Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_038221
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 447106
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:52440 original size:28 final size:28
Alignment explanation
Indices: 52354--52432 Score: 158
Period size: 28 Copynumber: 2.8 Consensus size: 28
52344 TTGCTTACAG
52354 AGTCAGGGCTTTAGAACTGACTTTCACA
1 AGTCAGGGCTTTAGAACTGACTTTCACA
52382 AGTCAGGGCTTTAGAACTGACTTTCACA
1 AGTCAGGGCTTTAGAACTGACTTTCACA
52410 AGTCAGGGCTTTAGAACTGACTT
1 AGTCAGGGCTTTAGAACTGACTT
52433 GTTAAAGTAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 51 1.00
ACGTcount: A:0.28, C:0.20, G:0.23, T:0.29
Consensus pattern (28 bp):
AGTCAGGGCTTTAGAACTGACTTTCACA
Left flanking sequence: Indices 51854 -- 52353
TCTGCATCCACTGCCTCCCAAATGTCATCTTGGTTGACTTCCGGGTAAACAGGGGGTACACCGGG
ATTCCCCGAGGTGCCCGAAGACGGCCCAGCTTCCTCCATGAAGAAAGGAGCGAGGACATCGTAAA
AATCAGAATACCATGGAAAAGGAAAAGAGAAAAGCCAATTTGTCATAAAACCTATAGTAATACTT
TTCAGAAGAGTCCTACATAAAGACCAAAATAGAAGGTTTTCTTTAAATCGTTTAGCCCGCAGAAT
CTTTTCCATTTGCATTTGTTTACCGGGCTTGGACCATGTCTCCCGAACAATTTCAGTACATATGG
CGCAAGACGATTCCACATATCGAGGTCGGAATGGGATCGGGTGTTTTCACGTCTCACCGTAGTGC
CCGCGGTTTGTCTTGATTTCCGATTGATGAACAAGAAGGTATTACTTGCTTACAGAGTCAGGGGC
GTAGCGCTTACTTAGTGCTTGCGCTAAGGTATTACTTGCTTACAG
Right flanking sequence: Indices 52433 -- 52932
GTTAAAGTAAGGAACGAAGTGCTCGACTGTCAAGGAGAGGATTGTAGATCTGACTTGAACAAGTC
AGGAAAATGGAACGATTTTCTTTTTTGACTCGCCCCCGGTGTCCTTTGGACCCAAAGCCCGCCCG
CATTCCAGCAAGCTAGCCCCGTAGGTTGGGGGAAGAGGGCATTTCCATCGCGAAGGATTCAATCC
AGCCACAGGTTCCCCTACGGCTACCTTGTTACGACTTCACCCCAGTCGAAGACCCCACCGTGGTA
TGCGCCAATAAGACCACCAAAAGCCTTTGTGGCACTAGTGGTACACAGAAGTCATGGGTGATCAT
TGGTCCGATGCTTCGGGCGAAACCAATTCCCAGGGTGTGACGGGCGGTGTGTACAGGGCCCGGGT
ACATATTCACCGCGGCATGCTGATCCGCGATTACTAGCGATTCCAACTTCATGTTCCCGAGTTGC
AGAGAACAATCCGAACTGAGGCAATCTTTCCGGATTCGCTCCGCC
Found at i:61619 original size:18 final size:18
Alignment explanation
Indices: 61596--61638 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
61586 CCACCTTGTT
61596 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
61614 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
61632 GACTATG
1 GACTATG
61639 GCAGGGCTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 61096 -- 61595
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCCACCTTGTT
Right flanking sequence: Indices 61639 -- 62138
GCAGGGCTTTAGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTGA
AGATTTAAAAGGCGAGCACTGAAATGAGAAATTTCATTCGTGACGCTGAACGACACATTCGAAAA
CTAAAGCGCACACTAGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCCGGCAT
GTTCGCCTGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACAAAAAGTGTC
CGCCCGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTAGGGCGACCGG
GCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAGAGTGAGGGGA
AGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCACTCCAACAGACAGGCATGGTTCTGTAGTCA
AAGCAACTTCGTCACTTTCGTGTACCCATCGGACGGCAGCCCTTT
Found at i:64007 original size:28 final size:28
Alignment explanation
Indices: 63976--64052 Score: 91
Period size: 28 Copynumber: 2.8 Consensus size: 28
63966 CGAATAGGGC
*
63976 AAGGGAGAAAGAACTGACTTGATAGAGT
1 AAGGGAGAAAGAACTGACTTGAAAGAGT
**** *
64004 AAGGGCTTTAGAACTGACTTTAAAGAGT
1 AAGGGAGAAAGAACTGACTTGAAAGAGT
*
64032 CAGGGAGAAAGAACTGACTTG
1 AAGGGAGAAAGAACTGACTTG
64053 TGAAAGTAAG
Statistics
Matches: 37, Mismatches: 12, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.39, C:0.10, G:0.30, T:0.21
Consensus pattern (28 bp):
AAGGGAGAAAGAACTGACTTGAAAGAGT
Left flanking sequence: Indices 63476 -- 63975
GGGTCTCGGTTGATTTCCCTTCCTTTAGCTACTCAGATGTTTCAGTTCGCTAAGTTTTAAAAGTC
CAAAGAGCGCAGACTAGCCACGGAGCTTGGATACGGTTTCCCGATCGGAGATCCATGGATCACAG
ACGGTATCTCCCCATGGCCTTTCGCCTCTGAAAGCGTCCTTCCTTCTCAATGCCCGGGCATCCAT
CCAATGCATTCTTTTCGATCTTGTACCTTAACCTTAGTACACTGAACACCAACCCAATCTCAAGG
AAAAAAAGAAAAACTACAAGCAACTAAAGAAGGGTGACGAAGCTTCTTTGCATCCCATAGTGCTG
TCGCACTAAGCGACTACCGTTCCAGAGTCGTACAACGAAGTGATTAGCATACCAGAGTGACGCAA
GGCTCTAAGCTCGTACCTTATAGCTCTTTATGCTCTCTCCGCTCGCTCCTTTTCGTAGCGTAGAT
CTTGATTCTCTTACGATATTTTGAGAGGAGTGAAGCGAATAGGGC
Right flanking sequence: Indices 64053 -- 64552
TGAAAGTAAGGAACGAAGTGCTCGACTGTCAAGGAGAGGATTGTAGATCTGACTTGAACAAGTCA
GGAAGACATCGCACTTTTTTAACCTTACCTTACCAAAGTAAAGTATCAAGCTGTCTTTGCTTTGC
CAGCGGATTCCAATTCTGCTGTGCCGGTGCGCAAAGCAAGCACGCTTAGACTGCGATGTGCAATC
TTTGGTCTGCCTATCATTGTCCATTAAGGGCTGACTCCGCTAGGCAAGAGGACCACTACTGGGAT
TATTTAACTACTAACTGATGACCAGGGGACTACTCTGTCTGCTTTTTCCACTACTGATATTGACT
GACCTGTTGAGAAGATAGCTGCAGGAAAAAGAAAAGAAGTAGAGTTAGGTTGTGTTCTAGTGTGT
AAGCATCTCTTTCCTCGGTCGATTCGTCTGCTCATTCAGCCTATGATTCTTATCCAATTGTTTCT
TCCGAAAAGTCTTATGAAACGGGAGATAGGCATTCGGATTCGTTA
Found at i:64591 original size:24 final size:24
Alignment explanation
Indices: 64549--64597 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
64539 ATTCGGATTC
* *
64549 GTTACTTGGGGCTGATGAGGATGA
1 GTTACTTCGGGCTCATGAGGATGA
* *
64573 GTTACTTCGGGCTCCTGAGGGTGA
1 GTTACTTCGGGCTCATGAGGATGA
64597 G
1 G
64598 GAATTATTCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.16, C:0.14, G:0.41, T:0.29
Consensus pattern (24 bp):
GTTACTTCGGGCTCATGAGGATGA
Left flanking sequence: Indices 64049 -- 64548
CTTGTGAAAGTAAGGAACGAAGTGCTCGACTGTCAAGGAGAGGATTGTAGATCTGACTTGAACAA
GTCAGGAAGACATCGCACTTTTTTAACCTTACCTTACCAAAGTAAAGTATCAAGCTGTCTTTGCT
TTGCCAGCGGATTCCAATTCTGCTGTGCCGGTGCGCAAAGCAAGCACGCTTAGACTGCGATGTGC
AATCTTTGGTCTGCCTATCATTGTCCATTAAGGGCTGACTCCGCTAGGCAAGAGGACCACTACTG
GGATTATTTAACTACTAACTGATGACCAGGGGACTACTCTGTCTGCTTTTTCCACTACTGATATT
GACTGACCTGTTGAGAAGATAGCTGCAGGAAAAAGAAAAGAAGTAGAGTTAGGTTGTGTTCTAGT
GTGTAAGCATCTCTTTCCTCGGTCGATTCGTCTGCTCATTCAGCCTATGATTCTTATCCAATTGT
TTCTTCCGAAAAGTCTTATGAAACGGGAGATAGGCATTCGGATTC
Right flanking sequence: Indices 64598 -- 65097
GAATTATTCCCTGAAGCCGTTGATCCAGAAAGAGAATTACCACCATCAGATGATGACCCCTCAGA
GATAGAAGTCCAAATCCGTTATTTTGACCTTGACCTGCCTCTTCCCCAATGGGCACAAGATGCTA
CAAACTATCATACACGGGCCACTCAAGAGTTCATATCCAATCTGGACTTCTACTTTAGGCAACGG
AATCGTGCAGAGATTCTCTACCGAATCGAACTCAAGCTCCTAGCTAAAGACCGCCTGAAAGAGGA
GCGGATCGGAATTTGGCCTGATAATATAGCTTTTCCTTGACGAGCTCATCTCAAAAGTATAGGAA
GACATACGAAAGGAAGAATGTAGAACTGCAAGAAGTCACTTCCAAGGATACAACTGCTGGGATTG
CGAGACTCCCGGAAAGACATGCAAATACATTCGCGCGGCTACAAGAGAGTTCTTTTACTGTGTCA
ACCTGCTTAATGAATGGTTTGGGGCTTTCGTTGACAGTCCCTATG
Found at i:69122 original size:28 final size:27
Alignment explanation
Indices: 69091--69173 Score: 78
Period size: 28 Copynumber: 3.0 Consensus size: 27
69081 TACTAACCTT
69091 ACTTTAACAAGTCAGTTCTAAACCCCTG
1 ACTTTAA-AAGTCAGTTCTAAACCCCTG
* **
69119 ACTTGTGAAAGTCAGTTCT-TTCTCCCTG
1 ACTT-TAAAAGTCAGTTCTAAAC-CCCTG
* *
69147 ACTCTTTAAAGTCAGTTCTAAAGCCCT
1 ACT-TTAAAAGTCAGTTCTAAACCCCT
69174 TCAAGCCTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 8
0.75 0.12 0.14
Matches are distributed among these distances:
27 1 0.02
28 40 0.91
29 3 0.07
ACGTcount: A:0.27, C:0.27, G:0.13, T:0.34
Consensus pattern (27 bp):
ACTTTAAAAGTCAGTTCTAAACCCCTG
Left flanking sequence: Indices 68591 -- 69090
TAAGATCAACTGCTACGTCGATCCTTAAAGTTTGACTCGTTTTTTTCCGAGCTAAGACGTGGTTC
TGCTCTCATTGGTGCTCTCGCTTTTCATCTTTTCTGTTACTTAAGCTATTTTCCGCCTCAGTCTT
CGTCGTTCCATTTGTCCCCGTCCCAGTGATACTTATAGGTCCATGTACCATCTCCATGACTCACC
GTCCCTAGTGATATCTGAAAGGTGTAAAGATATTGAAGCGAAAGCAGACATGCTGCTCACTGGCT
AGATCGGAATGTCTCTACCTTAAAAAACTCCTTTTCCTGTAAGGAAGCTTGAAAGAGGGAATTCT
CTGATCTGATCTATGATCCGGAAAGATAGATAGTCTTTTTTCGATTCCGCGCATTGGAACTTCAA
AGGGCTATTCATAAACTTAAACAGCCTTTATTCTTACCTCTTATTGTCGGAGATAATCGGAGAGA
TATTAGTATTCCTATCAATTCCTTTTGAATAAAGCTACTAACCTT
Right flanking sequence: Indices 69174 -- 69673
TCAAGCCTTTGAAACTATTTCAAATAGAATCTTTTCGGGCCTCTACCAACAACCAAGACGCATGA
AAGCGGTTTCCAGCGCTGCTGGGCAGAAAGACATGATGGCATGAAACTCGATTACGTACGCTGAT
TGTTCGTCCACTTCAAACGCTCAAAACATACCATTTTCCGTGTGAAATGACAGGGATTGGTTTGG
TTACTTAGGGAATTCCAAGCAAAGCAATCTACGCAATTTCCGGGTTCAGTAGTAGGAAAGAAAGG
GACCTCTCACTCAATTCAATAACATGTATGTTCTAGGGCATCTTTTTAGAATAATAATGTTCGCA
TTTTACCAGGCTTTTTGGACGTTCCATGATTAAACCGCCTAGCGGCACTTTCGAGATGCCACCTT
GTTTATAAAAAAAGTATTTTAAATTCCATTTGACTCGGGGCGGCAGGGACCCTCCAACAGAAACC
TCGTCTTTTTTGTCGTCGATAAGTTCTCCCTCAGTGCCCTACTAT
Found at i:84910 original size:21 final size:21
Alignment explanation
Indices: 84872--84911 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
84862 AGACGGCCTG
*
84872 TAGAAGTTGTGTTTTTGACTA
1 TAGAAGTTGTGTTGTTGACTA
84893 TAGAGAGTTG-GTTGTTGAC
1 TAGA-AGTTGTGTTGTTGAC
84912 CAACGAAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.23, C:0.05, G:0.30, T:0.42
Consensus pattern (21 bp):
TAGAAGTTGTGTTGTTGACTA
Left flanking sequence: Indices 84372 -- 84871
TGTGGAACATGGATTAGCATTATGTCATTCCTACAAGTGATCGCCCATCCAGGATTTTTTGAAGC
GCTGCTATATGAGGACTTCGAGATCAAATATAATATGTTTCTTTCCATTCCTCGTGAGCCACTTA
TTTCTCCGAAACAAGAGATCAAAGTGATTTTCCTCCTTTTTCCCAATAAGTCGACGGCATTACAC
CATTGGGATACTTCGAATAAACTAGAGTACATATAGGATACACCGGTGCTAAAACCTTTTCTCAA
GATATCCTCCAAACTGTTGGGGTCGTTGCTCCGGATGTTGTTCCCCCGGTTTGAAACCAGTTGGT
TCCGTAGTTTTAGAATTCTGCTGATCCCAAGTACTCCATCTCCATCATTGCATATGGGAATATAG
AAAGTAAAGAGGAAAAGGCATGACCAGAAGAATTGTGTGAAATAAGTGAATTTATCCAGTTGAGG
CATGATTGATTGAGAAAAAATTCTTCCCTCCAGACAGACGGCCTG
Right flanking sequence: Indices 84912 -- 85411
CAACGAAAAGCATGGGAAAAAGAAAGATGCACCAAAGAAGATCAAGAGGGATGATCCCAGTTATA
AAAAGAGATCCGAGTTTCGAATCGCTTTGATAACCCGGCGGTAAGGAACGCTTTGCCGTGTACCC
GAATTGAGAATTGCGGTTAGATGATTGACATAAGTGTCTTTACTAAGCGCCTCCCCAAAAGGGTA
GAAAATCAAGCCGCGGATCTGATGTCTTTTTTCAAAGACAACTTGAGGATCGTACCCATCTTCCA
CAAGTGCGGCTTCTATGTGTTTTTCGATGGGCACTTGTCTGCCAACGACAGACTCTAGGGTCCCT
TCGGTATAAGTCTTCCCCCACAAATTGGTCCGCAATCGACCATATAGCTCTGCTCTTCGGGCGTT
CTCCTCCATAAGTGGAGGCTCCAGCTCGGGAATCACAGGCTGCTGATTCACGCTAGCTTCGCTGG
ATTCACCCGAAGATGGCATCGGTTCCAACAAGACACGTTCCTCGA
Found at i:218224 original size:25 final size:24
Alignment explanation
Indices: 218182--218228 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 24
218172 TGTAAGAACT
218182 CGACCGAAAGGGAGAGGAGTGAAG
1 CGACCGAAAGGGAGAGGAGTGAAG
218206 CGACCGAATAGGGCA-AGGAGTGA
1 CGACCGAA-AGGG-AGAGGAGTGA
218229 CAGCTAGCGG
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
24 8 0.38
25 12 0.57
26 1 0.05
ACGTcount: A:0.36, C:0.15, G:0.43, T:0.06
Consensus pattern (24 bp):
CGACCGAAAGGGAGAGGAGTGAAG
Left flanking sequence: Indices 217682 -- 218181
AGATAGGAACTCCTATCTGTAGGGCGGGCTTTCAAGACAGAGATGCACTACTCCATCTGGGAAGG
GCTTTCCCTCGTGGGGAAAGAGAAGAATCCCTTATTTAAAGGTAAGGACTGAAGGGAATAAAAAA
TCAATAGAAAAAATCCCTTCCCGGCGGACGGGACTCTACGTCTGGGTCTTATTCCATCTTAAACT
CGGATTAGGAAGAGTGCCCTTGAACTACAGATCAATCATAATAAACAATACAAAACAAAAAAAGA
AATGGCCAAGAAAAAAAGGCAAGGGGGAGATAGGGAAGAGGAGATTAAGGATAGTCACTCCGCTC
CATAGATAGTGAACACAGATTCTTGTTTCATTTTCAAGGGTCGAAAACGCGGGCTGCTGGTGGGG
CTGTGCCCATTCTTTCTCCCTCTTCTTCCGCTTTACAACCAGAATAAGGAACCTTAGAATTCACC
CTACCTGTCGATGAAAAAATAGGATTTGAGAGGTTTGTAAGAACT
Right flanking sequence: Indices 218229 -- 218728
CAGCTAGCGGATCAGAAAGATTTTTATGGAATACTCCTGCCCGATCAACCAATCCCCTATTTTAG
TTTAGGGACATCTCTTTGTTAGGTAGGGCCAGGGATCACTAATTAGTCGAATGAGCCCATCCCTC
TTCTGGCCTATCATTTATTGGTCGATCCGGCTGGCGGCTCCTGCATCTCCAGCGTCTCCATGGGG
GCCCCGTCATACAAGTTTGTTGCTAGGAGTCCCTATAGTCGAATCTATAATCAATAGAAGTCCCA
ATAGAAGTTTACTGACCTGGCTCTTCAATCGACGATCTACTGCTCCCTCTTAGTTGCAGATGCCC
ATGCTTTGATTCGAAAGCCCTAGCCAGTGATGAATCCCCAGGAAGAGAGGACTATTTTTCTTCCT
CTCCTTTCAGTCGAGTTCTTACAAACCTCCTCCCTTCAGTCCAGTTTGAACCCGTCCCAGCAACG
AACACCTTCCTACTGCAAGGTGAGGCTCTGCCCTTTCATAAAACG
Found at i:227330 original size:21 final size:21
Alignment explanation
Indices: 227304--227345 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
227294 GTAAGCCATT
227304 TGAAGTAGACA-GGGAATTGGA
1 TGAAGTAGACATGGG-ATTGGA
227325 TGAAGTAGACATGGGATTGGA
1 TGAAGTAGACATGGGATTGGA
227346 CAGCGGCAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.36, C:0.05, G:0.38, T:0.21
Consensus pattern (21 bp):
TGAAGTAGACATGGGATTGGA
Left flanking sequence: Indices 226804 -- 227303
GAATACTTACTTCGAAAGTGCTCTTAATCACTTCTTTCTTGGCCTTCTCTTCAATCCAATAGCAA
GAGAAGGTAGAGGAAGACAAACCTTATGTCAAAGCTTCATGCTTACTTTTTTACCCGTATTCCTA
CATGCCTGATCTTAATGCTTGCTTGGAGAGCGCAAATCCTTACGCGGTAAACCAATAGCAGCGGA
TTCAGTCCTTTCCTTCTTTCTTACTTTCATGGGTTGGTTTGGCCTCTTTCCTTCCTTTGAAAGAG
ATCCCAGGTGCAGTGCCTATTCACTCTGAATCGGATCTTGCACTTTCAGACCGGTCCTTTTAGCG
CTTAGTTAGTCTAGTCTTTGAGCGAGATCCAATGACTCCGGTTCGTGATCTTCTATCTATAAGAT
AGACCAAAGTGGAATGCTGACTGACTGCGGAAGAAGCGGTTCTTTGCAAGAATGCCTTTCGGGAT
TCGAGGAAAATAAAAAAGTGATGCTCCAAATCCGGGTAAGCCATT
Right flanking sequence: Indices 227346 -- 227845
CAGCGGCAAAGATAGGCCTGATCCAGGAATGGCGGGACCGCGCGGTTTGCATTAGAGGGGCCCGC
TTTCATCATCCTTACCCAGATCTCTTCTATTCTGTGATCTGGGATGATTAGATGAGGTTTCCATG
TGTATGTCTTCGGGAGCATCTTCTCCTGTGGGATCATAGCCAGTTTTTTTCACTGCGAGTGGTTA
TCTAAAGTAAAGGTAAACGAGGGTGACAGATCGATGAGGGCGCTCCCGCTTATCGGTTATACCCT
TCGACCCCTGTTTTAGCAGCTAGCGAAAAGGCTTCGTTCTGCTGTTCCCCGTGAGTGGTCTAAAT
CAGCTGCGGTAGTTAAGGTTTGGAACAAATGAGCCTAAGGGAACGAAGTTGTGAGCCTTTAGGTT
TGACCTAAATAAAATAGAACCGATAGGCGATACAAACCGTTGCGAACCATTGCGCAATCCCAGTG
AAATCAGTCAAATCAAGTTACATTCAAAAGGTAAAATCCCAAAAG
Found at i:388947 original size:17 final size:17
Alignment explanation
Indices: 388904--388949 Score: 58
Period size: 16 Copynumber: 2.8 Consensus size: 17
388894 GCAGTAAATG
*
388904 GAATAAACTAAGCAAGA
1 GAATAAACTAACCAAGA
*
388921 G-ATCAACTAACCAAGA
1 GAATAAACTAACCAAGA
*
388937 GAATGAACTAACC
1 GAATAAACTAACC
388950 CCAAGGGATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 14 0.56
17 11 0.44
ACGTcount: A:0.52, C:0.20, G:0.15, T:0.13
Consensus pattern (17 bp):
GAATAAACTAACCAAGA
Left flanking sequence: Indices 388404 -- 388903
AAGGCCAAGAGCAAGCAGGAGTAGTCATATCTGCCTAGAAGGATTCGATAAAGAGAATGTGAGTG
GGCAGGAGATCAATAGACACAGAAAGAGAAGACCAAAAGGAGCAGAAGGCACTCAGTTGTTTATG
TGAAATCAAGGAGCAGCAGGTTACACTTTTCCGAAGAGAGCTCAAAGCAATAAGATGAAAGATGA
GAAATGCTAGTAGATGAAAGATGGGATGAGATGCTAGCCTTAGCGCAGAAGATCAATCATTGAGC
CTTAGGCCACTACCGAGCAGCAATGGAGGATCATAACACTTGAGAGATGATCCCTACTTGAAAAG
GCGGAGACAATACCTCTTGTTTTGTTGCGACAAATCGAGTTTCAAAAGCCCATTTATCCATCACA
TTTTCAGGCACACCAGTCAAAGAGCCATCGGACCCATGAAAGTCCCCTTTTTTAATATACACAGC
CTTTGCCAGGATGTCTTTCATCAAGCAAAAGAGGGGCAGTAAATG
Right flanking sequence: Indices 388950 -- 389449
CCAAGGGATGATCTCGGATTGAAATCCAAGGCATGGTCCCGCCCCAGGAAAAAAAAGAATTCCGA
AAACCCCACTAAAAAGAGCGATTGAGAGTGGATTTCAGGTTCGATAGTGTCGAGAAGGTATTAGC
CACCGGTGACCGTACTTTCGTAAAAGCACCATTGGGCGGTGCTTCCTCTCTTTTTTCTGGAACCT
CGAACAAAAAATCGATCCCGCCATCAGCTCGACTAAGAGTTCCGAATCGAAAAAGTAAACTGAAC
TTGACGGCCGAAAAAAACCGGTTTCTTAAGGGGGCGTAGCGCTTGCTTACTTTTTAGAGTAAGGA
AGAAAAGACAAGCAAAGTAAAGACCAGCGACACTTCCTCTTCCGGTCCGGAGGCTTAATCTTATA
GTTCTCCCTCTTATCTTCTGCTTACTATTGAAGTGGTTTTTCAACCGTTGCCTCGACTTGGTTAA
ATTGCATTTGTATTCGCTCAAATTCCGGCTGAATCCTCTGCCGGT
Done.