Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_031896
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 240024
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Found at i:1192 original size:36 final size:36
Alignment explanation
Indices: 1145--1231 Score: 149
Period size: 36 Copynumber: 2.4 Consensus size: 36
1135 AAAGCCTGAA
1145 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1181 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
1 AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
* *
1217 AG-TGATGGTTGACTC
1 AGAAGAAGGTTGACTC
1232 ATGAAAGTGC
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
35 11 0.22
36 38 0.78
ACGTcount: A:0.29, C:0.16, G:0.26, T:0.29
Consensus pattern (36 bp):
AGAAGAAGGTTGACTCGGCAATCTCAATTTCGTATG
Left flanking sequence: Indices 645 -- 1144
GGAGTAGATGCCGGGGGGAGAAGGAATTCTACGACTGATTGAGCCAACAAATCCTAGCTAGAATC
TAATCTGGAAAGAACTTGGAACTCTCAACCATAGCTTTGATTTGCTTTTCTTATTGGCAGAAGTC
AAGGCGATTTTAATCTCAAAGAGGCCGATAGGACCAGTATCGGACGAGATATTGACAAAAGGAAA
ATCATTCCATTCTTGTCCCTTCTTGGATTTGAAAACGAAAAGTACGTTCGGGCAGAAGTCTTGTA
TGAGTTAGCCACTGCTTCAAGCAGAAAATGGAATTTTCCTTGTTGAAAACAAGAGATTCCAAGAG
GAGTTAGATAGGGAAACGGAGACTTTACCTGTAAGTCAGTATATTGACAGTGCCCCAAGACAATC
TGAAGCACTGACTGGAATCAATCAGCAGCTGAATGCAAGGATTACTTCAATAAACAATTGAAACC
AACAAGACCTTTTCTTTTCCATCAGGAGACCATTCAAAGCCTGAA
Right flanking sequence: Indices 1232 -- 1731
ATGAAAGTGCAATGGAAGGGTGAAAGCCGATGAACGCCTTTCAGTCGAGTCACTGGGGTTCCTCT
CGCAACGAGTGCTCGAGTATATTAGTGTTCAGTATATCATGTTAGTGTTCAGTATAGCCGGGATT
GTAGTTCAATCGGTCAGAGCACCGCCCTGTCAAGGCGGAAGCTGCGGGTTCGAGCCCCGTCATTC
CCGACCTAGGATCTGATGTATCGATCAATTAATCTCTCATCAGTTACGAAATATATAGCTATAAA
AAAAAAAGCTAGAAATAGAATTTAACTTAGTTTCTCAGCCTCTAGGAATTCCTAAGCGTTAGCGA
AGAAAGAAGCCTACTTGAAGAAGGCTGCCAAGAGGAGAGCAAGCGCCCTACCCGAGTCTCCAGCG
AGAAGCGTTTTATATATAATATAAATTATTATCGATCGAAACCTAAAGCCAAGTGCATCGATCGG
TTTCCTTGCGTTGGGAGGGAGATTGAATGAACGCTTGAAAGCTAG
Found at i:18510 original size:12 final size:12
Alignment explanation
Indices: 18493--18519 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
18483 GAGGTTCCCT
18493 CTCGAGGAACGC
1 CTCGAGGAACGC
18505 CTCGAGGAACGC
1 CTCGAGGAACGC
18517 CTC
1 CTC
18520 TTCTCATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.22, C:0.37, G:0.30, T:0.11
Consensus pattern (12 bp):
CTCGAGGAACGC
Left flanking sequence: Indices 17993 -- 18492
ACCATGCCCACTATACTTTCTTCTAAGCCAGCTTTTCACTCTTTGTTTTCGTATCATCTCATTGG
ACTTATTTCAAACAAACTCGTTACACTCGCACCTGATACACGGGAACGAAGAAAACTACATGGGG
AGCACGCTTACACCTGCAAGAACTAAGGGTCCAGACCAAGCACAGACAGATAGAACCAGACATAA
AAAATCTTCCTTTGCACAATGCCTATCAGATATGGAAGGAGGATCTTTCAAGAGAAACTTCCATT
TGATTTTCTAGCTCCGAGAGCTACTTTAATGGCTTGTGCCCATAACAAGTAGTTATGACCATTCA
ACTTTACAGAGGTAATCTGCATACTGACCTGATCAGATGAAGTGTTGGAGGCGGATTTATTTGAG
TTAGAATCAGCCATGACGAATAACGTTGAGAAAGACCACCCAAGAAAGAATAAAGAAGCAACCCC
CACAACCATGGAGAATATGGGAGCAAGCCTAAGAAGAGGTTCCCT
Right flanking sequence: Indices 18520 -- 19019
TTCTCATTATATGATTTGTGTGAACACAGTAAAGTCCCACCATAAGCATTCTCTGCATCTCCACT
GCATTAAATGAAACTAAACGTCCCTTTCAACTTTGGATCAACTGCCTCAATCAGTTTCCCTTTCT
CCCAGTAGCTCCATACCAATCAACAAGCACCGTACCAGCATCATCGACAGGCCTTTTCCCTGTAG
CTACCTCTAGCACCACTAGACCGAAGCTGTAAACATTTCTGTGATGGAACACCATAATAAACATA
TTAAGGAGCAAGATCTCCCATTTTCCCAGCTGGTATTGTAGCTTCCCTGGTTATAGAACTATGTT
CATAGACTTCTGCCTAAATCTCCTAGCTTGGCATTGAATTCTGCATCAAGCATTATATTTCAAGT
CTTAACTAACCCCTATGAATTCTTTCTCTCTCACATTCTGAATGCAGATATGATAGAGCAGACGC
AACTCCGAGAACTAGATTCAACCTTTGCTTTCTTTTCCTCTGGCT
Found at i:100610 original size:39 final size:39
Alignment explanation
Indices: 100556--100675 Score: 240
Period size: 39 Copynumber: 3.1 Consensus size: 39
100546 TTCCTCTCAC
100556 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
1 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
100595 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
1 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
100634 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
1 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
100673 AAA
1 AAA
100676 AGAAAGAAGG
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (39 bp):
AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
Left flanking sequence: Indices 100056 -- 100555
GGTCAGAACGGGGAAAGCTGCTCTTAGAGCTATCTCTTTCCGATCTAGGCAGATGGTTGAATCTA
ATGCGAGTAGCACTAGGCCTAGAGCGGAATATTAGGTAGTACGAGTTGCTATATTTTTCCATCCC
CCTTCGGGAAGAAACTCTCTTTGACTTTTGAGAAGATAGACCCAAGTAGCCCTTGAATGATCATC
CACTATGGTTCAAAAATATCGAAAACCTTCTGTTCTGTGGTTTCAACTGAAAAAGGGCCCCAAAT
GTCAATGTGAATCAGATCAAAAGGTTCATCACAAATGTTATTATGAGATTTAAAAGGTAAGTGTT
TTTGTTTAGCCAAAGGACAGATTTTACAAATGGTCTGATTGACCTTTTTATTCTTATGAGTAGGG
AGTCAATCTGAAAGGATAGCAGTTTTAGAAGAAGGATGGAGCAGAAAGATAGAAAGATCAGTTGC
TGGAAATCAAATATGTAAATAGTCGAGTTATTGCATTCCTCTCAC
Right flanking sequence: Indices 100676 -- 101175
AGAAAGAAGGTTTTGATTCGAGGCGGATCCCTTTTTTCTTTGCCTTTACGAGTAAGAAAGTGGTT
ACGCTCCACTGGGGAGCCGGAACTGTAAATTCCTACTGTGGTTCGAGTCCACAAACCACTGAGAG
CTCTGGCATCGGTTCAGGCTAAATCCTGAAGAAAGCTAGAAAGCGCTGTTTGATGAGCCTGCGTC
CGATTTGTGAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGCCCAGTCGTGCCG
AGGAATTCCCATCCGACCAGAGGAGGGAAGAGAGTGACTAAGCAGCAGCTCCACTTGTCGCGTAC
TTCTTTAGCTGCACCGTCATCGCCGGCCGGACAAACCCTTCCAACAAATGGGGAGTGGGCCAAAG
GAACACGACACATCCAGTGAAGAGATCCCGGACAGGGAAGTCAGAAGGTCTGCAAGCCTCGTCTT
CGCCCCTGCTTTAGCTGCACTTGGTGCGTAAGAGGGAGACCCGGT
Found at i:103464 original size:13 final size:13
Alignment explanation
Indices: 103443--103473 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
103433 CAAAGGTCAA
*
103443 CTAGCTTGCTTCG
1 CTAGGTTGCTTCG
103456 CTAGGTTGCTTCG
1 CTAGGTTGCTTCG
103469 CTAGG
1 CTAGG
103474 GACTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.26, G:0.29, T:0.35
Consensus pattern (13 bp):
CTAGGTTGCTTCG
Left flanking sequence: Indices 102943 -- 103442
ATAGTACGCACACACGAAAGTCAAGGGATTGTCTGGCCCTGCTACCTACCCAACATGAGCACACT
CCGAAATTAGAGTAGCTATCTATTTCATAAGAGACCTCTTGCAGATTGAAGCATGATTGGGCTCT
CCGCTTCTCTTCAGATGGAACTTCGCCATGTCCCTCGAGTACTGTTCCTAGAGTATAGTAGAGTA
CGGATCGATTGAACTGGTTTTTGTCGTACCCCTAACGGTACAGTTATGACCTAATGCGGGGTCTC
TCTCAGGCAGAAGATCAACCGATGTACGATGTTGGACCTAATGAGAGGTCCTTCTCTGTCAGGGT
TTATAGGTCAACTGGTTGCTTCGCTAGAGTAGGACCTAACCCATGTACTGTGAGTGTTGATTAGT
CACCCTGATATCGAGTGAGCATTCGGGGGTGTAGACTTCACACTTTAACAGGTCATCTGTCTTTC
GAAGTTTTCTGTAACACAGAGATGTAGTTGCAAGGCAAAGGTCAA
Right flanking sequence: Indices 103474 -- 103973
GACTTAAGGAGAAGTTATTTTCTGTAGCACAGAGATGACTTTAGTAAGTTGCAAGGCGAAGGCCT
CAACGATTGTGGTTAATCTATCTTGGTATCTTTGTGATGAGGTATGGCTTATCTGTGCTGGGGTG
TGCTTGGGAGTCAAATGCTAGGGTCATGCGAAAAGTCCTATTTCCAATTCCGATCTCATATCTAA
GGAACGGGAGTTCTTAACAGAAGAAAGGCCATAGACTCCGTTTGGTACGTATCTGATATGTGACA
AATCCTAAATCTGCAAGGTATCTTATCTCTCTCAGTTATTAATATGGTGCTGGACTAGCGAAGCA
ACCCTTTTGAAGAAGGAATCTTAGGAGTTCTGCAGCATATGGATGGCTTAAAGGAAGAAATCAGA
CATCTGAGATAAGCAGGGCTGTTGTCTAATCTGAGGAATGCATACGAATCCTATAGTAAGTTCAC
GGGTAATTCTCCGCTTAGTTCAGTAATCTCCTGAAAGTTGGGTGA
Found at i:108357 original size:22 final size:22
Alignment explanation
Indices: 108329--108377 Score: 89
Period size: 22 Copynumber: 2.2 Consensus size: 22
108319 GCCGAAGGCA
108329 CTCGACTAAAAGGTTCAAAGAT
1 CTCGACTAAAAGGTTCAAAGAT
*
108351 CTCGACTGAAAGGTTCAAAGAT
1 CTCGACTAAAAGGTTCAAAGAT
108373 CTCGA
1 CTCGA
108378 GCGTAGCGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.37, C:0.20, G:0.20, T:0.22
Consensus pattern (22 bp):
CTCGACTAAAAGGTTCAAAGAT
Left flanking sequence: Indices 107829 -- 108328
CATAATATTGGATTCAAACCGACGGCCCACCCTTTCTTTGAACCTTGTCAATGATCGAACTTAAA
GATATGAACTGAGTGCCATTTGATGAGTAACTGAGAACAAAGGAGAGGGGTATAGCAAGGATGAA
GTAATGAAAAAGGAAGTCATTGCTAGTAGTAACGACTTATTACGATCCATTGGTTCATATAGAAT
CCATGTCCTAGGTGTATCAAAAAACATTCTTTTCACTAAGCGTATATAATAAAATAGAGTGAAAG
GGTCCACCCCGAAACCAAGGGGATACTAACTAACAGCTGAGTCCTCTCCAAACCGCATGAGATAG
TTGCCCATCATACGGCTCACCAACTTGCCTCTATGGGAGGCTCACTCCGGGCAGGTTCGGATCAC
TTATAATACAAAGCTCGGAGAAGGAGGGAGTTGGGTTAGGAACGCAGTAACTCGACCCCTCATCA
ACTAATTAATGAGACCTTATCCTTGGTGGGAGAGGGCCGAAGGCA
Right flanking sequence: Indices 108378 -- 108877
GCGTAGCGAGAGGTGCTTTAGCAACTCGACTGAAAAGGCGTTCCTCGGAGTCATGACTCGAGCAC
TTGTTGCGAGAGGCACGGAGTGACAAAGGAGCTCGACTGTAAGGCGTTCCTCGAGAGTGAAACGA
GAGGAGAGGTGAGGTTTAAGTTTTCAATATGATTCTTTTTTCGTATTTGTTCGATGAGAAATGCG
AGTCAGTTTTGTCCATTTTTTCTATCCCCCTCTATCAAACAAAATGATCAAAAAGGAAGTTTACT
GGCTTCTTATTCTCGTCTTTGATCTCTTCCATCTCTGCCTCGCTCGTTGTTACCTATATATATTG
AAGAAAGAAACCCTGTAGAGAATGAAGAGGGGCCTAGGATCTTCTTCTCAACAGTGCTTCTCGGG
GCTCCCCCCTGAATAAGTAAGGCCCCGTTAGCCTGGGCGAAGATGGGGATAAGGAATAAGGATTG
AAGCCCCTTAGCTCTGCCAGGCACTGGACAGGGGTTAGCTCGGTA
Found at i:115546 original size:12 final size:12
Alignment explanation
Indices: 115529--115553 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
115519 CACCTTTTGA
115529 AGCTATCAGTTC
1 AGCTATCAGTTC
115541 AGCTATCAGTTC
1 AGCTATCAGTTC
115553 A
1 A
115554 ATCATTCACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.28, C:0.24, G:0.16, T:0.32
Consensus pattern (12 bp):
AGCTATCAGTTC
Left flanking sequence: Indices 115029 -- 115528
AACATTTATATGTTTCGATGCAACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTT
AATTGGTCACATTTTATTCATGAAATGGGTTGGATTGGTATTAGTCTGGATACAGCAAAATAATT
CTATTAGGTCTAATGTACTTATTAGATCTAATAAGTATAAGTTCCTTGTGTCAGAATTGATAAAT
TCTATGGCTCGAATCTTTAGTATTCTCTTATTTATTACCTGTGTCTACTATTTAGGCAGAATACC
ATCACCCATTTTGACTAAGAAACTAAAAGGAGAGGGAAAGAGCTAGCCTTCGTCTCAAGGTTCCA
AACAAGAGAGTAATCAGTTGTGACTACTGAACCTACTAGCTTGCAGAAGTAGCTATCTGAGTAAA
AGCTGCTTTCAAAAGAAGAATAAGGAAGTCTAGCAAGCATTCAAGCAAGTCTCGCTGATCCGCAT
TGTATTGCAAGCTAACCAAAAGGAAAGAGAAGAGTCACCTTTTGA
Right flanking sequence: Indices 115554 -- 116053
ATCATTCACTCGCTAGGAAGAGGGCGTCTCGCATAACTAGGACAGTGAAATTATTTCTTTTCGGA
ATCCGCAATTGGTCAGCCTTTCTCGAGGAACGCCTTTGGTCCGTCTATCTCCTACGAGGAACTAC
GGCCAAGCTAGTTCTTAGTGAGCTTTCTCTCTTCGGGACACAGAACTCCCGGAACTTCCTTTCTT
GATTCACCCAGAACGGAACTTGCTCTAATCCTTCTCGTTCGATCCATTCTTCCTAGCGCTCCTCA
ATTAGATCCATAACTGCTGTTGCTTGTGCAGGAGTAACTGGAGAACTTATAATTTCAATGCAGTT
GTCAACTAAGAAACACCGGAAGTCCATGCGAGCCGGGCTGACATTAACCAATCAGATACCCTCCT
CGAAAGGGCCTGAAATCAAACACCCAGCCCTATTAGATATTAGATTAGAGAAGGGATAAAGTCGA
GAATGACATTCAAATTGAACAACTATGTGGTGTGGGCTTCGCCCC
Found at i:175224 original size:27 final size:27
Alignment explanation
Indices: 175165--175265 Score: 184
Period size: 27 Copynumber: 3.7 Consensus size: 27
175155 AAAGAGCCTA
*
175165 GCTTTCTTGGTTTGATGAGCTTATACTC
1 GCTTTCTTGGTTTGATGAGC-TATACAC
175193 GCTTTCTTGGTTTGATGAGCTATACAC
1 GCTTTCTTGGTTTGATGAGCTATACAC
175220 GCTTTCTTGGTTTGATGAGCTATACAC
1 GCTTTCTTGGTTTGATGAGCTATACAC
175247 GCTTTCTTGGTTTGATGAG
1 GCTTTCTTGGTTTGATGAG
175266 TGAGTAACAA
Statistics
Matches: 72, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
27 52 0.72
28 20 0.28
ACGTcount: A:0.16, C:0.17, G:0.24, T:0.44
Consensus pattern (27 bp):
GCTTTCTTGGTTTGATGAGCTATACAC
Left flanking sequence: Indices 174665 -- 175164
CTTTCTATGAGAGTCGCGAGCTTGTTGTAGTCGGTCCTAAAGAACCTTGCTGCTTACTTGCTATA
TTCCCGCGTTCTTGCATGGCTCGCGTGCAACCCCGCCCTGCTTCTCCCTTCCCCCTCCCCCCCTT
ACCGTCCAAAACTCAGAGGCCGTATGGAGTATAGCCAAGTGGTAAGGCACCGGTTTTTGGTACCG
GCATGCAAAGGTTCGAATCCTTTTACTCCAGATTATGAACACCCGATCGGATCTGTCAAGAACGA
GCTGACGACTACAGGGGAAGCTCTCATTAATTAGTTGATGAGGGGAAGCGGCTGACAGCAGTCCC
TGAGCTAAGCCTTGGAAATCTTAATGCCATAATGCCTTTCAAATCCTCCTAGCCATTATCCTACT
GCAATAATTCTTGCTAAGAAGAACGCCCACCCCTCTCTGTTTGATAACAGTTTCCTCCTAGTTTG
CTTGAAACAGATAAGCTTGCCCAACTGCAACAAAGAAAGAGCCTA
Right flanking sequence: Indices 175266 -- 175765
TGAGTAACAACTTCTGAGTTGACTTGGAAGAAACCATTGTGGATTGTTGTAGTTCCGTGCTAATT
AACAGGTTCTTTGCCTTTATTTAAAACAGGTTTGGCGTTGCATTCATCTAGGCTGTAGCCTCTCA
TACGACAAGAAGGATTTAGATCGGGGGATTTTCGTAAATGATTCGTTGCCAGCGCCCAAACTTTC
CCATCCCCAGCCAAATACGATTGGGCATATCCTTCAAGAGATCAACCAATACGCATACTGCGCAA
CACTAGGGTGGTCGTAGATCAGCTAACTGGGGCGTCCATTGGTGGAACTCAGCCGGAACCTCAAT
ACTGTGTAGTGCCCGAAGAATTACTACGTAATTTTGTCTAGTTTAGTGATAGCAGTAGGTCGGTT
CGCTGTGGCTCTAATGCCGGCGATGAAGCAAACAAATAGGGTGTGATAACATTCAGACCTATCTG
AGACTAAGAGGGGCTGGTTACCGGAGGTATTCCTGTCAGCCTTGT
Found at i:186864 original size:38 final size:38
Alignment explanation
Indices: 186813--186888 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
186803 CCAGGAATGC
186813 CCAATTAGATAAAATAATGATTTTCTTATTGTTTATAG
1 CCAATTAGATAAAATAATGATTTTCTTATTGTTTATAG
186851 CCAATTAGATAAAATAATGATTTTCTTATTGTTTATAG
1 CCAATTAGATAAAATAATGATTTTCTTATTGTTTATAG
186889 ATAGATAATC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.37, C:0.08, G:0.11, T:0.45
Consensus pattern (38 bp):
CCAATTAGATAAAATAATGATTTTCTTATTGTTTATAG
Left flanking sequence: Indices 186313 -- 186812
GAGCTCCTGTTTGCTTTCTGGCAATGAGCTAGCTTAACCCTGATTGCGACAGGCTTAATACAGTC
ATGTTGGATCTCCTATTCGTTCTGCTACCACAGGAAGAGAAAGACTGATTGCGACAGCTCAACCG
GATGAGACATCTCTTATTTACAGAACTGTGCCAACCGAGGAACGCCTACCAACTCCGCCAACCCC
ATTGATTTAGCCGCACCTGAACCCGCAACCGAGGAACGCCTCTCCTTTCAGTCGAGTTCCGTTGG
ACCTCTACTCCGCCTACTTCTTGTGCCGACTTCGACTGCCTTATTTCGGGTGAAGAGTAAGGGGT
GGTAGGCTTAGTAGGGCTCGAACCTACAATATAACCGTTATGAGCGGTACGTTTCAACCAATTAA
ACTATAAGCCCCTACGGATCTCTACATGCAATTTGCTCACTTCGGGAAGAGCGGACGCAAGCAAA
GGGGAGGCCTTTGCTCTATCTGCTTCTTCCTCTTCCCAGGAATGC
Right flanking sequence: Indices 186889 -- 187388
ATAGATAATCTTATATATCTATTATTTAGAATAATAAGAAAATCAAGCAAGCGGTCCTTTCGCGA
CTCAAACTGCCGGTACGCTTTCCGGCTCGCAACGATTCAAACGGGCGGGGGCTCTCTATTTGCTT
GCAATGCCGGCTGTTCGCGTTTAGTTAAAAGTAGAAGTAGAGGGCGCCCACACAACGACCGACGG
ACTCGTGGTATTGAAAACCTCATTAGATGAGAAGGTAGTTGACTGGCAGACCCCTGAATGTACGT
TAGCCAAAAGCCCCTATCCACTCAATCTGGAAAGAGAATAGACCGCCGTGAACTCCGGCGAAAGA
CCCCGTACGACCTGCGGGAGTTGAAGGTTGCTGGCTTGGCTTGCCCGTGGGCCGTGGTATCCTGA
CGTCCCTCCCGCTACGGCTCGCTGTACGTTCCTTTAGCTATAGGCGTGTCCCATCCGATAATAGT
CCGTTCCACCGGAAGCTCAGTGGGGTTTCATACGAGGGTCCCGCG
Found at i:190283 original size:51 final size:51
Alignment explanation
Indices: 190207--190328 Score: 226
Period size: 51 Copynumber: 2.4 Consensus size: 51
190197 AGTCATGTTA
*
190207 GGAGAGGTATTTCTTACTTGACTAAAAAGGTACGGAGTGACTTGACCCTTG
1 GGAGAGGTATTTCTTACTCGACTAAAAAGGTACGGAGTGACTTGACCCTTG
*
190258 GGAGAGGTATTTCTTACTCGACTAAAAAGGTATGGAGTGACTTGACCCTTG
1 GGAGAGGTATTTCTTACTCGACTAAAAAGGTACGGAGTGACTTGACCCTTG
190309 GGAGAGGTATTTCTTACTCG
1 GGAGAGGTATTTCTTACTCG
190329 GAGAGGGAGG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
51 69 1.00
ACGTcount: A:0.26, C:0.16, G:0.28, T:0.30
Consensus pattern (51 bp):
GGAGAGGTATTTCTTACTCGACTAAAAAGGTACGGAGTGACTTGACCCTTG
Left flanking sequence: Indices 189707 -- 190206
GGTCTGGTTATGCTAGCAACCACCAAGAATGCTACGATAGAGATGAGGATTAGCAAAGTGGAACT
TCCAACAGCAGAGCAGACAAAGAGGACCCAGAAGTGACTATGGGAGAAGGGAGAGGTTCTTTCCA
TGCCAGCCTTGACCAATAGATCAGTAATGTTTTGAGAAAGATAGAAGCAGAAGTTCTACTCACTT
TTTGACCAAGATTGAGCCAGATACTTTATAGAAAAGATGGCATTTTTGATGCATACTATGTCATC
AATATTCAGAGGATTGGACCATGTGATTCTAAGATCATCAACATATACTAGAATGTACAGAGCAT
GACCACCGCTCATAAAGAGAGAGAGATAAAGTTGACTGAAAACCAAGCTCAGAGAGTTCTTTCAA
AGCAGCAAGAGTAGTCATGAATCATTCTTCCTTCGATTGGATAATTCCCATTGGATTGTCAGCTA
TTGCATCAAATGTTCCAGCTCCGCCCAATTCTCGAAGTCATGTTA
Right flanking sequence: Indices 190329 -- 190828
GAGAGGGAGGCCACTATCAGCTACTCTGCAACTTCTCATCCCACGGGTTGGCATTTCTCTTTTCT
TGCTCTTTCTTTTCTTTCTCTTTCGGTAGTGGACGGGCTAAAGGGATTTGCTTACGCGCTAGCGC
TTTCGTTCACTTTTCTCACATTTCTAGTACCAACTAATACTAATGAATTCGGGCGAGAGTCTTCA
AGTATAAGGAGATGGTAAATAAACAAGTGCTCCAGTTCCACCGGTTCCTAATTAATGGGGGAGTT
GCTGCGCTCTCTTCTATGTAAATAGAGATTTTCCACGGTAAAACAAGTGCTTGGCTTTGTTACTA
CATCCCGATAAATAGGTTAGGTTACTTTCTTGCTACGCCCGTTGACTAACTAGAAGAAAGAGAAT
GAATAGACAGGATAACTAGTTCCCGTTGGTTGACAACAGCTCCCTTTTCCTTTAGCTTACCAGTT
ATACCTAATGTGGCGCGGTCGACATATTACTATAGGGCGAGCTAT
Found at i:190406 original size:15 final size:15
Alignment explanation
Indices: 190386--190417 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
190376 TTGGCATTTC
190386 TCTTTTCTTGCTCTT
1 TCTTTTCTTGCTCTT
*
190401 TCTTTTCTTTCTCTT
1 TCTTTTCTTGCTCTT
190416 TC
1 TC
190418 GGTAGTGGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.00, C:0.28, G:0.03, T:0.69
Consensus pattern (15 bp):
TCTTTTCTTGCTCTT
Left flanking sequence: Indices 189886 -- 190385
GAAGTTCTACTCACTTTTTGACCAAGATTGAGCCAGATACTTTATAGAAAAGATGGCATTTTTGA
TGCATACTATGTCATCAATATTCAGAGGATTGGACCATGTGATTCTAAGATCATCAACATATACT
AGAATGTACAGAGCATGACCACCGCTCATAAAGAGAGAGAGATAAAGTTGACTGAAAACCAAGCT
CAGAGAGTTCTTTCAAAGCAGCAAGAGTAGTCATGAATCATTCTTCCTTCGATTGGATAATTCCC
ATTGGATTGTCAGCTATTGCATCAAATGTTCCAGCTCCGCCCAATTCTCGAAGTCATGTTAGGAG
AGGTATTTCTTACTTGACTAAAAAGGTACGGAGTGACTTGACCCTTGGGAGAGGTATTTCTTACT
CGACTAAAAAGGTATGGAGTGACTTGACCCTTGGGAGAGGTATTTCTTACTCGGAGAGGGAGGCC
ACTATCAGCTACTCTGCAACTTCTCATCCCACGGGTTGGCATTTC
Right flanking sequence: Indices 190418 -- 190917
GGTAGTGGACGGGCTAAAGGGATTTGCTTACGCGCTAGCGCTTTCGTTCACTTTTCTCACATTTC
TAGTACCAACTAATACTAATGAATTCGGGCGAGAGTCTTCAAGTATAAGGAGATGGTAAATAAAC
AAGTGCTCCAGTTCCACCGGTTCCTAATTAATGGGGGAGTTGCTGCGCTCTCTTCTATGTAAATA
GAGATTTTCCACGGTAAAACAAGTGCTTGGCTTTGTTACTACATCCCGATAAATAGGTTAGGTTA
CTTTCTTGCTACGCCCGTTGACTAACTAGAAGAAAGAGAATGAATAGACAGGATAACTAGTTCCC
GTTGGTTGACAACAGCTCCCTTTTCCTTTAGCTTACCAGTTATACCTAATGTGGCGCGGTCGACA
TATTACTATAGGGCGAGCTATGTTAGCCAACCCTTTCCTCAGCTGCAAGGTCTCTGCCATAAGTT
TCAACCCAAACTCAGGCAACTTAAGCACCGGCTCTAACTTGATAG
Found at i:213787 original size:25 final size:23
Alignment explanation
Indices: 213741--213787 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
213731 TACATGCTTC
* *
213741 ACACAGAAACAACTGCTGTGCAT
1 ACACAGAAACAACAGCTATGCAT
213764 ACACAGAAACAAGGCAGCTATGCA
1 ACACAGAAACAA--CAGCTATGCA
213788 CACTAACTCA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 12 0.60
25 8 0.40
ACGTcount: A:0.43, C:0.26, G:0.19, T:0.13
Consensus pattern (23 bp):
ACACAGAAACAACAGCTATGCAT
Left flanking sequence: Indices 213241 -- 213740
CATGTAACCTTCAAAAGAAGCAATTGAGGATGGAAGCAATCGACCCGGACTAATGGACCTCTCCC
AGCAACAGCCTTCGATGGTCTTCCTCCGCAAAGCCGTTATTCCACTGCAAGTCAAGATTTTCCTT
TTGATCGTAATCGGGATTCGACCAAGTCAACTGCCTTTCCTGAAGCAGATGCCTGAAAAGTGGGG
ATCGAAGCCTAAATCAAGGGATCTAAGCAGCTACAAGCAACAATAGCTACACCCGCCTAGGGACC
ACTCCAGAAGTAAGCTGCGATTAACCAGCTCACTTCCCTCATTCAATAGGGAAGACAACCCGCAG
GGATACATGCATAAACAGGAATACTGCTATGCTTACCTACCTGACCATTCATGCAACAACTTACT
CACATACCAACAAGGGATATGAATTATACTGAAGCTGCAAGCAACAGGAACTAGTGCCGCTTAGC
TACGGTAGTTCACAGGCCGTTCCTCACTACCTCCATACATGCTTC
Right flanking sequence: Indices 213788 -- 214287
CACTAACTCATACCACAACCATTCCTATCGATAGAATACAGGTAATGGCAGATAGGAAGCAGCAC
TTACAGAGGAATCCATACACCGCAGGGATAGAGATTCACAACAGGAGGATAGCTCAAACGAAGAG
AAGAGATATTCTAGACTGACAGGAGCTACAAACGCAGGAGTACGAGCCACTCTCCACGCTCGCTG
GAACAACAAACCAAACAAGAAGAGGAACTAGCAAAGGCCTAACGAGACTTCTAGCAGCATCTTCC
CATTCCGCATAAACAAACAGAGGAATGAAAGACTGACATCACTGCTTTAGCTGCACCGTTGACTT
AGCCGACGCTTTGATTCAATTAGAAATCTAATCACTCGGACAGCCCTGCGCTACACTTCGGGGAT
ACGCTTACCGGGAAGTCCTACGTTCTCTACAACTGGTAGCCCAACTCAACGGGAGAAAGAGGAAG
CAGCCCTATTAGAATAGAAGCCTTCGGAACTACTCTAGCATCTTC
Found at i:219962 original size:33 final size:32
Alignment explanation
Indices: 219924--220009 Score: 76
Period size: 29 Copynumber: 2.8 Consensus size: 32
219914 GCACGGAGTG
219924 ACTCGAGCACTTGTTGCGAGAGGTGCTTTAGCA-
1 ACTCGAGCACTTGTTGCGAGAGGTG-TTTA-CAT
**
219957 ACTC--G-AC-TGAAAG-GAGAGGTTGTTTACAT
1 ACTCGAGCACTTG-TTGCGAGAGG-TGTTTACAT
219986 ACTCGAGCACTTGTTGCGAGAGGT
1 ACTCGAGCACTTGTTGCGAGAGGT
220010 CCAACGGAAC
Statistics
Matches: 41, Mismatches: 4, Indels: 17
0.66 0.06 0.27
Matches are distributed among these distances:
28 2 0.05
29 16 0.39
30 5 0.12
31 2 0.05
32 4 0.10
33 12 0.29
ACGTcount: A:0.24, C:0.19, G:0.30, T:0.27
Consensus pattern (32 bp):
ACTCGAGCACTTGTTGCGAGAGGTGTTTACAT
Left flanking sequence: Indices 219424 -- 219923
AGTGCTTCCCCTACTACGGCCTTCCAAACAAAAGGTCCCAACAGGAGGGGCAAAGCCGGACTCAC
TAGGTGGATGACTTCGATCCGTATCAAAGATCCCACGAACGCAGCGGAAAAGACTAAGAAGAGAT
TGAGAATCCCCCTCAGTGGTCCTTTCAAACGAAAGTAATAAATTCGAAATACAAATAGGAAGCCC
ACCAGTGCGAAGAATGAAACGCACGTAGTGGTCAGAATAGCGCTTCCTTCTGATCCTAGAAAACG
TCGTGTTAATTCCATACGAATCAGTACTGAGAAGCATGTGCCCATCACTCCAGCAATGGCACCGA
AAATGAAATAGAGAGTCCCTATATCCTTGTGGTTTGTGGAGAACAGCCATCGAACCAGATTTTTC
ATAAATTTGAGATTTTTTCGTTTCTTTCCTTATCAGAGAGGGGCCCCTTAGGTATTTAGTAACTC
GAGCATTTCTTGTTTACTCGAACAGCAAAGGAGAGGCACGGAGTG
Right flanking sequence: Indices 220010 -- 220509
CCAACGGAACTTACCGAGTGAAAGAGTTATTCTATGAAATAAAATCTCGTTTTTTCATCACATAT
ACAAGCTAAAACTACAGCCAACAGGGTGGAAGTTGTGTCTTTACAGTAACTCTCCTCTCTTCACA
TGGAGTAGCTCATCTACCTTCTCCTACCTCAGCAGAACACTTCTCGGACAGTCAGCAGCAGCAGA
GCACATTCCTACTTACATACATGATTCAAACAACACTTCCACACCCATCGAAGTGGGAGTAGACC
ATCCCTACCATGGAAGTAGGAGAAGAGAACAAAGACAATTAGACAGAACATAATTCGCATTATAT
AATTGAATCAATTCTCAGGAAAAGAGAAACTGTGGTGTAAACTCTACTACAATAGGGTTTCACAG
ATAAAAACTTTCTTCCTCGAATTGAATGAAGTTTTGGAAGCTACATTCTAATTAAGACAGCCCGG
AAGCCCTAGGACTACACTCCAACAAGATCACGCAACAGACGTTAC
Found at i:221274 original size:26 final size:27
Alignment explanation
Indices: 221226--221289 Score: 103
Period size: 26 Copynumber: 2.4 Consensus size: 27
221216 ACCCAAGCTA
221226 GGCTGAAGGCAGGACTCTATTAAGTAC
1 GGCTGAAGGCAGGACTCTATTAAGTAC
*
221253 GGCTAAAGGCA-GACTCTATTAAGTAC
1 GGCTGAAGGCAGGACTCTATTAAGTAC
*
221279 GACTGAAGGCA
1 GGCTGAAGGCA
221290 AACCAAGTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
26 24 0.71
27 10 0.29
ACGTcount: A:0.33, C:0.19, G:0.28, T:0.20
Consensus pattern (27 bp):
GGCTGAAGGCAGGACTCTATTAAGTAC
Left flanking sequence: Indices 220726 -- 221225
CCTTTATTAAACAATTCACTACTTGGTGAATACTTGGGCACTACTTGGCTACTAGTTGACTACTT
GGGAAACTAGTTGACTACTTGGATAGTTTACTACTAGGCTAGGGAACTACTTGACTACTGAACCC
CAGGAATACACTACTTGCCTAGGGAACTACTTGGGAAGTCATCTCTTTACTTAACGAACTAACCA
CTCAGGGATTCAAATCCACGATACTCCTACCATCTGCTTGATCCAGTTGAAAACTTGACTCCGAC
TTCACATCAGCCCTTAGGGTCAACACAGCTCCTCTTATCCTTTACTCTTTCTATGCCTGGATTCC
TATGCCTGTTTTACCTCGAGTTGGAATTCAGTGGGAGAAATTCCAACAAAATGAAGTGGTAGAAA
TTCTCCAGAAAACGAAAACGGCGATTCCAACTCTACAATCAAGGCAGAACGCAGGGAGGAGAAGA
GAATAGAATAGAATAGATTATAGACGGCGGACCGGACCCAAGCTA
Right flanking sequence: Indices 221290 -- 221789
AACCAAGTAAGTGCGGTTTCAAACAAAGGTGAAGGAAAGGTACGATCGGTGGACAAGGAATCGGT
TGAGATCGAAACCATATTCGTAGGACGCGTACCCAATAGCGTTTCCAGGGGCCTCATCCCGGGGG
CAAGCCGGGGCATCAGTACGCGCTAGGCCTATCACTCGGAGCCCGGGCGATCGACTCCTACTCTT
TATTTAGAGGCGGGAATTGTCCTAAAGTAGCCATAGCGTTGATTGCTCTCCTTGTTCTATTGTAT
GGGCGAATTATCTTAACGAAAGCCTCCCTCGTGTGAGGGTTGTCATAACTTTTGTCTATCCGCTG
TTAAATGACTTCACTTAATAGAGTCCTAGGGGCAGTCTCTTTGAGAAGGGGCCATATTTGTTTTG
ATTAGCTGTCCCAGGGAAAAGAGAAAGAAAAGTACAAATACTAATCTTTCTTGAGTTAGACCTCA
CCTAATATGGACTCAGAGGCCAAGAGTTCCGACTATCGAATCAAA
Found at i:230358 original size:18 final size:18
Alignment explanation
Indices: 230330--230373 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
230320 CACCCCAAGT
* *
230330 GAGCGGAATCCTCCTGTTA
1 GAGC-GAATCCACCCGTTA
230349 GAGCGAATCCACCCGTTA
1 GAGCGAATCCACCCGTTA
230367 GAGCGAA
1 GAGCGAA
230374 GGAAGGAAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 19 0.83
19 4 0.17
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.18
Consensus pattern (18 bp):
GAGCGAATCCACCCGTTA
Left flanking sequence: Indices 229830 -- 230329
CTGATTAGCAGCACAAAGATAGCACGGTGGAGTAAACAACGCCAAGCCTACGCACAACAAGAAGG
AACAGTGAAGCTGCCAAGCATCAGCATTACCATAAATGTGAGTTAATTACTGCAAGGAAAGAGAA
GGAATAAAAGACAGGTCTTCAAAGGAACAATGATCGGACGAAGGTCTCGAAATGGCACAGTAACA
AAGGAACAACTGTGCTGGACTCAGCACCTACCATAGGTCAACGTCTTTCGAGAAGAAGTCCTGGG
GAAGATGTCTAGGCATAAGCAGCACCCGGTCATAAGTAAACAAATGTTGCTTAAGGAGCCAATAC
AACACAATCAGAGGACTACTTTACGCTTGAGAGGGCCGATCAGCTCATACCAACAAAACAAAGAA
GATGGCAATGCTGTGGAGTAAACCGGCAGTAAGTAAATACCTGGGAAAGGCTCGGTAGCACACCG
GAGGCAACAAAGAAAGAGAGGTGCATACGCTACTCCACCCCAAGT
Right flanking sequence: Indices 230374 -- 230873
GGAAGGAAGATAGAATAACGGCTTAATCCTCACACTATTGGTGCTTGGTACAACACAGTAATGTC
CTCAATGTCTATAAATGGCACAATAAACACGATACCTCGGATGAAGGACAGTCTCGAAATGGCAC
AGTAAACTCGGACGAATAAAAGAATTGTAATTGAAAAGGCTACACTTCCTCGAATAAAAAGGACT
TTATCGACACAGTAAACTCAACAAAACACTAGGAGACAATGGGCACAAGGAACCAAGACAAGACA
CTGGTAACAGGAACAAGGCACTGATCGGTGCCGCTCCTTAAACAACAGCTTCTTCTCAGCAGTGA
ATGGTAGTAGTCCGAAGTAGCAACAGTCGACTGTAAGGAAGAAGAAGCATACCAGATACCGGTCA
ATCAACAGCCGATAAGTCGTCAATCTTCGAGACAAACAAACCAAGCTTCGAAGCTGAGGAAGCAG
TGCACAGGGCAGGAATGCCGATAAGCAAGGGAATCTTCAATGGAT
Found at i:233557 original size:39 final size:39
Alignment explanation
Indices: 233503--233622 Score: 240
Period size: 39 Copynumber: 3.1 Consensus size: 39
233493 TTCCTCTCAC
233503 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
1 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
233542 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
1 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
233581 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
1 AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
233620 AAA
1 AAA
233623 AGAAAGAAGG
Statistics
Matches: 81, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 81 1.00
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (39 bp):
AAACTATCAATTTCATAAGAGAAGAAAGATCGTTTTTCG
Left flanking sequence: Indices 233003 -- 233502
GGTCAGAACGGGGAAAGCTGCTCTTAGAGCTATCTCTTTCCGATCTAGGCAGATGGTTGAATCTA
ATGCGAGTAGCACTAGGCCTAGAGCGGAATATTAGGTAGTACGAGTTGCTATATTTTTCCATCCC
CCTTCGGGAAGAAACTCTCTTTGACTTTTGAGAAGATAGACCCAAGTAGCCCTTGAATGATCATC
CACTATGGTTCAAAAATATCGAAAACCTTCTGTTCTGTGGTTTCAACTGAAAAAGGGCCCCAAAT
GTCAATGTGAATCAGATCAAAAGGTTCATCACAAATGTTATTATGAGATTTAAAAGGTAAGTGTT
TTTGTTTAGCCAAAGGACAGATTTTACAAATGGTCTGATTGACCTTTTTATTCTTATGAGTAGGG
AGTCAATCTGAAAGGATAGCAGTTTTAGAAGAAGGATGGAGCAGAAAGATAGAAAGATCAGTTGC
TGGAAATCAAATATGTAAATAGTCGAGTTATTGCATTCCTCTCAC
Right flanking sequence: Indices 233623 -- 234122
AGAAAGAAGGTTTTGATTCGAGGCGGATCCCTTTTTTCTTTGCCTTTACGAGTAAGAAAGTGGTT
ACGCTCCACTGGGGAGCCGGAACTGTAAATTCCTACTGTGGTTCGAGTCCACAAACCACTGAGAG
CTCTGGCATCGGTTCAGGCTAAATCCTGAAGAAAGCTAGAAAGCGCTGTTTGATGAGCCTGCGTC
CGATTTGTGAGTTGGTTAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGCCCAGTCGTGCCG
AGGAATTCCCATCCGACCAGAGGAGGGAAGAGAGTGACTAAGCAGCAGCTCCACTTGTCGCGTAC
TTCTTTAGCTGCACCGTCATCGCCGGCCGGACAAACCCTTCCAACAAATGGGGAGTGGGCCAAAG
GAACACGACACATCCAGTGAAGAGATCCCGGACAGGGAAGTCAGAAGGTCTGCAAGCCTCGTCTT
CGCCCCTGCTTTAGCTGCACTTGGTGCGTAAGAGGGAGACCCGGT
Found at i:236411 original size:13 final size:13
Alignment explanation
Indices: 236390--236420 Score: 53
Period size: 13 Copynumber: 2.4 Consensus size: 13
236380 CAAAGGTCAA
*
236390 CTAGCTTGCTTCG
1 CTAGGTTGCTTCG
236403 CTAGGTTGCTTCG
1 CTAGGTTGCTTCG
236416 CTAGG
1 CTAGG
236421 GACTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.10, C:0.26, G:0.29, T:0.35
Consensus pattern (13 bp):
CTAGGTTGCTTCG
Left flanking sequence: Indices 235890 -- 236389
ATAGTACGCACACACGAAAGTCAAGGGATTGTCTGGCCCTGCTACCTACCCAACATGAGCACACT
CCGAAATTAGAGTAGCTATCTATTTCATAAGAGACCTCTTGCAGATTGAAGCATGATTGGGCTCT
CCGCTTCTCTTCAGATGGAACTTCGCCATGTCCCTCGAGTACTGTTCCTAGAGTATAGTAGAGTA
CGGATCGATTGAACTGGTTTTTGTCGTACCCCTAACGGTACAGTTATGACCTAATGCGGGGTCTC
TCTCAGGCAGAAGATCAACCGATGTACGATGTTGGACCTAATGAGAGGTCCTTCTCTGTCAGGGT
TTATAGGTCAACTGGTTGCTTCGCTAGAGTAGGACCTAACCCATGTACTGTGAGTGTTGATTAGT
CACCCTGATATCGAGTGAGCATTCGGGGGTGTAGACTTCACACTTTAACAGGTCATCTGTCTTTC
GAAGTTTTCTGTAACACAGAGATGTAGTTGCAAGGCAAAGGTCAA
Right flanking sequence: Indices 236421 -- 236920
GACTTAAGGAGAAGTTATTTTCTGTAGCACAGAGATGACTTTAGTAAGTTGCAAGGCGAAGGCCT
CAACGATTGTGGTTAATCTATCTTGGTATCTTTGTGATGAGGTATGGCTTATCTGTGCTGGGGTG
TGCTTGGGAGTCAAATGCTAGGGTCATGCGAAAAGTCCTATTTCCAATTCCGATCTCATATCTAA
GGAACGGGAGTTCTTAACAGAAGAAAGGCCATAGACTCCGTTTGGTACGTATCTGATATGTGACA
AATCCTAAATCTGCAAGGTATCTTATCTCTCTCAGTTATTAATATGGTGCTGGACTAGCGAAGCA
ACCCTTTTGAAGAAGGAATCTTAGGAGTTCTGCAGCATATGGATGGCTTAAAGGAAGAAATCAGA
CATCTGAGATAAGCAGGGCTGTTGTCTAATCTGAGGAATGCATACGAATCCTATAGTAAGTTCAC
GGGTAATTCTCCGCTTAGTTCAGTAATCTCCTGAAAGTTGGGTGA
Done.