATAGATATGGGGCGACTATCTATAAT
GCACTTCAATAGATCCCCGGCGAGGGCGACTATCTCTAAGTCGGGTCGGGCCGGGCCCCCCTATC
TCTATCTGGGGTCCGACCCCTATCCATGGATATGGGAGGCCTATC
Found at i:329556 original size:13 final size:13
Alignment explanation
Indices: 329529--329563 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
329519 CTCTATTTTC
329529 TCCGGA-GGG-TA
1 TCCGGAGGGGCTA
329540 TCCGGAGGGGCTA
1 TCCGGAGGGGCTA
329553 TCCGGAGGGGC
1 TCCGGAGGGGC
329564 GGGCCCCCTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 6 0.27
12 3 0.14
13 13 0.59
ACGTcount: A:0.14, C:0.23, G:0.49, T:0.14
Consensus pattern (13 bp):
TCCGGAGGGGCTA
Left flanking sequence: Indices 329029 -- 329528
ACGACTATCCATAGCTCATCCGGGTATCATAAGGGCATAGGGAATCCGATGTATAGGCATATGCT
GCATCCGGCTCCGGCAATCGATCAATCGGCATGCATCCGGGACTCGACTTATCAATAGGGCATCG
GCATGCATCCGCCGGCTCGACCCCTATACTTATCAATAGGGCATCGGCATGCATCCGCCGGCTCG
ACCTTCACTTCTGCATCCGGCCCTATATAGAGAACTGGGGCTCGACTCGACCGACCCCTATCCAT
ATAGATATGGGGCGACTATCTATAATGCACTTCAATAGATCCCCGGCGAGGGCGACTATCTCTAA
GTCGGGTCGGGCCGGGCCCCCCTATCTCTATCTGGGGTCCGACCCCTATCCATGGATATGGGAGG
CCTATCTATATATGGGGGCGGCTAGCGGCTATATATATAGATCTAGTTGGCCCCCCTATCTATAT
CTGGGCCCGCCCCTCCGGAGACCCTCCGGATACCCCTCTATTTTC
Right flanking sequence: Indices 329564 -- 330063
GGGCCCCCTATCTATATATGGTGCTCCCGGCACTATCTATATATGGCGATAGCCATAGAGATCTA
TAGGGGCCCCCTATCTATATATGGGGTACTCAGATAGAGTTGGTGGGGCCCCCCTAGAGAGAGAT
CTGGCTATCTGGGTCCCCGGCCAGCGGGAGAGGAGGGACTCGTCCGGTAGGACGAGGGCCCGGCT
CCCCGATAGGCGCCCGCCCCGCCCAGATAGATAGTTCAGGGCAGATAGATGGGGCAGATAGATAG
ATGGGGCAGATAGATGGGGCAGATAGATAGATCTATATAGGGCCGCCTTTACTACTACTACAAAG
TAAAGTTGGAGTTGGGCCCCCATATCATATATATCTATATTGATTCTCGCTAGGCCTATAGTCTA
TAGCCTGACCCGGATTATGGATATTGACAGGACCGGCCAAACAGAGTAGACCGCCCCCTCTATAT
ATGCGTAGCGCCCCTATCTGTATATATACGTCCCGGATCGGGGGA
Found at i:329815 original size:13 final size:13
Alignment explanation
Indices: 329797--329851 Score: 74
Period size: 13 Copynumber: 3.9 Consensus size: 13
329787 AGATAGTTCA
329797 GGGCAGATAGATG
1 GGGCAGATAGATG
329810 GGGCAGATAGATAGATG
1 GGGC----AGATAGATG
329827 GGGCAGATAGATG
1 GGGCAGATAGATG
329840 GGGCAGATAGAT
1 GGGCAGATAGAT
329852 AGATCTATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
13 25 0.66
17 13 0.34
ACGTcount: A:0.33, C:0.07, G:0.44, T:0.16
Consensus pattern (13 bp):
GGGCAGATAGATG
Left flanking sequence: Indices 329297 -- 329796
GGGGCGACTATCTATAATGCACTTCAATAGATCCCCGGCGAGGGCGACTATCTCTAAGTCGGGTC
GGGCCGGGCCCCCCTATCTCTATCTGGGGTCCGACCCCTATCCATGGATATGGGAGGCCTATCTA
TATATGGGGGCGGCTAGCGGCTATATATATAGATCTAGTTGGCCCCCCTATCTATATCTGGGCCC
GCCCCTCCGGAGACCCTCCGGATACCCCTCTATTTTCTCCGGAGGGTATCCGGAGGGGCTATCCG
GAGGGGCGGGCCCCCTATCTATATATGGTGCTCCCGGCACTATCTATATATGGCGATAGCCATAG
AGATCTATAGGGGCCCCCTATCTATATATGGGGTACTCAGATAGAGTTGGTGGGGCCCCCCTAGA
GAGAGATCTGGCTATCTGGGTCCCCGGCCAGCGGGAGAGGAGGGACTCGTCCGGTAGGACGAGGG
CCCGGCTCCCCGATAGGCGCCCGCCCCGCCCAGATAGATAGTTCA
Right flanking sequence: Indices 329852 -- 330351
AGATCTATATAGGGCCGCCTTTACTACTACTACAAAGTAAAGTTGGAGTTGGGCCCCCATATCAT
ATATATCTATATTGATTCTCGCTAGGCCTATAGTCTATAGCCTGACCCGGATTATGGATATTGAC
AGGACCGGCCAAACAGAGTAGACCGCCCCCTCTATATATGCGTAGCGCCCCTATCTGTATATATA
CGTCCCGGATCGGGGGACCGGCCAAACAGATATTCTGTAGACCGGCCCTATATCTATATCTGTCT
CTAGATTCGGTTCGGGATGCCGGGGGACACCCAGTTTCTGGATATAGGGGCGCCCATATCTAAAC
ATAGGGGGAAGAAAGAAGTTTTTTTCGGGGCAGATATATCCTATCGCCATATAGAGTATAGTAGT
ATAGTAGGAAGTCCAGATAGAATAGAGAGGGCCGGGATCAAACAGTAGGAAGTCCATTTAACCTA
CCCAGATAGCCCTCTCTATTCTATCTGGTCAGATCTCTAGGCCCT
Found at i:329823 original size:17 final size:17
Alignment explanation
Indices: 329801--329855 Score: 82
Period size: 17 Copynumber: 3.5 Consensus size: 17
329791 AGTTCAGGGC
329801 AGATAGATGGGGCAGAT
1 AGATAGATGGGGCAGAT
329818 AGATAGATGGGGC----
1 AGATAGATGGGGCAGAT
329831 AGATAGATGGGGCAGAT
1 AGATAGATGGGGCAGAT
329848 AGATAGAT
1 AGATAGAT
329856 CTATATAGGG
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
13 13 0.38
17 21 0.62
ACGTcount: A:0.36, C:0.05, G:0.40, T:0.18
Consensus pattern (17 bp):
AGATAGATGGGGCAGAT
Left flanking sequence: Indices 329301 -- 329800
CGACTATCTATAATGCACTTCAATAGATCCCCGGCGAGGGCGACTATCTCTAAGTCGGGTCGGGC
CGGGCCCCCCTATCTCTATCTGGGGTCCGACCCCTATCCATGGATATGGGAGGCCTATCTATATA
TGGGGGCGGCTAGCGGCTATATATATAGATCTAGTTGGCCCCCCTATCTATATCTGGGCCCGCCC
CTCCGGAGACCCTCCGGATACCCCTCTATTTTCTCCGGAGGGTATCCGGAGGGGCTATCCGGAGG
GGCGGGCCCCCTATCTATATATGGTGCTCCCGGCACTATCTATATATGGCGATAGCCATAGAGAT
CTATAGGGGCCCCCTATCTATATATGGGGTACTCAGATAGAGTTGGTGGGGCCCCCCTAGAGAGA
GATCTGGCTATCTGGGTCCCCGGCCAGCGGGAGAGGAGGGACTCGTCCGGTAGGACGAGGGCCCG
GCTCCCCGATAGGCGCCCGCCCCGCCCAGATAGATAGTTCAGGGC
Right flanking sequence: Indices 329856 -- 330355
CTATATAGGGCCGCCTTTACTACTACTACAAAGTAAAGTTGGAGTTGGGCCCCCATATCATATAT
ATCTATATTGATTCTCGCTAGGCCTATAGTCTATAGCCTGACCCGGATTATGGATATTGACAGGA
CCGGCCAAACAGAGTAGACCGCCCCCTCTATATATGCGTAGCGCCCCTATCTGTATATATACGTC
CCGGATCGGGGGACCGGCCAAACAGATATTCTGTAGACCGGCCCTATATCTATATCTGTCTCTAG
ATTCGGTTCGGGATGCCGGGGGACACCCAGTTTCTGGATATAGGGGCGCCCATATCTAAACATAG
GGGGAAGAAAGAAGTTTTTTTCGGGGCAGATATATCCTATCGCCATATAGAGTATAGTAGTATAG
TAGGAAGTCCAGATAGAATAGAGAGGGCCGGGATCAAACAGTAGGAAGTCCATTTAACCTACCCA
GATAGCCCTCTCTATTCTATCTGGTCAGATCTCTAGGCCCTATAT
Found at i:329833 original size:30 final size:31
Alignment explanation
Indices: 329782--329856 Score: 125
Period size: 30 Copynumber: 2.5 Consensus size: 31
329772 CCGCCCCGCC
*
329782 CAGATAGATAGTTCAGGGCAGATAGATGGGG
1 CAGATAGATAGATCAGGGCAGATAGATGGGG
*
329813 CAGATAGATAGAT-GGGGCAGATAGATGGGG
1 CAGATAGATAGATCAGGGCAGATAGATGGGG
329843 CAGATAGATAGATC
1 CAGATAGATAGATC
329857 TATATAGGGC
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
30 29 0.71
31 12 0.29
ACGTcount: A:0.35, C:0.09, G:0.37, T:0.19
Consensus pattern (31 bp):
CAGATAGATAGATCAGGGCAGATAGATGGGG
Left flanking sequence: Indices 329282 -- 329781
TATCCATATAGATATGGGGCGACTATCTATAATGCACTTCAATAGATCCCCGGCGAGGGCGACTA
TCTCTAAGTCGGGTCGGGCCGGGCCCCCCTATCTCTATCTGGGGTCCGACCCCTATCCATGGATA
TGGGAGGCCTATCTATATATGGGGGCGGCTAGCGGCTATATATATAGATCTAGTTGGCCCCCCTA
TCTATATCTGGGCCCGCCCCTCCGGAGACCCTCCGGATACCCCTCTATTTTCTCCGGAGGGTATC
CGGAGGGGCTATCCGGAGGGGCGGGCCCCCTATCTATATATGGTGCTCCCGGCACTATCTATATA
TGGCGATAGCCATAGAGATCTATAGGGGCCCCCTATCTATATATGGGGTACTCAGATAGAGTTGG
TGGGGCCCCCCTAGAGAGAGATCTGGCTATCTGGGTCCCCGGCCAGCGGGAGAGGAGGGACTCGT
CCGGTAGGACGAGGGCCCGGCTCCCCGATAGGCGCCCGCCCCGCC
Right flanking sequence: Indices 329857 -- 330356
TATATAGGGCCGCCTTTACTACTACTACAAAGTAAAGTTGGAGTTGGGCCCCCATATCATATATA
TCTATATTGATTCTCGCTAGGCCTATAGTCTATAGCCTGACCCGGATTATGGATATTGACAGGAC
CGGCCAAACAGAGTAGACCGCCCCCTCTATATATGCGTAGCGCCCCTATCTGTATATATACGTCC
CGGATCGGGGGACCGGCCAAACAGATATTCTGTAGACCGGCCCTATATCTATATCTGTCTCTAGA
TTCGGTTCGGGATGCCGGGGGACACCCAGTTTCTGGATATAGGGGCGCCCATATCTAAACATAGG
GGGAAGAAAGAAGTTTTTTTCGGGGCAGATATATCCTATCGCCATATAGAGTATAGTAGTATAGT
AGGAAGTCCAGATAGAATAGAGAGGGCCGGGATCAAACAGTAGGAAGTCCATTTAACCTACCCAG
ATAGCCCTCTCTATTCTATCTGGTCAGATCTCTAGGCCCTATATA
Found at i:330444 original size:20 final size:20
Alignment explanation
Indices: 330419--330458 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
330409 TGGGCGCCTC
330419 CCAGATATATGATGTATGGG
1 CCAGATATATGATGTATGGG
330439 CCAGATATATGATGTATGGG
1 CCAGATATATGATGTATGGG
330459 GAAAGCGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.10, G:0.30, T:0.30
Consensus pattern (20 bp):
CCAGATATATGATGTATGGG
Left flanking sequence: Indices 329919 -- 330418
ATATCTATATTGATTCTCGCTAGGCCTATAGTCTATAGCCTGACCCGGATTATGGATATTGACAG
GACCGGCCAAACAGAGTAGACCGCCCCCTCTATATATGCGTAGCGCCCCTATCTGTATATATACG
TCCCGGATCGGGGGACCGGCCAAACAGATATTCTGTAGACCGGCCCTATATCTATATCTGTCTCT
AGATTCGGTTCGGGATGCCGGGGGACACCCAGTTTCTGGATATAGGGGCGCCCATATCTAAACAT
AGGGGGAAGAAAGAAGTTTTTTTCGGGGCAGATATATCCTATCGCCATATAGAGTATAGTAGTAT
AGTAGGAAGTCCAGATAGAATAGAGAGGGCCGGGATCAAACAGTAGGAAGTCCATTTAACCTACC
CAGATAGCCCTCTCTATTCTATCTGGTCAGATCTCTAGGCCCTATATAGAATCTAGATATAGATA
TAGAATCTTATATGGGGCACTCCTCTCTAGATATATGGGCGCCTC
Right flanking sequence: Indices 330459 -- 330958
GAAAGCGGGGGGAGGGTCCCTTTCTCTCTATATATGGCGACAGGGCAAGTCGAGGGAAGGGAGCT
ACTCATCTCACAGATATATCTATATAGGGCGAGCAAGCACATATATAGAGAGGGGGGCCCGGGTG
GTTGAATACGTGATATGATCGAGGGAGAGAGATATGGGGTGGACGCCATATCTATGATTAGTTGG
GTTAGGTTAGGCCCCATATCTCTCTATATGCCCTCGACACTACACTGATTAGAGACGGAGTGCGG
AGTGCCCTATCTCTAACGCTAACATCTCTCTATATGGGGCCCTATCTAATCTCTCTATCTGCCGG
GCCCAGTCTGCTAACGGATCAATCTGATCAATGGAACCCAATCTCCCTATCTCCCTGGTTCCTCT
GAAGCCTTGAGATCGGGCCGGAGTGACTGACCCTTGCCTTATACCCCCGGCCTACTCATTCCGTT
TCGACTGGCCCTATATAGTATAGAGATCTTGGGCTTCCGCTTCCT
Found at i:331274 original size:46 final size:46
Alignment explanation
Indices: 331202--331300 Score: 189
Period size: 46 Copynumber: 2.1 Consensus size: 46
331192 TCGCCCGATA
331202 GGACGCCAGATATAGATAGGGACCCGATAGCCTATATATCTCTCTGG
1 GGAC-CCAGATATAGATAGGGACCCGATAGCCTATATATCTCTCTGG
331249 GGACCCAGATATAGATAGGGACCCGATAGCCTATATATCTCTCTGG
1 GGACCCAGATATAGATAGGGACCCGATAGCCTATATATCTCTCTGG
331295 GGACCC
1 GGACCC
331301 CCCTATCATA
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
46 48 0.92
47 4 0.08
ACGTcount: A:0.27, C:0.25, G:0.25, T:0.22
Consensus pattern (46 bp):
GGACCCAGATATAGATAGGGACCCGATAGCCTATATATCTCTCTGG
Left flanking sequence: Indices 330702 -- 331201
TTAGAGACGGAGTGCGGAGTGCCCTATCTCTAACGCTAACATCTCTCTATATGGGGCCCTATCTA
ATCTCTCTATCTGCCGGGCCCAGTCTGCTAACGGATCAATCTGATCAATGGAACCCAATCTCCCT
ATCTCCCTGGTTCCTCTGAAGCCTTGAGATCGGGCCGGAGTGACTGACCCTTGCCTTATACCCCC
GGCCTACTCATTCCGTTTCGACTGGCCCTATATAGTATAGAGATCTTGGGCTTCCGCTTCCTAAT
GAGAGTAGAGTAGAGTAGAGTCTATATTCTCATCTGTCAGTCCGGTTCAGGAGATTCTTTAGTCG
ACGGCCGAGAATATAGACTCTCATCAGTCAGTCCTCGGTTCAGTCGGGGGAGAGGAGGACCTTTA
CTTTAGGTACCCGTAGAATCTATATAGGGGGGGGGGGCCGACGGGACGAGATAATAGTAGGACCA
GACCGGATAATAGTAGCGGTAGCGCGGGAGAGCACTCGCCCGATA
Right flanking sequence: Indices 331301 -- 331800
CCCTATCATATACGGCTACTCGATCGACAGCCAATCAGATAGAATAGGGAGGGGGGGCCTCTCCC
AGCCCAGCAGTAGGCCGTCGGGAGCCCAGCTCAGCTATGGCCGTCGGGAGATAGAGCCTCATCAG
ATATATAGAACCTAACCTAGAGAGAGGGGGGGTCGGAGATTGTTTTGAGTCCTCGGTCCCCAGTC
ATCCGTTGCCATATATCTATATAGGGGTGCCCCCCCCCTCTCTATAGATCTCGGAGATAGGGCCG
AGTATAGATAGGGAGACCATCCGGCGCATAGCATAAATGGATTGGGATTCTCCGTTTCTTATCCG
AGTGCTGCACCCATATATTCTATCTGATCTCCGCCCATGGCGAGTGCCGACTATATACTATATAG
AGCTGGGAGCTGGGCCCCTGGAGATATAGGCCAACCATAACTATAGAGAGGCCCTCCAGCCCGGA
GCCCGAGGTAGATATAGAGAGTGGGCCAACCCTAACTAGATAGAA
Found at i:331391 original size:22 final size:25
Alignment explanation
Indices: 331366--331415 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
331356 GGCCTCTCCC
331366 AGCCCAG-CAG-TA-GGCCGTCGGG
1 AGCCCAGCCAGCTATGGCCGTCGGG
331388 AGCCCAGCTCAGCTATGGCCGTCGGG
1 AGCCCAGC-CAGCTATGGCCGTCGGG
331414 AG
1 AG
331416 ATAGAGCCTC
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 7 0.29
24 3 0.12
25 2 0.08
26 12 0.50
ACGTcount: A:0.18, C:0.32, G:0.38, T:0.12
Consensus pattern (25 bp):
AGCCCAGCCAGCTATGGCCGTCGGG
Left flanking sequence: Indices 330866 -- 331365
CCGGAGTGACTGACCCTTGCCTTATACCCCCGGCCTACTCATTCCGTTTCGACTGGCCCTATATA
GTATAGAGATCTTGGGCTTCCGCTTCCTAATGAGAGTAGAGTAGAGTAGAGTCTATATTCTCATC
TGTCAGTCCGGTTCAGGAGATTCTTTAGTCGACGGCCGAGAATATAGACTCTCATCAGTCAGTCC
TCGGTTCAGTCGGGGGAGAGGAGGACCTTTACTTTAGGTACCCGTAGAATCTATATAGGGGGGGG
GGGCCGACGGGACGAGATAATAGTAGGACCAGACCGGATAATAGTAGCGGTAGCGCGGGAGAGCA
CTCGCCCGATAGGACGCCAGATATAGATAGGGACCCGATAGCCTATATATCTCTCTGGGGACCCA
GATATAGATAGGGACCCGATAGCCTATATATCTCTCTGGGGACCCCCCTATCATATACGGCTACT
CGATCGACAGCCAATCAGATAGAATAGGGAGGGGGGGCCTCTCCC
Right flanking sequence: Indices 331416 -- 331915
ATAGAGCCTCATCAGATATATAGAACCTAACCTAGAGAGAGGGGGGGTCGGAGATTGTTTTGAGT
CCTCGGTCCCCAGTCATCCGTTGCCATATATCTATATAGGGGTGCCCCCCCCCTCTCTATAGATC
TCGGAGATAGGGCCGAGTATAGATAGGGAGACCATCCGGCGCATAGCATAAATGGATTGGGATTC
TCCGTTTCTTATCCGAGTGCTGCACCCATATATTCTATCTGATCTCCGCCCATGGCGAGTGCCGA
CTATATACTATATAGAGCTGGGAGCTGGGCCCCTGGAGATATAGGCCAACCATAACTATAGAGAG
GCCCTCCAGCCCGGAGCCCGAGGTAGATATAGAGAGTGGGCCAACCCTAACTAGATAGAAGATAT
ACAGATATATATAGATAGGGCCGACCGGGGCCCCTATATCTATAACTATGCTCCCCTATACTCTA
CAATTCAATCTTCGATTTCGATCCCGGCCGATCCCAGATCCAGAG
Found at i:332352 original size:22 final size:20
Alignment explanation
Indices: 332309--332349 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
332299 CTATATAGAC
*
332309 AGGGGTCCCCATAGAGAGAT
1 AGGGGCCCCCATAGAGAGAT
332329 AGGGGCCCCCATAGAGAGAT
1 AGGGGCCCCCATAGAGAGAT
332349 A
1 A
332350 TAGAAAGTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.32, C:0.22, G:0.34, T:0.12
Consensus pattern (20 bp):
AGGGGCCCCCATAGAGAGAT
Left flanking sequence: Indices 331809 -- 332308
GATATATATAGATAGGGCCGACCGGGGCCCCTATATCTATAACTATGCTCCCCTATACTCTACAA
TTCAATCTTCGATTTCGATCCCGGCCGATCCCAGATCCAGAGGACCCCCACTCCTCGATCACGGA
TTAGAGCTATGAAAGGGCTGTCGGCACCCTATATAGATATATAGATCTATATAGATCTCCGGGGC
GCCCCTATCTATATATATAGATATCTCTCTCTATATGGGAACCCTAGTCGGCACCCCACCCCACC
CTATATAGATGTGATGTGATGTGTTCACCCGGCACCCGGCCAGACTATAGACAGACTCTATAGAG
TCTATAGGGAGGGGGCACCCGGCCTTCCTCAGATCTATATAGCTGGGCCCTATCTAGTTCTCTCT
ATGGGCATCCGCCTTCCGACTAGTATAGAGAGATGGCCCCAGATAAGATATATATAGATAGGGGT
CGGTTATAGAGTTCAGGGCCCCGGGATATAGAGGGCTATATAGAC
Right flanking sequence: Indices 332350 -- 332849
TAGAAAGTCATCAGTCGAGATATAGATGTCGTGCCCCCACGCGACCCTATCGGCTATATGGCGGC
GGTGCTGCATATAGCCGATAGGGGGCGCCCCTGAACTGCCCCGCCCCTGATGGGATGGCGACGCT
TTGGGTTCACTAGAGGGCGACCGACCACGTGACATGAGTGATTGCCGCCCCCCCTCTAGACTCTA
TCTTGAACGCAGCGAATAATATAGATCTAGATCTATCGCCCACCCGGAGCTATATAGAGTCGGGT
CGGCACCCTATATAGAGAGATATGGCCCCGGCCCCCGACGCCTCTGCCTCTAGATAGATGGAGAT
GGGCATATACTATTCAATCCTCAAACCCTTACCATACCCCATATCGGGGGCCCATATATCTATAT
CTAGATCTAGTATATTGTGAAGTGGCCTAGATCTAGTATATTGTGAAGTGGCCTAGATCTAGTAT
ATTGTGAAGTGGCCTAGATCTATATGGGACTATGGGGGAGAGGCC
Found at i:332769 original size:26 final size:26
Alignment explanation
Indices: 332740--332826 Score: 174
Period size: 26 Copynumber: 3.3 Consensus size: 26
332730 ATATCTATAT
332740 CTAGATCTAGTATATTGTGAAGTGGC
1 CTAGATCTAGTATATTGTGAAGTGGC
332766 CTAGATCTAGTATATTGTGAAGTGGC
1 CTAGATCTAGTATATTGTGAAGTGGC
332792 CTAGATCTAGTATATTGTGAAGTGGC
1 CTAGATCTAGTATATTGTGAAGTGGC
332818 CTAGATCTA
1 CTAGATCTA
332827 TATGGGACTA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 61 1.00
ACGTcount: A:0.28, C:0.13, G:0.25, T:0.34
Consensus pattern (26 bp):
CTAGATCTAGTATATTGTGAAGTGGC
Left flanking sequence: Indices 332240 -- 332739
GATAAGATATATATAGATAGGGGTCGGTTATAGAGTTCAGGGCCCCGGGATATAGAGGGCTATAT
AGACAGGGGTCCCCATAGAGAGATAGGGGCCCCCATAGAGAGATATAGAAAGTCATCAGTCGAGA
TATAGATGTCGTGCCCCCACGCGACCCTATCGGCTATATGGCGGCGGTGCTGCATATAGCCGATA
GGGGGCGCCCCTGAACTGCCCCGCCCCTGATGGGATGGCGACGCTTTGGGTTCACTAGAGGGCGA
CCGACCACGTGACATGAGTGATTGCCGCCCCCCCTCTAGACTCTATCTTGAACGCAGCGAATAAT
ATAGATCTAGATCTATCGCCCACCCGGAGCTATATAGAGTCGGGTCGGCACCCTATATAGAGAGA
TATGGCCCCGGCCCCCGACGCCTCTGCCTCTAGATAGATGGAGATGGGCATATACTATTCAATCC
TCAAACCCTTACCATACCCCATATCGGGGGCCCATATATCTATAT
Right flanking sequence: Indices 332827 -- 333326
TATGGGACTATGGGGGAGAGGCCCTATCTCTCTATATGGTCATCGGGCCCTCTCCGCTATATAGA
GAATGGAGTGGGCCCACTGTAGAGTATAGTCCAGGGAAGAGAACCGAGGTCAGGTCTATATAGTA
TCGTATCTTCCCTCCCCTATCTCGACGGTAGCTGTCTCATACCACAGTTAGACAGGCACTCGGTA
GAATATATGTATAGCCGACTGCGCTACTATAGATGAGATGCTGAGAACTATATACATTCCGACCG
AAACTGGACGGCGTAGATAGAATATAGGGCTCCCCGGAACTGGATATGGGCCCATATCTCCCTCA
TCCAGATCTATAGGGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGATATATAGGGTAGGGTAGGGTAGGGTAGGGTAGGG
TAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGG
Found at i:333176 original size:5 final size:5
Alignment explanation
Indices: 333166--333247 Score: 164
Period size: 5 Copynumber: 16.4 Consensus size: 5
333156 GATCTATAGG
333166 GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA
1 GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA
333216 GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GA
1 GAAGA GAAGA GAAGA GAAGA GAAGA GAAGA GA
333248 TATATAGGGT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 77 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (5 bp):
GAAGA
Left flanking sequence: Indices 332666 -- 333165
GATGGAGATGGGCATATACTATTCAATCCTCAAACCCTTACCATACCCCATATCGGGGGCCCATA
TATCTATATCTAGATCTAGTATATTGTGAAGTGGCCTAGATCTAGTATATTGTGAAGTGGCCTAG
ATCTAGTATATTGTGAAGTGGCCTAGATCTATATGGGACTATGGGGGAGAGGCCCTATCTCTCTA
TATGGTCATCGGGCCCTCTCCGCTATATAGAGAATGGAGTGGGCCCACTGTAGAGTATAGTCCAG
GGAAGAGAACCGAGGTCAGGTCTATATAGTATCGTATCTTCCCTCCCCTATCTCGACGGTAGCTG
TCTCATACCACAGTTAGACAGGCACTCGGTAGAATATATGTATAGCCGACTGCGCTACTATAGAT
GAGATGCTGAGAACTATATACATTCCGACCGAAACTGGACGGCGTAGATAGAATATAGGGCTCCC
CGGAACTGGATATGGGCCCATATCTCCCTCATCCAGATCTATAGG
Right flanking sequence: Indices 333248 -- 333747
TATATAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGT
AGGGTAGGGTAGGGAGATATCTTAGTTGCTCATATAGATAGAGGGATCTCCCTGCTTTATCAGTA
GAGGCCCATACATCTATCTGGGAGGCGCCCATATACCAACCATAGAGAGAGAGGGATGCTGTTAG
TTGGTATGGTATGTTCGCCTGGTGGGTGGTATCCTCCCCCCAGTTCTATATAGATCCTCCCCATA
TATAGATAGGCCTACCGCCATATAGATCTATAGGGCGGCCCTTCATCGGTCGAGGACTATAGAGA
GTCGCCCCCAGTTCTATAGAGTAGGAGATATAGATATATAGGGCCATATCTAGAATCTAATCTCA
ATCTATATAGGGAGGGGGGGTGCCATATGGATGGCGACCCTATATATCCCTATCTAAACAGAGGG
CCCCTATCTAATAATATGGAGGGGGAGGCCTTGACCTTTTCTTAT
Found at i:333260 original size:5 final size:5
Alignment explanation
Indices: 333252--333326 Score: 150
Period size: 5 Copynumber: 15.0 Consensus size: 5
333242 AAGAGATATA
333252 TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG
1 TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG TAGGG
333302 TAGGG TAGGG TAGGG TAGGG TAGGG
1 TAGGG TAGGG TAGGG TAGGG TAGGG
333327 AGATATCTTA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 70 1.00
ACGTcount: A:0.20, C:0.00, G:0.60, T:0.20
Consensus pattern (5 bp):
TAGGG
Left flanking sequence: Indices 332752 -- 333251
TATTGTGAAGTGGCCTAGATCTAGTATATTGTGAAGTGGCCTAGATCTAGTATATTGTGAAGTGG
CCTAGATCTATATGGGACTATGGGGGAGAGGCCCTATCTCTCTATATGGTCATCGGGCCCTCTCC
GCTATATAGAGAATGGAGTGGGCCCACTGTAGAGTATAGTCCAGGGAAGAGAACCGAGGTCAGGT
CTATATAGTATCGTATCTTCCCTCCCCTATCTCGACGGTAGCTGTCTCATACCACAGTTAGACAG
GCACTCGGTAGAATATATGTATAGCCGACTGCGCTACTATAGATGAGATGCTGAGAACTATATAC
ATTCCGACCGAAACTGGACGGCGTAGATAGAATATAGGGCTCCCCGGAACTGGATATGGGCCCAT
ATCTCCCTCATCCAGATCTATAGGGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAG
AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGATATA
Right flanking sequence: Indices 333327 -- 333826
AGATATCTTAGTTGCTCATATAGATAGAGGGATCTCCCTGCTTTATCAGTAGAGGCCCATACATC
TATCTGGGAGGCGCCCATATACCAACCATAGAGAGAGAGGGATGCTGTTAGTTGGTATGGTATGT
TCGCCTGGTGGGTGGTATCCTCCCCCCAGTTCTATATAGATCCTCCCCATATATAGATAGGCCTA
CCGCCATATAGATCTATAGGGCGGCCCTTCATCGGTCGAGGACTATAGAGAGTCGCCCCCAGTTC
TATAGAGTAGGAGATATAGATATATAGGGCCATATCTAGAATCTAATCTCAATCTATATAGGGAG
GGGGGGTGCCATATGGATGGCGACCCTATATATCCCTATCTAAACAGAGGGCCCCTATCTAATAA
TATGGAGGGGGAGGCCTTGACCTTTTCTTATCTATATGGCAGGCAACGGCCCTAGAACTACCCTA
TATAGAGAACTCACCCTATATATAGATATGGCGACCCCCTCTATC
Found at i:333792 original size:17 final size:18
Alignment explanation
Indices: 333770--333803 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
333760 CAACGGCCCT
333770 AGAACT-ACCCTATATAG
1 AGAACTCACCCTATATAG
333787 AGAACTCACCCTATATA
1 AGAACTCACCCTATATA
333804 TAGATATGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.41, C:0.26, G:0.09, T:0.24
Consensus pattern (18 bp):
AGAACTCACCCTATATAG
Left flanking sequence: Indices 333270 -- 333769
GGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGTAGGGAGATATCT
TAGTTGCTCATATAGATAGAGGGATCTCCCTGCTTTATCAGTAGAGGCCCATACATCTATCTGGG
AGGCGCCCATATACCAACCATAGAGAGAGAGGGATGCTGTTAGTTGGTATGGTATGTTCGCCTGG
TGGGTGGTATCCTCCCCCCAGTTCTATATAGATCCTCCCCATATATAGATAGGCCTACCGCCATA
TAGATCTATAGGGCGGCCCTTCATCGGTCGAGGACTATAGAGAGTCGCCCCCAGTTCTATAGAGT
AGGAGATATAGATATATAGGGCCATATCTAGAATCTAATCTCAATCTATATAGGGAGGGGGGGTG
CCATATGGATGGCGACCCTATATATCCCTATCTAAACAGAGGGCCCCTATCTAATAATATGGAGG
GGGAGGCCTTGACCTTTTCTTATCTATATGGCAGGCAACGGCCCT
Right flanking sequence: Indices 333804 -- 334303
TAGATATGGCGACCCCCTCTATCTAGACTCGACTCACTCTATTATGGCGGACCGAGAGATAGAGA
TAATGACGAATAGCCTATATATCCATATGGACCAACGAATGAATATAGTTCGAGTTCCGACGGAT
GGAGATGATTGTATTATCATCGATCGCCATCTCTATCTCGGCGGCATACAGAAATGACCACGACC
ACCCCTACGTCTATATAGGCATCAATACGACCGCCCCCTATGTATATATTCTATAGGCATCAAAA
CCATATAGAAGCGGAGGGCCACCCCCTATATCTATATAGGCATCATGAATCTGGGTAGGCATTCA
TCATGAATCTAGGTAGGCCGATGGTTGAATATATGGATAGGGGAGGGGGGTCGCCATATCTATAG
AATCTATGTCGCCCTACCCTATCTATAGAAGTCCTCGACTATATGGAGTTTAGTTGGCCATAGGG
CGGATTGTTGCCATGTTGTTTGCTGCAATGTCGTTTGTTGCTACT
Found at i:335075 original size:12 final size:12
Alignment explanation
Indices: 335058--335090 Score: 66
Period size: 12 Copynumber: 2.8 Consensus size: 12
335048 AGAGAGATCT
335058 AGATATAGAGAG
1 AGATATAGAGAG
335070 AGATATAGAGAG
1 AGATATAGAGAG
335082 AGATATAGA
1 AGATATAGA
335091 TATATGGCCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.52, C:0.00, G:0.30, T:0.18
Consensus pattern (12 bp):
AGATATAGAGAG
Left flanking sequence: Indices 334558 -- 335057
ATATAGAGATGGGCTCCGCTCCCCTCTATAGAGAACTCATATAGGTAGAGGGCCAACGGGCCCTT
CTATTATATACGTGATACAACCGGGCCGAGAGATAGAAAGTGCTCGAAACAGATAGGAAGGATCT
CGACCCCCGGCCCATCTCCCCTACCCCCTACATCTATAGACTCTCCCACCCCCCGATGAGCCGAC
CGGAAGTTTGGGCTCCCCCATAGATAGAGACAGAGAGGGGCCCGAGCCTCCAGATATGGAAAACG
CATATATCTATATCTCACTCCCCTATATAGAGAACTGCCCCCTCACCCCATGATCAGATAGAGAG
GAGACTCCAGATACCATTGATTCCACTCCGCACCCACACTTTGGGCATATCAGCTCTACGCCCCC
ATCATCACCACAGAGCAGAGAGTTATTCTCGCTCCCCCGATTCCCCCTCCTCCCCCTATATCTAG
ATGCGACAGATAGAGAGAAAGGGGGGCCACCGCACAGAGAGATCT
Right flanking sequence: Indices 335091 -- 335590
TATATGGCCTCGGGTGGCCACGATCCCTCCCTTCTGTTTGTATAGGGTGAAGGGGCCCGGCCCTG
TAATATTGATTTTATTTGATTCAGGGGAGGGGGAGGTCCCCCTAGATAGATATGGGCGCTCCCCC
GCCCCCCCATAGCCCATAGATAGTTCAGGGTAGGGCTATATCTGGAGGGGGAGGGCCCCTATCTA
TATCTCGTAGTCTATTTGGTTTGGCACCCTATAGATATGGCGCCCCTATCTATATATGGCCCTAT
ATATCTATATCTCCTACTCTATATAGCTTAGCTCAGCTGGGGGAGAGGGCATCGATAGTTCTAGT
TCTAGTTGGCACCCTATATATCCATATGGCGATGGGGAGAGGACTCTTAAGAGCGCTCGACCGGG
ACATTGATTGGTGATTGGGAGAGGGCCCCTGTGCCCCTGTGTATATAGGCAGGCAGGCAGGCCAA
CCTATTGATTGGAGTGGCCCTATATATCTATATGGCGCGCCCTAT
Found at i:335590 original size:22 final size:22
Alignment explanation
Indices: 335562--335603 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
335552 GATTGGAGTG
335562 GCCCTATATATCTATATGGCGC
1 GCCCTATATATCTATATGGCGC
335584 GCCCTATATATCTATATGGC
1 GCCCTATATATCTATATGGC
335604 CAACCGGGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.24, C:0.26, G:0.17, T:0.33
Consensus pattern (22 bp):
GCCCTATATATCTATATGGCGC
Left flanking sequence: Indices 335062 -- 335561
ATAGAGAGAGATATAGAGAGAGATATAGATATATGGCCTCGGGTGGCCACGATCCCTCCCTTCTG
TTTGTATAGGGTGAAGGGGCCCGGCCCTGTAATATTGATTTTATTTGATTCAGGGGAGGGGGAGG
TCCCCCTAGATAGATATGGGCGCTCCCCCGCCCCCCCATAGCCCATAGATAGTTCAGGGTAGGGC
TATATCTGGAGGGGGAGGGCCCCTATCTATATCTCGTAGTCTATTTGGTTTGGCACCCTATAGAT
ATGGCGCCCCTATCTATATATGGCCCTATATATCTATATCTCCTACTCTATATAGCTTAGCTCAG
CTGGGGGAGAGGGCATCGATAGTTCTAGTTCTAGTTGGCACCCTATATATCCATATGGCGATGGG
GAGAGGACTCTTAAGAGCGCTCGACCGGGACATTGATTGGTGATTGGGAGAGGGCCCCTGTGCCC
CTGTGTATATAGGCAGGCAGGCAGGCCAACCTATTGATTGGAGTG
Right flanking sequence: Indices 335604 -- 336103
CAACCGGGAGCCACCCCCTCTATATAGAACTGTTTGCTCGACCGATTGATGGGTAGACATAGGTA
GAGGGCACTCTATCTATATAGACTACGCGGATCTCATGGCCTTTAGTCGACCTATTGATTGGGCG
GGAGAGGGTACCGATGACGGGCCGCCATCGCCCCTGTGTCTATAGGCTCCTTCCTGCCCCCTATA
TAGATATGGGGAGAGGGCCCGGCCCCCTATCTGAACTATGGCTCCTTCCTGCCCCCTCTATAGAT
ATGGGGAGAGGAACTCGACCTATCAATAAAGAGGTCATAGGTCGAGCCGGATGGACCAGCCAGCA
ATTATCTAGATGGCACCTGCCCGCCCTATATATATAGATTCTCTAGGTCGAGCCCACCCTCCCCT
CCCCTCTCTATAGTATGGGTATGGCATTCCTCTCTAGGTTGAGCCGCTCTCATGTTGGAGTCGAG
CCAATGGATGATAGTAGGGCAGCCCAGAGATCTGGCCAGGTCGAG
Found at i:338679 original size:26 final size:25
Alignment explanation
Indices: 338649--338718 Score: 95
Period size: 26 Copynumber: 2.7 Consensus size: 25
338639 ATCTCCACCA
*
338649 ACTAGCTCGACCAACTAGATAGAGG
1 ACTAGCTCGACTAACTAGATAGAGG
* *
338674 CACTAGCTCGACTGACTAGATGGAGG
1 -ACTAGCTCGACTAACTAGATAGAGG
338700 AGCTAGCTCGACTAACTAG
1 A-CTAGCTCGACTAACTAG
338719 CTCGAGTCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 1 0.03
26 38 0.97
ACGTcount: A:0.31, C:0.24, G:0.26, T:0.19
Consensus pattern (25 bp):
ACTAGCTCGACTAACTAGATAGAGG
Left flanking sequence: Indices 338149 -- 338648
TCTATATAGAGGGGGCCTCCCCCTCTCTCTATATGGTATATGGATATGGTCCATCTGGCGAGTGG
AGTGAGGACCACCCGACCAACCACGCCTATATATCATATATCTGGGTACCACTCGACCAAACACT
CTCCCAACCACGCCCTATCTATAGAATGGTCTCCCATTCTAGACCACGAGACTAGACCACGCCAT
ATGGATATAGAGGGAACCACTCGACCCCTATCCCCTATCTATATAGAGTGGATAGTGGACCACGA
TACTAGACCACTCTCCCATTCTAGACCAACCACTCCGGACCAATCTCGTTAGATAGATCATACAG
GACCACGAACCCCTATAGTCTATATGGACCAACCACAGTTCTCTATATAGGGCGGACCACGATAC
CATTCGTATTACTTATATAAGTCATACCAACCCCCCATATAGATATAGGGGGCCATATAGATCTA
TAGGGCGAGTCACAAAGATCTCTATCTGGGTACCAATCTCCACCA
Right flanking sequence: Indices 338719 -- 339218
CTCGAGTCATGGAGGAGCTAGTCACTGTCGTAGTATCTAGCCTATCTAGATATACGGCCCTATAA
ATCCATATGGGCCAAAGAAACTAAACTATATAGGTGAATTGTGAGGTGAGACCTCGGATAGAGCA
GGTTTCTGTGCTGTAGCACCAGGGCAAGGACGCAGAGATCCCAGTCTTCATCAACAAGGAAAGTA
TATACTATCTTTGGCCGAGGTATGGTCGTAGATGAGGAGGGCCCCCCCTCTATAGAGTTCTATCT
GGCGGAGATGAGGAGGGATTATTCTATCCGAAGGAGTGATATCAAGGTATGGTCGTAGAATCTAG
CCGAGATATGGGATTCTAGTCGCTAGCCATCTCTATAGATAGGGAATCTAGCCTATAGATAGATA
GAGATATAGAGAGAGAGATAGATAGATAGATAGAGAGATAGATATAGAGAGAGGGGGGGCCATCT
CTCTATAGAGGGAATCTAGTCGCCCATATCTATATATAGGGGAGA
Found at i:339123 original size:12 final size:12
Alignment explanation
Indices: 339102--339161 Score: 57
Period size: 12 Copynumber: 4.8 Consensus size: 12
339092 TAGCCTATAG
*
339102 ATAGATAGAGAT
1 ATAGAGAGAGAT
*
339114 ATAGAGAGAGAG
1 ATAGAGAGAGAT
*
339126 ATAGATAGATAGAT
1 ATAG--AGAGAGAT
* *
339140 AGAGAGATAGAT
1 ATAGAGAGAGAT
339152 ATAGAGAGAG
1 ATAGAGAGAG
339162 GGGGGGCCAT
Statistics
Matches: 39, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
12 30 0.77
14 9 0.23
ACGTcount: A:0.50, C:0.00, G:0.32, T:0.18
Consensus pattern (12 bp):
ATAGAGAGAGAT
Left flanking sequence: Indices 338602 -- 339101
TATAGGGCGAGTCACAAAGATCTCTATCTGGGTACCAATCTCCACCAACTAGCTCGACCAACTAG
ATAGAGGCACTAGCTCGACTGACTAGATGGAGGAGCTAGCTCGACTAACTAGCTCGAGTCATGGA
GGAGCTAGTCACTGTCGTAGTATCTAGCCTATCTAGATATACGGCCCTATAAATCCATATGGGCC
AAAGAAACTAAACTATATAGGTGAATTGTGAGGTGAGACCTCGGATAGAGCAGGTTTCTGTGCTG
TAGCACCAGGGCAAGGACGCAGAGATCCCAGTCTTCATCAACAAGGAAAGTATATACTATCTTTG
GCCGAGGTATGGTCGTAGATGAGGAGGGCCCCCCCTCTATAGAGTTCTATCTGGCGGAGATGAGG
AGGGATTATTCTATCCGAAGGAGTGATATCAAGGTATGGTCGTAGAATCTAGCCGAGATATGGGA
TTCTAGTCGCTAGCCATCTCTATAGATAGGGAATCTAGCCTATAG
Right flanking sequence: Indices 339162 -- 339661
GGGGGGCCATCTCTCTATAGAGGGAATCTAGTCGCCCATATCTATATATAGGGGAGATTCTAGTC
GCCCATATCTATATATAGGGGAGATTCTAGTCGCCCATATCTATATATAGGGGAGATGAGGAGGC
CCTATCTAGATATCTCCATATCTATCTATCTATCTATCTATCTATCTATATCTCTATAGGGATTC
TAGTCGCTAGCCATATCTATATATAGGGAATCTAGTCGCCCTATCTATATATATGGCCGAGGTAT
GGTCGCTAGTATCTAGTCGTATATATGTCTAGTCGCTAGTATCTAGCCTATCTACATATGGGGAA
TCTAGCCCCTAGAAATCCATATGGGGTCGTAGAATCTAGCCCTATAGAGATATGGGATTCCGAGG
CCCTGAGAGAATGAATCTATATTGGCCCGGGGATCACCAATCTATATTGGCCCGGGGATCACACG
GTTCTAGTTGGGGCCCCAACGGCCCTATATATGTTATATGTTCTC
Found at i:339161 original size:4 final size:4
Alignment explanation
Indices: 339098--339152 Score: 65
Period size: 4 Copynumber: 13.8 Consensus size: 4
339088 AATCTAGCCT
* * * * *
339098 ATAG ATAG ATAG AGAT ATAG AGAG AGAG ATAG ATAG ATAG ATAG AGAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
339146 ATAG ATA
1 ATAG ATA
339153 TAGAGAGAGG
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
4 43 1.00
ACGTcount: A:0.51, C:0.00, G:0.29, T:0.20
Consensus pattern (4 bp):
ATAG
Left flanking sequence: Indices 338598 -- 339097
GATCTATAGGGCGAGTCACAAAGATCTCTATCTGGGTACCAATCTCCACCAACTAGCTCGACCAA
CTAGATAGAGGCACTAGCTCGACTGACTAGATGGAGGAGCTAGCTCGACTAACTAGCTCGAGTCA
TGGAGGAGCTAGTCACTGTCGTAGTATCTAGCCTATCTAGATATACGGCCCTATAAATCCATATG
GGCCAAAGAAACTAAACTATATAGGTGAATTGTGAGGTGAGACCTCGGATAGAGCAGGTTTCTGT
GCTGTAGCACCAGGGCAAGGACGCAGAGATCCCAGTCTTCATCAACAAGGAAAGTATATACTATC
TTTGGCCGAGGTATGGTCGTAGATGAGGAGGGCCCCCCCTCTATAGAGTTCTATCTGGCGGAGAT
GAGGAGGGATTATTCTATCCGAAGGAGTGATATCAAGGTATGGTCGTAGAATCTAGCCGAGATAT
GGGATTCTAGTCGCTAGCCATCTCTATAGATAGGGAATCTAGCCT
Right flanking sequence: Indices 339153 -- 339652
TAGAGAGAGGGGGGGCCATCTCTCTATAGAGGGAATCTAGTCGCCCATATCTATATATAGGGGAG
ATTCTAGTCGCCCATATCTATATATAGGGGAGATTCTAGTCGCCCATATCTATATATAGGGGAGA
TGAGGAGGCCCTATCTAGATATCTCCATATCTATCTATCTATCTATCTATCTATCTATATCTCTA
TAGGGATTCTAGTCGCTAGCCATATCTATATATAGGGAATCTAGTCGCCCTATCTATATATATGG
CCGAGGTATGGTCGCTAGTATCTAGTCGTATATATGTCTAGTCGCTAGTATCTAGCCTATCTACA
TATGGGGAATCTAGCCCCTAGAAATCCATATGGGGTCGTAGAATCTAGCCCTATAGAGATATGGG
ATTCCGAGGCCCTGAGAGAATGAATCTATATTGGCCCGGGGATCACCAATCTATATTGGCCCGGG
GATCACACGGTTCTAGTTGGGGCCCCAACGGCCCTATATATGTTA
Found at i:339299 original size:30 final size:32
Alignment explanation
Indices: 339188--339283 Score: 192
Period size: 32 Copynumber: 3.0 Consensus size: 32
339178 ATAGAGGGAA
339188 TCTAGTCGCCCATATCTATATATAGGGGAGAT
1 TCTAGTCGCCCATATCTATATATAGGGGAGAT
339220 TCTAGTCGCCCATATCTATATATAGGGGAGAT
1 TCTAGTCGCCCATATCTATATATAGGGGAGAT
339252 TCTAGTCGCCCATATCTATATATAGGGGAGAT
1 TCTAGTCGCCCATATCTATATATAGGGGAGAT
339284 GAGGAGGCCC
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 64 1.00
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (32 bp):
TCTAGTCGCCCATATCTATATATAGGGGAGAT
Left flanking sequence: Indices 338688 -- 339187
ACTAGATGGAGGAGCTAGCTCGACTAACTAGCTCGAGTCATGGAGGAGCTAGTCACTGTCGTAGT
ATCTAGCCTATCTAGATATACGGCCCTATAAATCCATATGGGCCAAAGAAACTAAACTATATAGG
TGAATTGTGAGGTGAGACCTCGGATAGAGCAGGTTTCTGTGCTGTAGCACCAGGGCAAGGACGCA
GAGATCCCAGTCTTCATCAACAAGGAAAGTATATACTATCTTTGGCCGAGGTATGGTCGTAGATG
AGGAGGGCCCCCCCTCTATAGAGTTCTATCTGGCGGAGATGAGGAGGGATTATTCTATCCGAAGG
AGTGATATCAAGGTATGGTCGTAGAATCTAGCCGAGATATGGGATTCTAGTCGCTAGCCATCTCT
ATAGATAGGGAATCTAGCCTATAGATAGATAGAGATATAGAGAGAGAGATAGATAGATAGATAGA
GAGATAGATATAGAGAGAGGGGGGGCCATCTCTCTATAGAGGGAA
Right flanking sequence: Indices 339284 -- 339783
GAGGAGGCCCTATCTAGATATCTCCATATCTATCTATCTATCTATCTATCTATCTATATCTCTAT
AGGGATTCTAGTCGCTAGCCATATCTATATATAGGGAATCTAGTCGCCCTATCTATATATATGGC
CGAGGTATGGTCGCTAGTATCTAGTCGTATATATGTCTAGTCGCTAGTATCTAGCCTATCTACAT
ATGGGGAATCTAGCCCCTAGAAATCCATATGGGGTCGTAGAATCTAGCCCTATAGAGATATGGGA
TTCCGAGGCCCTGAGAGAATGAATCTATATTGGCCCGGGGATCACCAATCTATATTGGCCCGGGG
ATCACACGGTTCTAGTTGGGGCCCCAACGGCCCTATATATGTTATATGTTCTCGCTAACAACTCC
CTCCCGCCCCACCCCGAACTCTAGATAGGGGCTTCCGCTCTCCGCTCTATCCGGTGTTCGATTTC
CGGACGTAATGAAGCACTGGCTATTGTGATAGGAGATGAAGCGGG
Found at i:339319 original size:4 final size:4
Alignment explanation
Indices: 339310--339340 Score: 62
Period size: 4 Copynumber: 7.8 Consensus size: 4
339300 GATATCTCCA
339310 TATC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TAT
339341 ATCTCTATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.00, T:0.52
Consensus pattern (4 bp):
TATC
Left flanking sequence: Indices 338810 -- 339309
TATATAGGTGAATTGTGAGGTGAGACCTCGGATAGAGCAGGTTTCTGTGCTGTAGCACCAGGGCA
AGGACGCAGAGATCCCAGTCTTCATCAACAAGGAAAGTATATACTATCTTTGGCCGAGGTATGGT
CGTAGATGAGGAGGGCCCCCCCTCTATAGAGTTCTATCTGGCGGAGATGAGGAGGGATTATTCTA
TCCGAAGGAGTGATATCAAGGTATGGTCGTAGAATCTAGCCGAGATATGGGATTCTAGTCGCTAG
CCATCTCTATAGATAGGGAATCTAGCCTATAGATAGATAGAGATATAGAGAGAGAGATAGATAGA
TAGATAGAGAGATAGATATAGAGAGAGGGGGGGCCATCTCTCTATAGAGGGAATCTAGTCGCCCA
TATCTATATATAGGGGAGATTCTAGTCGCCCATATCTATATATAGGGGAGATTCTAGTCGCCCAT
ATCTATATATAGGGGAGATGAGGAGGCCCTATCTAGATATCTCCA
Right flanking sequence: Indices 339341 -- 339840
ATCTCTATAGGGATTCTAGTCGCTAGCCATATCTATATATAGGGAATCTAGTCGCCCTATCTATA
TATATGGCCGAGGTATGGTCGCTAGTATCTAGTCGTATATATGTCTAGTCGCTAGTATCTAGCCT
ATCTACATATGGGGAATCTAGCCCCTAGAAATCCATATGGGGTCGTAGAATCTAGCCCTATAGAG
ATATGGGATTCCGAGGCCCTGAGAGAATGAATCTATATTGGCCCGGGGATCACCAATCTATATTG
GCCCGGGGATCACACGGTTCTAGTTGGGGCCCCAACGGCCCTATATATGTTATATGTTCTCGCTA
ACAACTCCCTCCCGCCCCACCCCGAACTCTAGATAGGGGCTTCCGCTCTCCGCTCTATCCGGTGT
TCGATTTCCGGACGTAATGAAGCACTGGCTATTGTGATAGGAGATGAAGCGGGCCATGACACTGG
CTATGCAGCTATGCACTTCAATCAATCGGCCCGGTGCTCGACCTC
Found at i:339401 original size:28 final size:30
Alignment explanation
Indices: 339346--339409 Score: 87
Period size: 32 Copynumber: 2.1 Consensus size: 30
339336 TCTATATCTC
*
339346 TATAGGGATTCTAGTCGCTAGCCATATCTATA
1 TATAGGGAATCTAGTCGC-A-CCATATCTATA
339378 TATAGGGAATCTAGTCGC-CC-TATCTATA
1 TATAGGGAATCTAGTCGCACCATATCTATA
339406 TATA
1 TATA
339410 TGGCCGAGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
28 12 0.39
29 2 0.06
32 17 0.55
ACGTcount: A:0.30, C:0.19, G:0.17, T:0.34
Consensus pattern (30 bp):
TATAGGGAATCTAGTCGCACCATATCTATA
Left flanking sequence: Indices 338846 -- 339345
GCAGGTTTCTGTGCTGTAGCACCAGGGCAAGGACGCAGAGATCCCAGTCTTCATCAACAAGGAAA
GTATATACTATCTTTGGCCGAGGTATGGTCGTAGATGAGGAGGGCCCCCCCTCTATAGAGTTCTA
TCTGGCGGAGATGAGGAGGGATTATTCTATCCGAAGGAGTGATATCAAGGTATGGTCGTAGAATC
TAGCCGAGATATGGGATTCTAGTCGCTAGCCATCTCTATAGATAGGGAATCTAGCCTATAGATAG
ATAGAGATATAGAGAGAGAGATAGATAGATAGATAGAGAGATAGATATAGAGAGAGGGGGGGCCA
TCTCTCTATAGAGGGAATCTAGTCGCCCATATCTATATATAGGGGAGATTCTAGTCGCCCATATC
TATATATAGGGGAGATTCTAGTCGCCCATATCTATATATAGGGGAGATGAGGAGGCCCTATCTAG
ATATCTCCATATCTATCTATCTATCTATCTATCTATCTATATCTC
Right flanking sequence: Indices 339410 -- 339909
TGGCCGAGGTATGGTCGCTAGTATCTAGTCGTATATATGTCTAGTCGCTAGTATCTAGCCTATCT
ACATATGGGGAATCTAGCCCCTAGAAATCCATATGGGGTCGTAGAATCTAGCCCTATAGAGATAT
GGGATTCCGAGGCCCTGAGAGAATGAATCTATATTGGCCCGGGGATCACCAATCTATATTGGCCC
GGGGATCACACGGTTCTAGTTGGGGCCCCAACGGCCCTATATATGTTATATGTTCTCGCTAACAA
CTCCCTCCCGCCCCACCCCGAACTCTAGATAGGGGCTTCCGCTCTCCGCTCTATCCGGTGTTCGA
TTTCCGGACGTAATGAAGCACTGGCTATTGTGATAGGAGATGAAGCGGGCCATGACACTGGCTAT
GCAGCTATGCACTTCAATCAATCGGCCCGGTGCTCGACCTCCTACCTCCTGCTCCTACCCCCTGA
CCGAGATGGCCCTATCTAGATAGATATATGGCGCCGGCCCCCAGC
Found at i:339410 original size:32 final size:30
Alignment explanation
Indices: 339333--339410 Score: 75
Period size: 32 Copynumber: 2.5 Consensus size: 30
339323 ATCTATCTAT
* * *
339333 CTATCTATATCTCTATAGGGATTCTAGTCG
1 CTATCTATATATATATAGGGAATCTAGTCG
* *
339363 CTAGCCATATCTATATATAGGGAATCTAGTCG
1 CTA-TC-TATATATATATAGGGAATCTAGTCG
339395 CCCTATCTATATATAT
1 --CTATCTATATATAT
339411 GGCCGAGGTA
Statistics
Matches: 37, Mismatches: 7, Indels: 6
0.74 0.14 0.12
Matches are distributed among these distances:
30 3 0.08
31 1 0.03
32 29 0.78
33 1 0.03
34 3 0.08
ACGTcount: A:0.28, C:0.21, G:0.14, T:0.37
Consensus pattern (30 bp):
CTATCTATATATATATAGGGAATCTAGTCG
Left flanking sequence: Indices 338833 -- 339332
GACCTCGGATAGAGCAGGTTTCTGTGCTGTAGCACCAGGGCAAGGACGCAGAGATCCCAGTCTTC
ATCAACAAGGAAAGTATATACTATCTTTGGCCGAGGTATGGTCGTAGATGAGGAGGGCCCCCCCT
CTATAGAGTTCTATCTGGCGGAGATGAGGAGGGATTATTCTATCCGAAGGAGTGATATCAAGGTA
TGGTCGTAGAATCTAGCCGAGATATGGGATTCTAGTCGCTAGCCATCTCTATAGATAGGGAATCT
AGCCTATAGATAGATAGAGATATAGAGAGAGAGATAGATAGATAGATAGAGAGATAGATATAGAG
AGAGGGGGGGCCATCTCTCTATAGAGGGAATCTAGTCGCCCATATCTATATATAGGGGAGATTCT
AGTCGCCCATATCTATATATAGGGGAGATTCTAGTCGCCCATATCTATATATAGGGGAGATGAGG
AGGCCCTATCTAGATATCTCCATATCTATCTATCTATCTATCTAT
Right flanking sequence: Indices 339411 -- 339910
GGCCGAGGTATGGTCGCTAGTATCTAGTCGTATATATGTCTAGTCGCTAGTATCTAGCCTATCTA
CATATGGGGAATCTAGCCCCTAGAAATCCATATGGGGTCGTAGAATCTAGCCCTATAGAGATATG
GGATTCCGAGGCCCTGAGAGAATGAATCTATATTGGCCCGGGGATCACCAATCTATATTGGCCCG
GGGATCACACGGTTCTAGTTGGGGCCCCAACGGCCCTATATATGTTATATGTTCTCGCTAACAAC
TCCCTCCCGCCCCACCCCGAACTCTAGATAGGGGCTTCCGCTCTCCGCTCTATCCGGTGTTCGAT
TTCCGGACGTAATGAAGCACTGGCTATTGTGATAGGAGATGAAGCGGGCCATGACACTGGCTATG
CAGCTATGCACTTCAATCAATCGGCCCGGTGCTCGACCTCCTACCTCCTGCTCCTACCCCCTGAC
CGAGATGGCCCTATCTAGATAGATATATGGCGCCGGCCCCCAGCT
Found at i:339593 original size:25 final size:25
Alignment explanation
Indices: 339565--339613 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
339555 TGAGAGAATG
339565 AATCTATATTGGCCCGGGGATCACC
1 AATCTATATTGGCCCGGGGATCACC
339590 AATCTATATTGGCCCGGGGATCAC
1 AATCTATATTGGCCCGGGGATCAC
339614 ACGGTTCTAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.24, T:0.24
Consensus pattern (25 bp):
AATCTATATTGGCCCGGGGATCACC
Left flanking sequence: Indices 339065 -- 339564
GCTAGCCATCTCTATAGATAGGGAATCTAGCCTATAGATAGATAGAGATATAGAGAGAGAGATAG
ATAGATAGATAGAGAGATAGATATAGAGAGAGGGGGGGCCATCTCTCTATAGAGGGAATCTAGTC
GCCCATATCTATATATAGGGGAGATTCTAGTCGCCCATATCTATATATAGGGGAGATTCTAGTCG
CCCATATCTATATATAGGGGAGATGAGGAGGCCCTATCTAGATATCTCCATATCTATCTATCTAT
CTATCTATCTATCTATATCTCTATAGGGATTCTAGTCGCTAGCCATATCTATATATAGGGAATCT
AGTCGCCCTATCTATATATATGGCCGAGGTATGGTCGCTAGTATCTAGTCGTATATATGTCTAGT
CGCTAGTATCTAGCCTATCTACATATGGGGAATCTAGCCCCTAGAAATCCATATGGGGTCGTAGA
ATCTAGCCCTATAGAGATATGGGATTCCGAGGCCCTGAGAGAATG
Right flanking sequence: Indices 339614 -- 340113
ACGGTTCTAGTTGGGGCCCCAACGGCCCTATATATGTTATATGTTCTCGCTAACAACTCCCTCCC
GCCCCACCCCGAACTCTAGATAGGGGCTTCCGCTCTCCGCTCTATCCGGTGTTCGATTTCCGGAC
GTAATGAAGCACTGGCTATTGTGATAGGAGATGAAGCGGGCCATGACACTGGCTATGCAGCTATG
CACTTCAATCAATCGGCCCGGTGCTCGACCTCCTACCTCCTGCTCCTACCCCCTGACCGAGATGG
CCCTATCTAGATAGATATATGGCGCCGGCCCCCAGCTAGGCTATCTATATAGAGATAGAGATAGA
GATAGAGATAGAGAGTGGGCGACTGCGGCTATATCTATATAGAGTTGGAGTTGGCACTCCCCCGT
ACTATACATAGCTGGGGGGGAGGGACTCCCCGACGTGGGATCACCGGACTATAGGCTCTCCGCCC
GGCCGTCAAGTCAGAGCCCCCGCCCCGGGACGCCGGGTTGGATCT
Found at i:339933 original size:6 final size:6
Alignment explanation
Indices: 339922--339952 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
339912 GGCTATCTAT
339922 ATAGAG ATAGAG ATAGAG ATAGAG ATAGAG A
1 ATAGAG ATAGAG ATAGAG ATAGAG ATAGAG A
339953 GTGGGCGACT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.32, T:0.16
Consensus pattern (6 bp):
ATAGAG
Left flanking sequence: Indices 339422 -- 339921
GGTCGCTAGTATCTAGTCGTATATATGTCTAGTCGCTAGTATCTAGCCTATCTACATATGGGGAA
TCTAGCCCCTAGAAATCCATATGGGGTCGTAGAATCTAGCCCTATAGAGATATGGGATTCCGAGG
CCCTGAGAGAATGAATCTATATTGGCCCGGGGATCACCAATCTATATTGGCCCGGGGATCACACG
GTTCTAGTTGGGGCCCCAACGGCCCTATATATGTTATATGTTCTCGCTAACAACTCCCTCCCGCC
CCACCCCGAACTCTAGATAGGGGCTTCCGCTCTCCGCTCTATCCGGTGTTCGATTTCCGGACGTA
ATGAAGCACTGGCTATTGTGATAGGAGATGAAGCGGGCCATGACACTGGCTATGCAGCTATGCAC
TTCAATCAATCGGCCCGGTGCTCGACCTCCTACCTCCTGCTCCTACCCCCTGACCGAGATGGCCC
TATCTAGATAGATATATGGCGCCGGCCCCCAGCTAGGCTATCTAT
Right flanking sequence: Indices 339953 -- 340452
GTGGGCGACTGCGGCTATATCTATATAGAGTTGGAGTTGGCACTCCCCCGTACTATACATAGCTG
GGGGGGAGGGACTCCCCGACGTGGGATCACCGGACTATAGGCTCTCCGCCCGGCCGTCAAGTCAG
AGCCCCCGCCCCGGGACGCCGGGTTGGATCTTATCTATATCGAGCCCCATAGAGAGTTCTAGATA
GGAGGCCGACTGACTATACATATAGATAGCCTAGTTGCCCTCGATCTATCTATCGCCATATATAG
ATAGTGCCGGGGGAGCCCTATCTATCTGGGGGCCCCTACCCTGAACTATCTATCTCTATCTGGGG
GCCCTGAACTCTATATATATAGATATAGGCCGACGGGAGAGGAGCCCCCTCTCTCTATATGGGGT
TAGGCCCTATCCATATATGGGGGCCCCTTCCTATCTTATCTTATCTTGTGATCGATTTCTGTTCT
GCTTGCACCTATATATCTATCTGGTCGAGGGCCCCAGATATGATC
Found at i:340794 original size:20 final size:20
Alignment explanation
Indices: 340769--340811 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
340759 CTCCCCCAGC
340769 CCCAGCTATATATCTCATCT
1 CCCAGCTATATATCTCATCT
340789 CCCAGCTATATATCTCATCT
1 CCCAGCTATATATCTCATCT
340809 CCC
1 CCC
340812 CCAGCCCTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.23, C:0.40, G:0.05, T:0.33
Consensus pattern (20 bp):
CCCAGCTATATATCTCATCT
Left flanking sequence: Indices 340269 -- 340768
TATCTGGGGGCCCTGAACTCTATATATATAGATATAGGCCGACGGGAGAGGAGCCCCCTCTCTCT
ATATGGGGTTAGGCCCTATCCATATATGGGGGCCCCTTCCTATCTTATCTTATCTTGTGATCGAT
TTCTGTTCTGCTTGCACCTATATATCTATCTGGTCGAGGGCCCCAGATATGATCTATATAGGCCC
TATAGATCCCTATCTAAACAGAGGGCCCCAATCAACTCTATCTGCCAGATCTGATCGATCGAGAT
CGAGATCTCGATCTATAGAGAGGGGAGGGGAGGGGCCCGCCCCCCCTGAACTCTCTCGGCTCGGC
CCCCAATCTCTCTATCTGCCAGATCTGATCGATCGAGATCGAGATCGAGATCTATATAGAGGGGG
AGGGGGAGGGGGAGGGGCCCGCCCCTATCTGAATGAGAGGAGGGTGAGGGGGGGGGTGGGGGGCC
TATCTACTATCTATAGTAGACAGTAGACCCGCCCCCTCCCCCAGC
Right flanking sequence: Indices 340812 -- 341311
CCAGCCCTAGCCCTCTATCTATCGGGGAGGGCCCTCTCGAGAGAGAGATAGAGAGAGAGATATAT
AGCGAGTAGAGTAGAGTAGGGTTTCTCTCTCTATTATATCTAGTTGGGAGCCATATCTCTCTATA
TGGGGCCCTCTATATAGATATGGGAACGGGAATCACTAACTCTAAACTAAACTAGCCATATCTAT
GGGTTTTGGTTTAGTACGATCTCGCTGAACACCTCGCGGTGCTTACACGGAAACGCCTATCGAAG
TGATGTTCTTTCACCTCGTACGATAACTTGTATAGAGAAGGATTTCCCGCTTAGATGCTTTCAGC
AGTTCTTCCATACCGACTTGGCTTCCCGGCGCTGCATTCTGGATACAACCGGTACACCATAGGTT
GGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCCTCGCAGTTATCCTTTCAACACCAGCGGTA
GATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT
Found at i:343335 original size:11 final size:11
Alignment explanation
Indices: 343319--343343 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
343309 GTTGAGTGAT
343319 GGGGGCTTCCC
1 GGGGGCTTCCC
343330 GGGGGCTTCCC
1 GGGGGCTTCCC
343341 GGG
1 GGG
343344 AACGGATCTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.32, G:0.52, T:0.16
Consensus pattern (11 bp):
GGGGGCTTCCC
Left flanking sequence: Indices 342819 -- 343318
CCGCCCCCCCGCCCGACCGCAACTCTATATAGATGGGATATAGAATCTAATCTAATCTAATCCAT
ATAGGGGTGGGGGGGGGGCAGAGATATGGACAGTGGAGTGCAGGCCATGGTTCAGTAGTCGGGGC
AACTTCGTCACTTTCGTGTACCCATCGGCAGACAGCCCTTTCGGGGGTTCCTTAGGGACCGATTC
ACTCTGCGTAGATTGACCGAACGCAGAAACCCTGGAACTGGCAGGCGATCGTGTTTTTCACATGA
TTCTCGTTACTCATGTCAGCATTCTCACTTCTGATATCTCCAGGAGCGCAAGCCCCCCTCCGGAT
AGAGAGCGCCAGCGAACTACGTTGTTGTCCCTTCTCCGATTCACAGAACGTCCCGCTACTGACCC
GCATACCGCACCGCAGACTCTAATCTCTATAGTATAGGGGGCCTATCTCCCATCTCTATAGAGAG
GGGGGGAGGGGCCACCTCTCTATCTATAGAATGGAGTTGAGTGAT
Right flanking sequence: Indices 343344 -- 343843
AACGGATCTCGTCGCTTCGGTGAATCACTTGAGCCCCGATACATTTTCGGTGCTATGGAGCTAGA
CCAGTGAGCTATTACGCTTTCTTCGAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG
CTCGATTACCTCCTTTTCCACTAAGTGACTGCTTAGGGACCTTAGCGTACGATCTGGGCTGTTTC
CCTCTCGACTCTGGATCTTAGCACCCAAAGTCTGTCTGCTTACTGAAATGGCCTGTACTCGGAGT
TTCCTTGGGGTTGGTCAAGCTTTGGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATAAG
CATGCACGCTCTACTGAAATGGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTC
ACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTT
GGAGCTCTCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGG
Found at i:345260 original size:5 final size:5
Alignment explanation
Indices: 345252--345307 Score: 85
Period size: 5 Copynumber: 11.2 Consensus size: 5
345242 TCAGATATAG
* * *
345252 AGCAG AGCAG AGCAG AGCAT AGCAT AGCAT AGCAT AGCAT AGCAT AGCAT
1 AGCAT AGCAT AGCAT AGCAT AGCAT AGCAT AGCAT AGCAT AGCAT AGCAT
345302 AGCAT A
1 AGCAT A
345308 TATTTCTCTA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
5 50 1.00
ACGTcount: A:0.41, C:0.20, G:0.25, T:0.14
Consensus pattern (5 bp):
AGCAT
Left flanking sequence: Indices 344752 -- 345251
CTCTCTCTAGCCGAACTAGAACTATCTAGAGGCCGTTAGAACTATAGCCATCTCCCGGGGCCCTA
TCTATATCTATCTGGGGGGGGTTGGCAGGTGGAATTCGATTATCTCGATTCTCTATATTGGGTGG
GGGGGCTCCGCTGATGGATATTTGCCCAATCCGCTTTCGCTCGCCGCTACTAACGGGGTCTCGGT
TGATTTCCTTTCCTCTAGCTACTTAGATGTTTCAGTTCGCTAAGTCTTGTTTGTGGACACGGTTT
CCCGATCGGAGATCCATGGATCACGGACGGTATCTCCCCATGGCCTTTCGCCTTTGGAAGCGTCC
TTCCCTCTCAATGCCCGGGCATCCATCCGATGCATTCCGATACAGTAGGCATTGAACCTACCAAT
ATCGATATTGGCACAGCCCCCCCACCCAATATAGAGAATCGATAAATCAGGGGCTATCTACCTAT
CTATATATGGCAGGGCATAGATTTATCCGCCCCACTCAGATATAG
Right flanking sequence: Indices 345308 -- 345807
TATTTCTCTACTCTACAGATAGATACTCTAGGTTCTCTATTCTCTATGCCCTCTATATTGATCTG
GCAACCAACCCGATACCCGCCCTATCTATAGATCTAGGGGCGCCCTATCTATATATCTGGTTAAG
TTCTATACGATCGATCTATAGGGGAGGCCATATAGAATAGTCTCATTCAGGCCCTATCTATCTCT
CTATTCTATGGGGGCCGATATATAGATAGAGAGAGAGAGGGATAGATAGGGGTGAAGGGGGCACC
AAACAGAATAGAATAATGATCTATCAAATATGGATAGGTGGCCAGACGATCTATATTACATTAAT
ATTCTGTATGGATAGGTGGCCAGACGATCTAGAAACCATATGCCCTACCCTATAGTTCTCTCTAT
CCGGCAAACATACATCTATATATGGGCTGGGCGGCCCAACCCCCAACCATATATAGACTATACCA
TACTATACCGTCGCATCCCCTATATCGGGAGGGCGATAGGGGTGA
Found at i:346136 original size:5 final size:5
Alignment explanation
Indices: 346126--346181 Score: 112
Period size: 5 Copynumber: 11.2 Consensus size: 5
346116 TCCTCCTTCC
346126 AGGCT AGGCT AGGCT AGGCT AGGCT AGGCT AGGCT AGGCT AGGCT AGGCT
1 AGGCT AGGCT AGGCT AGGCT AGGCT AGGCT AGGCT AGGCT AGGCT AGGCT
346176 AGGCT A
1 AGGCT A
346182 TAATAGAGCC
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 51 1.00
ACGTcount: A:0.21, C:0.20, G:0.39, T:0.20
Consensus pattern (5 bp):
AGGCT
Left flanking sequence: Indices 345626 -- 346125
CATTAATATTCTGTATGGATAGGTGGCCAGACGATCTAGAAACCATATGCCCTACCCTATAGTTC
TCTCTATCCGGCAAACATACATCTATATATGGGCTGGGCGGCCCAACCCCCAACCATATATAGAC
TATACCATACTATACCGTCGCATCCCCTATATCGGGAGGGCGATAGGGGTGAGTATGATCCGATA
CCCATATATCTATTCTATTCTCTATTATATATGTAATACAAATAGATCTGATCTAGATGGATAGC
TATCAGATCGCCCCCCCCCTCTCTCCGGCGAGAGAATAGAGGGGGTCGCCATAGACCATATAGTT
CAGGGCCCTCCATATAGAGAATTGAGAATTCTAGGGGATCCGATACCTATATATCTATTCTATTA
TGATTCTGGGGGGCCCTGAACTCTAGTCTGCCAGGATCAAACAGTAGGCCCCCCCTCTCTCCGGG
TGGGACCTACCAATTGTATTTCTATACTATAGATTTCCTCCTTCC
Right flanking sequence: Indices 346182 -- 346681
TAATAGAGCCGAGCCAGGATCAAACAGTAGGCATTGAACCTACCAACCGATACAGATATTCAGAT
TGGCTCGGCCCCAACCCTAACTCTATAGAGATCTAGATGGCATACATATCTATCTAGATGGCCCC
AACTCTCTAGATGGAGATGGATGGGGCCCCAACTATCTAGATGGCCCCAACTAGAGAGGAGAGTC
TAGGCCCCCTCCCCTATATTGATTGATATCTGTATTCCATCTATATATACCCGAGGGGCAAACAA
AACAAACCGGGACCCAACAACAATATATCTGTATTCCATCTATATATACCCGAGGGGCAAACAGG
ACCCAACTCTCCGTATTCTATATGCCCTATAGAAGCAGAGGGGCAAACAAAACAAACAAACCTAT
ATGGCACGGCACTGCATAAAGGAAATGCTCGCCATAGAATATAGAATAGAGATAGGGGCCCTCCC
CAGATATGGATAGGCCGCCCCGCCCCTATATAGATCAGATCAGAT
Found at i:347808 original size:16 final size:16
Alignment explanation
Indices: 347787--347817 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
347777 CAATACCAAT
347787 CGACTACCCAATACCC
1 CGACTACCCAATACCC
347803 CGACTACCCAATACC
1 CGACTACCCAATACC
347818 GGTAGGTGGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.32, C:0.48, G:0.06, T:0.13
Consensus pattern (16 bp):
CGACTACCCAATACCC
Left flanking sequence: Indices 347287 -- 347786
TGACTGCTCAACCATACTGTATTAAAACAAACACCGACCCCGGTAATCCATGTTCGAACTGGAGA
TATCTATGGCTTTCATCCGGAAAACACACCCCGGTGATCGATCTAATCTGAACTATGGGGAATCT
CCCGCCCTCGCCTGCCCTATACATATAACTGATTTGATTTCTATGGGTTTCGACTGGGCGCCACG
CCGATCCCCGTCTGTTCGAACTAGAAAGATCTATGGCTCAACATGACGTCATTGCGATAGATCTA
TTTAGTGAAGGCGGTGAGCTGCCGGCCGTATCATATCGCATAACCGGTTGACTATCTAGATCTAT
AGCTCATCCGCCCGGCTCGACGACTATCTATAGCTATAGTATATGGCCCATCTCCCAATATGGCA
ATCGATCATGCATCCGGGTATTATGTATGCATCCGCCCCCCCCCGTGAAACAAAGATTCATTCGG
TTCACAATGAATCATGAATGGGTAGGTGGTGGCACCAATACCAAT
Right flanking sequence: Indices 347818 -- 348317
GGTAGGTGGGTGGTGGCGCATCAATGGGCCTATATATCCATGGGGGGCCCGTACTCCCGGAATCG
ACCCCCCCATATAGAGAGTATAGATACGAAAACGATACGACCCCTCGTGATACATTGTTCACTGG
AGGCGGTCAACGATTTCGGTCGCCCCTCTATATGCATCTGCCGAGTGCCTCTCGGCCCTATCTTA
AAGAGGAAGGCCGAATAATCGAATCATATTACGTATGGTTTCTCTGTCCTCTGTTGCCAATCAGA
GAAAGTATATAGATATATCTCCTCCCTTCCCTCCTCCCCTTCCGAACCTGCCCCCTTTTCTTTTG
AGCTCGACTTGGCTCGACCTCCCAGATAGATCTATAGGGTCGCCGTCTATATGTATAGGGTGCCA
GTCATATATGTATAGATATATAGGCTAGGCTCGACCTCCCGAGCAGAACCACCCCCTATGAATTG
CCCTATCTATAGATATCTGCTGTCGCCATATCTATAGTTCAGGGT
Found at i:348201 original size:21 final size:22
Alignment explanation
Indices: 348175--348222 Score: 73
Period size: 21 Copynumber: 2.2 Consensus size: 22
348165 CAGATAGATC
348175 TATAGGGTCGCC-GTC-TATATG
1 TATAGGGT-GCCAGTCATATATG
348196 TATAGGGTGCCAGTCATATATG
1 TATAGGGTGCCAGTCATATATG
348218 TATAG
1 TATAG
348223 ATATATAGGC
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
20 3 0.12
21 11 0.44
22 11 0.44
ACGTcount: A:0.25, C:0.15, G:0.27, T:0.33
Consensus pattern (22 bp):
TATAGGGTGCCAGTCATATATG
Left flanking sequence: Indices 347675 -- 348174
CAATCGATCATGCATCCGGGTATTATGTATGCATCCGCCCCCCCCCGTGAAACAAAGATTCATTC
GGTTCACAATGAATCATGAATGGGTAGGTGGTGGCACCAATACCAATCGACTACCCAATACCCCG
ACTACCCAATACCGGTAGGTGGGTGGTGGCGCATCAATGGGCCTATATATCCATGGGGGGCCCGT
ACTCCCGGAATCGACCCCCCCATATAGAGAGTATAGATACGAAAACGATACGACCCCTCGTGATA
CATTGTTCACTGGAGGCGGTCAACGATTTCGGTCGCCCCTCTATATGCATCTGCCGAGTGCCTCT
CGGCCCTATCTTAAAGAGGAAGGCCGAATAATCGAATCATATTACGTATGGTTTCTCTGTCCTCT
GTTGCCAATCAGAGAAAGTATATAGATATATCTCCTCCCTTCCCTCCTCCCCTTCCGAACCTGCC
CCCTTTTCTTTTGAGCTCGACTTGGCTCGACCTCCCAGATAGATC
Right flanking sequence: Indices 348223 -- 348722
ATATATAGGCTAGGCTCGACCTCCCGAGCAGAACCACCCCCTATGAATTGCCCTATCTATAGATA
TCTGCTGTCGCCATATCTATAGTTCAGGGTAGGGGACCCTCCCCTCCAGATATAGCCCCTAGAAC
TCTATCTGGAGGGGAGGTTGAATATAGAGAGAGGGGGGATCTCCCCCGGCCCTCGACCCAACCCT
CTCCCGTTGGTCGCATGGGTATATAGGGGCGGCCCCCCTCCCTCTATATCTTCTCTCCCGGTGGC
CGGGGCCATCTCCCCAGTTCTCTCTATAGGGCCCATCTCCCATCTCTATTCTCTACGTGATACGA
CTGATATCACGCCGGGCTCTCGACCCCCCTCTCTCCATATGGGGAGAGCCCTTATTATATCTTAT
CTTATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCTTAT
CTGAGAGACCCTCGGGAGTCGAGTCTACTAATATCTATATCTGGA
Found at i:348615 original size:5 final size:5
Alignment explanation
Indices: 348605--348679 Score: 150
Period size: 5 Copynumber: 15.0 Consensus size: 5
348595 GCCCTTATTA
348605 TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT
1 TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT TATCT
348655 TATCT TATCT TATCT TATCT TATCT
1 TATCT TATCT TATCT TATCT TATCT
348680 GAGAGACCCT
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 70 1.00
ACGTcount: A:0.20, C:0.20, G:0.00, T:0.60
Consensus pattern (5 bp):
TATCT
Left flanking sequence: Indices 348105 -- 348604
TCCCTCCTCCCCTTCCGAACCTGCCCCCTTTTCTTTTGAGCTCGACTTGGCTCGACCTCCCAGAT
AGATCTATAGGGTCGCCGTCTATATGTATAGGGTGCCAGTCATATATGTATAGATATATAGGCTA
GGCTCGACCTCCCGAGCAGAACCACCCCCTATGAATTGCCCTATCTATAGATATCTGCTGTCGCC
ATATCTATAGTTCAGGGTAGGGGACCCTCCCCTCCAGATATAGCCCCTAGAACTCTATCTGGAGG
GGAGGTTGAATATAGAGAGAGGGGGGATCTCCCCCGGCCCTCGACCCAACCCTCTCCCGTTGGTC
GCATGGGTATATAGGGGCGGCCCCCCTCCCTCTATATCTTCTCTCCCGGTGGCCGGGGCCATCTC
CCCAGTTCTCTCTATAGGGCCCATCTCCCATCTCTATTCTCTACGTGATACGACTGATATCACGC
CGGGCTCTCGACCCCCCTCTCTCCATATGGGGAGAGCCCTTATTA
Right flanking sequence: Indices 348680 -- 349179
GAGAGACCCTCGGGAGTCGAGTCTACTAATATCTATATCTGGATAGGGTCCTTAGTCGACAACTC
ATATCGCGTATATATCTATGTTGCCTAACTCGACCCTGAACTATGGGGTGGGGGCCCCGGCTGCT
CATATCTATATCTGGAAGGGGAGGAGAGCCCTAATCTCTATATGGCTCAGGTTGGGAGAGCACCG
CTCCGCTCCCCTCCCCTCAGCTCCGCTCCGCTACCCGCACTCCCCCTCTATATAGAACTCATCTA
GGTCTAGGAACTCTAGAGAGGGCTCTTCTATTATATACGTGATAGAAGCAACCAGTGCATTACAT
ATATAGGGGAGAGGGCCGAGAGATAGACAGTGCTCTGCCTATGCCTATCCATATAGAGGGGATAT
GGGAGATATAGATAGGGGGCCCTATATATATATAGAACTGGGGATCCTAGAAATGCCCTCTAGTC
CCTCGGGGGCCCGACCCCTTCATTTCTAGGCCACCTCACCTATAT
Found at i:352048 original size:10 final size:10
Alignment explanation
Indices: 352033--352072 Score: 71
Period size: 10 Copynumber: 4.0 Consensus size: 10
352023 CTGGGGCGCC
352033 CCAATCTGTA
1 CCAATCTGTA
*
352043 CCAATCTATA
1 CCAATCTGTA
352053 CCAATCTGTA
1 CCAATCTGTA
352063 CCAATCTGTA
1 CCAATCTGTA
352073 GGCCGTTGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
10 28 1.00
ACGTcount: A:0.33, C:0.30, G:0.07, T:0.30
Consensus pattern (10 bp):
CCAATCTGTA
Left flanking sequence: Indices 351533 -- 352032
AGATGGGGGGCACTCCTCATCCTTCACTGACTGGGCACTCTGAATGAAGAATGACTGGGCACTCT
GAAGCCGATAGAGATGGGGGGCACTCCTCATCCCCAATCCGGAGGGGGCTTCAACAATATATAGA
TTGGGGTCGAGCTCAGAAGGGAGGGTCGGGGCCCCATCTATCTATATGGCCGGAGTACTCTATTC
TCTATAGCTGGCCGGACGCCCCATCTATCCCCTATACTATATAGAGAAGGGGGGCCCCGAACTCT
CCCGGGTCGGTCGAGCAGCTATATAGAGTCTGAGTATATAGAGTAGGGGAGTAGAATAGATATAT
CGAATTCTGCGGGCCGCCGGCCGGGCAGCCCCCTATCTATATAAGGCACTCGCCATATAGATAAG
ATAGGAAGATCTATAGGGGGGTGGGGGGGGCCTCCCCAGATAGATATAGTTGGCTCCTCGACTAT
ATAATCCATATCTAGTTGGCCCGCATGAATGCTATCTGGGGCGCC
Right flanking sequence: Indices 352073 -- 352572
GGCCGTTGGTCGATAGCATCCCCATATAGAGATAGGGGTTGCCATATATCTAATCTGAACTATAG
GGGTGGGGGGTGGCGGCTAGAGATAGAGGGCCATATAGATAGATGGGGCCGGGGATATGATATAT
AGGCATATAGAGAATCTATCTAGGGGGGGGCCGCATATATAGATAGGGCCTTCTCCCCCTCCTCT
CTTCTCGATAGATCAGAATACAGAATCAGAATGGTTCAGGGGGCCATATCTCATATCTGGGGCCC
AATCTCAATCGGGGCGGGGGAGGTTGAATATAGAGAGAGGGGGGATCTCCCCCCATCTCTATTCT
ATCTGGGGAGGCCCAATCTCAATATAGGGTAGGGCCATCGGGAGAGGGATCGATATGGGGCCTGC
TATATAGAGCCCCTCTATATGTAGATCTAGATAGGGGCCCGCCCATTATTCCATATTTGTTTGCG
CCGCCCCTTATCTATATGGCATAACCATAGAGCCCCCTATATAGA
Found at i:352734 original size:5 final size:5
Alignment explanation
Indices: 352724--352760 Score: 74
Period size: 5 Copynumber: 7.4 Consensus size: 5
352714 CCGTATCAAC
352724 TACAT TACAT TACAT TACAT TACAT TACAT TACAT TA
1 TACAT TACAT TACAT TACAT TACAT TACAT TACAT TA
352761 TTAGGCGATG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 32 1.00
ACGTcount: A:0.41, C:0.19, G:0.00, T:0.41
Consensus pattern (5 bp):
TACAT
Left flanking sequence: Indices 352224 -- 352723
AGGGGGGGGCCGCATATATAGATAGGGCCTTCTCCCCCTCCTCTCTTCTCGATAGATCAGAATAC
AGAATCAGAATGGTTCAGGGGGCCATATCTCATATCTGGGGCCCAATCTCAATCGGGGCGGGGGA
GGTTGAATATAGAGAGAGGGGGGATCTCCCCCCATCTCTATTCTATCTGGGGAGGCCCAATCTCA
ATATAGGGTAGGGCCATCGGGAGAGGGATCGATATGGGGCCTGCTATATAGAGCCCCTCTATATG
TAGATCTAGATAGGGGCCCGCCCATTATTCCATATTTGTTTGCGCCGCCCCTTATCTATATGGCA
TAACCATAGAGCCCCCTATATAGATTTTCGAGATAGATCAGTTGCCCATATGGCCATCAGTTGCT
CGAGAGATAGATCAGTTGCCCTATAGATCTATATGGCCGACCCCCCTATATCTCAATCTAATCTA
CGATACAAAAGAAAGGGAAGCCTGTCTATCTCCGGCCGTATCAAC
Right flanking sequence: Indices 352761 -- 353260
TTAGGCGATGGGGCTATCAAGATAAGGCCCAGATATAGCCCATATAGATAGAGAGGGGCCTAGCC
TAATATAGTTGAGTTGGCTCCTCTCCCCCCGATTCTCTATCTATGGCTATCGATCCCCTATCTAT
ATATGGCTCTCTCGATGGCCTGGGCCCTATCGGTCGGGGGCCTAAAGGAAGGTAAGGTCCTAACG
TCGCCTATGATATAGGGAGGGGGGTGCCCCAGATCGGGCCGAGCGCAGAAATGACCCGGGCCCCG
CATCATCTATCATCTATATACGTGATATGACTACCCATATCACGTATATAGATGATAGAGTAACG
CCTCGGAGAGCTATATAGAGTAGGCCGCTCGAGTGTGGGATTGAGCCCATATAGAGAGATCTGGC
GGTGATGGTTTGGTTTAATTCATAGTCGGTTCAGTCACAGTCGCGATATATCTATAGTAGAGAAT
GCGATTTGAAACAAACAAAAAAAAAGATTGGGTTTTGGCCCGGGG
Found at i:355591 original size:14 final size:14
Alignment explanation
Indices: 355572--355598 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
355562 GCTCCCCCCC
355572 CCCCCCCTCTCTCA
1 CCCCCCCTCTCTCA
355586 CCCCCCCTCTCTC
1 CCCCCCCTCTCTC
355599 TATATGGGTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.04, C:0.74, G:0.00, T:0.22
Consensus pattern (14 bp):
CCCCCCCTCTCTCA
Left flanking sequence: Indices 355072 -- 355571
TGTTCACCCGATCCATCTCTGCTCCGAGATGGACCTAGTAGCAGGCGAGCTTCCTTCCCCCCGCC
GGGTCCAATCTAGATTCCGGCAGGTGCTTGCATGCTTTCGAATCGAGGCGGCTTCGTCCCTTCAC
GGCTCATGCGACGAAGTGCTCCGAGGAGCCTTGGACAAGACACGAAAGGGCCCTCGACCCCCCAT
CCCCTTCTCTCCATCCTACGGTAGGGCTGGTCTGGTCGCTTCGCTCTCGACCTCCCCCCTCGCCG
TCTTCGTCTTCGAACCCGACGACTTCCAAGTCTATCCCGGTGGCCCTATATCTCATCTTAGACGG
ACGATCCGAGCCCGATCTTGCATCTCCCCCTTCACTTCACTCCCCTTCGCAAGCTCGCCCGGTCG
GCCCCCCTATCCCCAAAGGTTAGTGGATGGAATGCACGATGACGATCATGACGGACGCTCGCGCT
GTGGAAGGACGCCCCCCCCCTTATATCTTATCTCGGCTCCCCCCC
Right flanking sequence: Indices 355599 -- 356098
TATATGGGTGAGAGAGGGGGGGCGAGAGAGGGGCTCGGCTCCCAGATCTATATATAGGGGGGGAG
AGCCCAGGTAGATATCTGGGCATACCCCTGAACTCTAGATATGGCCAGTAGCCCATCCCAACTCC
CCAAGCCCATAACCAAGTATTGACGGGCGTCTTGATTCCCATTCCCAACTCCCTATCAGCCCCCT
CTATATAGATATATGGCAAGTGTTCATTCCCCCGTCTTGATTCCCGAATCAACAATGAGAGGAAT
AGAGGGATACCCCCGGGACGGAGCCGTATGACGCGAGAGTGTCACGTACGGTTCCTTTGAGAAGG
GTGTGATACCACCACCTATCAGGCCCGACGAGCGGTCCACGGAGCTGCATCCTTACTCACCCAGT
CTATGTACATTGCTCTTTCCAGGAGGTCGGCTGCCTATCCTAGATCTTCCCATATTCAAGAAGAT
CCCGGGCTCGATCTGGTCTAGTATCAAGGTGATTTTCTTTCTGTT
Found at i:356358 original size:18 final size:18
Alignment explanation
Indices: 356335--356486 Score: 146
Period size: 18 Copynumber: 9.1 Consensus size: 18
356325 CCCTCTCTAT
356335 TATATCTCTCTCTATATC
1 TATATCTCTCTCTATATC
356353 TATATCTCTCTCTATATC
1 TATATCTCTCTCTATATC
356371 TATATCTCTCTCTATA--
1 TATATCTCTCTCTATATC
* *
356387 GATATATCTCTC----TC
1 TATATCTCTCTCTATATC
**
356401 --TATCTCTCTCTATAGA
1 TATATCTCTCTCTATATC
356417 TATATCTCTCTC--TATC
1 TATATCTCTCTCTATATC
* * * *
356433 TCTCTCTATATCTA-ATC
1 TATATCTCTCTCTATATC
*
356450 TAGATCTCTCTCTATATC
1 TATATCTCTCTCTATATC
356468 TATATCTCTCTCTATATC
1 TATATCTCTCTCTATATC
356486 T
1 T
356487 CGGCTCTCTA
Statistics
Matches: 106, Mismatches: 17, Indels: 22
0.73 0.12 0.15
Matches are distributed among these distances:
12 9 0.08
16 20 0.19
17 12 0.11
18 65 0.61
ACGTcount: A:0.22, C:0.28, G:0.02, T:0.48
Consensus pattern (18 bp):
TATATCTCTCTCTATATC
Left flanking sequence: Indices 355835 -- 356334
TCCCGAATCAACAATGAGAGGAATAGAGGGATACCCCCGGGACGGAGCCGTATGACGCGAGAGTG
TCACGTACGGTTCCTTTGAGAAGGGTGTGATACCACCACCTATCAGGCCCGACGAGCGGTCCACG
GAGCTGCATCCTTACTCACCCAGTCTATGTACATTGCTCTTTCCAGGAGGTCGGCTGCCTATCCT
AGATCTTCCCATATTCAAGAAGATCCCGGGCTCGATCTGGTCTAGTATCAAGGTGATTTTCTTTC
TGTTCCTGTATATCCGGGTCCGTGCCGCATTTCCACGATATCGTTATGATCAATCAATGGGACTC
GGCCGGAAGGTCTTTTCGCCTCTGTCATTAGCTCGGGTAGTCTTCGTTTCCGGTGTTCTAGTCAC
CTTCCAATGGCTCCCTCACCGGTAGTATTCTCTGTCCTATCCAGTGTCTGGAGAAGGCTACTCCC
CGAAAATGCCCTTGTGAATTGTTGGGGATCGCCCCCCCTCTCTAT
Right flanking sequence: Indices 356487 -- 356986
CGGCTCTCTATTCTATCTGATCCCATAGAAGATAGAATAGAGAGCCGAGATATAATAGAGAGGGG
GGGGGGGGTTCCGCTATCGTGAGCCAGTCATCGTCATCTATTCTATATCTCCACCTCTATCTCTC
TATGTCCTGTCCCAACTGGATATGAATGGAATAACCCAATGGTCCTGCCTTACCCAATGGTCCGA
TTGGATTTCTCTTTCCATCGCCTAGGGGGATGGGGCTTCGTTCTCTCGGGTTGCTAGGACGATTG
ATATGAATAGAGAGAGGGGGAGAGAACCCGGGGGAGATCCCCCCTCTCTCTCTATTCAACCTCCC
CAGAACTATAGAGAGGGCGGGGGCCCTCTCTCTCTATTCAACCTCCCCCTCCCCAGATAGAATAG
AGAGGGCGGGGGCCCTCTCTCTCTATTCAACCTCCCCCAGATCTATAGAGAGGGGCCCAACCCCC
CTATCTATATATGGTTCGAATCGAAGGGGAGGAAAGGAGGATAGA
Found at i:356413 original size:28 final size:28
Alignment explanation
Indices: 356373--356442 Score: 140
Period size: 28 Copynumber: 2.5 Consensus size: 28
356363 TCTATATCTA
356373 TATCTCTCTCTATAGATATATCTCTCTC
1 TATCTCTCTCTATAGATATATCTCTCTC
356401 TATCTCTCTCTATAGATATATCTCTCTC
1 TATCTCTCTCTATAGATATATCTCTCTC
356429 TATCTCTCTCTATA
1 TATCTCTCTCTATA
356443 TCTAATCTAG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 42 1.00
ACGTcount: A:0.21, C:0.29, G:0.03, T:0.47
Consensus pattern (28 bp):
TATCTCTCTCTATAGATATATCTCTCTC
Left flanking sequence: Indices 355873 -- 356372
GGGACGGAGCCGTATGACGCGAGAGTGTCACGTACGGTTCCTTTGAGAAGGGTGTGATACCACCA
CCTATCAGGCCCGACGAGCGGTCCACGGAGCTGCATCCTTACTCACCCAGTCTATGTACATTGCT
CTTTCCAGGAGGTCGGCTGCCTATCCTAGATCTTCCCATATTCAAGAAGATCCCGGGCTCGATCT
GGTCTAGTATCAAGGTGATTTTCTTTCTGTTCCTGTATATCCGGGTCCGTGCCGCATTTCCACGA
TATCGTTATGATCAATCAATGGGACTCGGCCGGAAGGTCTTTTCGCCTCTGTCATTAGCTCGGGT
AGTCTTCGTTTCCGGTGTTCTAGTCACCTTCCAATGGCTCCCTCACCGGTAGTATTCTCTGTCCT
ATCCAGTGTCTGGAGAAGGCTACTCCCCGAAAATGCCCTTGTGAATTGTTGGGGATCGCCCCCCC
TCTCTATTATATCTCTCTCTATATCTATATCTCTCTCTATATCTA
Right flanking sequence: Indices 356443 -- 356942
TCTAATCTAGATCTCTCTCTATATCTATATCTCTCTCTATATCTCGGCTCTCTATTCTATCTGAT
CCCATAGAAGATAGAATAGAGAGCCGAGATATAATAGAGAGGGGGGGGGGGGTTCCGCTATCGTG
AGCCAGTCATCGTCATCTATTCTATATCTCCACCTCTATCTCTCTATGTCCTGTCCCAACTGGAT
ATGAATGGAATAACCCAATGGTCCTGCCTTACCCAATGGTCCGATTGGATTTCTCTTTCCATCGC
CTAGGGGGATGGGGCTTCGTTCTCTCGGGTTGCTAGGACGATTGATATGAATAGAGAGAGGGGGA
GAGAACCCGGGGGAGATCCCCCCTCTCTCTCTATTCAACCTCCCCAGAACTATAGAGAGGGCGGG
GGCCCTCTCTCTCTATTCAACCTCCCCCTCCCCAGATAGAATAGAGAGGGCGGGGGCCCTCTCTC
TCTATTCAACCTCCCCCAGATCTATAGAGAGGGGCCCAACCCCCC
Found at i:356460 original size:23 final size:24
Alignment explanation
Indices: 356430--356474 Score: 83
Period size: 23 Copynumber: 1.9 Consensus size: 24
356420 ATCTCTCTCT
356430 ATCTCTCTCTATATCTA-ATCTAG
1 ATCTCTCTCTATATCTATATCTAG
356453 ATCTCTCTCTATATCTATATCT
1 ATCTCTCTCTATATCTATATCT
356475 CTCTCTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
23 17 0.81
24 4 0.19
ACGTcount: A:0.24, C:0.27, G:0.02, T:0.47
Consensus pattern (24 bp):
ATCTCTCTCTATATCTATATCTAG
Left flanking sequence: Indices 355930 -- 356429
TACCACCACCTATCAGGCCCGACGAGCGGTCCACGGAGCTGCATCCTTACTCACCCAGTCTATGT
ACATTGCTCTTTCCAGGAGGTCGGCTGCCTATCCTAGATCTTCCCATATTCAAGAAGATCCCGGG
CTCGATCTGGTCTAGTATCAAGGTGATTTTCTTTCTGTTCCTGTATATCCGGGTCCGTGCCGCAT
TTCCACGATATCGTTATGATCAATCAATGGGACTCGGCCGGAAGGTCTTTTCGCCTCTGTCATTA
GCTCGGGTAGTCTTCGTTTCCGGTGTTCTAGTCACCTTCCAATGGCTCCCTCACCGGTAGTATTC
TCTGTCCTATCCAGTGTCTGGAGAAGGCTACTCCCCGAAAATGCCCTTGTGAATTGTTGGGGATC
GCCCCCCCTCTCTATTATATCTCTCTCTATATCTATATCTCTCTCTATATCTATATCTCTCTCTA
TAGATATATCTCTCTCTATCTCTCTCTATAGATATATCTCTCTCT
Right flanking sequence: Indices 356475 -- 356974
CTCTCTATATCTCGGCTCTCTATTCTATCTGATCCCATAGAAGATAGAATAGAGAGCCGAGATAT
AATAGAGAGGGGGGGGGGGGTTCCGCTATCGTGAGCCAGTCATCGTCATCTATTCTATATCTCCA
CCTCTATCTCTCTATGTCCTGTCCCAACTGGATATGAATGGAATAACCCAATGGTCCTGCCTTAC
CCAATGGTCCGATTGGATTTCTCTTTCCATCGCCTAGGGGGATGGGGCTTCGTTCTCTCGGGTTG
CTAGGACGATTGATATGAATAGAGAGAGGGGGAGAGAACCCGGGGGAGATCCCCCCTCTCTCTCT
ATTCAACCTCCCCAGAACTATAGAGAGGGCGGGGGCCCTCTCTCTCTATTCAACCTCCCCCTCCC
CAGATAGAATAGAGAGGGCGGGGGCCCTCTCTCTCTATTCAACCTCCCCCAGATCTATAGAGAGG
GGCCCAACCCCCCTATCTATATATGGTTCGAATCGAAGGGGAGGA
Found at i:356841 original size:47 final size:47
Alignment explanation
Indices: 356788--356930 Score: 187
Period size: 54 Copynumber: 2.9 Consensus size: 47
356778 GGGAGATCCC
356788 CCCTCTCTCTCTATTCAACCTCCCCAGAACTATAGAGAGGGCGGGGG
1 CCCTCTCTCTCTATTCAACCTCCCCAGAACTATAGAGAGGGCGGGGG
**
356835 CCCTCTCTCTCTATTCAACCTCCCCCTCCCCAGATAGAATAGAGAGGGCGGGGG
1 CCCTCTCTCTCTATTCAA------CCTCCCCAGA-ACTATAGAGAGGGCGGGGG
*
356889 CCCTCTCTCTCTATTCAACCTCCCCCAGATCTATAGAGAGGG
1 CCCTCTCTCTCTATTCAACCT-CCCCAGAACTATAGAGAGGG
356931 GCCCAACCCC
Statistics
Matches: 83, Mismatches: 5, Indels: 15
0.81 0.05 0.15
Matches are distributed among these distances:
47 18 0.22
48 13 0.16
49 7 0.08
53 10 0.12
54 35 0.42
ACGTcount: A:0.21, C:0.36, G:0.20, T:0.22
Consensus pattern (47 bp):
CCCTCTCTCTCTATTCAACCTCCCCAGAACTATAGAGAGGGCGGGGG
Left flanking sequence: Indices 356288 -- 356787
CCCGAAAATGCCCTTGTGAATTGTTGGGGATCGCCCCCCCTCTCTATTATATCTCTCTCTATATC
TATATCTCTCTCTATATCTATATCTCTCTCTATAGATATATCTCTCTCTATCTCTCTCTATAGAT
ATATCTCTCTCTATCTCTCTCTATATCTAATCTAGATCTCTCTCTATATCTATATCTCTCTCTAT
ATCTCGGCTCTCTATTCTATCTGATCCCATAGAAGATAGAATAGAGAGCCGAGATATAATAGAGA
GGGGGGGGGGGGTTCCGCTATCGTGAGCCAGTCATCGTCATCTATTCTATATCTCCACCTCTATC
TCTCTATGTCCTGTCCCAACTGGATATGAATGGAATAACCCAATGGTCCTGCCTTACCCAATGGT
CCGATTGGATTTCTCTTTCCATCGCCTAGGGGGATGGGGCTTCGTTCTCTCGGGTTGCTAGGACG
ATTGATATGAATAGAGAGAGGGGGAGAGAACCCGGGGGAGATCCC
Right flanking sequence: Indices 356931 -- 357430
GCCCAACCCCCCTATCTATATATGGTTCGAATCGAAGGGGAGGAAAGGAGGATAGATATAGAACT
GGCAAAAAGAACTATAGAGAGGGGGGCCGCCCCCGAAGAATGAGGGGGAGGGGGCGGGTCTACTA
TAGAGAGTAGATAGGCCCCGACCCCGTGCCTATTGATTGCGCCGTAGGCCGCCCGATCTATATAT
AGCCATAGCCGGGGCCAACTAAACTCTCTCTATATAGTCGAGGAGGGCCCCGGCCCATATAGATA
TCTATATCTGGGAGGGAATTCTCTATTCTATAACTATAGATAGTCGGGGACCGGGGGCCAACTAA
ACTTCTATAGCCTAGCCGCCTTCCCCCTCGATTGATAACAAACATCGCATATAGATATTGGGCAC
TCGGGGCACAATCTCGAACTAGTATCGTCTTAGAGTAGGGGCGGGAGAGATATGCGCTCTTACTA
TCGGCGGAATAGAATATCTATCCGCAGAGAGAACCGGAGAGAAGA
Found at i:356877 original size:54 final size:53
Alignment explanation
Indices: 356806--356914 Score: 191
Period size: 54 Copynumber: 2.0 Consensus size: 53
356796 CTCTATTCAA
*
356806 CCTCCCCAGAACTATAGAGAGGGCGGGGGCCCTCTCTCTCTATTCAACCTCCC
1 CCTCCCCAGAACAATAGAGAGGGCGGGGGCCCTCTCTCTCTATTCAACCTCCC
*
356859 CCTCCCCAGATAGAATAGAGAGGGCGGGGGCCCTCTCTCTCTATTCAACCTCCC
1 CCTCCCCAGA-ACAATAGAGAGGGCGGGGGCCCTCTCTCTCTATTCAACCTCCC
356913 CC
1 CC
356915 AGATCTATAG
Statistics
Matches: 53, Mismatches: 2, Indels: 1
0.95 0.04 0.02
Matches are distributed among these distances:
53 10 0.19
54 43 0.81
ACGTcount: A:0.19, C:0.39, G:0.21, T:0.20
Consensus pattern (53 bp):
CCTCCCCAGAACAATAGAGAGGGCGGGGGCCCTCTCTCTCTATTCAACCTCCC
Left flanking sequence: Indices 356306 -- 356805
AATTGTTGGGGATCGCCCCCCCTCTCTATTATATCTCTCTCTATATCTATATCTCTCTCTATATC
TATATCTCTCTCTATAGATATATCTCTCTCTATCTCTCTCTATAGATATATCTCTCTCTATCTCT
CTCTATATCTAATCTAGATCTCTCTCTATATCTATATCTCTCTCTATATCTCGGCTCTCTATTCT
ATCTGATCCCATAGAAGATAGAATAGAGAGCCGAGATATAATAGAGAGGGGGGGGGGGGTTCCGC
TATCGTGAGCCAGTCATCGTCATCTATTCTATATCTCCACCTCTATCTCTCTATGTCCTGTCCCA
ACTGGATATGAATGGAATAACCCAATGGTCCTGCCTTACCCAATGGTCCGATTGGATTTCTCTTT
CCATCGCCTAGGGGGATGGGGCTTCGTTCTCTCGGGTTGCTAGGACGATTGATATGAATAGAGAG
AGGGGGAGAGAACCCGGGGGAGATCCCCCCTCTCTCTCTATTCAA
Right flanking sequence: Indices 356915 -- 357414
AGATCTATAGAGAGGGGCCCAACCCCCCTATCTATATATGGTTCGAATCGAAGGGGAGGAAAGGA
GGATAGATATAGAACTGGCAAAAAGAACTATAGAGAGGGGGGCCGCCCCCGAAGAATGAGGGGGA
GGGGGCGGGTCTACTATAGAGAGTAGATAGGCCCCGACCCCGTGCCTATTGATTGCGCCGTAGGC
CGCCCGATCTATATATAGCCATAGCCGGGGCCAACTAAACTCTCTCTATATAGTCGAGGAGGGCC
CCGGCCCATATAGATATCTATATCTGGGAGGGAATTCTCTATTCTATAACTATAGATAGTCGGGG
ACCGGGGGCCAACTAAACTTCTATAGCCTAGCCGCCTTCCCCCTCGATTGATAACAAACATCGCA
TATAGATATTGGGCACTCGGGGCACAATCTCGAACTAGTATCGTCTTAGAGTAGGGGCGGGAGAG
ATATGCGCTCTTACTATCGGCGGAATAGAATATCTATCCGCAGAG
Found at i:357537 original size:14 final size:14
Alignment explanation
Indices: 357518--357554 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
357508 TCCAAACCGG
357518 TATATATATAGATC
1 TATATATATAGATC
* *
357532 TATATAGATATATC
1 TATATATATAGATC
357546 TATATATAT
1 TATATATAT
357555 CTACAATCGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.43, C:0.05, G:0.05, T:0.46
Consensus pattern (14 bp):
TATATATATAGATC
Left flanking sequence: Indices 357018 -- 357517
GGGGCCGCCCCCGAAGAATGAGGGGGAGGGGGCGGGTCTACTATAGAGAGTAGATAGGCCCCGAC
CCCGTGCCTATTGATTGCGCCGTAGGCCGCCCGATCTATATATAGCCATAGCCGGGGCCAACTAA
ACTCTCTCTATATAGTCGAGGAGGGCCCCGGCCCATATAGATATCTATATCTGGGAGGGAATTCT
CTATTCTATAACTATAGATAGTCGGGGACCGGGGGCCAACTAAACTTCTATAGCCTAGCCGCCTT
CCCCCTCGATTGATAACAAACATCGCATATAGATATTGGGCACTCGGGGCACAATCTCGAACTAG
TATCGTCTTAGAGTAGGGGCGGGAGAGATATGCGCTCTTACTATCGGCGGAATAGAATATCTATC
CGCAGAGAGAACCGGAGAGAAGAGCGTATAGATATAGGGGCCTCTCCAAGTCTATATATATTCAA
TCGAGTCCCCGGCAGTATGAAGATTGTAATACACGTCCAAACCGG
Right flanking sequence: Indices 357555 -- 358054
CTACAATCGGCACGAGATCTCTGCAAGTTATAGAGATATAGGGCCGGGCGCCCTATCTATATATC
TCGGGCACCGCATCAGATATATAGATAGATAGGAGCCATAGAATCTATATATGGCTCGGCCGAGT
ACCGGGGAAGGTCAGCTCATCGCCCCGGCAGTCCAGTCCCACTATATAGATATTCTATATATGGG
TCCATTCCATACCCGCCTATCTATATGGCTTCCCAATGGCTAATCCCTATCTATATATTCTCTAT
CTGCCCATATAGAGAGAGGGGGTCGGCCATATCTATAGAGAGGGGGGGCAGTCATATGATCCGCC
CCTCTATATATATGGGGATCCCTCTATATATATATGATATGTGCCGGGCGAAACAGCCATAGAGA
ACGGAATCGACTATGACTAACAGATAGAGATGAGATACGCATGCCGAGGTACTGCTTGCAACTAT
CGTTTCCGCCCTACCATCTATATGGGGTTCTGGGATCTGTTGCGG
Found at i:358412 original size:5 final size:5
Alignment explanation
Indices: 358404--358465 Score: 124
Period size: 5 Copynumber: 12.4 Consensus size: 5
358394 TATATAATAA
358404 TGGGT TGGGT TGGGT TGGGT TGGGT TGGGT TGGGT TGGGT TGGGT TGGGT
1 TGGGT TGGGT TGGGT TGGGT TGGGT TGGGT TGGGT TGGGT TGGGT TGGGT
358454 TGGGT TGGGT TG
1 TGGGT TGGGT TG
358466 TTACTGGTCT
Statistics
Matches: 57, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 57 1.00
ACGTcount: A:0.00, C:0.00, G:0.60, T:0.40
Consensus pattern (5 bp):
TGGGT
Left flanking sequence: Indices 357904 -- 358403
TATATATATATGATATGTGCCGGGCGAAACAGCCATAGAGAACGGAATCGACTATGACTAACAGA
TAGAGATGAGATACGCATGCCGAGGTACTGCTTGCAACTATCGTTTCCGCCCTACCATCTATATG
GGGTTCTGGGATCTGTTGCGGTTCCTTCTTCGATGAGATGGATACGAGCCAGATCTAGTCTCGAT
AACAGATGAATACGATGTATCGCCCCTAGTCTCTATAGTCGCCGGGTACGAGGAACACCGGTGCG
GAGGGCACAGGTACGAAGAGAGGAGAAATCTCTATTCTCTACGAACGCGAGCCATGATGCTTGCT
CTGTCTATCTATATATATGGCGGTGAATCGGCTTCCCGCAGATCTCTATATAGGGTAGGGTAGGG
CCCGATACCGGATGGTTCGGTGAATCCAGATGCTTCCTAGATCTATATGGAGGGCCAGTTCGGTG
AGCCGGTGAATAGTCACTTACCACTTAATATAATATATATAATAA
Right flanking sequence: Indices 358466 -- 358965
TTACTGGTCTGGCCCCTATCTATATAGATATTGCATCCATCGCCCCAGGTTGTATCACGTATAGA
ATGAGGGCCCGGGGTTGGGTTGTTACGATTAGATTCTATTATAGCTGGGAGATTAGAGGGGAGAG
TGCCCCCCAGATCAGATAGAGTACCAACCACCCTTATGATTTCTGTCTGTCCCAACCCCCAACCG
CAATATGTCTGGAGTGTCCGTGTACCACTTCCCCGACCAACCTTGAGTTTAGGGATATCGGTAGT
CTAATCTAATCGCCCCAACCTTCTGATTGATTTCTGTCTGGACATCTACATCTATATATATCTAT
AGAAATCTATAGATATATGGCCTTCTGAGCAGAGCCCCTGTATCTATATCTGGGTTTATGCCTAA
TCTTGAGGTTTCTCTATCGCCCAAACCCCTCTAGATTTCTCTGGGCATATAGACCGGGGGGAGGG
AGGCGACAAAGATATATCTGAGGAACATGAATGAAGAATTCTAGA
Found at i:359056 original size:5 final size:5
Alignment explanation
Indices: 359046--359075 Score: 51
Period size: 5 Copynumber: 6.0 Consensus size: 5
359036 CTAAGATATA
*
359046 GAGCC GAGCC GAGCC GAGCT GAGCC GAGCC
1 GAGCC GAGCC GAGCC GAGCC GAGCC GAGCC
359076 CCTATCTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.20, C:0.37, G:0.40, T:0.03
Consensus pattern (5 bp):
GAGCC
Left flanking sequence: Indices 358546 -- 359045
TGGGTTGTTACGATTAGATTCTATTATAGCTGGGAGATTAGAGGGGAGAGTGCCCCCCAGATCAG
ATAGAGTACCAACCACCCTTATGATTTCTGTCTGTCCCAACCCCCAACCGCAATATGTCTGGAGT
GTCCGTGTACCACTTCCCCGACCAACCTTGAGTTTAGGGATATCGGTAGTCTAATCTAATCGCCC
CAACCTTCTGATTGATTTCTGTCTGGACATCTACATCTATATATATCTATAGAAATCTATAGATA
TATGGCCTTCTGAGCAGAGCCCCTGTATCTATATCTGGGTTTATGCCTAATCTTGAGGTTTCTCT
ATCGCCCAAACCCCTCTAGATTTCTCTGGGCATATAGACCGGGGGGAGGGAGGCGACAAAGATAT
ATCTGAGGAACATGAATGAAGAATTCTAGATATAGATCTTGTTCCGGGTGCATAGAATAGAAGAC
ACTGGGGAGGGTCCCCGCCACACCCTCCCAGTTCTCTAAGATATA
Right flanking sequence: Indices 359076 -- 359575
CCTATCTCTATATAGATCTGGGAGCCGAGAAATCTAGAGAGGGGGGGGGGCACCCCACCCAATAA
GATATAGATATAGATATAGATATAGATATAGATATAGATATAGATATAGAACAAGGGGGGCATAT
ATAGATAGGGGAGAACCACAGATATAGAGAGGGCCTAAGAATCAATCAATCAATCTTTTCTATAT
AGCTCGAGGAGATCTGGGGCCCCAGATCTATATACTCATCGGGTTTCAAGCCGGACGGTCGAGGA
ATCACTCGGCTGGGTTGGTTATATGGATAGGGGATAGGGGCCGGACAAGGCTCAGAGATCTGTCC
GACCTAACCTAATAGAATAGTGGGCCCCCTATCTCTATATGGCCCCAGATCTAGATAGGGCCTAG
AGCCCGAGCTAAGCTGCGAGTGCGGCTATATATCTATATCATGAATGTGAATGTGAACCTATGCC
GCCGGATGCGCCCTCCCCTATATAGAGTCTAGTGGATGCGGAGAG
Found at i:359151 original size:6 final size:6
Alignment explanation
Indices: 359140--359190 Score: 102
Period size: 6 Copynumber: 8.5 Consensus size: 6
359130 CCACCCAATA
359140 AGATAT AGATAT AGATAT AGATAT AGATAT AGATAT AGATAT AGATAT
1 AGATAT AGATAT AGATAT AGATAT AGATAT AGATAT AGATAT AGATAT
359188 AGA
1 AGA
359191 ACAAGGGGGG
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 45 1.00
ACGTcount: A:0.51, C:0.00, G:0.18, T:0.31
Consensus pattern (6 bp):
AGATAT
Left flanking sequence: Indices 358640 -- 359139
GTCTGTCCCAACCCCCAACCGCAATATGTCTGGAGTGTCCGTGTACCACTTCCCCGACCAACCTT
GAGTTTAGGGATATCGGTAGTCTAATCTAATCGCCCCAACCTTCTGATTGATTTCTGTCTGGACA
TCTACATCTATATATATCTATAGAAATCTATAGATATATGGCCTTCTGAGCAGAGCCCCTGTATC
TATATCTGGGTTTATGCCTAATCTTGAGGTTTCTCTATCGCCCAAACCCCTCTAGATTTCTCTGG
GCATATAGACCGGGGGGAGGGAGGCGACAAAGATATATCTGAGGAACATGAATGAAGAATTCTAG
ATATAGATCTTGTTCCGGGTGCATAGAATAGAAGACACTGGGGAGGGTCCCCGCCACACCCTCCC
AGTTCTCTAAGATATAGAGCCGAGCCGAGCCGAGCTGAGCCGAGCCCCTATCTCTATATAGATCT
GGGAGCCGAGAAATCTAGAGAGGGGGGGGGGCACCCCACCCAATA
Right flanking sequence: Indices 359191 -- 359690
ACAAGGGGGGCATATATAGATAGGGGAGAACCACAGATATAGAGAGGGCCTAAGAATCAATCAAT
CAATCTTTTCTATATAGCTCGAGGAGATCTGGGGCCCCAGATCTATATACTCATCGGGTTTCAAG
CCGGACGGTCGAGGAATCACTCGGCTGGGTTGGTTATATGGATAGGGGATAGGGGCCGGACAAGG
CTCAGAGATCTGTCCGACCTAACCTAATAGAATAGTGGGCCCCCTATCTCTATATGGCCCCAGAT
CTAGATAGGGCCTAGAGCCCGAGCTAAGCTGCGAGTGCGGCTATATATCTATATCATGAATGTGA
ATGTGAACCTATGCCGCCGGATGCGCCCTCCCCTATATAGAGTCTAGTGGATGCGGAGAGCCGCC
ATCTATCTAGACTCTATATAGGGGAGAGCGGAGCGCCCCCTCTCTCTATATGGGTGCCCAGATAT
CCCTCTCTCTATATTCCATCAGCCCCCTCTCTATAGATATGGGCA
Found at i:360044 original size:21 final size:21
Alignment explanation
Indices: 359988--360045 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
359978 ATCGAGCTAG
*
359988 TCTATATGGCTAGCGTCTCTA
1 TCTATCTGGCTAGCGTCTCTA
** * *
360009 TCTGGCTGTCGAGCGTCTCTA
1 TCTATCTGGCTAGCGTCTCTA
360030 TCTATCTGGCTAGCGT
1 TCTATCTGGCTAGCGT
360046 ATAGAGATGG
Statistics
Matches: 28, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.14, C:0.26, G:0.24, T:0.36
Consensus pattern (21 bp):
TCTATCTGGCTAGCGTCTCTA
Left flanking sequence: Indices 359488 -- 359987
CGGCTATATATCTATATCATGAATGTGAATGTGAACCTATGCCGCCGGATGCGCCCTCCCCTATA
TAGAGTCTAGTGGATGCGGAGAGCCGCCATCTATCTAGACTCTATATAGGGGAGAGCGGAGCGCC
CCCTCTCTCTATATGGGTGCCCAGATATCCCTCTCTCTATATTCCATCAGCCCCCTCTCTATAGA
TATGGGCACCCAGATATCACTCCTTCGGAGAGAATGAAGACATCTATCTCATGCCCCTATCTATA
GATCTGCCCTCTCTAACTATATGGGTGCCAACTGATCTCCCTCTCTATATATTCCATCAGGAAGC
CAGATATCCCTCTCTCTATATATCTCTATCTCCATCTATCTCGTGCCATATAGAAGTGTACCAAC
CAAGCCGTAGCTCTATATGAGTGTGCCCATCTATCTTGTATTTAAGTGAACCAACTTCTCTAGTA
CCATCGGCCCTCTCTCTCTATATGGGTACCAACCAATCGAGCTAG
Right flanking sequence: Indices 360046 -- 360545
ATAGAGATGGCGTATCTGGATGGCTAGCTAGTCTATCTATCTATCTAATCTATCTGGCGTAGATG
GATGGCTAGCGTCTCTGGATGGCTATCTATATGGCTAGCGTCTCTATCTGGCGTATCCATCTATC
TGGCGTATCTATCCGATCAGCTACGAACCCCTCTAGAACTATAGGCACCTAACCCTATATATAGA
TAGATATGGCGAGCAGCAGATATGGGATATGGGACGATCCATATCTATATATAGGCGAACCGAAG
CGACGAACATGAGATATATAGATAGGGCCATATCTATAGTTCTATCTGGGGGCGGCTATGGATCT
AGTTTAGTTGGGTTGGGCCGGGCAGCCTGCCTATATATAGATCGATCTTCTCTCGAGAAAGGACA
TCCAGGCACTCCCACGCCCCTTCTATATAGGCGGGCCCCCTATCTATGCTCAATCAGTTCTATAT
AGAGGGCTGGGGTGGGGCACAGTATATAGTTTCATTCGAGGGGCT
Found at i:360750 original size:4 final size:4
Alignment explanation
Indices: 360741--360767 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
360731 TGCCCATGCC
360741 ATAG ATAG ATAG ATAG ATAG ATAG ATA
1 ATAG ATAG ATAG ATAG ATAG ATAG ATA
360768 TATGGGGTGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.22, T:0.26
Consensus pattern (4 bp):
ATAG
Left flanking sequence: Indices 360241 -- 360740
TAGATATGGCGAGCAGCAGATATGGGATATGGGACGATCCATATCTATATATAGGCGAACCGAAG
CGACGAACATGAGATATATAGATAGGGCCATATCTATAGTTCTATCTGGGGGCGGCTATGGATCT
AGTTTAGTTGGGTTGGGCCGGGCAGCCTGCCTATATATAGATCGATCTTCTCTCGAGAAAGGACA
TCCAGGCACTCCCACGCCCCTTCTATATAGGCGGGCCCCCTATCTATGCTCAATCAGTTCTATAT
AGAGGGCTGGGGTGGGGCACAGTATATAGTTTCATTCGAGGGGCTCCCTCTTCAACCACCTCTAG
AGTCGGGTGCCGACTATATCTATTCTATATACCAACCACATAGCCGCCGCGGTCGAGTATCGGTC
GAGCCATATATGGATAGGGCCATCCATCTAGACTCTATACGCGACCGACCATATATCTGTCGCTG
TCGATATAGAGGGGGGGCTGATGACTGATGACTGATGCCCATGCC
Right flanking sequence: Indices 360768 -- 361267
TATGGGGTGGGGCCCTATAGTTCTTTCCCAGTGATGCAGTCCATTCCATACCTTGAACCGTGAAC
CGCTCGAACTGGCCCCAAGATCTATAGATAGGCCGCCCCTCTATCTATATAGGCTGGCTGGCGGA
TAGATGTTTGAACACCCGACCCCTCCCTATATATAGAAGCCTGACTGACTAGAGAAGGGTGAATA
TGAGATGCGAGTGCGGCTATAGCCTATAGTCAACAAGCAGATAGATACCCAGTATACTGTAGATG
GGGGCCCAACTAGTGACTCTATATGAACCAGTAACTATATAGATGTCGAGGGAGACTATCGGGCA
TCTCCCTTCATATCCATGGCGACCCTACCCTACATGGGAATGGGAGATCGAGGCACCCTATATGT
ATAGATATCCTCATCCGGCGGATCCGAAGAATCATCCGGCCATATCCATATCTATATAGGGGGGG
GCGGATTAGCCATTGTTCAGCTCTGCATCCGGCCCTATATATAGA
Found at i:361989 original size:2 final size:2
Alignment explanation
Indices: 361982--362019 Score: 58
Period size: 2 Copynumber: 19.0 Consensus size: 2
361972 GGGCACCCCC
* *
361982 TA TA TA TA GA TA TA TA TC TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
362020 CATCTGGCAG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.47
Consensus pattern (2 bp):
TA
Left flanking sequence: Indices 361482 -- 361981
CGGCCCCCCCCCTCTATATAGATCTCGGCTCCCAGATCTATATAGAGATAGGGGCTCGGCTCCCA
TCTCTCTATAGGGGGGGCTATGATGTGGATATGGAACCTGGGCTCCGATCAAGCAAGATAAGCTG
ACCCATTCTCCCACCGGCCCCTCTATCTATATCTGGCCATGACGTATATCTATATCTAGTACCGG
CCCCTATATAGATATATATATATCTCTCGGAGACGAGACTGACCCCTCAGAGATATATCTATATA
GGGCCAGATAGATCTATAGGGGCTTCGGATAGATAGAGAGTCGGGCGGCTGCCCAGATAGAGTTG
ATAGGATATATAGAGAGAGAGGGGGGGCCAGATATAGATATATAGGCCAGATAGTCATCTACATG
ATCGAATGGATTGATTATATACGTAACATGATCTGAATCACGTCCACTCGGTCCGATAGAAGCGC
GTCCATCCCATCGTTCAGATCTACACTTCGCGGAGGGGCACCCCC
Right flanking sequence: Indices 362020 -- 362519
CATCTGGCAGTCCACCCCCTCTATATAGGCAGATAGAATATAGGGCTGATTCTAGATAGTCCCCC
CCACTGCCCACTGTATATATCTCATCTCCTCCCGGGCATAAAGCCATATATAGATAGGGCCTGAA
GATATAGAGCCGCCATCGGGAACCCGGTCCTACTTATAGAATGTTGGTTCTTCCTTACCCCCGGT
CCCACCTGCCACGAAGATATAGAGAGAGGGCCGGTTACGGTTAGGTTATAATGGAAGGGGAAGGA
ATCTCTTCCCACCGATCTAGAGGAGGTCGCGGCCAGGCCATATATATGGTAGGGCGCCCTATCTC
TATTCTCCAGCGCCCTATGGGGGAGATCCCGAGTCGACCGGGGGCGAATCAATCTAATTGACGGC
GACGGCCAGCCTCCACTATATAGCCACGGCGTTCCCCTATCTCTCTATGGGGGACTCGACGGACC
CCCTGAATTGTTCCCCTAGATAGAGAACTGGGACCCCTATAGAGA
Found at i:362867 original size:21 final size:21
Alignment explanation
Indices: 362841--362883 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
362831 TGGTTCACTA
362841 CGCCCATATATATAGATAGGG
1 CGCCCATATATATAGATAGGG
362862 CGCCCATATATATAGATAGGG
1 CGCCCATATATATAGATAGGG
362883 C
1 C
362884 AACTCGAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (21 bp):
CGCCCATATATATAGATAGGG
Left flanking sequence: Indices 362341 -- 362840
TCTCTATTCTCCAGCGCCCTATGGGGGAGATCCCGAGTCGACCGGGGGCGAATCAATCTAATTGA
CGGCGACGGCCAGCCTCCACTATATAGCCACGGCGTTCCCCTATCTCTCTATGGGGGACTCGACG
GACCCCCTGAATTGTTCCCCTAGATAGAGAACTGGGACCCCTATAGAGAGATATGGCGCCCCTAT
AGAAAATAGAAGCGTCTCAAGTCGAGGGGCGATAGAGATATAGGGCATCCGGCCGCATCGCATCG
AGCCCCGGCTGTCCTTCTCCACAGCCCCCCTCTCTATGGGGCTAGCCAATGAATGTTAACTAGCC
AATGAATCAGCTCCTGCTTGAGCCATAGATATAGATGGGCCCCGCTTATATAGATAGGGATAGAT
AGATGGGGCTGCGAGAGTCAATCCCACACAGCTTAATCTATATGATATGCATGCCGCCCCCTCTC
TATATATCTTCAATCGGCCCGAACTCGGGGGGCAGTGGTTCACTA
Right flanking sequence: Indices 362884 -- 363383
AACTCGAAATATGAACTATCTGCCCATATGGATGGGGGCGGCTGCGGCTTACTCCATCGGCTAGG
GGTGATTGATGAATAATTATCATGATCATATTACGTATGTGATATGTCAGCGCTCACTGCACCCA
GAGAAGGGTAGTGATGCGCGAACGAGAATCTAATCAGAAGATGGGAGAATCGGCCAGGCCATATA
TCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAA
TCTAATCTAATCTAATCTATATATGGGGTGGGGCCATTCCTCTCTATCTCTATATAGAGGGGGGG
CCAATGCCATGCCATGAAACCAAGATAGATGAGTAGAGGGGAGCCGACCGGACTCTCTTCTCTCA
TTCTAATAGTAAGTATGGACCGCATCACTATCCCATATAGTGATCCATACCAATTGATGGGGACT
AGTGTGTTTGGGGAGATACTGCTAGTGTCTGGCCGGGTCGCCATA
Found at i:363086 original size:5 final size:5
Alignment explanation
Indices: 363078--363162 Score: 170
Period size: 5 Copynumber: 17.0 Consensus size: 5
363068 CAGGCCATAT
363078 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA
1 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA
363128 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA
1 ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA ATCTA
363163 TATATGGGGT
Statistics
Matches: 80, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 80 1.00
ACGTcount: A:0.40, C:0.20, G:0.00, T:0.40
Consensus pattern (5 bp):
ATCTA
Left flanking sequence: Indices 362578 -- 363077
GGGCATCCGGCCGCATCGCATCGAGCCCCGGCTGTCCTTCTCCACAGCCCCCCTCTCTATGGGGC
TAGCCAATGAATGTTAACTAGCCAATGAATCAGCTCCTGCTTGAGCCATAGATATAGATGGGCCC
CGCTTATATAGATAGGGATAGATAGATGGGGCTGCGAGAGTCAATCCCACACAGCTTAATCTATA
TGATATGCATGCCGCCCCCTCTCTATATATCTTCAATCGGCCCGAACTCGGGGGGCAGTGGTTCA
CTACGCCCATATATATAGATAGGGCGCCCATATATATAGATAGGGCAACTCGAAATATGAACTAT
CTGCCCATATGGATGGGGGCGGCTGCGGCTTACTCCATCGGCTAGGGGTGATTGATGAATAATTA
TCATGATCATATTACGTATGTGATATGTCAGCGCTCACTGCACCCAGAGAAGGGTAGTGATGCGC
GAACGAGAATCTAATCAGAAGATGGGAGAATCGGCCAGGCCATAT
Right flanking sequence: Indices 363163 -- 363662
TATATGGGGTGGGGCCATTCCTCTCTATCTCTATATAGAGGGGGGGCCAATGCCATGCCATGAAA
CCAAGATAGATGAGTAGAGGGGAGCCGACCGGACTCTCTTCTCTCATTCTAATAGTAAGTATGGA
CCGCATCACTATCCCATATAGTGATCCATACCAATTGATGGGGACTAGTGTGTTTGGGGAGATAC
TGCTAGTGTCTGGCCGGGTCGCCATATCTGAATGAGACTATCTGAACTCTCTCTCAGATATAGAT
CTCTCTCTATATCTCACTCTTCAGTCTCTTCTCTCTCTATCTCTCTCAGATATATATCTCTCTCT
CTATCTCTCTCTATATCTCACTCTTCAGTCTCTTCTCTCTCTATCTCTCTCAGATATATATCTCT
CTCTAGATCTCTATCTTCACTCTGAGCCTTGTCCGGCCCCTATCCCCTCTCTATAGAACCCAGCC
GAGTCTTGACCGTCCGGCTTTAAACCCAGCCGAGCCAACTGTCCG
Found at i:363469 original size:12 final size:12
Alignment explanation
Indices: 363452--363538 Score: 57
Period size: 12 Copynumber: 6.5 Consensus size: 12
363442 TTCAGTCTCT
363452 TCTCTCTCTATC
1 TCTCTCTCTATC
*
363464 TCTCTCAGATATATATC
1 TCTCTC---TCTAT--C
363481 TCTCTCTCTATC
1 TCTCTCTCTATC
*
363493 TCTCTCTATATC
1 TCTCTCTCTATC
* *
363505 TCACTCTTCAGTCTC
1 TCTCTC-TC--TATC
363520 TTCTCTCTCTATC
1 -TCTCTCTCTATC
363533 TCTCTC
1 TCTCTC
363539 AGATATATAT
Statistics
Matches: 58, Mismatches: 8, Indels: 18
0.69 0.10 0.21
Matches are distributed among these distances:
12 29 0.50
13 4 0.07
14 4 0.07
15 9 0.16
16 5 0.09
17 7 0.12
ACGTcount: A:0.14, C:0.37, G:0.02, T:0.47
Consensus pattern (12 bp):
TCTCTCTCTATC
Left flanking sequence: Indices 362952 -- 363451
GATTGATGAATAATTATCATGATCATATTACGTATGTGATATGTCAGCGCTCACTGCACCCAGAG
AAGGGTAGTGATGCGCGAACGAGAATCTAATCAGAAGATGGGAGAATCGGCCAGGCCATATATCT
AATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCT
AATCTAATCTAATCTATATATGGGGTGGGGCCATTCCTCTCTATCTCTATATAGAGGGGGGGCCA
ATGCCATGCCATGAAACCAAGATAGATGAGTAGAGGGGAGCCGACCGGACTCTCTTCTCTCATTC
TAATAGTAAGTATGGACCGCATCACTATCCCATATAGTGATCCATACCAATTGATGGGGACTAGT
GTGTTTGGGGAGATACTGCTAGTGTCTGGCCGGGTCGCCATATCTGAATGAGACTATCTGAACTC
TCTCTCAGATATAGATCTCTCTCTATATCTCACTCTTCAGTCTCT
Right flanking sequence: Indices 363539 -- 364038
AGATATATATCTCTCTCTAGATCTCTATCTTCACTCTGAGCCTTGTCCGGCCCCTATCCCCTCTC
TATAGAACCCAGCCGAGTCTTGACCGTCCGGCTTTAAACCCAGCCGAGCCAACTGTCCGGCCCAC
TGGAATGGATTACATAACAAACATAACCCAGCCGAGACGGGACCCCCAATTGAGAATCGAGTGCC
CCACCCCCCCCACATATAGATCGGGATAGGGATAGGGGGCCCTCAACCTCCAGATATATAGATAG
GGCCGACGGCCTACTCTATATAGCATATAGCTCCAGGTGAATGTGAAGTTGCCATATACACTATA
CTTCCCAAGCCGGATGCTTGGCCATGTATAGACATAAGGCGATCAACGAGGAGAGCCTAGATCTT
GGACCTCTCGGCCGTCGGTACCTCCCTCTATCAGGAGAGCGGAGCGGAATGAATCATCCTTCGGA
ACCAGGCTTTCGCATACACCTAGCCGGCGGAATGAAGCCCTATCT
Found at i:363563 original size:69 final size:69
Alignment explanation
Indices: 363418--363564 Score: 276
Period size: 69 Copynumber: 2.1 Consensus size: 69
363408 CTCTCAGATA
363418 TAGATCTCTCTCTATATCTCACTCTTCAGTCTCTTCTCTCTCTATCTCTCTCAGATATATATCTC
1 TAGATCTCTCTCTATATCTCACTCTTCAGTCTCTTCTCTCTCTATCTCTCTCAGATATATATCTC
363483 TCTC
66 TCTC
**
363487 TCTATCTCTCTCTATATCTCACTCTTCAGTCTCTTCTCTCTCTATCTCTCTCAGATATATATCTC
1 TAGATCTCTCTCTATATCTCACTCTTCAGTCTCTTCTCTCTCTATCTCTCTCAGATATATATCTC
363552 TCTC
66 TCTC
363556 TAGATCTCT
1 TAGATCTCT
363565 ATCTTCACTC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
69 74 1.00
ACGTcount: A:0.17, C:0.33, G:0.04, T:0.46
Consensus pattern (69 bp):
TAGATCTCTCTCTATATCTCACTCTTCAGTCTCTTCTCTCTCTATCTCTCTCAGATATATATCTC
TCTC
Left flanking sequence: Indices 362918 -- 363417
GGGGCGGCTGCGGCTTACTCCATCGGCTAGGGGTGATTGATGAATAATTATCATGATCATATTAC
GTATGTGATATGTCAGCGCTCACTGCACCCAGAGAAGGGTAGTGATGCGCGAACGAGAATCTAAT
CAGAAGATGGGAGAATCGGCCAGGCCATATATCTAATCTAATCTAATCTAATCTAATCTAATCTA
ATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTAATCTATATATGGGGTGGGGC
CATTCCTCTCTATCTCTATATAGAGGGGGGGCCAATGCCATGCCATGAAACCAAGATAGATGAGT
AGAGGGGAGCCGACCGGACTCTCTTCTCTCATTCTAATAGTAAGTATGGACCGCATCACTATCCC
ATATAGTGATCCATACCAATTGATGGGGACTAGTGTGTTTGGGGAGATACTGCTAGTGTCTGGCC
GGGTCGCCATATCTGAATGAGACTATCTGAACTCTCTCTCAGATA
Right flanking sequence: Indices 363565 -- 364064
ATCTTCACTCTGAGCCTTGTCCGGCCCCTATCCCCTCTCTATAGAACCCAGCCGAGTCTTGACCG
TCCGGCTTTAAACCCAGCCGAGCCAACTGTCCGGCCCACTGGAATGGATTACATAACAAACATAA
CCCAGCCGAGACGGGACCCCCAATTGAGAATCGAGTGCCCCACCCCCCCCACATATAGATCGGGA
TAGGGATAGGGGGCCCTCAACCTCCAGATATATAGATAGGGCCGACGGCCTACTCTATATAGCAT
ATAGCTCCAGGTGAATGTGAAGTTGCCATATACACTATACTTCCCAAGCCGGATGCTTGGCCATG
TATAGACATAAGGCGATCAACGAGGAGAGCCTAGATCTTGGACCTCTCGGCCGTCGGTACCTCCC
TCTATCAGGAGAGCGGAGCGGAATGAATCATCCTTCGGAACCAGGCTTTCGCATACACCTAGCCG
GCGGAATGAAGCCCTATCTAGATATGGCCCCTATCTAGAATTCTA
Found at i:365314 original size:24 final size:24
Alignment explanation
Indices: 365270--365315 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
365260 GCCCCCCTCT
*
365270 ATATAGATATATGATATGGGGGCC
1 ATATAGATATATGATAGGGGGGCC
*
365294 ATATAGAATCTAT-ATAGGGGGG
1 ATATAG-ATATATGATAGGGGGG
365316 GGGCCGACCC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
24 14 0.74
25 5 0.26
ACGTcount: A:0.35, C:0.07, G:0.30, T:0.28
Consensus pattern (24 bp):
ATATAGATATATGATAGGGGGGCC
Left flanking sequence: Indices 364770 -- 365269
GGCGCCATCTACCGATCCCACCAACCCGATAGGGGTATGGCGCCATCTACCGGGAGAGGATATGC
CCGCCTCCCCGGGGCCCTCTAGATCTCACTCAGATTGGCAGCAGAGGCGCCAATCTGATCATTCT
ATTCTGGAGAGCCCTCTATATCCTAGACTAGAGGAAAGGCGCCAATCCTCTATCTAGCTTTTAGC
TCTGTAGAGGGGATCGGTGTGGCCGGTAAGCTCGGGTGGCAGATCTATATCTATATATAGGTATA
GGGGGCCCGCATCTAACTACCGGCCGGACACGCCCTCCATCGGGAGGCCCGGATAGCACCCAGCT
AGAGTAGAGTCGAGTACAGTAGAGTGCGGGATAGGGATATGGAGAGAGGGGCGGCCAAACTCTCT
ATAGAGAGGGGGGACACGGGCTGGGGGCGACTAGAATCTCCGGCCGGAAGCTTGAGAAATAGGAA
TAAGAAATCTCTTCTCTTCATCTTCGAGGGCCGCTGCCCCCCTCT
Right flanking sequence: Indices 365316 -- 365815
GGGCCGACCCAGATATAGATAGCCTCCCTCTCCCTCTATATACAACTACAACTATAGGGTGGGGT
ATCTAGAATAGCCACCCGCCCCCCGATCGAGAGGGCGGGTATCACGGCTCTATATATCACCTCAC
CTCTGATATAACCGAACACCGGGGAGCGGAGTGGAGTGCCGATGGTATCGAATGGTAGGGTAGCG
GTAACGGAAGGAACAGGTATTATCAAACGAAACGAAAGGCTAGGGTTTGGTTGGCTAGGCACTAG
CCAGGGCTAGTCGACCCAACCCGCTAGTCGATAGGTGAGGTGTGATGGCTAGTCGGCCCAACCTG
CCCCTACCCTATATATCTCCTCTCCCCTATATCTGGTTGGGGCAAGTCGAGCAAGAACTACCAGC
ATATAGATATAGATATAGATATAGATATAGATATAGATATAGATCTCCCCTATATCATAATTCCC
ACCTGGCCCCCCCCCTATATAGAGATGGGAGCCGAGAAATCTAGA
Found at i:365717 original size:6 final size:6
Alignment explanation
Indices: 365706--365749 Score: 88
Period size: 6 Copynumber: 7.3 Consensus size: 6
365696 AACTACCAGC
365706 ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG AT
1 ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG AT
365750 CTCCCCTATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.16, T:0.34
Consensus pattern (6 bp):
ATATAG
Left flanking sequence: Indices 365206 -- 365705
GAAGCTTGAGAAATAGGAATAAGAAATCTCTTCTCTTCATCTTCGAGGGCCGCTGCCCCCCTCTA
TATAGATATATGATATGGGGGCCATATAGAATCTATATAGGGGGGGGGCCGACCCAGATATAGAT
AGCCTCCCTCTCCCTCTATATACAACTACAACTATAGGGTGGGGTATCTAGAATAGCCACCCGCC
CCCCGATCGAGAGGGCGGGTATCACGGCTCTATATATCACCTCACCTCTGATATAACCGAACACC
GGGGAGCGGAGTGGAGTGCCGATGGTATCGAATGGTAGGGTAGCGGTAACGGAAGGAACAGGTAT
TATCAAACGAAACGAAAGGCTAGGGTTTGGTTGGCTAGGCACTAGCCAGGGCTAGTCGACCCAAC
CCGCTAGTCGATAGGTGAGGTGTGATGGCTAGTCGGCCCAACCTGCCCCTACCCTATATATCTCC
TCTCCCCTATATCTGGTTGGGGCAAGTCGAGCAAGAACTACCAGC
Right flanking sequence: Indices 365750 -- 366249
CTCCCCTATATCATAATTCCCACCTGGCCCCCCCCCTATATAGAGATGGGAGCCGAGAAATCTAG
AGAGGGGGGGGCCCCTATCCATATCTGTTGGGCATATAGATATAAGGGATATGGATAGGGCCATA
CCATATATAGACGGCTAGTCGCCGTATAGACAAGACATATATGAGGGTGAGGGATTGGGATGGGT
TTGATGGCGAGTCGAACAAACCCAACAGTCCATTCCCCGCCCTATATCTAGAGTATCTATAGTTT
CGACCAGCACATCAGCCCAGCACATCAGCACCAGCACATCAGCTAGTTCGAACCCCCCCCCCCCG
TCCATGCCGGATTAGAAACTTGAGTCTAGATAGGGAGACTACTATATAGTTAGAGAGGGCCTATC
TAGATATTCGATGGGGCTAGATATAGATAGATCCGCCCCAGATCCATATCTATAGAGGGGGAGGG
GCCCGCCGCCAGATCGGCCGCCGATCGAGTCTAGATAGGAGGGGA
Found at i:366045 original size:14 final size:14
Alignment explanation
Indices: 366012--366052 Score: 75
Period size: 13 Copynumber: 3.0 Consensus size: 14
366002 TATAGTTTCG
366012 ACCAGCACATCAGC
1 ACCAGCACATCAGC
366026 -CCAGCACATCAGC
1 ACCAGCACATCAGC
366039 ACCAGCACATCAGC
1 ACCAGCACATCAGC
366053 TAGTTCGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
13 13 0.50
14 13 0.50
ACGTcount: A:0.34, C:0.44, G:0.15, T:0.07
Consensus pattern (14 bp):
ACCAGCACATCAGC
Left flanking sequence: Indices 365512 -- 366011
TAACGGAAGGAACAGGTATTATCAAACGAAACGAAAGGCTAGGGTTTGGTTGGCTAGGCACTAGC
CAGGGCTAGTCGACCCAACCCGCTAGTCGATAGGTGAGGTGTGATGGCTAGTCGGCCCAACCTGC
CCCTACCCTATATATCTCCTCTCCCCTATATCTGGTTGGGGCAAGTCGAGCAAGAACTACCAGCA
TATAGATATAGATATAGATATAGATATAGATATAGATATAGATCTCCCCTATATCATAATTCCCA
CCTGGCCCCCCCCCTATATAGAGATGGGAGCCGAGAAATCTAGAGAGGGGGGGGCCCCTATCCAT
ATCTGTTGGGCATATAGATATAAGGGATATGGATAGGGCCATACCATATATAGACGGCTAGTCGC
CGTATAGACAAGACATATATGAGGGTGAGGGATTGGGATGGGTTTGATGGCGAGTCGAACAAACC
CAACAGTCCATTCCCCGCCCTATATCTAGAGTATCTATAGTTTCG
Right flanking sequence: Indices 366053 -- 366552
TAGTTCGAACCCCCCCCCCCCGTCCATGCCGGATTAGAAACTTGAGTCTAGATAGGGAGACTACT
ATATAGTTAGAGAGGGCCTATCTAGATATTCGATGGGGCTAGATATAGATAGATCCGCCCCAGAT
CCATATCTATAGAGGGGGAGGGGCCCGCCGCCAGATCGGCCGCCGATCGAGTCTAGATAGGAGGG
GATATATAGGCATATAGAACTATAACTATCCATAGCTGAGCAGTGCTGGGATATCTGGATGAACC
GGCCCGAACTCGAGATCTATACTCTATAGCCGGCTCCATATCCAGGGCGAACAGTGCCCATCTAA
TCTATATTCTATAGAATGAACCGCATCTTTCGATTGGTGGCCCCAGATATCTAGAGGGGTGCGCC
CGGGCCTCCTCCGGTGCCCTATCTATATCTGTTCGGTCAGGTATCTATCCGGGGCGGCCAGATCA
GGTATAGGGTGGGGCGGGCCAGGTCTCTTCTCAACCAACCTTGTA
Found at i:367196 original size:25 final size:25
Alignment explanation
Indices: 367154--367241 Score: 149
Period size: 25 Copynumber: 3.5 Consensus size: 25
367144 TAGAGTTCAG
* *
367154 ATAGAGATCTAGAGAGAGAGAGAGAT
1 ATAGAGTTC-AGATAGAGAGAGAGAT
367180 ATAGAGTTCAGATAGAGAGAGAGAT
1 ATAGAGTTCAGATAGAGAGAGAGAT
367205 ATAGAGTTCAGATAGAGAGAGAGAT
1 ATAGAGTTCAGATAGAGAGAGAGAT
367230 ATAGAGTTCAGA
1 ATAGAGTTCAGA
367242 GAGATCTCTA
Statistics
Matches: 60, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
25 52 0.87
26 8 0.13
ACGTcount: A:0.44, C:0.05, G:0.32, T:0.19
Consensus pattern (25 bp):
ATAGAGTTCAGATAGAGAGAGAGAT
Left flanking sequence: Indices 366654 -- 367153
CTATATGGGGCCCTGCCCTATATTCTCTATATTGTAGCCCCCTCCCATATCTCTAGATAGGGCCT
GGCCTATCGGTTGAAGATAGATCTGGGGAGGCCCCATAGAATGATCTATTCTATAATCTCCGACG
GCATTTATGTACTATACTCCGCAAGATAGAGGTCTATTCTCCGCAAGCCCTATCTGCGACGGTCT
CTTCTCCTCATAACCAACCAACTATTGGACCAACTAACCAACTATCGCTGTGGACCAACCAACTA
TTGCGTTGTGTGGACCCCCTATCTATCTAGATATCTCCCTTCTGTTTCTATAGGGCATATAGAAT
AGTCAGATAGAGCCCCTAGACCCTATATCTATGTGGCCCTATATCTATATGGGGGGGGGCGGGGG
AGGCCTAGGGGCGTGGGAGGCCCGCCAGGGGCGGGGGAGTCCCTCCCCCATATAGAGTAGGCCGC
CCTCTAGAGCGCCTATATAGATCTAGATCTAGATATAGAGTTCAG
Right flanking sequence: Indices 367242 -- 367741
GAGATCTCTATAGAGAGAGAGAGAGATATAGATATAGAGATAGATATAGAGAGAGAGAGATCTAT
ATAGAGATAGAGAGAGAGACTGAAGAGTGAAGAGTGAAGATAGTCTCATTCAGATATAGGGGGGG
GCGGGTGAGTGCCCATATATAGATATAGATAGGGGTATATAGATGGATAGGGCGCCGACCCCCCT
CCCCTTGAATCTATAGGGCTATAGGGATCTCTAGTTCTCTCGGGAGGCCGAGCCATAGAGAGTCT
AGATAGGGGTATATAGATGGATAGGGCGCCGACCACATTTCTTTATGCTCGGGAGGATCGCATAG
CTGGGGCAATATCTATCCCCCGCCGACCACATTTCTTTATGCTCGGGAGGCCGAGTGCTCCTATC
TATATAATACATGGGGGTCCTCGCGCCGACATCTATAGTTAGACTAGACTCGGGAGGCCGAGGAG
CCTACTCTATGCGCAGCCGCCATATGGATGGGTCATTTCTCAATT
Found at i:367264 original size:20 final size:20
Alignment explanation
Indices: 367239--367321 Score: 75
Period size: 20 Copynumber: 4.3 Consensus size: 20
367229 TATAGAGTTC
*
367239 AGAGAGATCTCTATAGAGAG
1 AGAGAGATCTATATAGAGAG
* *
367259 AGAGAGA--GATAT--AGAT
1 AGAGAGATCTATATAGAGAG
* **
367275 ATAGAGATAGATATAGAGAG
1 AGAGAGATCTATATAGAGAG
*
367295 AGAGAGATCTATATAGAGAT
1 AGAGAGATCTATATAGAGAG
367315 AGAGAGA
1 AGAGAGA
367322 GAGACTGAAG
Statistics
Matches: 50, Mismatches: 9, Indels: 8
0.75 0.13 0.12
Matches are distributed among these distances:
16 9 0.18
18 8 0.16
20 33 0.66
ACGTcount: A:0.47, C:0.04, G:0.30, T:0.19
Consensus pattern (20 bp):
AGAGAGATCTATATAGAGAG
Left flanking sequence: Indices 366739 -- 367238
ATCTGGGGAGGCCCCATAGAATGATCTATTCTATAATCTCCGACGGCATTTATGTACTATACTCC
GCAAGATAGAGGTCTATTCTCCGCAAGCCCTATCTGCGACGGTCTCTTCTCCTCATAACCAACCA
ACTATTGGACCAACTAACCAACTATCGCTGTGGACCAACCAACTATTGCGTTGTGTGGACCCCCT
ATCTATCTAGATATCTCCCTTCTGTTTCTATAGGGCATATAGAATAGTCAGATAGAGCCCCTAGA
CCCTATATCTATGTGGCCCTATATCTATATGGGGGGGGGCGGGGGAGGCCTAGGGGCGTGGGAGG
CCCGCCAGGGGCGGGGGAGTCCCTCCCCCATATAGAGTAGGCCGCCCTCTAGAGCGCCTATATAG
ATCTAGATCTAGATATAGAGTTCAGATAGAGATCTAGAGAGAGAGAGAGATATAGAGTTCAGATA
GAGAGAGAGATATAGAGTTCAGATAGAGAGAGAGATATAGAGTTC
Right flanking sequence: Indices 367322 -- 367821
GAGACTGAAGAGTGAAGAGTGAAGATAGTCTCATTCAGATATAGGGGGGGGCGGGTGAGTGCCCA
TATATAGATATAGATAGGGGTATATAGATGGATAGGGCGCCGACCCCCCTCCCCTTGAATCTATA
GGGCTATAGGGATCTCTAGTTCTCTCGGGAGGCCGAGCCATAGAGAGTCTAGATAGGGGTATATA
GATGGATAGGGCGCCGACCACATTTCTTTATGCTCGGGAGGATCGCATAGCTGGGGCAATATCTA
TCCCCCGCCGACCACATTTCTTTATGCTCGGGAGGCCGAGTGCTCCTATCTATATAATACATGGG
GGTCCTCGCGCCGACATCTATAGTTAGACTAGACTCGGGAGGCCGAGGAGCCTACTCTATGCGCA
GCCGCCATATGGATGGGTCATTTCTCAATTCCTTTTCTTCGAGGAGGCCGCTAGGCCCCTATATC
TATATATCTCCCGACGAGGGCCGGGTCTGTGTGGATGCGACCAAC
Found at i:367298 original size:32 final size:32
Alignment explanation
Indices: 367257--367317 Score: 95
Period size: 32 Copynumber: 1.9 Consensus size: 32
367247 CTCTATAGAG
*
367257 AGAGAGAGAGATATAGATATAGAGATAGATAT
1 AGAGAGAGAGAGATAGATATAGAGATAGATAT
**
367289 AGAGAGAGAGAGATCTATATAGAGATAGA
1 AGAGAGAGAGAGATAGATATAGAGATAGA
367318 GAGAGAGACT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.49, C:0.02, G:0.30, T:0.20
Consensus pattern (32 bp):
AGAGAGAGAGAGATAGATATAGAGATAGATAT
Left flanking sequence: Indices 366757 -- 367256
GAATGATCTATTCTATAATCTCCGACGGCATTTATGTACTATACTCCGCAAGATAGAGGTCTATT
CTCCGCAAGCCCTATCTGCGACGGTCTCTTCTCCTCATAACCAACCAACTATTGGACCAACTAAC
CAACTATCGCTGTGGACCAACCAACTATTGCGTTGTGTGGACCCCCTATCTATCTAGATATCTCC
CTTCTGTTTCTATAGGGCATATAGAATAGTCAGATAGAGCCCCTAGACCCTATATCTATGTGGCC
CTATATCTATATGGGGGGGGGCGGGGGAGGCCTAGGGGCGTGGGAGGCCCGCCAGGGGCGGGGGA
GTCCCTCCCCCATATAGAGTAGGCCGCCCTCTAGAGCGCCTATATAGATCTAGATCTAGATATAG
AGTTCAGATAGAGATCTAGAGAGAGAGAGAGATATAGAGTTCAGATAGAGAGAGAGATATAGAGT
TCAGATAGAGAGAGAGATATAGAGTTCAGAGAGATCTCTATAGAG
Right flanking sequence: Indices 367318 -- 367817
GAGAGAGACTGAAGAGTGAAGAGTGAAGATAGTCTCATTCAGATATAGGGGGGGGCGGGTGAGTG
CCCATATATAGATATAGATAGGGGTATATAGATGGATAGGGCGCCGACCCCCCTCCCCTTGAATC
TATAGGGCTATAGGGATCTCTAGTTCTCTCGGGAGGCCGAGCCATAGAGAGTCTAGATAGGGGTA
TATAGATGGATAGGGCGCCGACCACATTTCTTTATGCTCGGGAGGATCGCATAGCTGGGGCAATA
TCTATCCCCCGCCGACCACATTTCTTTATGCTCGGGAGGCCGAGTGCTCCTATCTATATAATACA
TGGGGGTCCTCGCGCCGACATCTATAGTTAGACTAGACTCGGGAGGCCGAGGAGCCTACTCTATG
CGCAGCCGCCATATGGATGGGTCATTTCTCAATTCCTTTTCTTCGAGGAGGCCGCTAGGCCCCTA
TATCTATATATCTCCCGACGAGGGCCGGGTCTGTGTGGATGCGAC
Found at i:367307 original size:18 final size:18
Alignment explanation
Indices: 367156--367323 Score: 87
Period size: 18 Copynumber: 9.3 Consensus size: 18
367146 GAGTTCAGAT
*
367156 AGAGATCTAGAGAGAGAG
1 AGAGATATAGAGAGAGAG
** *
367174 AGAGATATAGAGTTCAGAT
1 AGAGATATAGAG-AGAGAG
* *
367193 AGAG----AGAGAGATAT
1 AGAGATATAGAGAGAGAG
*
367207 AGAG-T-TCAGATAGAGAG
1 AGAGATAT-AGAGAGAGAG
367224 AGAGATATAGAGTTCAGAGAG
1 AGAGATATAGAG---AGAGAG
****
367245 ATCTCTATAGAGAGAGAG
1 AGAGATATAGAGAGAGAG
* *
367263 AGAGATATAGATATAGAG
1 AGAGATATAGAGAGAGAG
*
367281 ATAGATATAGAGAGAGAG
1 AGAGATATAGAGAGAGAG
* *
367299 AGATCTATATAGAGATAGAG
1 AGA--GATATAGAGAGAGAG
367319 AGAGA
1 AGAGA
367324 GACTGAAGAG
Statistics
Matches: 111, Mismatches: 28, Indels: 22
0.69 0.17 0.14
Matches are distributed among these distances:
14 7 0.06
15 4 0.04
17 11 0.10
18 51 0.46
19 8 0.07
20 16 0.14
21 14 0.13
ACGTcount: A:0.45, C:0.04, G:0.32, T:0.19
Consensus pattern (18 bp):
AGAGATATAGAGAGAGAG
Left flanking sequence: Indices 366656 -- 367155
ATATGGGGCCCTGCCCTATATTCTCTATATTGTAGCCCCCTCCCATATCTCTAGATAGGGCCTGG
CCTATCGGTTGAAGATAGATCTGGGGAGGCCCCATAGAATGATCTATTCTATAATCTCCGACGGC
ATTTATGTACTATACTCCGCAAGATAGAGGTCTATTCTCCGCAAGCCCTATCTGCGACGGTCTCT
TCTCCTCATAACCAACCAACTATTGGACCAACTAACCAACTATCGCTGTGGACCAACCAACTATT
GCGTTGTGTGGACCCCCTATCTATCTAGATATCTCCCTTCTGTTTCTATAGGGCATATAGAATAG
TCAGATAGAGCCCCTAGACCCTATATCTATGTGGCCCTATATCTATATGGGGGGGGGCGGGGGAG
GCCTAGGGGCGTGGGAGGCCCGCCAGGGGCGGGGGAGTCCCTCCCCCATATAGAGTAGGCCGCCC
TCTAGAGCGCCTATATAGATCTAGATCTAGATATAGAGTTCAGAT
Right flanking sequence: Indices 367324 -- 367823
GACTGAAGAGTGAAGAGTGAAGATAGTCTCATTCAGATATAGGGGGGGGCGGGTGAGTGCCCATA
TATAGATATAGATAGGGGTATATAGATGGATAGGGCGCCGACCCCCCTCCCCTTGAATCTATAGG
GCTATAGGGATCTCTAGTTCTCTCGGGAGGCCGAGCCATAGAGAGTCTAGATAGGGGTATATAGA
TGGATAGGGCGCCGACCACATTTCTTTATGCTCGGGAGGATCGCATAGCTGGGGCAATATCTATC
CCCCGCCGACCACATTTCTTTATGCTCGGGAGGCCGAGTGCTCCTATCTATATAATACATGGGGG
TCCTCGCGCCGACATCTATAGTTAGACTAGACTCGGGAGGCCGAGGAGCCTACTCTATGCGCAGC
CGCCATATGGATGGGTCATTTCTCAATTCCTTTTCTTCGAGGAGGCCGCTAGGCCCCTATATCTA
TATATCTCCCGACGAGGGCCGGGTCTGTGTGGATGCGACCAACGG
Found at i:367839 original size:4 final size:4
Alignment explanation
Indices: 367832--367857 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
367822 GGGAGGGAGC
367832 GATA GATA GATA GATA GATA GATA GA
1 GATA GATA GATA GATA GATA GATA GA
367858 ATATATGCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.50, C:0.00, G:0.27, T:0.23
Consensus pattern (4 bp):
GATA
Left flanking sequence: Indices 367332 -- 367831
AGTGAAGAGTGAAGATAGTCTCATTCAGATATAGGGGGGGGCGGGTGAGTGCCCATATATAGATA
TAGATAGGGGTATATAGATGGATAGGGCGCCGACCCCCCTCCCCTTGAATCTATAGGGCTATAGG
GATCTCTAGTTCTCTCGGGAGGCCGAGCCATAGAGAGTCTAGATAGGGGTATATAGATGGATAGG
GCGCCGACCACATTTCTTTATGCTCGGGAGGATCGCATAGCTGGGGCAATATCTATCCCCCGCCG
ACCACATTTCTTTATGCTCGGGAGGCCGAGTGCTCCTATCTATATAATACATGGGGGTCCTCGCG
CCGACATCTATAGTTAGACTAGACTCGGGAGGCCGAGGAGCCTACTCTATGCGCAGCCGCCATAT
GGATGGGTCATTTCTCAATTCCTTTTCTTCGAGGAGGCCGCTAGGCCCCTATATCTATATATCTC
CCGACGAGGGCCGGGTCTGTGTGGATGCGACCAACGGGAGGGAGC
Right flanking sequence: Indices 367858 -- 368357
ATATATGCTCGGCCCCCCCCCTCTCTATATAGATGGGATAGATTCTATAGTCGAGGGCGGCTATC
GGCTATATAGAGTTGGCACTCCGCTCTAGATAAGAAATCAACTATATGGGCGGGGGCGGCCTACT
ATATAGATAGATCTACATTTATGCGCTCGACCCCCCAGATCAGATCTCTTCTCGGGCCAGCCATC
TATCTATACAGTCGAGGAGGGAGAGGAACCAACAATCGAGGGAGGCTATATAGAGTCTAGTCGGT
AGTCGGCACTCGACTGACCCCATCCCCCATCAGAGGGAAAGGAAGTCGAGGGACACTATCACTAT
CTATATATAGCGCGGGACTATTGCTATGCTCGAGGCCGATCACTAGAACAAACAGCAAGGTGCCG
GGGCGCCGACCCCCTATACAAACATTACAAACATTGCAAACATTGTGTACAAACATTGTGTACAA
ACATTGTTTGACAGACAACGAACATTGTGTACAAGATATAGCTGC
Found at i:368302 original size:13 final size:13
Alignment explanation
Indices: 368284--368319 Score: 72
Period size: 13 Copynumber: 2.8 Consensus size: 13
368274 ACAAACATTG
368284 CAAACATTGTGTA
1 CAAACATTGTGTA
368297 CAAACATTGTGTA
1 CAAACATTGTGTA
368310 CAAACATTGT
1 CAAACATTGT
368320 TTGACAGACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (13 bp):
CAAACATTGTGTA
Left flanking sequence: Indices 367784 -- 368283
CTCCCGACGAGGGCCGGGTCTGTGTGGATGCGACCAACGGGAGGGAGCGATAGATAGATAGATAG
ATAGATAGAATATATGCTCGGCCCCCCCCCTCTCTATATAGATGGGATAGATTCTATAGTCGAGG
GCGGCTATCGGCTATATAGAGTTGGCACTCCGCTCTAGATAAGAAATCAACTATATGGGCGGGGG
CGGCCTACTATATAGATAGATCTACATTTATGCGCTCGACCCCCCAGATCAGATCTCTTCTCGGG
CCAGCCATCTATCTATACAGTCGAGGAGGGAGAGGAACCAACAATCGAGGGAGGCTATATAGAGT
CTAGTCGGTAGTCGGCACTCGACTGACCCCATCCCCCATCAGAGGGAAAGGAAGTCGAGGGACAC
TATCACTATCTATATATAGCGCGGGACTATTGCTATGCTCGAGGCCGATCACTAGAACAAACAGC
AAGGTGCCGGGGCGCCGACCCCCTATACAAACATTACAAACATTG
Right flanking sequence: Indices 368320 -- 368819
TTGACAGACAACGAACATTGTGTACAAGATATAGCTGCCTCCCCCTGCCGTGCAGGAATCGGTCG
GGGGAGTGCCGACAAACATTGTGTACAAGATATAGCTGCCTCCCCCTGCCGTGCAGGAATCGGTC
GGGGGAGTGCCGACAAACATTGTTTGACAAACATTGTTTGCAAACATTGTGTGCAAACATTGTGT
ACATTGGGCCGTTTGTACAAACATTGCAAACATTGAGGGCCCGTACACAAACGGGATCTCAATGT
TTGTACACAATGTTCGTTGTTTGTTTGTCAAACAATGTTTGCGTTTGTGTTTGTTTGCCCGAAAC
GGCAAACGGCTATAATTCATCGAGTGCGGCCCGGGCCCCCACCCCGAACTCTAGATAGATCTCAT
CTCGAGAGATATTCTCTTCTCTCCGGACGCCAGATAGAACTATAGGCTCTGGACTCCGCCCCCTT
CTATATAGAGGCAATCCGATCTCCCCAGCCGGCCGGGGCAACCTC
Found at i:368410 original size:66 final size:66
Alignment explanation
Indices: 368333--368472 Score: 280
Period size: 66 Copynumber: 2.1 Consensus size: 66
368323 ACAGACAACG
368333 AACATTGTGTACAAGATATAGCTGCCTCCCCCTGCCGTGCAGGAATCGGTCGGGGGAGTGCCGAC
1 AACATTGTGTACAAGATATAGCTGCCTCCCCCTGCCGTGCAGGAATCGGTCGGGGGAGTGCCGAC
368398 A
66 A
368399 AACATTGTGTACAAGATATAGCTGCCTCCCCCTGCCGTGCAGGAATCGGTCGGGGGAGTGCCGAC
1 AACATTGTGTACAAGATATAGCTGCCTCCCCCTGCCGTGCAGGAATCGGTCGGGGGAGTGCCGAC
368464 A
66 A
368465 AACATTGT
1 AACATTGT
368473 TTGACAAACA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 74 1.00
ACGTcount: A:0.24, C:0.26, G:0.29, T:0.21
Consensus pattern (66 bp):
AACATTGTGTACAAGATATAGCTGCCTCCCCCTGCCGTGCAGGAATCGGTCGGGGGAGTGCCGAC
A
Left flanking sequence: Indices 367833 -- 368332
ATAGATAGATAGATAGATAGATAGAATATATGCTCGGCCCCCCCCCTCTCTATATAGATGGGATA
GATTCTATAGTCGAGGGCGGCTATCGGCTATATAGAGTTGGCACTCCGCTCTAGATAAGAAATCA
ACTATATGGGCGGGGGCGGCCTACTATATAGATAGATCTACATTTATGCGCTCGACCCCCCAGAT
CAGATCTCTTCTCGGGCCAGCCATCTATCTATACAGTCGAGGAGGGAGAGGAACCAACAATCGAG
GGAGGCTATATAGAGTCTAGTCGGTAGTCGGCACTCGACTGACCCCATCCCCCATCAGAGGGAAA
GGAAGTCGAGGGACACTATCACTATCTATATATAGCGCGGGACTATTGCTATGCTCGAGGCCGAT
CACTAGAACAAACAGCAAGGTGCCGGGGCGCCGACCCCCTATACAAACATTACAAACATTGCAAA
CATTGTGTACAAACATTGTGTACAAACATTGTTTGACAGACAACG
Right flanking sequence: Indices 368473 -- 368972
TTGACAAACATTGTTTGCAAACATTGTGTGCAAACATTGTGTACATTGGGCCGTTTGTACAAACA
TTGCAAACATTGAGGGCCCGTACACAAACGGGATCTCAATGTTTGTACACAATGTTCGTTGTTTG
TTTGTCAAACAATGTTTGCGTTTGTGTTTGTTTGCCCGAAACGGCAAACGGCTATAATTCATCGA
GTGCGGCCCGGGCCCCCACCCCGAACTCTAGATAGATCTCATCTCGAGAGATATTCTCTTCTCTC
CGGACGCCAGATAGAACTATAGGCTCTGGACTCCGCCCCCTTCTATATAGAGGCAATCCGATCTC
CCCAGCCGGCCGGGGCAACCTCTCTTTTCGCATCAGCGGATAGGGTTCCATCCGCTGCTCCCTCA
CCGAGGGATCCCGAAGGGGGATCCCCCTCGCCATATAGAACTCTAGGGCCCTAGAGTTCTATCTG
GCAATCGAGTCCCCCCCCTATCCCTATCTATAGTTCGGGGCTGGG
Found at i:368495 original size:13 final size:13
Alignment explanation
Indices: 368463--368512 Score: 82
Period size: 13 Copynumber: 3.8 Consensus size: 13
368453 GGAGTGCCGA
368463 CAAACATTGTTTG
1 CAAACATTGTTTG
368476 ACAAACATTGTTTG
1 -CAAACATTGTTTG
*
368490 CAAACATTGTGTG
1 CAAACATTGTTTG
368503 CAAACATTGT
1 CAAACATTGT
368513 GTACATTGGG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
13 22 0.63
14 13 0.37
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (13 bp):
CAAACATTGTTTG
Left flanking sequence: Indices 367963 -- 368462
ACTATATGGGCGGGGGCGGCCTACTATATAGATAGATCTACATTTATGCGCTCGACCCCCCAGAT
CAGATCTCTTCTCGGGCCAGCCATCTATCTATACAGTCGAGGAGGGAGAGGAACCAACAATCGAG
GGAGGCTATATAGAGTCTAGTCGGTAGTCGGCACTCGACTGACCCCATCCCCCATCAGAGGGAAA
GGAAGTCGAGGGACACTATCACTATCTATATATAGCGCGGGACTATTGCTATGCTCGAGGCCGAT
CACTAGAACAAACAGCAAGGTGCCGGGGCGCCGACCCCCTATACAAACATTACAAACATTGCAAA
CATTGTGTACAAACATTGTGTACAAACATTGTTTGACAGACAACGAACATTGTGTACAAGATATA
GCTGCCTCCCCCTGCCGTGCAGGAATCGGTCGGGGGAGTGCCGACAAACATTGTGTACAAGATAT
AGCTGCCTCCCCCTGCCGTGCAGGAATCGGTCGGGGGAGTGCCGA
Right flanking sequence: Indices 368513 -- 369012
GTACATTGGGCCGTTTGTACAAACATTGCAAACATTGAGGGCCCGTACACAAACGGGATCTCAAT
GTTTGTACACAATGTTCGTTGTTTGTTTGTCAAACAATGTTTGCGTTTGTGTTTGTTTGCCCGAA
ACGGCAAACGGCTATAATTCATCGAGTGCGGCCCGGGCCCCCACCCCGAACTCTAGATAGATCTC
ATCTCGAGAGATATTCTCTTCTCTCCGGACGCCAGATAGAACTATAGGCTCTGGACTCCGCCCCC
TTCTATATAGAGGCAATCCGATCTCCCCAGCCGGCCGGGGCAACCTCTCTTTTCGCATCAGCGGA
TAGGGTTCCATCCGCTGCTCCCTCACCGAGGGATCCCGAAGGGGGATCCCCCTCGCCATATAGAA
CTCTAGGGCCCTAGAGTTCTATCTGGCAATCGAGTCCCCCCCCTATCCCTATCTATAGTTCGGGG
CTGGGACCCCACCCAATATATAGATTAGATATCCTCCTCGGCCTC
Found at i:369111 original size:5 final size:5
Alignment explanation
Indices: 369101--369165 Score: 130
Period size: 5 Copynumber: 13.0 Consensus size: 5
369091 GGCATATATA
369101 TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG
1 TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG TATGG
369151 TATGG TATGG TATGG
1 TATGG TATGG TATGG
369166 GGCGCCCATC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 60 1.00
ACGTcount: A:0.20, C:0.00, G:0.40, T:0.40
Consensus pattern (5 bp):
TATGG
Left flanking sequence: Indices 368601 -- 369100
TGTTTGTCAAACAATGTTTGCGTTTGTGTTTGTTTGCCCGAAACGGCAAACGGCTATAATTCATC
GAGTGCGGCCCGGGCCCCCACCCCGAACTCTAGATAGATCTCATCTCGAGAGATATTCTCTTCTC
TCCGGACGCCAGATAGAACTATAGGCTCTGGACTCCGCCCCCTTCTATATAGAGGCAATCCGATC
TCCCCAGCCGGCCGGGGCAACCTCTCTTTTCGCATCAGCGGATAGGGTTCCATCCGCTGCTCCCT
CACCGAGGGATCCCGAAGGGGGATCCCCCTCGCCATATAGAACTCTAGGGCCCTAGAGTTCTATC
TGGCAATCGAGTCCCCCCCCTATCCCTATCTATAGTTCGGGGCTGGGACCCCACCCAATATATAG
ATTAGATATCCTCCTCGGCCTCCTCTCCCAGATGAGAGTTGCCCCAACCCCATCTATAGAGATCT
GGGCGCCGGGGCCAACTAAACTCCATATAGTCGAGGGCATATATA
Right flanking sequence: Indices 369166 -- 369665
GGCGCCCATCTGTATATGGCGGTAGTCCCTATATAGACAGATGGGTTTGTTTCCCGAGCCAGATA
TATGGATGGGGCACCACTGAGGACTAGCGCCTGGTAGACCGGACTAGACTCTAAATAGATCTGTA
GGCGGCTCTACTTAGGAGTAGGCGGCGGTCGCCCCCATATAGAATATAGATAGGGCCGGAGTACG
GAATTCGAGGGCCCTCGACCGCCCCTCCCCCTATCTATATAGGCATAGGCGCCCTATATCTCTAT
ATGGCGAGGGAGACTCTCTAGAGTCCCCTATCTAGACTCTATATTGGGGTCCCCCTAGTTCAGAT
TAGATAGGGCTGACCCAGATATAGATAGGGGGCCGGATGCAGAGGAGCTATGGAGAGTCGGATTT
ATGCGCCCCTCCCCGGCAGTCCCCAACCCCAACCTAGATGGATGGATACGTGATATCAGTCATCA
GTCGTATCACGTACAATAGAAGATAGATGTGGTACTCAATAGATA
Found at i:372156 original size:25 final size:25
Alignment explanation
Indices: 372100--372191 Score: 147
Period size: 25 Copynumber: 3.8 Consensus size: 25
372090 ATATCTCTCT
372100 TCTCTCTCTATCT-ATA-TCTATA--
1 TCTCTCTCTATCTGA-ACTCTATATC
372122 TCTCTCTCTATCTGAACTCTATATC
1 TCTCTCTCTATCTGAACTCTATATC
372147 TCTCTCTCTATCTGAACTCTATATC
1 TCTCTCTCTATCTGAACTCTATATC
372172 TCTCTCTCTATCTGAACTCT
1 TCTCTCTCTATCTGAACTCT
372192 GAATGAGAGG
Statistics
Matches: 66, Mismatches: 0, Indels: 5
0.93 0.00 0.07
Matches are distributed among these distances:
22 14 0.21
23 7 0.11
25 45 0.68
ACGTcount: A:0.20, C:0.32, G:0.03, T:0.46
Consensus pattern (25 bp):
TCTCTCTCTATCTGAACTCTATATC
Left flanking sequence: Indices 371600 -- 372099
CCCTAGATCGGGATCGGGACTTTCATCGACCATAGGGATATGGGAGTCTTCTTTACTCGTGTTCT
CTCCGCTCGATTCTCCGCTCGAAGAAGGTGGGACTTGTGATGTGATCCACGCCCGATTCACAAGT
GATATCTACACTGTGTCACTCGGCCTTCCCGCTTCCGTGCAACATCCATCTCCATCTTTAGATAC
GTATACGCTGTTCGGGTGCTCGCGGCAAGCCAAGCGCCAAGCAAGATATATATATATATATATAT
ATAGACAGGGCCAGGGCCACGCTCTTTTTGCCTCCTTCTGCCGCCACATCTATATCACATGCCTT
ATCTCCATTGCCATCGGGGAGGGCAGGTACGATTCTCATCGGCTCTTATATCCAGTACTCTCGCT
TCCCCCAACCCCTGATGCTTCGCTCTTATGGAGATATATCTGAACTCTCTCTCTCTATCTCTCGA
TCTCTCTATATCTCTCTCTATCTCTCGATCTATCTATATCTCTCT
Right flanking sequence: Indices 372192 -- 372691
GAATGAGAGGGGGGCTACCTGTATTGGATATGGTAATAGTACCTGTATCAATACGCGACCCGGAC
CTCCATGATCTATACCTTCGGGGACTGGCCCCCTATCTACCCTATATTGGATATTCGGGTCTTTT
CGGCTCTATTGAATACTGGGCCTCCGCCTCCACCGGTAGGGGAAGAGATATATCTCCCGGTACAG
ATAGATCACTTTCACTTTCTTCCGATTACTTCGGGTGATGGCGCGGGGTGATGGCCCCATTATCC
AGACCAGAACTTCCGCTTCCGCCACCCGGGCCCACCGAGCCAATCGAACGGGAAACCCTATATAC
AGATAGGCAGGGGGGCTGCAGCCCCTAGGCCTAGATATAGAGGGTCCGGTCCCCCCCGCACCTCG
CCACCCGTGAGTCACACTGTTCGACATGTGCTCGATACTCGGGATTAGATCTGGAGAACTATTAA
TATTAACTGGGACTGGGAGATGCTGGCTCTCCCTGCAGCAACGCG
Found at i:372892 original size:14 final size:14
Alignment explanation
Indices: 372873--372899 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
372863 CTCGCATTGT
372873 CCAGTGTCTAGTGC
1 CCAGTGTCTAGTGC
372887 CCAGTGTCTAGTG
1 CCAGTGTCTAGTG
372900 TCCGGCTAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.26, G:0.30, T:0.30
Consensus pattern (14 bp):
CCAGTGTCTAGTGC
Left flanking sequence: Indices 372373 -- 372872
ATCTCCCGGTACAGATAGATCACTTTCACTTTCTTCCGATTACTTCGGGTGATGGCGCGGGGTGA
TGGCCCCATTATCCAGACCAGAACTTCCGCTTCCGCCACCCGGGCCCACCGAGCCAATCGAACGG
GAAACCCTATATACAGATAGGCAGGGGGGCTGCAGCCCCTAGGCCTAGATATAGAGGGTCCGGTC
CCCCCCGCACCTCGCCACCCGTGAGTCACACTGTTCGACATGTGCTCGATACTCGGGATTAGATC
TGGAGAACTATTAATATTAACTGGGACTGGGAGATGCTGGCTCTCCCTGCAGCAACGCGCCCTAC
CGAATCTATGCTCGCATGGATGAGTTGCAGCACAAGCAGCAAACCATGAACGGCTATATAGAGAG
AGGGAGCCTTACCGAATCTATGCGCCTGCCTCACTCCTCGGAATCGGCCGTCTTCCGCGCCCCCT
TTTCATTTCATTTTCATTACTTATGGGCGCCTATTCTCGCATTGT
Right flanking sequence: Indices 372900 -- 373399
TCCGGCTAGACAACAATTCTCTGGATATAGGGCCCATATAGAGATAGGGGGGGGGCTGGGATCCG
GCATTAATGTCCATTGCCCATTGTCCAGTGCCGAGAACCCGAGAACGAGAACTAATATATGGGTA
TGGGTATGGGGCCCATTGTCTATTGCCCATTGCCCCTTGTCCACTGCCCGACGAGAGAATCTATC
CACCGATCTGGGATCTGGGATATGGCATCTGGCGCTAATCCCACCAGCCTATCCGATCCTATCGC
CCCTCTCTCTATATGGCGTGGCGAGGGGAGAGTAGTCTTTTCCCTTGTCCTTGTCCGGCTCCCCA
TCGGGCCCAATCCAATCTATCCGGCTCAAATGCATGCAGCCGGGTAATGCCTATATCTATACGGT
CTCGAGTCCCGGGCGGTCAGGTCTGGTCAGGTTAGAAACTATAGGCCCCCCTAGATATATGGGTG
GTCGGGTAACTGTCCACTGTCCGGCGCCTATATCTATCTGGGCCT
Found at i:374601 original size:20 final size:20
Alignment explanation
Indices: 374576--374626 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
374566 GAGGGCCCAA
*
374576 ATATAGATAGAGAGATAGAG
1 ATATAGATAGAGAGAGAGAG
* *
374596 ATATAGAGAGAGAGAGAGAT
1 ATATAGATAGAGAGAGAGAG
*
374616 AGATAGATAGA
1 ATATAGATAGA
374627 TAGGGGCCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.51, C:0.00, G:0.31, T:0.18
Consensus pattern (20 bp):
ATATAGATAGAGAGAGAGAG
Left flanking sequence: Indices 374076 -- 374575
AATCAGAATCTGGTCCGGTCTGGGGGAAACCTATCCCTATCCGGTCAGTACTCTACAATTCCTAT
ATAGAGTAGGGCAATCTCTCTCTATTCTGGGACCTGACCCTCTCTCGCCCATATATATATATATA
TATAGAGTCTATATATATCTAGGGGGGGGGTGTCTTATACTATATAGCCGCCCCCTCCCTAGCGG
TAGCGGCCCCCCCCTATATAGATTCTATATGGCTAGATGGGAGCCCCATAGAGAGGGCTCGGCCT
CCCGAGCCATATCTATGGGGCCCCTTAGAGAGTTGGCCCCCCAACTCAACTCACTTTAGAGTGGA
GTAGAGGCGGCCCCCTCCCCCCTCTCTATATATCTTATCTATCTGGGCACCTGGGGCGCAGAAAT
GATATAACCTTGACCCGGGGGCCTATCTAATCTCTAGTAGCCCCAGTTCTATATAGATCCTCCCC
CCCTCCATGGAATATAGGGGAGAATTCTCTATATGGAGGGCCCAA
Right flanking sequence: Indices 374627 -- 375126
TAGGGGCCTTATGATACAGTTCCGATACTCCGGAGGTGCAGGTGCACAAGAGCCTACTGCTCCAA
CCCCAACCCATACTCCGGAGGAGGACAATGACCCTATATATCTATCTATAGTAAGAATTGAGCCG
CTAGTCCTCAGGTCCACATGGCCCCGGTAATCCGTTTCTAGTTTGGTTTGTAGTTGGGCCGGTGC
ACACCGCCAGGGGAATCTTCCTTTACCGAAAGGCGCCCCGGCAGTCTTCTATATATATAGATAGG
TGGTTTATAGAGTTGGGCTGGGCCTAACATATCATATAGTTAGATAGGGGGTTCGGGTCGAAGGT
TCATTGCCGAGGTCGAGGCGCTCAGTGACTCTCTGTTACTCGCCCGAACGCCTTTATGCTCTAGG
TCCGGGGGGCCATTGCAGTGACTCTTCGGACTGCCTCGCCAACTATAGATCCATTGCAGTTACTC
CTCTGATCTTGATCTGCCCTATATAGAGATATGGGGGATCTTGCG
Found at i:374619 original size:4 final size:4
Alignment explanation
Indices: 374578--374629 Score: 50
Period size: 4 Copynumber: 13.0 Consensus size: 4
374568 GGGCCCAAAT
* * * * * *
374578 ATAG ATAG AGAG ATAG AGAT ATAG AGAG AGAG AGAG ATAG ATAG ATAG
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATAG
374626 ATAG
1 ATAG
374630 GGGCCTTATG
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 40 1.00
ACGTcount: A:0.50, C:0.00, G:0.33, T:0.17
Consensus pattern (4 bp):
ATAG
Left flanking sequence: Indices 374078 -- 374577
TCAGAATCTGGTCCGGTCTGGGGGAAACCTATCCCTATCCGGTCAGTACTCTACAATTCCTATAT
AGAGTAGGGCAATCTCTCTCTATTCTGGGACCTGACCCTCTCTCGCCCATATATATATATATATA
TAGAGTCTATATATATCTAGGGGGGGGGTGTCTTATACTATATAGCCGCCCCCTCCCTAGCGGTA
GCGGCCCCCCCCTATATAGATTCTATATGGCTAGATGGGAGCCCCATAGAGAGGGCTCGGCCTCC
CGAGCCATATCTATGGGGCCCCTTAGAGAGTTGGCCCCCCAACTCAACTCACTTTAGAGTGGAGT
AGAGGCGGCCCCCTCCCCCCTCTCTATATATCTTATCTATCTGGGCACCTGGGGCGCAGAAATGA
TATAACCTTGACCCGGGGGCCTATCTAATCTCTAGTAGCCCCAGTTCTATATAGATCCTCCCCCC
CTCCATGGAATATAGGGGAGAATTCTCTATATGGAGGGCCCAAAT
Right flanking sequence: Indices 374630 -- 375129
GGGCCTTATGATACAGTTCCGATACTCCGGAGGTGCAGGTGCACAAGAGCCTACTGCTCCAACCC
CAACCCATACTCCGGAGGAGGACAATGACCCTATATATCTATCTATAGTAAGAATTGAGCCGCTA
GTCCTCAGGTCCACATGGCCCCGGTAATCCGTTTCTAGTTTGGTTTGTAGTTGGGCCGGTGCACA
CCGCCAGGGGAATCTTCCTTTACCGAAAGGCGCCCCGGCAGTCTTCTATATATATAGATAGGTGG
TTTATAGAGTTGGGCTGGGCCTAACATATCATATAGTTAGATAGGGGGTTCGGGTCGAAGGTTCA
TTGCCGAGGTCGAGGCGCTCAGTGACTCTCTGTTACTCGCCCGAACGCCTTTATGCTCTAGGTCC
GGGGGGCCATTGCAGTGACTCTTCGGACTGCCTCGCCAACTATAGATCCATTGCAGTTACTCCTC
TGATCTTGATCTGCCCTATATAGAGATATGGGGGATCTTGCGATT
Found at i:374629 original size:8 final size:8
Alignment explanation
Indices: 374580--374626 Score: 67
Period size: 8 Copynumber: 5.9 Consensus size: 8
374570 GCCCAAATAT
374580 AGATAGAG
1 AGATAGAG
374588 AGATAGAG
1 AGATAGAG
*
374596 ATATAGAG
1 AGATAGAG
*
374604 AGAGAGAG
1 AGATAGAG
*
374612 AGATAGAT
1 AGATAGAG
374620 AGATAGA
1 AGATAGA
374627 TAGGGGCCTT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 34 1.00
ACGTcount: A:0.51, C:0.00, G:0.34, T:0.15
Consensus pattern (8 bp):
AGATAGAG
Left flanking sequence: Indices 374080 -- 374579
AGAATCTGGTCCGGTCTGGGGGAAACCTATCCCTATCCGGTCAGTACTCTACAATTCCTATATAG
AGTAGGGCAATCTCTCTCTATTCTGGGACCTGACCCTCTCTCGCCCATATATATATATATATATA
GAGTCTATATATATCTAGGGGGGGGGTGTCTTATACTATATAGCCGCCCCCTCCCTAGCGGTAGC
GGCCCCCCCCTATATAGATTCTATATGGCTAGATGGGAGCCCCATAGAGAGGGCTCGGCCTCCCG
AGCCATATCTATGGGGCCCCTTAGAGAGTTGGCCCCCCAACTCAACTCACTTTAGAGTGGAGTAG
AGGCGGCCCCCTCCCCCCTCTCTATATATCTTATCTATCTGGGCACCTGGGGCGCAGAAATGATA
TAACCTTGACCCGGGGGCCTATCTAATCTCTAGTAGCCCCAGTTCTATATAGATCCTCCCCCCCT
CCATGGAATATAGGGGAGAATTCTCTATATGGAGGGCCCAAATAT
Right flanking sequence: Indices 374627 -- 375126
TAGGGGCCTTATGATACAGTTCCGATACTCCGGAGGTGCAGGTGCACAAGAGCCTACTGCTCCAA
CCCCAACCCATACTCCGGAGGAGGACAATGACCCTATATATCTATCTATAGTAAGAATTGAGCCG
CTAGTCCTCAGGTCCACATGGCCCCGGTAATCCGTTTCTAGTTTGGTTTGTAGTTGGGCCGGTGC
ACACCGCCAGGGGAATCTTCCTTTACCGAAAGGCGCCCCGGCAGTCTTCTATATATATAGATAGG
TGGTTTATAGAGTTGGGCTGGGCCTAACATATCATATAGTTAGATAGGGGGTTCGGGTCGAAGGT
TCATTGCCGAGGTCGAGGCGCTCAGTGACTCTCTGTTACTCGCCCGAACGCCTTTATGCTCTAGG
TCCGGGGGGCCATTGCAGTGACTCTTCGGACTGCCTCGCCAACTATAGATCCATTGCAGTTACTC
CTCTGATCTTGATCTGCCCTATATAGAGATATGGGGGATCTTGCG
Found at i:376508 original size:28 final size:28
Alignment explanation
Indices: 376476--376532 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 28
376466 GAAGGGGATT
*
376476 GGTGAAGAGCGGGGATGGATTGAAAGAA
1 GGTGAAGAGCGGGGAAGGATTGAAAGAA
*
376504 GGTGAAGAGCGGGGAAGGATTGGAAGAA
1 GGTGAAGAGCGGGGAAGGATTGAAAGAA
376532 G
1 G
376533 CAGAATGGAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.35, C:0.04, G:0.49, T:0.12
Consensus pattern (28 bp):
GGTGAAGAGCGGGGAAGGATTGAAAGAA
Left flanking sequence: Indices 375976 -- 376475
CTTTGAAAGATTACCGGTCCCGCTGGATTGGATTCATTACCATTCATGCACCCCCCTCTCTTTGA
TTGAAAGATTACCGGGAGAGCCCTCTCTTTGAACCTTGTGGATGATAGAGTAACTGATCGAAATC
ACAGACAGAAACTTGGTGCCGTTTGATGAGTAACTAAGAACGAGGGAGGGGGATACGGGAAGAAT
GAAGTAATGGAGGAGGAAGTAATTGCTGGTGGTAACGACTTGTCACGATCCATTGGTTTATATAT
CATCCATGTTCTAGGTGTATCGGGATACATTATTTTCGCTAAGCGTATATAATGAAATTGGGTGG
AAGGGTCCACCCCGCGACGAAGGGTACTAACTGCCCCAAGACCAAGGGGGTGCTAACCAACTGCC
GAGTCCTCTCCGAACCGCAGGGGATAGTTGCCCATCATACGGCTCACCAACTTCACTTGCTCCGA
ATGGGTCGGCTCGGGGATCACCCCGCCAACAAATGGAAGGGGATT
Right flanking sequence: Indices 376533 -- 377032
CAGAATGGATTACGGCACGGAAGCGTCCGCAGTTGAAGCACTGAGAGATATAGAGAGAGAGCATG
TGTGTTAGCGAGATGAGATATATGTATATGGCAGTCATATGATCCGTTCCCCTCCATTCCACACG
AGCCTTCCTGCGGCGTGGTGGCGGGGACGGGGATTGGCTCGGGTCGAATTCGAATACATGCATAG
GCCCCTTCCCCTCCGAGTTGTTCAGAAGGTTTTCCCCTACTCGACCGTCGAGTGCACCCCCCCTC
CATAGAATAGAGGGGAGCCCCCCTCCTTGAACTATCTTTTCTATGGCCCTCAGATATAGTTGACT
GGGGCCCTAACGTCAGTCGAGTCCTCGGCCTCCCAAGCATAAATGCCCCTCCGATTAGAGAATTC
TAGATAGGGGCCCACCCCACTATATAGCCGAGCCGCCCCCATAGATCTATAGGCCTAACCCCCCT
GGGGGCGCCACCGGGGGGGTTAGGCCTATAGATCTATGGGGGCCT
Found at i:377334 original size:63 final size:66
Alignment explanation
Indices: 377261--377423 Score: 197
Period size: 73 Copynumber: 2.4 Consensus size: 66
377251 AGAGAATATA
* * * *
377261 GGGGCGGGGGAGGCCCCCTTATCTATATAGAGGGGAGAAT-CTAT-A-CGGCCATATCTCATATC
1 GGGGCGGGGGAGGCCCCCATATCTATATAGAGGAGAGAATAATATAAGAGGCCATATCTCATATC
377323 T
66 T
*
377324 GGGGCGGGGGAGGCCCCCGACTCTCTATATAGAGGAGAGAATAGATATAGAAGGTAGGCCATATC
1 GGGGCGGGGGAGGCCCCC-A-TATCTATATAGAGGAGAGAATA-ATAT--AA-G-AGGCCATATC
377389 TCATATCT
59 TCATATCT
377397 GGGGCGGGGGAGGCCCCCATATCTATA
1 GGGGCGGGGGAGGCCCCCATATCTATA
377424 GAGGGGCGGC
Statistics
Matches: 84, Mismatches: 6, Indels: 12
0.82 0.06 0.12
Matches are distributed among these distances:
63 18 0.21
65 19 0.23
67 3 0.04
70 1 0.01
71 7 0.08
72 1 0.01
73 35 0.42
ACGTcount: A:0.25, C:0.21, G:0.33, T:0.21
Consensus pattern (66 bp):
GGGGCGGGGGAGGCCCCCATATCTATATAGAGGAGAGAATAATATAAGAGGCCATATCTCATATC
T
Left flanking sequence: Indices 376761 -- 377260
CCCCTACTCGACCGTCGAGTGCACCCCCCCTCCATAGAATAGAGGGGAGCCCCCCTCCTTGAACT
ATCTTTTCTATGGCCCTCAGATATAGTTGACTGGGGCCCTAACGTCAGTCGAGTCCTCGGCCTCC
CAAGCATAAATGCCCCTCCGATTAGAGAATTCTAGATAGGGGCCCACCCCACTATATAGCCGAGC
CGCCCCCATAGATCTATAGGCCTAACCCCCCTGGGGGCGCCACCGGGGGGGTTAGGCCTATAGAT
CTATGGGGGCCTATCTATATGCCCATCCCATCTATATAGATAGGGGATCCTCCCGAGCATAACTA
TAGAGAGTCCCGTCGCCATATCTATATATAGGGTGCCTAGCCTAAAGTATATAATACCTATAGAA
ATGAATGAAGAATATTATGTTCTATTACTATAATACCGTTGCCCAGCTATAGTAGGGGAGGCCCG
CCGGGGCGGGGGAGGCCCTACGGCCCCCCCTAGATAGAGAATATA
Right flanking sequence: Indices 377424 -- 377923
GAGGGGCGGCCGAGCCGAGTGCCAGTTCTCTATATAGGGCCCCATATCTAGATAGGGGCCGGGGC
CCTCCATTCTATAGGGAGGGGCGGATCGGACGAGTGCCCCAGATAGATAAGATATCTAGGGGGGG
GCTCCTCGGCCGGCCAGGGGGCCGAGTGCCCCAGGGGCCCCAGAGAACTATATAGAGGTCGCCAT
ATATGGATATAAAGGGAGCATAAATAATAGCCAGGCCCTCGGTTGAGTGCCTGCCTAAAGGCCCT
CGTCCTCCTCGGCCCCCCCCTCTCTATGGATGGGTTAGAGGGGGGCCCCATATCTAGATAGGGGG
CCTAGGGGCGGCCATACCATATAGATCTATATAGGGGACCCTCCCCCTCCAGATAGCCCCTCCAG
AGAGCCCTTCCAGATAGCCCCTCCAGATAGCCCCTCCCGACCTCCCAGATAGATAGAGAGGGGCT
ATCTGGAGGGGCCCCCTATAGGCCTATATCTATATAGGGGCGGGG
Found at i:377810 original size:13 final size:13
Alignment explanation
Indices: 377792--377850 Score: 100
Period size: 13 Copynumber: 4.5 Consensus size: 13
377782 GGGGACCCTC
377792 CCCCTCCAGATAG
1 CCCCTCCAGATAG
*
377805 CCCCTCCAGAGAG
1 CCCCTCCAGATAG
*
377818 CCCTTCCAGATAG
1 CCCCTCCAGATAG
377831 CCCCTCCAGATAG
1 CCCCTCCAGATAG
377844 CCCCTCC
1 CCCCTCC
377851 CGACCTCCCA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
13 42 1.00
ACGTcount: A:0.20, C:0.49, G:0.15, T:0.15
Consensus pattern (13 bp):
CCCCTCCAGATAG
Left flanking sequence: Indices 377292 -- 377791
GGGGAGAATCTATACGGCCATATCTCATATCTGGGGCGGGGGAGGCCCCCGACTCTCTATATAGA
GGAGAGAATAGATATAGAAGGTAGGCCATATCTCATATCTGGGGCGGGGGAGGCCCCCATATCTA
TAGAGGGGCGGCCGAGCCGAGTGCCAGTTCTCTATATAGGGCCCCATATCTAGATAGGGGCCGGG
GCCCTCCATTCTATAGGGAGGGGCGGATCGGACGAGTGCCCCAGATAGATAAGATATCTAGGGGG
GGGCTCCTCGGCCGGCCAGGGGGCCGAGTGCCCCAGGGGCCCCAGAGAACTATATAGAGGTCGCC
ATATATGGATATAAAGGGAGCATAAATAATAGCCAGGCCCTCGGTTGAGTGCCTGCCTAAAGGCC
CTCGTCCTCCTCGGCCCCCCCCTCTCTATGGATGGGTTAGAGGGGGGCCCCATATCTAGATAGGG
GGCCTAGGGGCGGCCATACCATATAGATCTATATAGGGGACCCTC
Right flanking sequence: Indices 377851 -- 378350
CGACCTCCCAGATAGATAGAGAGGGGCTATCTGGAGGGGCCCCCTATAGGCCTATATCTATATAG
GGGCGGGGGAGTCCCCCATAGAGAGATAGGGGGTCGGGGCCCCCATAGTCTCATTCAGGCCCCCC
CCAGATCTATATAGATAGGGCCCCCATATAGAGAGAGGGGGGGATAGAGGGGGCCCGCCTATAGA
TATAGGGGCGGGAGAGGCCCCCTATATCTATATGGCTCGGCCTCCTCCCCCCACTCTATATAGAT
ATATCTATATATAGATATCTATATAGATATACCTCGAGCATAGCATATAGATAGTACCGTCGGCG
CCCTCCCCTCCCTCTATCTATATGGATATGGGCCCATCCCATATAGAATCTATATAGGGGGGTGG
GGGGGGGCCGCCTCTATCTATATAGCCGCCCACTATACTCTATATAGAATATAGCCGTCGGGACC
CGGGCACTCGAGAGATTCTTCCCTCGATCCATCGAGTGCCGGCTT
Found at i:378119 original size:14 final size:14
Alignment explanation
Indices: 378100--378141 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
378090 CTCCCCCCAC
378100 TCTATATAGATATA
1 TCTATATAGATATA
* *
378114 TCTATATATAGATA
1 TCTATATAGATATA
378128 TCTATATAGATATA
1 TCTATATAGATATA
378142 CCTCGAGCAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
14 24 1.00
ACGTcount: A:0.43, C:0.07, G:0.07, T:0.43
Consensus pattern (14 bp):
TCTATATAGATATA
Left flanking sequence: Indices 377600 -- 378099
ACTATATAGAGGTCGCCATATATGGATATAAAGGGAGCATAAATAATAGCCAGGCCCTCGGTTGA
GTGCCTGCCTAAAGGCCCTCGTCCTCCTCGGCCCCCCCCTCTCTATGGATGGGTTAGAGGGGGGC
CCCATATCTAGATAGGGGGCCTAGGGGCGGCCATACCATATAGATCTATATAGGGGACCCTCCCC
CTCCAGATAGCCCCTCCAGAGAGCCCTTCCAGATAGCCCCTCCAGATAGCCCCTCCCGACCTCCC
AGATAGATAGAGAGGGGCTATCTGGAGGGGCCCCCTATAGGCCTATATCTATATAGGGGCGGGGG
AGTCCCCCATAGAGAGATAGGGGGTCGGGGCCCCCATAGTCTCATTCAGGCCCCCCCCAGATCTA
TATAGATAGGGCCCCCATATAGAGAGAGGGGGGGATAGAGGGGGCCCGCCTATAGATATAGGGGC
GGGAGAGGCCCCCTATATCTATATGGCTCGGCCTCCTCCCCCCAC
Right flanking sequence: Indices 378142 -- 378641
CCTCGAGCATAGCATATAGATAGTACCGTCGGCGCCCTCCCCTCCCTCTATCTATATGGATATGG
GCCCATCCCATATAGAATCTATATAGGGGGGTGGGGGGGGGCCGCCTCTATCTATATAGCCGCCC
ACTATACTCTATATAGAATATAGCCGTCGGGACCCGGGCACTCGAGAGATTCTTCCCTCGATCCA
TCGAGTGCCGGCTTGCCCTATATCTGTTCGTCGGCCCCTATCTATATCTCTATATGGGGGCCCGG
GTCAAGATCGAGATGGCTATGCACTCGACTCCATATATCTAGAGGGGGTCAAGGGATAACCGCAC
TCGAGATATATGGAGTCGAGTGCCTCGACCAATCATATAGAGAGAGGGGGGCCATATCTAGGGGA
GGCCGAGGGCCCCCCTCTCTATAGATGCACTCAATTGAGAGATGAGGAGTGAGCGTAGCGAACCA
CTCGCCCGCCCCTCTATTCTCTCTGGAGGGTGAGGAGTGAGCGTA
Found at i:378135 original size:16 final size:16
Alignment explanation
Indices: 378102--378135 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
378092 CCCCCCACTC
*
378102 TATATAGATATATCTA
1 TATATAGATATATATA
*
378118 TATATAGATATCTATA
1 TATATAGATATATATA
378134 TA
1 TA
378136 GATATACCTC
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.06, G:0.06, T:0.44
Consensus pattern (16 bp):
TATATAGATATATATA
Left flanking sequence: Indices 377602 -- 378101
TATATAGAGGTCGCCATATATGGATATAAAGGGAGCATAAATAATAGCCAGGCCCTCGGTTGAGT
GCCTGCCTAAAGGCCCTCGTCCTCCTCGGCCCCCCCCTCTCTATGGATGGGTTAGAGGGGGGCCC
CATATCTAGATAGGGGGCCTAGGGGCGGCCATACCATATAGATCTATATAGGGGACCCTCCCCCT
CCAGATAGCCCCTCCAGAGAGCCCTTCCAGATAGCCCCTCCAGATAGCCCCTCCCGACCTCCCAG
ATAGATAGAGAGGGGCTATCTGGAGGGGCCCCCTATAGGCCTATATCTATATAGGGGCGGGGGAG
TCCCCCATAGAGAGATAGGGGGTCGGGGCCCCCATAGTCTCATTCAGGCCCCCCCCAGATCTATA
TAGATAGGGCCCCCATATAGAGAGAGGGGGGGATAGAGGGGGCCCGCCTATAGATATAGGGGCGG
GAGAGGCCCCCTATATCTATATGGCTCGGCCTCCTCCCCCCACTC
Right flanking sequence: Indices 378136 -- 378635
GATATACCTCGAGCATAGCATATAGATAGTACCGTCGGCGCCCTCCCCTCCCTCTATCTATATGG
ATATGGGCCCATCCCATATAGAATCTATATAGGGGGGTGGGGGGGGGCCGCCTCTATCTATATAG
CCGCCCACTATACTCTATATAGAATATAGCCGTCGGGACCCGGGCACTCGAGAGATTCTTCCCTC
GATCCATCGAGTGCCGGCTTGCCCTATATCTGTTCGTCGGCCCCTATCTATATCTCTATATGGGG
GCCCGGGTCAAGATCGAGATGGCTATGCACTCGACTCCATATATCTAGAGGGGGTCAAGGGATAA
CCGCACTCGAGATATATGGAGTCGAGTGCCTCGACCAATCATATAGAGAGAGGGGGGCCATATCT
AGGGGAGGCCGAGGGCCCCCCTCTCTATAGATGCACTCAATTGAGAGATGAGGAGTGAGCGTAGC
GAACCACTCGCCCGCCCCTCTATTCTCTCTGGAGGGTGAGGAGTG
Found at i:378690 original size:53 final size:53
Alignment explanation
Indices: 378574--378675 Score: 150
Period size: 53 Copynumber: 1.9 Consensus size: 53
378564 AATTGAGAGA
* * * *
378574 TGAGGAGTGAGCGTAGCGAACCACTCGCCCGCCCCTCTATTCTCTCTGGAGGG
1 TGAGGAGTGAGCGTAGCGAACCACTCGCCCGCCCCTCTATTATATCTCGACGG
*
378627 TGAGGAGTGAGCGTAGCGAACCACTCGCCCGCCCCTCTCTCTATATCTC
1 TGAGGAGTGAGCGTAGCGAACCACTCGCCCGCCCCTCTAT-TATATCTC
378676 TATCTGGAGG
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 39 0.89
54 5 0.11
ACGTcount: A:0.18, C:0.34, G:0.26, T:0.22
Consensus pattern (53 bp):
TGAGGAGTGAGCGTAGCGAACCACTCGCCCGCCCCTCTATTATATCTCGACGG
Left flanking sequence: Indices 378074 -- 378573
TATATGGCTCGGCCTCCTCCCCCCACTCTATATAGATATATCTATATATAGATATCTATATAGAT
ATACCTCGAGCATAGCATATAGATAGTACCGTCGGCGCCCTCCCCTCCCTCTATCTATATGGATA
TGGGCCCATCCCATATAGAATCTATATAGGGGGGTGGGGGGGGGCCGCCTCTATCTATATAGCCG
CCCACTATACTCTATATAGAATATAGCCGTCGGGACCCGGGCACTCGAGAGATTCTTCCCTCGAT
CCATCGAGTGCCGGCTTGCCCTATATCTGTTCGTCGGCCCCTATCTATATCTCTATATGGGGGCC
CGGGTCAAGATCGAGATGGCTATGCACTCGACTCCATATATCTAGAGGGGGTCAAGGGATAACCG
CACTCGAGATATATGGAGTCGAGTGCCTCGACCAATCATATAGAGAGAGGGGGGCCATATCTAGG
GGAGGCCGAGGGCCCCCCTCTCTATAGATGCACTCAATTGAGAGA
Right flanking sequence: Indices 378676 -- 379175
TATCTGGAGGGTGAGGACAGATATAGATAGAGGGGTACTCACCCGCCCCTATATCTGAACTATGG
AGGGTGAGGGGTGAGCGCATGAATGCCCTCGGAGCGAGGGGTGGGTTGGGCAGGTAGTACGGGCC
CTCTGACTTCCTATGTGCTGCGTGTGCGGCGCTCGCGAAGCGGATGAAGGCTGATAGTCTCGCGC
CTCTCTCTCGCCGGGGGGAAACCGAACAAACCAAATCCAGTTCCCCCCAATTCTAGAGAATTCTC
CTCCCCCGTCGGCTCAGTTACATATAGAGGGCCCCATATCATATAGAGATAGGCCTCCGGGTCGC
CATATATTAATCTGAACTAGGAGGGCCATATAGATAGATATAGGGGCCCCCTATAGAACTCTAGG
GCTCCTTTCCTCTTTCTTCTCTTCCGGAGCAGCCGCCGCGGCGAGGCCGCTTGGCTGGATCTCGC
TGGTGCCACCTATAGGAAGGGCATTGGCGGATGTGTGACGCTCGG
Found at i:382915 original size:29 final size:29
Alignment explanation
Indices: 382878--382980 Score: 104
Period size: 29 Copynumber: 3.7 Consensus size: 29
382868 CAGAGAACTA
* *
382878 TAGAGAGGGGTCGCCCTATGGGAGATATC
1 TAGATAGGGTTCGCCCTATGGGAGATATC
* **
382907 TAGATAGGGCTCGCCCTAT-CTAGATAT-
1 TAGATAGGGTTCGCCCTATGGGAGATATC
** * *
382934 GGGTTA-GGTTTGCCCTATGGGAGATATC
1 TAGATAGGGTTCGCCCTATGGGAGATATC
382962 TAGATAGGGTTCGCCCTAT
1 TAGATAGGGTTCGCCCTAT
382981 CTAGATATGG
Statistics
Matches: 56, Mismatches: 15, Indels: 6
0.73 0.19 0.08
Matches are distributed among these distances:
26 10 0.18
27 9 0.16
28 9 0.16
29 28 0.50
ACGTcount: A:0.22, C:0.18, G:0.31, T:0.28
Consensus pattern (29 bp):
TAGATAGGGTTCGCCCTATGGGAGATATC
Left flanking sequence: Indices 382378 -- 382877
TAGTGATAGGAGAGTAAGGGGTAGCCCCAGAGCCGTCAAGAAACTGTAGTCAAGGATCGGGAGAA
AGAAACGGATCGGGAGGAGTCAAAGAAACTACAGTAGTCAAGAAAAGCTCCAGTGGGTAGCCACT
CCCTTCTCATAGAACCGTACGTGATACTTCCGCATCATACGGCTCCGTCCCGAGATGCGCGTCGT
CGGCCATCCCACTCTCCATGCATGTACTCCCCGTCTTCACTCCGTCTCTTGCTCCGGCCTTCGTG
GTTGCATCATCCATCTACCACCAGGCCTTCATGATCATCCATCTACCATCATCCATCACAGTTGA
GGGGCCATCTATCCTTTCCATCTACCACCATCATCCACCATCCATCACATCATCCATCTATTCTA
TTATATACGTGATACGACTGAGATCAGTCAACATAACATATCAACATGGAGATAGAGAACCCTAG
ATATCTGTATATAGATGGGTTTGGTTAGGTTAGCCCAGAGAACTA
Right flanking sequence: Indices 382981 -- 383480
CTAGATATGGGAAAGGTCAGCGAGGGCCGAAGGCCATAGTCTAGTCCTCTAGTGATGCAGGACCC
CCACCCTCTCTATCTGGTAGTGAACGGTACACTGCATTGGCGGCCCCATATATCTATCTCTCTAT
CTATCTATCTATCTATCTATCTATATTCTATGGTCTCCATAGAGAGCATACAGACGGAAGGATGC
TCTGCCAGAGACTATCCCATACGAAACGAATGATCTATAGTTCATGAGCATGACTATCTCCCGAC
CACCCCTATATATCTATCTGGAGGGCCCGCCATCACTATCCACATCTATATCTATAGGGGGTGGA
GGTTGAGGTCAGGTTAGACCCTAGACCAGATAGGTTGAGCCATATAGATATAGGGGTTAGCGCTG
GGCGGTTAGAAACTGGTTCATACAGATAGGACAGAGAGGCGCCGGGTTCATACAGATAAGATAGG
GGGTTGCCCCGGCCGCCGGTTAGCGCTGGGCGGTTATCGACTCGC
Found at i:382987 original size:28 final size:28
Alignment explanation
Indices: 382900--382988 Score: 92
Period size: 28 Copynumber: 3.2 Consensus size: 28
382890 GCCCTATGGG
*
382900 AGATATCTAGATAGGGCTCGCCCTATCT
1 AGATATCTAGATAGGGTTCGCCCTATCT
** * * **
382928 AGATAT-GGGTTA-GGTTTGCCCTATGGG
1 AGATATCTAGATAGGGTTCGCCCTAT-CT
382955 AGATATCTAGATAGGGTTCGCCCTATCT
1 AGATATCTAGATAGGGTTCGCCCTATCT
382983 AGATAT
1 AGATAT
382989 GGGAAAGGTC
Statistics
Matches: 45, Mismatches: 13, Indels: 6
0.70 0.20 0.09
Matches are distributed among these distances:
26 10 0.22
27 9 0.20
28 15 0.33
29 11 0.24
ACGTcount: A:0.25, C:0.18, G:0.26, T:0.31
Consensus pattern (28 bp):
AGATATCTAGATAGGGTTCGCCCTATCT
Left flanking sequence: Indices 382400 -- 382899
AGCCCCAGAGCCGTCAAGAAACTGTAGTCAAGGATCGGGAGAAAGAAACGGATCGGGAGGAGTCA
AAGAAACTACAGTAGTCAAGAAAAGCTCCAGTGGGTAGCCACTCCCTTCTCATAGAACCGTACGT
GATACTTCCGCATCATACGGCTCCGTCCCGAGATGCGCGTCGTCGGCCATCCCACTCTCCATGCA
TGTACTCCCCGTCTTCACTCCGTCTCTTGCTCCGGCCTTCGTGGTTGCATCATCCATCTACCACC
AGGCCTTCATGATCATCCATCTACCATCATCCATCACAGTTGAGGGGCCATCTATCCTTTCCATC
TACCACCATCATCCACCATCCATCACATCATCCATCTATTCTATTATATACGTGATACGACTGAG
ATCAGTCAACATAACATATCAACATGGAGATAGAGAACCCTAGATATCTGTATATAGATGGGTTT
GGTTAGGTTAGCCCAGAGAACTATAGAGAGGGGTCGCCCTATGGG
Right flanking sequence: Indices 382989 -- 383488
GGGAAAGGTCAGCGAGGGCCGAAGGCCATAGTCTAGTCCTCTAGTGATGCAGGACCCCCACCCTC
TCTATCTGGTAGTGAACGGTACACTGCATTGGCGGCCCCATATATCTATCTCTCTATCTATCTAT
CTATCTATCTATCTATATTCTATGGTCTCCATAGAGAGCATACAGACGGAAGGATGCTCTGCCAG
AGACTATCCCATACGAAACGAATGATCTATAGTTCATGAGCATGACTATCTCCCGACCACCCCTA
TATATCTATCTGGAGGGCCCGCCATCACTATCCACATCTATATCTATAGGGGGTGGAGGTTGAGG
TCAGGTTAGACCCTAGACCAGATAGGTTGAGCCATATAGATATAGGGGTTAGCGCTGGGCGGTTA
GAAACTGGTTCATACAGATAGGACAGAGAGGCGCCGGGTTCATACAGATAAGATAGGGGGTTGCC
CCGGCCGCCGGTTAGCGCTGGGCGGTTATCGACTCGCCGGGTTAG
Found at i:383113 original size:4 final size:4
Alignment explanation
Indices: 383096--383134 Score: 69
Period size: 4 Copynumber: 9.8 Consensus size: 4
383086 CGGCCCCATA
*
383096 TATC TATC TCTC TATC TATC TATC TATC TATC TATC TAT
1 TATC TATC TATC TATC TATC TATC TATC TATC TATC TAT
383135 ATTCTATGGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
4 33 1.00
ACGTcount: A:0.23, C:0.26, G:0.00, T:0.51
Consensus pattern (4 bp):
TATC
Left flanking sequence: Indices 382596 -- 383095
GTACTCCCCGTCTTCACTCCGTCTCTTGCTCCGGCCTTCGTGGTTGCATCATCCATCTACCACCA
GGCCTTCATGATCATCCATCTACCATCATCCATCACAGTTGAGGGGCCATCTATCCTTTCCATCT
ACCACCATCATCCACCATCCATCACATCATCCATCTATTCTATTATATACGTGATACGACTGAGA
TCAGTCAACATAACATATCAACATGGAGATAGAGAACCCTAGATATCTGTATATAGATGGGTTTG
GTTAGGTTAGCCCAGAGAACTATAGAGAGGGGTCGCCCTATGGGAGATATCTAGATAGGGCTCGC
CCTATCTAGATATGGGTTAGGTTTGCCCTATGGGAGATATCTAGATAGGGTTCGCCCTATCTAGA
TATGGGAAAGGTCAGCGAGGGCCGAAGGCCATAGTCTAGTCCTCTAGTGATGCAGGACCCCCACC
CTCTCTATCTGGTAGTGAACGGTACACTGCATTGGCGGCCCCATA
Right flanking sequence: Indices 383135 -- 383634
ATTCTATGGTCTCCATAGAGAGCATACAGACGGAAGGATGCTCTGCCAGAGACTATCCCATACGA
AACGAATGATCTATAGTTCATGAGCATGACTATCTCCCGACCACCCCTATATATCTATCTGGAGG
GCCCGCCATCACTATCCACATCTATATCTATAGGGGGTGGAGGTTGAGGTCAGGTTAGACCCTAG
ACCAGATAGGTTGAGCCATATAGATATAGGGGTTAGCGCTGGGCGGTTAGAAACTGGTTCATACA
GATAGGACAGAGAGGCGCCGGGTTCATACAGATAAGATAGGGGGTTGCCCCGGCCGCCGGTTAGC
GCTGGGCGGTTATCGACTCGCCGGGTTAGATAGATAGGACGGATAGGCGCCGGGTTAGATAGATA
GGGGGTTCAATTGAACCCAGGTTTGCGCCGGGGCGCTGGGTTCCTCGGCTCGGTTTCTATGGATA
TAGCGAATAGCGAGGAACGGACGGGGTTCTAGACTAGATAGGGGA
Found at i:384211 original size:30 final size:30
Alignment explanation
Indices: 384105--384204 Score: 182
Period size: 30 Copynumber: 3.3 Consensus size: 30
384095 CCTATATATA
* *
384105 GATATGGGACTACCGACTACCAAGATATGG
1 GATATGGCACGACCGACTACCAAGATATGG
384135 GATATGGCACGACCGACTACCAAGATATGG
1 GATATGGCACGACCGACTACCAAGATATGG
384165 GATATGGCACGACCGACTACCAAGATATGG
1 GATATGGCACGACCGACTACCAAGATATGG
384195 GATATGGCAC
1 GATATGGCAC
384205 TCCCGACCAC
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 68 1.00
ACGTcount: A:0.33, C:0.22, G:0.27, T:0.18
Consensus pattern (30 bp):
GATATGGCACGACCGACTACCAAGATATGG
Left flanking sequence: Indices 383605 -- 384104
AACGGACGGGGTTCTAGACTAGATAGGGGAAGCGAGCAGGAGGAGGAGAGGGGAGGGCCACTGAT
TTCTGTTGTCCCACTCCAACCCTATATCATCTAGCTCCATACAGGATAGAGGTACGATAGATAGC
CGGCCCCCAGGGATGGGTCGCCATAGATCTATATAGGGGGTTGACTCATGACCCGGAGTCGGTCG
GGTACAAAGAAATCTATATCTATATAGATATATATATGGCGGTTGGGCCCTGCCTGCCCTATATA
TCTTTCTTATCATGAATGACCCGTCACTCTATATAGAACTCTGAAGAGATTCCCCTCGCCATATA
TATCTAATCCCCCATCTATATCTAGAGAAGCCACCCGAGCCCTATATAGAGATATGGCCAATGCT
AGAGAAGCATACAAGCCGATCTGGGTGAACCGGCGAGTACAAGCATGAACGGCCGACCCCACCCC
TATATATTCTATAGATATGGGACTACCGACCGACCCCTATATATA
Right flanking sequence: Indices 384205 -- 384704
TCCCGACCACAATACTACCGACCGACCCCTCTCTATAGATATGGGACTACTGACCGACGACAAGA
GATATAGATATAGGGGCCCCTCTCTATAGATATGGGACTACCGACCCCTCTCTATAGATATGGCT
ATCCTTACCGACCGACCACAATCAGATATAGATATAGGGGCGACCGACTACCATCCTTCTATATA
CATCGCCCTATCTATATATATAGATTGATCGTACTAGATATAGATACAGACTGATAGGTGGGCCA
TATCTCTATCTAGGGGATAGGTGGGTTCACAGACCCCTATAGATCTATCTGGGGTGGGTACGCTC
ATTGACTCGATAGGTGGGTTCGCTCCCCCTCTCTCTATATGGAGGTGGGTTCAACCAACATATAT
ATAGGGTGGGTGGGTGGTAGGTGGGTTCGCTCATCTTGGGTTCGCTCATCCGCCCAGATCTGATC
TGATCTCTATAGATGGGGATGGGGTGGGCCATATCTATATACAGA
Found at i:384634 original size:15 final size:15
Alignment explanation
Indices: 384616--384644 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
384606 GGGTGGTAGG
384616 TGGGTTCGCTCATCT
1 TGGGTTCGCTCATCT
384631 TGGGTTCGCTCATC
1 TGGGTTCGCTCATC
384645 CGCCCAGATC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.28, G:0.28, T:0.38
Consensus pattern (15 bp):
TGGGTTCGCTCATCT
Left flanking sequence: Indices 384116 -- 384615
ACCGACTACCAAGATATGGGATATGGCACGACCGACTACCAAGATATGGGATATGGCACGACCGA
CTACCAAGATATGGGATATGGCACTCCCGACCACAATACTACCGACCGACCCCTCTCTATAGATA
TGGGACTACTGACCGACGACAAGAGATATAGATATAGGGGCCCCTCTCTATAGATATGGGACTAC
CGACCCCTCTCTATAGATATGGCTATCCTTACCGACCGACCACAATCAGATATAGATATAGGGGC
GACCGACTACCATCCTTCTATATACATCGCCCTATCTATATATATAGATTGATCGTACTAGATAT
AGATACAGACTGATAGGTGGGCCATATCTCTATCTAGGGGATAGGTGGGTTCACAGACCCCTATA
GATCTATCTGGGGTGGGTACGCTCATTGACTCGATAGGTGGGTTCGCTCCCCCTCTCTCTATATG
GAGGTGGGTTCAACCAACATATATATAGGGTGGGTGGGTGGTAGG
Right flanking sequence: Indices 384645 -- 385144
CGCCCAGATCTGATCTGATCTCTATAGATGGGGATGGGGTGGGCCATATCTATATACAGAAACTA
TGGCCTGATTCCCAGATGGTATATATAGTACGGGAGAGTCCCTCTCCCCCAGCTATAGTCTCTGT
CTCTATATAGAGATCGTAGGCCGCCCTATCTATATATGGGCACACGGACGGTATCTCCCCATGGC
CCCATAGATCTATAGGGCCTTTGGAAGCCCAGATTAATGGGGCATCCATCCGAATGATTCCGATC
CGATACAGTAGGCATTGAAGTCCATCCATCAGGCATCCATCGCATCGAAGTCATATAATATAGTT
CAATTCCTCGCCCCCATCCCCATATATAGATAGGGATAGGGGCCTATCAGTCCATATAGAGAGAG
GGGGGGAGGGGGTGCCCCATCCCATATATCTTTCGACTGGCCAAACCGAACTAGCCTTCAAACGC
CAGGCTAAGGCTAGTCCCTCTATCTAGACGGGGGTAGCCTAACCC
Found at i:385446 original size:6 final size:6
Alignment explanation
Indices: 385435--385467 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
385425 ACTGTGACTC
*
385435 CTCAAT CTCAAT CCCAAT CTCAAT CTCAAT CTC
1 CTCAAT CTCAAT CTCAAT CTCAAT CTCAAT CTC
385468 GCCTATATAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.30, C:0.39, G:0.00, T:0.30
Consensus pattern (6 bp):
CTCAAT
Left flanking sequence: Indices 384935 -- 385434
AGGCATCCATCGCATCGAAGTCATATAATATAGTTCAATTCCTCGCCCCCATCCCCATATATAGA
TAGGGATAGGGGCCTATCAGTCCATATAGAGAGAGGGGGGGAGGGGGTGCCCCATCCCATATATC
TTTCGACTGGCCAAACCGAACTAGCCTTCAAACGCCAGGCTAAGGCTAGTCCCTCTATCTAGACG
GGGGTAGCCTAACCCCAACCAGTCTTCCCCAACCCGAGGATGGAGGATGGCCCTATCTAGATATG
GTATGGCGGCCCCAACCTATTTATTAATCTAATCTGGAAGGAGGAAGGAGTGCCCCACATAGATT
AGGGGCCTCTCTATCTATCTATGGCGGCCCCAACCCTCTATATATCTATCTGGGGCGGAGGGGAT
TAGATTCTATTCCATCTCCCATCTCTATATAGGGCAGGGCGGGCGTAGGGGACCGACGGCCCTCT
ATATATATGGGCCCCCTCCCCTCCCTATATATCCAACTGTGACTC
Right flanking sequence: Indices 385468 -- 385967
GCCTATATAGAGGGGGGGGGCGGGGGAGGGGCGCCGACATCTATATCCATCTCGGGAGCCATATA
GAGTATAGATTAGATAGGGGTATATAGTATTCGCTACGAGATATATAGATGGGGCGCCGACTGCC
CTTTCAATTTCTAGGGGATGCCCGGGAGGCCGAGCCATATAGAGTCAGTCGGCCCCGACTGGAAG
CCTATCTATATATGGGGAGGCCGAGGGCCGCTAGATATAGATAGGCAGGCATTTATGCCCCTCCC
CTCTATATGCATGCGGCATGCGCCGACATCTAGATATCGTTATCTCGGGAGGCCGAGGGCCCCTA
TCTCTATATGGTAGATAGGCCCTCGTGCCGCTGGGCCGAGCCCTATCTATATATGGGGGTCTCGA
CCAACAATCGACAGTCGAGTCGATGCGTTCCACCCATCTCGGCTTCTCTCTAATCTAACCGCTTA
TCACCAGTCACCAGTCGATGCGTTCCACCCCCCCCCATAGATATA
Found at i:385985 original size:6 final size:6
Alignment explanation
Indices: 385974--386010 Score: 74
Period size: 6 Copynumber: 6.2 Consensus size: 6
385964 TATATAGGCG
385974 CACTCA CACTCA CACTCA CACTCA CACTCA CACTCA C
1 CACTCA CACTCA CACTCA CACTCA CACTCA CACTCA C
386011 TATATATGAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 31 1.00
ACGTcount: A:0.32, C:0.51, G:0.00, T:0.16
Consensus pattern (6 bp):
CACTCA
Left flanking sequence: Indices 385474 -- 385973
ATAGAGGGGGGGGGCGGGGGAGGGGCGCCGACATCTATATCCATCTCGGGAGCCATATAGAGTAT
AGATTAGATAGGGGTATATAGTATTCGCTACGAGATATATAGATGGGGCGCCGACTGCCCTTTCA
ATTTCTAGGGGATGCCCGGGAGGCCGAGCCATATAGAGTCAGTCGGCCCCGACTGGAAGCCTATC
TATATATGGGGAGGCCGAGGGCCGCTAGATATAGATAGGCAGGCATTTATGCCCCTCCCCTCTAT
ATGCATGCGGCATGCGCCGACATCTAGATATCGTTATCTCGGGAGGCCGAGGGCCCCTATCTCTA
TATGGTAGATAGGCCCTCGTGCCGCTGGGCCGAGCCCTATCTATATATGGGGGTCTCGACCAACA
ATCGACAGTCGAGTCGATGCGTTCCACCCATCTCGGCTTCTCTCTAATCTAACCGCTTATCACCA
GTCACCAGTCGATGCGTTCCACCCCCCCCCATAGATATATAGGCG
Right flanking sequence: Indices 386011 -- 386510
TATATATGATCGATCGATCGACCAGGAATCGATCATCAATCAGTAGAGCACATTCGAGAGCGGAA
GGGGCCTCCCTATAGATAGATATGGCCGAGCCCCTATCCATTTTCTATGGGGCCCCCTATATAGA
AATGTATGTTAATTGAAATGGGCGGGGATTGGATCGGGCCCCATATAGAGTGAAGATAGGGGCCC
CACTATACTGTATATATCTCTCCCGAGCATAGCATATAGATATCGAGTCTAGATAGGGGCCCTCG
ATTGATACGCTCACCCCTACCCGGCAGGCAGATCTCTCGAGAGATATAGAGAGGGGGCCTCCCCC
TCCAGATAAGATCTCTCTAGGGTAGGGGGGAGTGCCGAGATGCCCCATATAGAGAGAAGGGGGTC
GCCATATCTGTCTATATAGGGGAGCAGAAATGCCCTGGCCAACCCCCTATCTAATCCCTCATCAT
GGTGACCCCCAGTTAGATATAGATATATAGGGCGTGCCCTATCTC
Found at i:387263 original size:5 final size:5
Alignment explanation
Indices: 387253--387300 Score: 96
Period size: 5 Copynumber: 9.6 Consensus size: 5
387243 TAGATATATA
387253 GGGTT GGGTT GGGTT GGGTT GGGTT GGGTT GGGTT GGGTT GGGTT GGG
1 GGGTT GGGTT GGGTT GGGTT GGGTT GGGTT GGGTT GGGTT GGGTT GGG
387301 CCCTCTATAT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 43 1.00
ACGTcount: A:0.00, C:0.00, G:0.62, T:0.38
Consensus pattern (5 bp):
GGGTT
Left flanking sequence: Indices 386753 -- 387252
GAGTCTATATGGATAAGATATAGCCGGACAGCTATCCACTATAGAGGAGAGGTGGGGGTGGGGAG
GCCCTATAGATCTTATCTCTGGTCTCCATCTCCACCTATAGAGAGAGGGCCAAAAAACTCTATCC
GGGAGGCCGACGAAGCTATATACAGTAGGGTCGGGTCGGGGTCGGCACCCCACTCTATATATCTC
GTAGCGAATACTATCTATATGGATATGGGGGGCGACGGGACTCTCTATAGTTATGCTCGCTGAGC
CATATAGAGTCTGGATAGGGCCCCCTAGTTCAGAGGCCGTCGGTCGAGTTGTTCTCGATCTCGAC
CTCCTCCCCCGTTGCCCCCCCTCTGTTTAGATAGGGATAGTTCAGGGTACCGCCTCTAGAGTTGG
GGTCCTCTCCCTTCCCTATCGGGACCCGTTGGTCGAGGGTTGTATTGGATAGTCAGTCAACCCTC
CATATAGAGAATTCTTCGCTTGAGCGTAGCCCAGATAGATATATA
Right flanking sequence: Indices 387301 -- 387800
CCCTCTATATCTATATGGCTCGCCCGGGGGCCCCTCCCCTCTATATCTATCAGACGAAGATATAT
AGATAGGGGCGTCTTCTATATAGATAGGGGGGTTCCACAGTATAGTTTTTTTGGCGATCGGGTGC
CAGTTCTATATAGGGCGTATGGTCGAGCCGGGCATGACTATAGCTATAGATTAGATAGTCCCGTC
GACACCCTCTATCTATATGGGATGGGCATAAATATTATTAAGCTCTTTACTACATATAGATGTTC
TATAGCTGGTTATATATATAGGGCGCCCTATAGATCTATCTGGGAGGAGGGGGCAGATATAGAGA
GAGGGGACTATCTACTATCCATCTATATATAGCCGATAGCGGCGTTCCCCCCCATATATTGATCC
GGAGCAGAAATATCTGGGGGTTGTCCCCCCTATCTATATAGATAGGGCGGACTAGCCTTCAAACC
AAACCTGAGGACCCCTATCTATATAGATCTATATGGGGGTTGGGC
Found at i:388132 original size:24 final size:24
Alignment explanation
Indices: 388100--388145 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
388090 ATATAGATTC
* *
388100 TATATAGATCTATATCTATATAGA
1 TATATAGATATAGATCTATATAGA
388124 TATATAGATATAGATCTATATA
1 TATATAGATATAGATCTATATA
388146 TCTATATATA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (24 bp):
TATATAGATATAGATCTATATAGA
Left flanking sequence: Indices 387600 -- 388099
CTGGGAGGAGGGGGCAGATATAGAGAGAGGGGACTATCTACTATCCATCTATATATAGCCGATAG
CGGCGTTCCCCCCCATATATTGATCCGGAGCAGAAATATCTGGGGGTTGTCCCCCCTATCTATAT
AGATAGGGCGGACTAGCCTTCAAACCAAACCTGAGGACCCCTATCTATATAGATCTATATGGGGG
TTGGGCTACCAAACGACTGGCTAGTTGGGTCGGCCCATACATTATATTATGCCGAGGGGGCGGTG
GATAAGTGGGCGTTTCGAGAGAGATATATAGATAGGGCCCCCCATAATACATAATACATGTGATT
GATATATGTCTCCCGAGATATATAGATAGGGCGCCCCATATAGATAGATATCTAGGCTCGATAGA
GTTCTATATAGGGGGGCCCCTATAACTATATAGCTCTGAGATATATAGAGAGTTTCGGCGCTGTC
GCCATATCTATGACCTAATCTATATAGGGCCAGTAATATAGATTC
Right flanking sequence: Indices 388146 -- 388645
TCTATATATATCGCCCTATCTCTATATCTGCCCTCTATATCTCTATATACGGGCCCGGCCGGTAT
ATAGATATCTCGTATATAGATATCTCTACGACTATAGATAGTCGCCCTCCTCCCCAGATATATAG
AGAGGGCGGGGGCCGGCCTATCTATCTGGGGGGGGGCATACCATATAGATAAGATATCCGAGCTG
TGCCGATCGCAGCGCAGATCCATCGCGTGATGAATTCTATACGTCATCTACATGATCGAATGGAT
TCTATACGTAACATGAGCATGATGTTTGTTCGCCCGGCCCTCTATTCTATCTGGGAAAGATGGAT
GCCCCTATCTATATCTATAATAATGGATTACGGAATGATGGATTATTATACCATGGGACTATGCT
ATGGTGGAGAATCCATATCCAGTATAGAATAGAGAACCAACCGAGGGCTCCTCAGTGTCCATATA
GATATATATCCGGCATCAGTTAGAGTTCGGAATCCGGTATCCGCC
Found at i:388151 original size:16 final size:16
Alignment explanation
Indices: 388100--388151 Score: 63
Period size: 16 Copynumber: 3.4 Consensus size: 16
388090 ATATAGATTC
*
388100 TATATAGATCTATATC
1 TATATAGATCTATATA
388116 TATATAGA--TATATA
1 TATATAGATCTATATA
*
388130 GATATAGATCTATATA
1 TATATAGATCTATATA
*
388146 TCTATA
1 TATATA
388152 TATATCGCCC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
14 12 0.40
16 18 0.60
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (16 bp):
TATATAGATCTATATA
Left flanking sequence: Indices 387600 -- 388099
CTGGGAGGAGGGGGCAGATATAGAGAGAGGGGACTATCTACTATCCATCTATATATAGCCGATAG
CGGCGTTCCCCCCCATATATTGATCCGGAGCAGAAATATCTGGGGGTTGTCCCCCCTATCTATAT
AGATAGGGCGGACTAGCCTTCAAACCAAACCTGAGGACCCCTATCTATATAGATCTATATGGGGG
TTGGGCTACCAAACGACTGGCTAGTTGGGTCGGCCCATACATTATATTATGCCGAGGGGGCGGTG
GATAAGTGGGCGTTTCGAGAGAGATATATAGATAGGGCCCCCCATAATACATAATACATGTGATT
GATATATGTCTCCCGAGATATATAGATAGGGCGCCCCATATAGATAGATATCTAGGCTCGATAGA
GTTCTATATAGGGGGGCCCCTATAACTATATAGCTCTGAGATATATAGAGAGTTTCGGCGCTGTC
GCCATATCTATGACCTAATCTATATAGGGCCAGTAATATAGATTC
Right flanking sequence: Indices 388152 -- 388651
TATATCGCCCTATCTCTATATCTGCCCTCTATATCTCTATATACGGGCCCGGCCGGTATATAGAT
ATCTCGTATATAGATATCTCTACGACTATAGATAGTCGCCCTCCTCCCCAGATATATAGAGAGGG
CGGGGGCCGGCCTATCTATCTGGGGGGGGGCATACCATATAGATAAGATATCCGAGCTGTGCCGA
TCGCAGCGCAGATCCATCGCGTGATGAATTCTATACGTCATCTACATGATCGAATGGATTCTATA
CGTAACATGAGCATGATGTTTGTTCGCCCGGCCCTCTATTCTATCTGGGAAAGATGGATGCCCCT
ATCTATATCTATAATAATGGATTACGGAATGATGGATTATTATACCATGGGACTATGCTATGGTG
GAGAATCCATATCCAGTATAGAATAGAGAACCAACCGAGGGCTCCTCAGTGTCCATATAGATATA
TATCCGGCATCAGTTAGAGTTCGGAATCCGGTATCCGCCCCTCTC
Found at i:388227 original size:15 final size:15
Alignment explanation
Indices: 388207--388236 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
388197 GGCCCGGCCG
388207 GTATATAGATATCTC
1 GTATATAGATATCTC
388222 GTATATAGATATCTC
1 GTATATAGATATCTC
388237 TACGACTATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.13, G:0.13, T:0.40
Consensus pattern (15 bp):
GTATATAGATATCTC
Left flanking sequence: Indices 387707 -- 388206
GGGGTTGTCCCCCCTATCTATATAGATAGGGCGGACTAGCCTTCAAACCAAACCTGAGGACCCCT
ATCTATATAGATCTATATGGGGGTTGGGCTACCAAACGACTGGCTAGTTGGGTCGGCCCATACAT
TATATTATGCCGAGGGGGCGGTGGATAAGTGGGCGTTTCGAGAGAGATATATAGATAGGGCCCCC
CATAATACATAATACATGTGATTGATATATGTCTCCCGAGATATATAGATAGGGCGCCCCATATA
GATAGATATCTAGGCTCGATAGAGTTCTATATAGGGGGGCCCCTATAACTATATAGCTCTGAGAT
ATATAGAGAGTTTCGGCGCTGTCGCCATATCTATGACCTAATCTATATAGGGCCAGTAATATAGA
TTCTATATAGATCTATATCTATATAGATATATAGATATAGATCTATATATCTATATATATCGCCC
TATCTCTATATCTGCCCTCTATATCTCTATATACGGGCCCGGCCG
Right flanking sequence: Indices 388237 -- 388736
TACGACTATAGATAGTCGCCCTCCTCCCCAGATATATAGAGAGGGCGGGGGCCGGCCTATCTATC
TGGGGGGGGGCATACCATATAGATAAGATATCCGAGCTGTGCCGATCGCAGCGCAGATCCATCGC
GTGATGAATTCTATACGTCATCTACATGATCGAATGGATTCTATACGTAACATGAGCATGATGTT
TGTTCGCCCGGCCCTCTATTCTATCTGGGAAAGATGGATGCCCCTATCTATATCTATAATAATGG
ATTACGGAATGATGGATTATTATACCATGGGACTATGCTATGGTGGAGAATCCATATCCAGTATA
GAATAGAGAACCAACCGAGGGCTCCTCAGTGTCCATATAGATATATATCCGGCATCAGTTAGAGT
TCGGAATCCGGTATCCGCCCCTCTCTATATATACTTGCGAATCCCTCTACTCTATATGTAGTTCC
ACCTGGCTATTCCCAATCCCAACGTCGCTATGCTAGAATCCTGGG
Found at i:390508 original size:6 final size:6
Alignment explanation
Indices: 390497--390530 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
390487 CTCTCCTCCC
390497 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCT
1 ATCTAT ATCTAT ATCTAT ATCTAT ATCTAT ATCT
390531 TCGGCTAGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.32, C:0.18, G:0.00, T:0.50
Consensus pattern (6 bp):
ATCTAT
Left flanking sequence: Indices 389997 -- 390496
TCTATATATCTTCCGCGAAAGATATATAGATAGGGCCCTATCTATATATCTTCGACCGGATGGAT
TTCAGATATAGAAGAGAGGGCTCGGGGAATATGGAGTTTCATTGGGCGGCTGGGGGATGGATTTC
AGATATAGAAGAGAGGGCTCGGGGAATATAGAGTTCTATATATATAGAGGGGGGGAACAGATAGA
ATATAGGGCCCCACCTCCACCTCTATCATATACTATACATACAGTGGGCCCCCGGCACTCTATAT
CTTATAGATTCTAGATTCTAGAGATCTATTGTATTGATATCGACCGATGGACGATTGACGATGGA
TGATGGGCGATGGAACCACCCAATCTATTCTATACTATACAGCCCAACCGCCCTTCTCTTCTCTA
TAGAGTCTATAGTCTAGTCGGCATATATAGATTCTATATAGAGTCTATAGACTAGGAACCGATGG
ACAATGGGCAACAGCTATCTATATTAGGCAACCGCCTCTCCTCCC
Right flanking sequence: Indices 390531 -- 391030
TCGGCTAGATATAGATAGAGGCACCACTCTATTGTTCACCCGGTCCACTCTCACTCTATTCACGA
AGATATATAGAGAGGCATTGTCCACCCGGTCCACTCTCACTCTATTCACGGATGGACGAGGAACA
ATGGACGATTGAACCCGCCCAGATAGAGATAGAGGCCCGGGCCTATATACCCTATATAGATATGA
TATGGGATAGATATGGGATATGGGATTCCCACTACCACTGTAGTTATAGTCAGTCGTCCCCACTC
CCCCTCCATAGTGGAATAGTATCTAGAACATGACTGATATCATGTCTCATAATGGATGGATGGTA
GATCCCGACCACCCCTCTCCGCTATATAGGAAATTCTATAGGCCAACCAATCACCCCAAAAAACT
CTATATCTTTCCCCATATATAGAGGGTAGGGGGCTCTATATCTTTGTCGATCCCCCTACCCTCTA
TATAGATAGGGCCAGATGAGATAATAAATACGAGCGCATAGCGCA
Found at i:390738 original size:11 final size:12
Alignment explanation
Indices: 390719--390747 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
390709 ACCCTATATA
390719 GATATGATATGG
1 GATATGATATGG
390731 GATA-GATATGG
1 GATATGATATGG
390742 GATATG
1 GATATG
390748 GGATTCCCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (12 bp):
GATATGATATGG
Left flanking sequence: Indices 390219 -- 390718
ATATACTATACATACAGTGGGCCCCCGGCACTCTATATCTTATAGATTCTAGATTCTAGAGATCT
ATTGTATTGATATCGACCGATGGACGATTGACGATGGATGATGGGCGATGGAACCACCCAATCTA
TTCTATACTATACAGCCCAACCGCCCTTCTCTTCTCTATAGAGTCTATAGTCTAGTCGGCATATA
TAGATTCTATATAGAGTCTATAGACTAGGAACCGATGGACAATGGGCAACAGCTATCTATATTAG
GCAACCGCCTCTCCTCCCATCTATATCTATATCTATATCTATATCTATATCTTCGGCTAGATATA
GATAGAGGCACCACTCTATTGTTCACCCGGTCCACTCTCACTCTATTCACGAAGATATATAGAGA
GGCATTGTCCACCCGGTCCACTCTCACTCTATTCACGGATGGACGAGGAACAATGGACGATTGAA
CCCGCCCAGATAGAGATAGAGGCCCGGGCCTATATACCCTATATA
Right flanking sequence: Indices 390748 -- 391247
GGATTCCCACTACCACTGTAGTTATAGTCAGTCGTCCCCACTCCCCCTCCATAGTGGAATAGTAT
CTAGAACATGACTGATATCATGTCTCATAATGGATGGATGGTAGATCCCGACCACCCCTCTCCGC
TATATAGGAAATTCTATAGGCCAACCAATCACCCCAAAAAACTCTATATCTTTCCCCATATATAG
AGGGTAGGGGGCTCTATATCTTTGTCGATCCCCCTACCCTCTATATAGATAGGGCCAGATGAGAT
AATAAATACGAGCGCATAGCGCATAAATGACCTTCGGTATGTGGTGCCCTATAGAGAGATATGGC
CCCCCTCTATAGAGTTCCCTATTCTCTATATGGTATATGGGACCCCCTATCTGATAAATGGGCTG
GGGAGAGGGCCCCCCCTCTATATAGTTCTATATGGCCCGACGCCTATCTATATATGGGGGGCCCC
CCTCTATATAGATGTATAGAGGCGGGCCCATATCCCATATAGAAT
Done.