123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_060419
Parameters: 2 7 7 80 10 50 500
Length:  474330

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38375--38409	9	3.9	9	96	0	61	22	17	22	37	1.94
38404--38429	9	2.9	9	100	0	52	11	0	23	65	1.25
47029--47101	32	2.3	32	80	0	92	36	16	16	30	1.91
47346--47388	18	2.4	18	81	18	54	18	20	25	34	1.96
48733--48927	32	6.1	32	99	0	381	30	19	15	33	1.93
105094--105176	15	5.4	15	65	5	58	37	15	33	13	1.86
105064--105240	31	5.7	31	98	0	327	35	16	33	14	1.89
140603--140738	73	1.9	73	83	4	177	30	21	27	20	1.98
169329--169427	38	2.6	38	95	0	171	21	15	16	47	1.82
177776--177809	6	5.7	6	86	13	52	2	11	0	85	0.71
178623--178681	28	2.1	29	87	3	84	18	28	15	37	1.91
179128--179166	19	2.0	20	90	5	62	20	15	20	43	1.88
192333--192411	39	2.0	39	92	0	131	21	25	18	34	1.96
202189--202213	13	1.9	13	100	0	50	56	8	8	28	1.57
211786--211851	32	2.1	32	91	0	105	40	22	10	25	1.86
222505--222577	32	2.3	32	80	0	92	36	16	16	30	1.91
222822--222864	18	2.4	18	81	18	54	18	20	25	34	1.96
224209--224403	32	6.1	32	99	0	381	30	19	15	33	1.93
265398--265452	28	2.0	28	85	7	76	14	40	14	30	1.86
266681--266715	18	1.9	18	88	11	54	8	22	17	51	1.72
272837--272890	24	2.2	24	90	9	83	37	14	9	38	1.79
295285--295317	16	2.1	16	100	0	66	33	12	12	42	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295285--295326	16	2.6	16	88	7	50	30	9	16	42	1.80
297486--297524	18	2.2	18	100	0	78	35	25	10	28	1.89
298175--298200	9	2.9	9	100	0	52	34	11	23	30	1.90
307557--307590	17	2.0	17	88	11	52	23	5	23	47	1.73
321420--321449	15	2.0	15	93	0	51	20	30	16	33	1.94
336431--336465	18	1.9	18	100	0	70	28	28	14	28	1.95
353597--353654	28	2.1	28	93	0	98	32	31	13	22	1.93
395178--395202	9	2.8	9	100	0	50	32	0	24	44	1.54
395253--395298	21	2.2	21	88	0	65	15	15	39	30	1.88
397944--398034	38	2.4	38	94	1	155	34	13	19	32	1.90
443903--443996	28	3.4	28	73	14	88	20	35	11	32	1.89
454944--455138	32	6.1	32	99	0	381	33	15	19	30	1.93
456483--456525	18	2.4	18	81	18	54	34	25	20	18	1.96
456773--456875	32	3.2	32	73	4	102	30	16	17	35	1.92
467496--467561	32	2.1	32	91	0	105	25	10	22	40	1.86

Tables:   1

The End!