123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_045035
Parameters: 2 7 7 80 10 50 500
Length:  674158

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25922--25964	19	2.3	19	79	0	50	18	18	25	37	1.94
51534--51559	13	2.0	13	100	0	52	46	0	30	23	1.53
121026--121061	18	2.0	18	88	0	54	72	0	13	13	1.13
121130--121161	14	2.4	13	94	5	55	37	12	6	43	1.68
121155--121179	13	1.9	13	100	0	50	40	8	12	40	1.72
147933--148002	35	2.0	35	100	0	140	37	17	8	37	1.80
151087--151134	17	2.8	16	81	12	60	16	37	8	37	1.79
152361--152425	12	5.9	12	69	18	52	46	26	27	0	1.53
162209--162247	19	2.1	19	100	0	78	15	25	20	38	1.92
169644--169686	19	2.3	19	84	8	52	39	0	37	23	1.55
169654--169692	19	2.1	19	90	0	60	38	0	35	25	1.56
169715--169750	18	2.0	18	88	0	54	36	30	16	16	1.91
187095--187137	3	14.3	3	90	0	68	67	0	27	4	1.10
188533--188606	29	2.6	29	97	2	141	43	12	28	16	1.83
208224--208263	21	1.9	21	89	0	62	37	22	22	17	1.94
223440--223571	18	7.3	18	97	0	246	33	26	10	29	1.90
225376--225443	34	2.0	34	100	0	136	32	20	11	35	1.89
225970--226044	21	3.2	24	72	12	75	57	9	22	10	1.61
247295--247330	18	2.0	18	88	0	54	41	13	13	30	1.84
249011--249035	4	6.2	4	100	0	50	24	28	0	48	1.52
254267--254338	38	1.9	37	94	2	126	31	22	25	20	1.98
264498--264629	66	2.2	58	80	19	178	45	19	18	16	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275561--275601	21	2.0	21	95	0	73	12	26	24	36	1.91
342870--342943	29	2.6	29	97	2	141	43	12	28	16	1.83
343775--343826	21	2.5	21	80	0	68	9	23	17	50	1.75
346585--346620	15	2.4	15	95	0	63	22	19	5	52	1.66
352104--352183	31	2.6	31	85	0	115	30	16	28	25	1.96
383992--384016	12	2.1	12	100	0	50	36	32	0	32	1.58
406148--406203	29	2.0	29	96	3	105	33	26	25	14	1.94
420543--420593	2	27.5	2	83	15	65	50	1	0	47	1.12
420543--420591	20	2.5	20	93	0	80	51	2	0	46	1.12
426471--426510	16	2.7	14	88	7	53	12	40	17	30	1.86
444308--444368	33	1.9	33	93	6	108	34	8	4	52	1.53
463637--463669	12	2.7	13	86	13	52	24	12	21	42	1.86
465874--465904	14	2.2	14	94	0	53	48	12	25	12	1.77
482276--482308	16	2.1	16	100	0	66	18	12	15	54	1.71
492707--492742	18	2.0	18	100	0	72	16	33	0	50	1.46
518961--519091	65	2.0	65	100	0	262	32	22	15	30	1.94
520156--520287	65	2.0	65	100	0	264	50	13	16	19	1.78
555494--555549	26	2.2	25	81	9	60	44	3	1	50	1.29
593677--593760	41	2.0	41	100	0	168	33	29	11	25	1.91
606036--606063	14	2.0	14	100	0	56	35	21	7	35	1.81
617422--617459	19	2.0	19	94	0	67	28	18	15	36	1.92
641938--641971	17	1.9	18	94	5	61	73	0	14	11	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641938--641982	18	2.5	17	85	7	54	71	0	15	13	1.15
667138--667218	41	2.0	42	90	2	128	13	28	29	28	1.94

Tables:   1

The End!