123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_014487
Parameters: 2 7 7 80 10 50 500
Length:  253413

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11152--11187	18	2.0	18	100	0	72	50	22	11	16	1.77
23276--23305	14	2.1	14	93	0	51	23	10	46	20	1.80
44813--44852	12	3.6	12	74	19	50	10	27	0	62	1.27
44811--44852	21	2.0	21	100	0	84	9	28	0	61	1.27
44916--44970	24	2.2	26	83	16	87	25	10	0	63	1.27
44923--44970	24	2.0	24	100	0	96	29	8	0	62	1.24
48806--48847	17	2.5	17	96	3	77	47	16	14	21	1.82
55938--55992	10	5.5	10	86	0	74	0	20	23	56	1.42
55938--55992	20	2.8	20	82	0	83	0	20	23	56	1.42
62843--62875	17	1.9	17	100	0	66	45	6	30	18	1.73
77096--77120	12	2.1	12	100	0	50	40	0	60	0	0.97
77240--77280	18	2.2	19	95	4	75	29	14	36	19	1.92
78388--78435	24	2.0	24	84	8	62	10	27	22	39	1.87
81390--81424	6	5.8	6	96	0	61	31	17	2	48	1.61
87258--87287	15	2.0	15	100	0	60	46	13	0	40	1.43
87299--87340	17	2.4	18	96	4	77	35	2	26	35	1.70
96079--96113	18	1.9	18	100	0	70	25	17	28	28	1.97
101807--101887	32	2.5	33	80	9	96	64	2	14	18	1.40
103488--103529	21	2.0	21	100	0	84	38	9	23	28	1.86
106319--106360	6	7.0	6	100	0	84	16	16	33	33	1.92
115723--115751	14	2.1	14	100	0	58	34	34	6	24	1.82
127913--127938	5	5.2	5	100	0	52	19	19	19	42	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137491--137567	36	2.1	36	97	0	145	28	18	10	42	1.83
138770--138804	14	2.5	14	95	0	61	17	22	25	34	1.96
147408--147436	15	1.9	15	100	0	58	20	27	0	51	1.47
153335--153364	9	3.3	9	95	0	51	60	10	6	23	1.52
155955--155993	12	3.0	12	80	20	51	61	15	5	17	1.51
167377--167452	39	1.9	39	94	0	134	22	25	19	32	1.97
179850--179879	10	3.0	10	100	0	60	30	20	10	40	1.85
182518--182554	19	1.9	19	94	0	65	45	8	5	40	1.56
182605--182636	13	2.5	13	100	0	64	28	28	21	21	1.99
184928--184965	11	3.5	11	82	10	51	39	0	0	60	0.97
188760--188788	14	2.1	14	100	0	58	34	20	37	6	1.80
189062--189091	15	2.0	15	100	0	60	26	26	26	20	1.99
192321--192363	18	2.4	18	81	18	54	18	20	25	34	1.96
198016--198058	19	2.3	19	100	0	86	32	13	39	13	1.85
198995--199031	19	1.9	19	100	0	74	43	8	10	37	1.69
219601--219626	12	2.2	12	100	0	52	34	23	11	30	1.90
222007--222038	13	2.6	12	90	9	55	62	0	3	34	1.11
231361--231445	44	1.9	44	92	0	143	11	29	28	30	1.92
235677--235765	46	1.9	46	100	0	178	52	2	22	22	1.58
235809--235844	16	2.2	16	100	0	72	30	11	19	38	1.86
237005--237094	36	2.5	36	96	0	162	56	2	4	36	1.32
237062--237088	14	1.9	14	100	0	54	62	0	7	29	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
241290--241343	27	2.0	27	88	0	81	29	24	29	16	1.97
241791--241830	20	2.0	20	90	9	64	12	35	20	32	1.90
243386--243444	23	2.6	23	91	0	100	8	25	10	55	1.61

Tables:   1

The End!