Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt1/NC_060419.1/NC_060419/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           474330
Total number of identified SSRs:                 21
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	13
2	6
3	2

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	total
A	-	-	-	-	-	4	2	6
G	-	-	-	-	-		2	2
T	-	-	-	-	-	3	2	5
AT	-	1						1
CT	-	1						1
TA	-	4						4
CTT	1							1
GAA	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	total
A/T	-	-	-	-	-	7	4	11
C/G	-	-	-	-	-		2	2
AG/CT	-	1						1
AT/AT	-	5						5
AAG/CTT	2							2