Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt2/NC_045036.1/NC_045036/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           779106
Total number of identified SSRs:                 130
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    9


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	103
2	24
3	3

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A	-	-	-	-	-	24	13	4	3	3	1	1	1	1			51
C	-	-	-	-	-	3											3
G	-	-	-	-	-	1											1
T	-	-	-	-	-	26	10	3	2	2	3		1	1			48
AT	-	3	2	2	1				1							1	10
GA	-	1															1
TA	-	7		2		2											11
TC	-	2															2
CTC	1																1
TAT		1															1
TTC				1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	total
A/T	-	-	-	-	-	50	23	7	5	5	4	1	2	2			99
C/G	-	-	-	-	-	4											4
AG/CT	-	3															3
AT/AT	-	10	2	4	1	2			1							1	21
AAG/CTT				1													1
AAT/ATT		1															1
AGG/CCT	1																1