Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_042758
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 1101768
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Found at i:2336 original size:18 final size:18
Alignment explanation
Indices: 2313--2348 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
2303 AAGCAGAAAG
*
2313 CCAAGCAAGTAAGGCAGA
1 CCAAGCAACTAAGGCAGA
*
2331 CCAAGCTACTAAGGCAGA
1 CCAAGCAACTAAGGCAGA
2349 GCAGACTAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.25, G:0.25, T:0.08
Consensus pattern (18 bp):
CCAAGCAACTAAGGCAGA
Left flanking sequence: Indices 1813 -- 2312
AAAGGAAAGAAAGCCCTAACTATTAGTCGGAAAGAAGACAGCACCAAGTAAAGCACATAGTTAAG
TACGGACACTAAAGCCGTTTCACCCCTATCTCTTAAAGGCTTCTTTCGAGGCGTTTCACTTCCTT
GAATTGGCTTAAGGGCGGTTCCTCAGTTCTATCTTTTGATAAAGGTAATGGATTGTCAACAGAGG
AAGAGAGTCGAAAGCTGCAGTGTTAGTGTTCTCCTTTATTCGTTCATACTAGTCTGGTATTCGGC
TAGCGTAACTGGCGAAGCAAGGGATTAGCTAGAAGGAAGGTCTTTAGTGCCAGTAGTCTAAAAGC
GGAAAGCAAGGCAACTAAGAAAGCAAAGCAGGAAAGGAAGCTCAAACATGCCAAAAGCTGAAAGC
CAAGCATTAGTGTCAGTAGCATTACAGTTAAAAGCAAGGCAGGCAAGTCAGCTCAAACATGCACT
AATGCCAAAAGCGGAAAGCCAAGACTCACAGCTAAAAGCAGAAAG
Right flanking sequence: Indices 2349 -- 2848
GCAGACTAGGAAGGCTAGCTACTAAGCTCATTAAAGCAGTCAAGTCAGGCTAGCTAGTCTAGTAA
GGTCAAACATGCCAGTATTAGCTGACAAAAGAACAGACAAAAGAATCCGAATTCAAGGGCTAGGC
TAGTAAGAAGAAGAGAGGTATTTATCTATCACTTGAGAATCGATTAAGGCATGAAGACGTTCCTC
CCCTTACTCTAAAGCCCCTTACTAAAGGTTCGCTCCACTTCCCTTAACGGACTTACAGATAAATA
AGGAAGCCCCCTTACTATACAAGTTTTATGCTTAAGGAAAGGAACAGGATTCTAACTAGCCAGCT
ATAGCCAATTACTGACCCCCCTAAGCCCCTTTCCTTTGGGGAACTAATGAAACAGCGCTCCGCCC
CTGACTCGTATGCCCCTTTAGGCGGGGTACCTTCGCTCCACTTCCTCATTCAGGCTGATATGAAC
TGAAAAAGAAAAAGAAGGTCATCTTTTTTCATTAAAAAAGCTTGC
Found at i:35248 original size:28 final size:28
Alignment explanation
Indices: 35174--35255 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
35164 GAACCGAACC
* *
35174 TCGTATACAGCGACAGCTACGTATCGGCT
1 TCGTATACAGC-AAAGCTTCGTATCGGCT
***
35203 TCGTATACAGCTTGGCTTCGTATCGGCT
1 TCGTATACAGCAAAGCTTCGTATCGGCT
35231 TCGTATACAGCAAAGCTTCGGTATC
1 TCGTATACAGCAAAGCTTC-GTATC
35256 CACTACACTG
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
28 29 0.64
29 16 0.36
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (28 bp):
TCGTATACAGCAAAGCTTCGTATCGGCT
Left flanking sequence: Indices 34674 -- 35173
CGATCGCCCCACATATCGACGATTTGTTAATGCCTTATCCTCCGCCCATCTAGTTGAGCAATTGA
GGGATAGGAGACAGGGATAGAAGAGTCGAAGGGATGGATAATCTTTCCTCTCCTGGATTGGATCG
TTGATGCATATGTTACGATGCCTTCGGATGAAGGAGGGTCGGGCGGACGGCACAAGAAGAGCGAC
CCGCAAACGGAAAGGAAAGAATAGTATGAGGGGCAGCGCATCGGCTCACCGATAAGAACCACAAC
TCTTCTTCTCGTCCAGCCGGGGAAGGGGTCGCCCTCTAGGCCCCGCGTTGGGGCCTCGAGCAGGC
TTGTAGTCACTCTCTCGTACCCTGATCCGTATGTACGGCTTTCATAGTACGTCCCGTCCCCCTCC
TCGCTTCGTATCGGCACAGCTTCGTAGACAGCTTGGCCTCGTATAGTATACAGCTGTGGCCTAGT
ACGCACCTCGTATACAGCTGCATGCAGCCTAGTCCGAACCGAACC
Right flanking sequence: Indices 35256 -- 35755
CACTACACTGCCTGAAGTCTACTCTAGTGTACTCTTTATCAGGTAATAAAATCAATATCTTAATA
AAAGAAGTCTGCTACCAAGAGAGCTATTCCTACGGCCTTCTTCTCCTATCGCATCAAGGAGGTCT
GCCCATTGACTTCCTTACCTCACTGAAAGGGCTTCCCCAAGGGTTGTTCATAAAGGGGAGTGCAG
CGAAGAGCTGAGGAGTTTAAACAAAGAGTAGCTCGGCCTCTTGTGACAGACAGCCTTAGAAGCGG
ATTCCTCTCCTAGTAGCTAAGCTAGGTAGTTTGTTGTTAGAATCTCTATCCTAGTAGTAGGAAGC
TTTGCAGCGGCAACCGATAACAACAACCGATGATATATCCGCTGTTGTTTTAGGAGCTCTTGTGG
GAATACCTGAGGCAAGTAGCTAAGCGAATAGGGCTCTTTTGGGCTTATCCCCCTAGGAAGTATAT
AATTAATATTTCTCCCGCTTGTAGTATGTAGCTTTACTTCTTTAA
Found at i:68755 original size:17 final size:18
Alignment explanation
Indices: 68733--68766 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
68723 AGCGGCCTAA
68733 GAGTGAGCTTC-TGAGTG
1 GAGTGAGCTTCTTGAGTG
*
68750 GAGTGAGTTTCTTGAGT
1 GAGTGAGCTTCTTGAGT
68767 CTGAGAGCCC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.18, C:0.09, G:0.38, T:0.35
Consensus pattern (18 bp):
GAGTGAGCTTCTTGAGTG
Left flanking sequence: Indices 68233 -- 68732
GTAAGGCCGTCGACTTTTTGGGAAAACGGAGGAAAATCACTTCGATCTCTTGTTTCGGAGAAATC
AGTGGCTCACGAGGAATGGAAAGAAACATTCTTTATCTGATCTCGAAGTCCTCATATAGCACTTC
TTCCAGTCTTGGATGGGGGATCCCTTGTAGGAATGACATAATGCTTATCCATGTTCTACACGGCC
AAGGAAGCATCGTTTTTTAATTTGACGGTCGTTCGGAAGAGATTCTTTATCGATAAGAATAGTGG
AATGGAAGGCACTACAAGAAGGATATACTCCTTTTCTTTTCAAATTTCGCCCTGCGCCCTGCGAA
GCGTGTCACGAGATATGGGGCGTTCAGAAAGGTTCTCGAGATTATCAATCGTCCAGGCGTGCGGG
AAGGGAGCGAGACCAAGCCGAGCCACTAGGAGAGGTAAGCCCTTCCCATTCTACGCGTGTCAAGT
GGATTCATGCAGCCTCATTCTTTCTTTTGCTGGAGAGCGGCCTAA
Right flanking sequence: Indices 68767 -- 69266
CTGAGAGCCCGAGCCCAGTTTCGGGCGTCTTTCCCGGGCCTGGACTTGTATGTGGCCTTTGCTTG
AGTTGTAGTCGATAGTCTCTTTCGACTAAGTGCATTAGGTGCTCTTCTCGATTGGCAATCGATAG
GTTCTCAAGTCTTCTTTCTCTCTATCTGAAGTGTGTAGTTGAATAGCTCTTCTAGGTCCGGTTCC
ACTCTTTCCCTTCCGGGAAGGGATCCGTCCCTTTAACCCAGCCCTTCAGGCCAGGAGGAAGTCAG
TCCCTAAACCCGTTCCATGCCCTTCCCTTTCGGTCAGTCACATGAATGATTTGATTAAAGACCCT
TTCCTTGTCGGTCATTCAGGTACCCTTCCTTCCCTGCCCTTTCGGTTGGTACTTGCCCTTGCTTT
CCCTGTCGGTCCGGTGAGTAGCGAGTGCAGAGAGGGATTGCAACGGGGGTTTACCCAACGGAGTA
AGCAAGCAAGCCCTCTTTTCGGTGCTGGATTTTACCATAAAGAAA
Found at i:70914 original size:35 final size:35
Alignment explanation
Indices: 70868--70962 Score: 190
Period size: 35 Copynumber: 2.7 Consensus size: 35
70858 CCCCTGCCCT
70868 CAAGCCCCGAAGCGCTAGCCGAGCAAGCGGAAAGG
1 CAAGCCCCGAAGCGCTAGCCGAGCAAGCGGAAAGG
70903 CAAGCCCCGAAGCGCTAGCCGAGCAAGCGGAAAGG
1 CAAGCCCCGAAGCGCTAGCCGAGCAAGCGGAAAGG
70938 CAAGCCCCGAAGCGCTAGCCGAGCA
1 CAAGCCCCGAAGCGCTAGCCGAGCA
70963 GAAAGGGAAA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 60 1.00
ACGTcount: A:0.31, C:0.34, G:0.33, T:0.03
Consensus pattern (35 bp):
CAAGCCCCGAAGCGCTAGCCGAGCAAGCGGAAAGG
Left flanking sequence: Indices 70368 -- 70867
TCCCTTCCTCTCCATGGCCTTCATTCATCCTTCTCTCCATCCATCGTCTATTAAAGATATTCTCC
GCCTCACCTTCCTTCCTATCCATCCCGCCTGCATCGCTCTTCCCTTCCATCGTCTTCCCCTCAGC
TTCCCTCCTTTTCACTACCACCTAATTGATCCCTCCGGTCTTCTGAGGCACCCTAAGACCAAGAA
TTCGCTGCTGTAGTTGTTTATTCTTCTGTGGACGTCCCCATACCTTTCTACCTTTACCCGTCACG
TTCCAGAGACCTTCGTCCTGAAGGTCCTTAGGTCTCTAGAACGAGTAGGATTTGACCAACAAATC
GACTAGTGGGAGTCGGGCTGTATGTTTCCTAAAGGGAGGTGGGGTATTCCCCCTTTTTTGAAAGA
TGTAGTCCAAAACAAACTATCAGGGTAGTCGGAGCCGGCTGGATGGAATCCTTTTTCTATTTGCA
ATGCCGGACCGAAACGGCTTTGTAGCGAGACAAAACCCCTGCCCT
Right flanking sequence: Indices 70963 -- 71462
GAAAGGGAAACCGAGCGGTAAAGGCAAGAGCAAGATGCGCAGATGCACAAGTAGAGCGTTTGAGA
TAATAGGTGTCTCATCGGAGCAAGGCGCGTAGCCAAGTCTATTGAGCAAGGCGCGTAGCCAAGTC
TATTGAGCAAGACACATAGTCAAGTCTAGCAGAACGAGAAGATACCCCGTAGGTCAGCCTATACA
CCTCGGATATCAAACAATTAGAGTCATTGCTCCATGGCGACGTCAGGAGCAAATCAAAAGGAGGA
ACGAAGGGCTTCGTCGAGAGCCTAGACGTCGGTAGTGTAACGACACCGTGGGCGCCACTCCTCTT
ATTGGCTGCCGTGATGGGGATGTACACTGCAGTCGAAGCAACGTATAATAAGCGTCGATCCATTC
GCGATACACCTTCGATCTGTATTAGCTATTAGCTTCTGAAACTATCTTGCTTTATGGGTTAAGAT
CTCAGTGGTCTGGCGTCAATCTTTGCTTGCCCAGGTTCCGCTCCT
Found at i:71074 original size:26 final size:26
Alignment explanation
Indices: 71045--71103 Score: 118
Period size: 26 Copynumber: 2.3 Consensus size: 26
71035 TGTCTCATCG
71045 GAGCAAGGCGCGTAGCCAAGTCTATT
1 GAGCAAGGCGCGTAGCCAAGTCTATT
71071 GAGCAAGGCGCGTAGCCAAGTCTATT
1 GAGCAAGGCGCGTAGCCAAGTCTATT
71097 GAGCAAG
1 GAGCAAG
71104 ACACATAGTC
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.29, C:0.22, G:0.32, T:0.17
Consensus pattern (26 bp):
GAGCAAGGCGCGTAGCCAAGTCTATT
Left flanking sequence: Indices 70545 -- 71044
GCACCCTAAGACCAAGAATTCGCTGCTGTAGTTGTTTATTCTTCTGTGGACGTCCCCATACCTTT
CTACCTTTACCCGTCACGTTCCAGAGACCTTCGTCCTGAAGGTCCTTAGGTCTCTAGAACGAGTA
GGATTTGACCAACAAATCGACTAGTGGGAGTCGGGCTGTATGTTTCCTAAAGGGAGGTGGGGTAT
TCCCCCTTTTTTGAAAGATGTAGTCCAAAACAAACTATCAGGGTAGTCGGAGCCGGCTGGATGGA
ATCCTTTTTCTATTTGCAATGCCGGACCGAAACGGCTTTGTAGCGAGACAAAACCCCTGCCCTCA
AGCCCCGAAGCGCTAGCCGAGCAAGCGGAAAGGCAAGCCCCGAAGCGCTAGCCGAGCAAGCGGAA
AGGCAAGCCCCGAAGCGCTAGCCGAGCAGAAAGGGAAACCGAGCGGTAAAGGCAAGAGCAAGATG
CGCAGATGCACAAGTAGAGCGTTTGAGATAATAGGTGTCTCATCG
Right flanking sequence: Indices 71104 -- 71603
ACACATAGTCAAGTCTAGCAGAACGAGAAGATACCCCGTAGGTCAGCCTATACACCTCGGATATC
AAACAATTAGAGTCATTGCTCCATGGCGACGTCAGGAGCAAATCAAAAGGAGGAACGAAGGGCTT
CGTCGAGAGCCTAGACGTCGGTAGTGTAACGACACCGTGGGCGCCACTCCTCTTATTGGCTGCCG
TGATGGGGATGTACACTGCAGTCGAAGCAACGTATAATAAGCGTCGATCCATTCGCGATACACCT
TCGATCTGTATTAGCTATTAGCTTCTGAAACTATCTTGCTTTATGGGTTAAGATCTCAGTGGTCT
GGCGTCAATCTTTGCTTGCCCAGGTTCCGCTCCTACTCCTGTGCTAGCTAGGCGATCCCTATTCC
GCTGCTATGCTCTGGAGTTGGTTCAGAGCCCCTACCTCTCTGGTCCCCTAGCCCTGAAGTCTGCG
CTTCCTTGTCCGGCGCTAAAGCGAGGAACGGGTGCGTAACACATT
Found at i:71116 original size:26 final size:26
Alignment explanation
Indices: 71057--71120 Score: 92
Period size: 26 Copynumber: 2.5 Consensus size: 26
71047 GCAAGGCGCG
* * *
71057 TAGCCAAGTCTATTGAGCAAGGCGCG
1 TAGCCAAGTCTATTGAGCAAGACACA
71083 TAGCCAAGTCTATTGAGCAAGACACA
1 TAGCCAAGTCTATTGAGCAAGACACA
*
71109 TAGTCAAGTCTA
1 TAGCCAAGTCTA
71121 GCAGAACGAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (26 bp):
TAGCCAAGTCTATTGAGCAAGACACA
Left flanking sequence: Indices 70557 -- 71056
CAAGAATTCGCTGCTGTAGTTGTTTATTCTTCTGTGGACGTCCCCATACCTTTCTACCTTTACCC
GTCACGTTCCAGAGACCTTCGTCCTGAAGGTCCTTAGGTCTCTAGAACGAGTAGGATTTGACCAA
CAAATCGACTAGTGGGAGTCGGGCTGTATGTTTCCTAAAGGGAGGTGGGGTATTCCCCCTTTTTT
GAAAGATGTAGTCCAAAACAAACTATCAGGGTAGTCGGAGCCGGCTGGATGGAATCCTTTTTCTA
TTTGCAATGCCGGACCGAAACGGCTTTGTAGCGAGACAAAACCCCTGCCCTCAAGCCCCGAAGCG
CTAGCCGAGCAAGCGGAAAGGCAAGCCCCGAAGCGCTAGCCGAGCAAGCGGAAAGGCAAGCCCCG
AAGCGCTAGCCGAGCAGAAAGGGAAACCGAGCGGTAAAGGCAAGAGCAAGATGCGCAGATGCACA
AGTAGAGCGTTTGAGATAATAGGTGTCTCATCGGAGCAAGGCGCG
Right flanking sequence: Indices 71121 -- 71620
GCAGAACGAGAAGATACCCCGTAGGTCAGCCTATACACCTCGGATATCAAACAATTAGAGTCATT
GCTCCATGGCGACGTCAGGAGCAAATCAAAAGGAGGAACGAAGGGCTTCGTCGAGAGCCTAGACG
TCGGTAGTGTAACGACACCGTGGGCGCCACTCCTCTTATTGGCTGCCGTGATGGGGATGTACACT
GCAGTCGAAGCAACGTATAATAAGCGTCGATCCATTCGCGATACACCTTCGATCTGTATTAGCTA
TTAGCTTCTGAAACTATCTTGCTTTATGGGTTAAGATCTCAGTGGTCTGGCGTCAATCTTTGCTT
GCCCAGGTTCCGCTCCTACTCCTGTGCTAGCTAGGCGATCCCTATTCCGCTGCTATGCTCTGGAG
TTGGTTCAGAGCCCCTACCTCTCTGGTCCCCTAGCCCTGAAGTCTGCGCTTCCTTGTCCGGCGCT
AAAGCGAGGAACGGGTGCGTAACACATTCTTGAGCTCTGAGTGCC
Found at i:71643 original size:17 final size:17
Alignment explanation
Indices: 71621--71659 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
71611 TCTGAGTGCC
71621 AGTCTTTAGGAGAGACT
1 AGTCTTTAGGAGAGACT
71638 AGTCTTTAGGAGAGACT
1 AGTCTTTAGGAGAGACT
71655 AGTCT
1 AGTCT
71660 CTATTGACTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (17 bp):
AGTCTTTAGGAGAGACT
Left flanking sequence: Indices 71121 -- 71620
GCAGAACGAGAAGATACCCCGTAGGTCAGCCTATACACCTCGGATATCAAACAATTAGAGTCATT
GCTCCATGGCGACGTCAGGAGCAAATCAAAAGGAGGAACGAAGGGCTTCGTCGAGAGCCTAGACG
TCGGTAGTGTAACGACACCGTGGGCGCCACTCCTCTTATTGGCTGCCGTGATGGGGATGTACACT
GCAGTCGAAGCAACGTATAATAAGCGTCGATCCATTCGCGATACACCTTCGATCTGTATTAGCTA
TTAGCTTCTGAAACTATCTTGCTTTATGGGTTAAGATCTCAGTGGTCTGGCGTCAATCTTTGCTT
GCCCAGGTTCCGCTCCTACTCCTGTGCTAGCTAGGCGATCCCTATTCCGCTGCTATGCTCTGGAG
TTGGTTCAGAGCCCCTACCTCTCTGGTCCCCTAGCCCTGAAGTCTGCGCTTCCTTGTCCGGCGCT
AAAGCGAGGAACGGGTGCGTAACACATTCTTGAGCTCTGAGTGCC
Right flanking sequence: Indices 71660 -- 72159
CTATTGACTGTAGGTCTTTCTAGCAGGAGAGACTAGTCTCTATTGACTGCTACGGCGATACTCGA
CAATGATAGTACCTATCTCTCCTAATGACTTTCGAATCTTGCCGTAGGCAAGCCGTAGGCGAGTA
GTACCTATATCTCCTAATGACTACGGCGATACTCGACAATACCTAGAGAGACCTTATTCTATTAT
TCGAGTATTCTGTAAAAGACCTATTATATTAGATTAGGGTTAGAAAAAGCAAAAGGAGAAGAGAA
AAGAGACGATGAAATGGGGAAAACTCAAGAAAGAAGTCATTCTATTCACAACATAAGTTTTATAC
ATAACAAAATCTTTGGTATTTACGTCCTTTACACTTAAAACATCAAAATTTCCTAGGCCTAGAAT
GAATGTATGGTACATTTGTTTAATATTCTCTAACACTCCCTCTCAAGTTGGTGCGTGAATGTCAA
TCATGCCCCACTTTACACTTCATTCATGAAAGCGGTCTCTTCCCA
Found at i:76152 original size:16 final size:16
Alignment explanation
Indices: 76123--76173 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
76113 CCACTTATAA
** *
76123 AGCTCTCTAGTCTTGC
1 AGCTCTCTCTTCTTGT
76139 AGCTCTCTCTTCTTGT
1 AGCTCTCTCTTCTTGT
*
76155 TGCTCT-TCTTCTTGT
1 AGCTCTCTCTTCTTGT
76170 AGCT
1 AGCT
76174 ACTGAGATGC
Statistics
Matches: 30, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 12 0.40
16 18 0.60
ACGTcount: A:0.08, C:0.29, G:0.16, T:0.47
Consensus pattern (16 bp):
AGCTCTCTCTTCTTGT
Left flanking sequence: Indices 75623 -- 76122
ATAAGCTGGACCAAGAACACAGCCTTAGAAAGAAAGAGCGGCTGGAAGAAAGGAAGTGGCCAGGA
GAAAGGGGCAGATTGATCAGCTGGATAAGAAACACAGCTTAAAGGAAACTGCTCATATAAATGAC
AATCCTGAATGATGAGCATCAAATGTGCAAAAGAGCAGAACCCATGGTATAGGTGTCCAAGAAGC
TGGACCAAACACAGCTCAAAGAAGATGAAAGAGGTGCCCCTTATGATGCTACGGAACTGCTCTCT
GTGCACTGCTTTCAGTGTACTGCTTTGCTCGCTCTATTGTTGGGTTAGGGAGGCTATGTCTTGAG
TTGGCTTAGCTCGCTCTTCTTGAAGCGATTCTTGTAGCTACCTCTGTCTTCTGTCTTCTTGTAGC
AACGGACCTAAAGACGCGGCACTCAGCGATCTACGGGCTTTACGGACCAAGGCCCTACGCCTGCG
AGGCTTAGCTACTCAGTGTGTCATGTGTGTACGTACCACTTATAA
Right flanking sequence: Indices 76174 -- 76673
ACTGAGATGCGCTACTCTTGAGTTGGGTTAGCTATCTGTTGCTCTGTATTGAGTTAGCTCTGTAG
TTCTGTCTTGCTTGAGCCCCTTCTATGCCTATGCAACAGAGAAGAGAACAGCAACTACAGTGCTA
TGCCCTACCTGAGAGACAACAGCTATGCCCTACCACTGCTACTGAACTGCCTCTACTACAGCTAG
GAAAGTAAGAACAGAAACTGGTAGCTACTACCTACCGCTAAGAGAGGTAGCTACATTCGGGAAGA
AGGAACTCGCAAGGAAACCTTCAAAGAATCACTCCTTGTAAAGGTGTTGATAATCGAAAGAAAGA
AGCTACTCAACTACCAAAACTCTGTTGTAGATAGAGTTGTAGATCGGTCTCGGTTACGATCGATA
TATATCTAAGTGCCAGGACTCGACCGCTTAGGGCGACGGAAAAGAAAGAAGAAACTAGAAAACCT
AAAGGGAACTGCTCCGAGATACGGCTATTACTATACGTCGTACTA
Found at i:76166 original size:15 final size:16
Alignment explanation
Indices: 76140--76169 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
76130 TAGTCTTGCA
76140 GCTCTCTCTTCTTGTT
1 GCTCTCTCTTCTTGTT
76156 GCTCT-TCTTCTTGT
1 GCTCTCTCTTCTTGT
76170 AGCTACTGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.00, C:0.30, G:0.13, T:0.57
Consensus pattern (16 bp):
GCTCTCTCTTCTTGTT
Left flanking sequence: Indices 75640 -- 76139
CACAGCCTTAGAAAGAAAGAGCGGCTGGAAGAAAGGAAGTGGCCAGGAGAAAGGGGCAGATTGAT
CAGCTGGATAAGAAACACAGCTTAAAGGAAACTGCTCATATAAATGACAATCCTGAATGATGAGC
ATCAAATGTGCAAAAGAGCAGAACCCATGGTATAGGTGTCCAAGAAGCTGGACCAAACACAGCTC
AAAGAAGATGAAAGAGGTGCCCCTTATGATGCTACGGAACTGCTCTCTGTGCACTGCTTTCAGTG
TACTGCTTTGCTCGCTCTATTGTTGGGTTAGGGAGGCTATGTCTTGAGTTGGCTTAGCTCGCTCT
TCTTGAAGCGATTCTTGTAGCTACCTCTGTCTTCTGTCTTCTTGTAGCAACGGACCTAAAGACGC
GGCACTCAGCGATCTACGGGCTTTACGGACCAAGGCCCTACGCCTGCGAGGCTTAGCTACTCAGT
GTGTCATGTGTGTACGTACCACTTATAAAGCTCTCTAGTCTTGCA
Right flanking sequence: Indices 76170 -- 76669
AGCTACTGAGATGCGCTACTCTTGAGTTGGGTTAGCTATCTGTTGCTCTGTATTGAGTTAGCTCT
GTAGTTCTGTCTTGCTTGAGCCCCTTCTATGCCTATGCAACAGAGAAGAGAACAGCAACTACAGT
GCTATGCCCTACCTGAGAGACAACAGCTATGCCCTACCACTGCTACTGAACTGCCTCTACTACAG
CTAGGAAAGTAAGAACAGAAACTGGTAGCTACTACCTACCGCTAAGAGAGGTAGCTACATTCGGG
AAGAAGGAACTCGCAAGGAAACCTTCAAAGAATCACTCCTTGTAAAGGTGTTGATAATCGAAAGA
AAGAAGCTACTCAACTACCAAAACTCTGTTGTAGATAGAGTTGTAGATCGGTCTCGGTTACGATC
GATATATATCTAAGTGCCAGGACTCGACCGCTTAGGGCGACGGAAAAGAAAGAAGAAACTAGAAA
ACCTAAAGGGAACTGCTCCGAGATACGGCTATTACTATACGTCGT
Found at i:76993 original size:24 final size:24
Alignment explanation
Indices: 76960--77008 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
76950 TACCTACTTG
*
76960 TGCTAGGAGGAAACCTATACCTAC
1 TGCTAGGAGGAAACCCATACCTAC
* **
76984 TGCTATGAGGCTACCCATACCTAC
1 TGCTAGGAGGAAACCCATACCTAC
77008 T
1 T
77009 TGTCCTATGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (24 bp):
TGCTAGGAGGAAACCCATACCTAC
Left flanking sequence: Indices 76460 -- 76959
AATCACTCCTTGTAAAGGTGTTGATAATCGAAAGAAAGAAGCTACTCAACTACCAAAACTCTGTT
GTAGATAGAGTTGTAGATCGGTCTCGGTTACGATCGATATATATCTAAGTGCCAGGACTCGACCG
CTTAGGGCGACGGAAAAGAAAGAAGAAACTAGAAAACCTAAAGGGAACTGCTCCGAGATACGGCT
ATTACTATACGTCGTACTAAGAGCAGTTCCTAGTAAGCGATTGACTGCTATGTGTTATGCTTAAG
ACAAGGGTAGGGAAAGTAAGCCAACCGCGTAGCTGTATTGTAGCTAGCTCTAGCTAACAACCTCA
AGCTATCTGGAATTAACCGCGGGGGATATAGAAGTTTTCCAGAGGGAGGGCGCTAAAGACGTCTG
TCAAGGAAGCGTTGACCTTGCGTATACAGCTCCTCGGTAGCTACGAATAAAAGCACTAGACAGCT
ACTACTTAGCTACTACTAAAAGAACTACTTTCCGCTACCTACTTG
Right flanking sequence: Indices 77009 -- 77508
TGTCCTATGAGCTACCTAGAGCTAGGATAGGAACTACTAGAGACAGGATAGGACAACTAACAGAG
CTAGGATAGAAAATCGCAGGGATAGGAACAACTACGTTGAGCTATGAACTACCTATAGCTAGGAT
AGTGATACAACTGCTATAATATATGCTATAGAGCTGCTATACAAGCAAGACAACTCCCATAGCAT
ACAAGCCATACACAACTCCTAAACGCAGCTATCAAAGCGATACAACAGCAATAGAGCTGCTATAC
AAGCGAGACAACTCCACTCCTATAGAGCTGCTATAGCGATACACTTGCTAAAGTGAGACAGCTGT
ACTGACCTGCTCTAAAAAGAGTTTGTAGCTGTACGTACTGACCTGCTCTACTTGTCGAGAAGAAA
GAACTCGCAAGGCTCAGAAGAACAACTACTTGCTAGTTGTTGCTAATCGACAGCCCTCAGAAGAA
CTCCTTCTTGAAGGGTAAGGGTAAGCTACTCTATCTACAGACCTA
Found at i:77048 original size:21 final size:23
Alignment explanation
Indices: 77024--77082 Score: 72
Period size: 23 Copynumber: 2.7 Consensus size: 23
77014 TATGAGCTAC
77024 CTAGAGCTAGGATAGG-AACT-A
1 CTAGAGCTAGGATAGGAAACTAA
77045 CTAGAGAC-AGGATAGGACAACTAA
1 CTAGAG-CTAGGATAGGA-AACTAA
77069 C-AGAGCTAGGATAG
1 CTAGAGCTAGGATAG
77083 AAAATCGCAG
Statistics
Matches: 33, Mismatches: 0, Indels: 8
0.80 0.00 0.20
Matches are distributed among these distances:
21 14 0.42
22 2 0.06
23 15 0.45
24 2 0.06
ACGTcount: A:0.41, C:0.15, G:0.29, T:0.15
Consensus pattern (23 bp):
CTAGAGCTAGGATAGGAAACTAA
Left flanking sequence: Indices 76524 -- 77023
TGTAGATAGAGTTGTAGATCGGTCTCGGTTACGATCGATATATATCTAAGTGCCAGGACTCGACC
GCTTAGGGCGACGGAAAAGAAAGAAGAAACTAGAAAACCTAAAGGGAACTGCTCCGAGATACGGC
TATTACTATACGTCGTACTAAGAGCAGTTCCTAGTAAGCGATTGACTGCTATGTGTTATGCTTAA
GACAAGGGTAGGGAAAGTAAGCCAACCGCGTAGCTGTATTGTAGCTAGCTCTAGCTAACAACCTC
AAGCTATCTGGAATTAACCGCGGGGGATATAGAAGTTTTCCAGAGGGAGGGCGCTAAAGACGTCT
GTCAAGGAAGCGTTGACCTTGCGTATACAGCTCCTCGGTAGCTACGAATAAAAGCACTAGACAGC
TACTACTTAGCTACTACTAAAAGAACTACTTTCCGCTACCTACTTGTGCTAGGAGGAAACCTATA
CCTACTGCTATGAGGCTACCCATACCTACTTGTCCTATGAGCTAC
Right flanking sequence: Indices 77083 -- 77582
AAAATCGCAGGGATAGGAACAACTACGTTGAGCTATGAACTACCTATAGCTAGGATAGTGATACA
ACTGCTATAATATATGCTATAGAGCTGCTATACAAGCAAGACAACTCCCATAGCATACAAGCCAT
ACACAACTCCTAAACGCAGCTATCAAAGCGATACAACAGCAATAGAGCTGCTATACAAGCGAGAC
AACTCCACTCCTATAGAGCTGCTATAGCGATACACTTGCTAAAGTGAGACAGCTGTACTGACCTG
CTCTAAAAAGAGTTTGTAGCTGTACGTACTGACCTGCTCTACTTGTCGAGAAGAAAGAACTCGCA
AGGCTCAGAAGAACAACTACTTGCTAGTTGTTGCTAATCGACAGCCCTCAGAAGAACTCCTTCTT
GAAGGGTAAGGGTAAGCTACTCTATCTACAGACCTACTATCCACAGACCTACTATAGGGTTGGTT
AGCTACTCTACAGACAGACCTACTCCAGGGTAGGCTACTCTACCT
Found at i:77518 original size:15 final size:15
Alignment explanation
Indices: 77494--77527 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
77484 GTAAGCTACT
*
77494 CTATCTACAGACCTA
1 CTATCCACAGACCTA
77509 CTATCCACAGACCTA
1 CTATCCACAGACCTA
77524 CTAT
1 CTAT
77528 AGGGTTGGTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.32, C:0.35, G:0.06, T:0.26
Consensus pattern (15 bp):
CTATCCACAGACCTA
Left flanking sequence: Indices 76994 -- 77493
CTACCCATACCTACTTGTCCTATGAGCTACCTAGAGCTAGGATAGGAACTACTAGAGACAGGATA
GGACAACTAACAGAGCTAGGATAGAAAATCGCAGGGATAGGAACAACTACGTTGAGCTATGAACT
ACCTATAGCTAGGATAGTGATACAACTGCTATAATATATGCTATAGAGCTGCTATACAAGCAAGA
CAACTCCCATAGCATACAAGCCATACACAACTCCTAAACGCAGCTATCAAAGCGATACAACAGCA
ATAGAGCTGCTATACAAGCGAGACAACTCCACTCCTATAGAGCTGCTATAGCGATACACTTGCTA
AAGTGAGACAGCTGTACTGACCTGCTCTAAAAAGAGTTTGTAGCTGTACGTACTGACCTGCTCTA
CTTGTCGAGAAGAAAGAACTCGCAAGGCTCAGAAGAACAACTACTTGCTAGTTGTTGCTAATCGA
CAGCCCTCAGAAGAACTCCTTCTTGAAGGGTAAGGGTAAGCTACT
Right flanking sequence: Indices 77528 -- 78027
AGGGTTGGTTAGCTACTCTACAGACAGACCTACTCCAGGGTAGGCTACTCTACCTACTAGAAGAC
AAACCGGAATATCTAGTAGGTGTCAGTGAGCAACAAGCTCAAAGAGAGCCTTAGAAGCTAGTCTT
TGCAAGGTGTTGCTTATCGACAATCCCACTAAGGCACCTACCTAACCTAACTGTAAGCCAACTGC
GAAGGCACCTACCTATACCTATAAGCCAACCAACTAATAACAAAACTAAAGGAACTCTCTCCTGG
AGCTCAACGCTTAGAAGTTAAGAAGTCAAGCACCTTCTCTGGAGGAACTCCTCTTGACTTGAGGA
ACTATTCTTGAGCCTAGCTAGCTCTACTTGAGGAATAACTCCTAGCTTTGGTTGCTACTATTTGT
GCTGTTCACTCGCTGGATCAAACTCTTCTTTTTAGCTATACTACACTATAGTATACTATACACGC
CCTATACTAGACTATAGGCCGTCCACCGGATCATTCCATTGGGAG
Found at i:151223 original size:18 final size:18
Alignment explanation
Indices: 151200--151235 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
151190 GTCTCTTTTT
151200 CATAACTTAGATTAGCGA
1 CATAACTTAGATTAGCGA
*
151218 CATAACTTATATTAGCGA
1 CATAACTTAGATTAGCGA
151236 ATAGCTTTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.39, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
CATAACTTAGATTAGCGA
Left flanking sequence: Indices 150700 -- 151199
TTGCATGTTCACCAAGCTCATCGAAATAAATGAGATCGATTTGACTGGAGAAATTCCGTTAAGAT
CATGGGTAGCCTGGTAACACAATACCTTGGATCACGGGTAGCACGCCACAATGCCAGTTAGCTTT
TTTGCTTGTGAATCTTAACCGGTGCTTCTTCCCGAGTTACGTGCAAGAGGAATTGTTCCTTATTC
AGGATTAATGAGCGTACGAATCGGCCGACTCATTTTGGTAAAAATCGGCAGTTCCAGATTACTCG
AGTAACATATGCCGATAATAAATGGACATAAAGGCAGTCACTAGTTGCGGTTTCGAAAGAGGAAA
GAAGAAGACAGGTGGTGGCCCGCGTAACCGAATCCAAATCTATAAGGACGGTTACTTATAGAAAT
AGTATAAATAGTAGTCTTTGTTTTGTATTGTATTGTACATCCTTCGATCAATTCCCCAAAGCGGA
TGAATGAAATACTCGCACAGCGAGCTTGACTTTGAGTCTCTTTTT
Right flanking sequence: Indices 151236 -- 151735
ATAGCTTTTAGAACTCTTCGAACAAAAACAGGTGAGGCTCTCCCACTCGTTTTCGTCCGAATATT
TGTTCTCTCGAAGAACCTCACCGTCATCGAGTTGGCACGCCAAATTAGACCCCTTCATAGTAATA
TCGGAATTGGATTTCCGAAAGAGAAAGAAGGACCCCGACGGCCCGGATCGTCAGAACAATCGCCT
GATCAAATCACATTCGAGGTGGCCGTACAGGCATTCAGCTTCACTATCCCTCGAGGTCGAGAGGC
GTCTTCGGCCTGTGTCGGCGCGGTCGGAGTGTTTTTCTTTACCAACAACTAGACTATACGTATAA
TCTGTATAATAAGTAGAATCTTTTTTCTATGGATTTTCTTTATTCCTTTTAAAATAAAGAAATAA
AGAACCCACCATGATATCTACCCCCACTTATTATTCCCGGGGGCTCGGGATTTTATCAAGAAAAC
AGAACTATAGGAAATTCGAGTGCTTCCTCAGAAAACCTTTCCGAA
Found at i:152462 original size:21 final size:21
Alignment explanation
Indices: 152436--152476 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
152426 AGAAGGTTAG
152436 CTTGACCCGAGATGACCTACC
1 CTTGACCCGAGATGACCTACC
** *
152457 CTTGACTTGAGATGATCTAC
1 CTTGACCCGAGATGACCTAC
152477 AGGGGGTTTG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (21 bp):
CTTGACCCGAGATGACCTACC
Left flanking sequence: Indices 151936 -- 152435
TTGGGAGATGGGGAGGTCAATCGCATGCAGGGTTTCCTTTCTCGGTCTCATCTATCTCTATAGTC
TAGTCCGCTCAAGACAACCCCCTGACCTAATGAATTCCTAGCATCCGCCGACCGGCTACATACGA
TGATGCCCAGCAACCTTTTTTGGCTTCCCAATAGAGATCTTCTTCACTTCTTAACCGGTTAATGA
AGAGCTCCACTTCTTCTTCTTTCTTGTGGTTCACCGCTATTGGTTTCATTCAAGCTTATGTTGTT
CTCAGGCAGGCTTAGAGGGCAATGAATGCCATTGTTAGGACCGGCGTTTCACTATCCTACTTTGG
TTTCTCCTCTCTGTCCGGTTCCTAGGTATCTGTAAAAAAACGGGTTTCTTCCGCGCATGAAATCA
TAGTGAAGCGAAGCATGAACATGAACGTGAATTAGTTTAAGATTCGATTTGGATAGTCATTGGTC
TTCCTCTTCTTCCTCCACTTTTCGACTTCATGGAAAGAAGGTTAG
Right flanking sequence: Indices 152477 -- 152976
AGGGGGTTTGGATACGGATACTGTTATGATCCAATTTAGCTAAATAGAGAGATCAAAGCTTTGAA
TCTCTCTTTTCCGGGAGTATTCTATGGAAAAGCCAACCCGATGCTTGCTCTAGTTATAGATGCCG
GCTTAGCTTAATGAATGGGTAATGATGAGTCTATATGAGAGTCTTTCTTGTTCCCACTTCCGGTT
TTAAACATACTACTCGATTAGGATCATCTTATTGACCCAAAGTATGAAACGAATGATTGTCCTTT
CTTAGTAAGGAACCCTCCAGTTTCGTCTTCCAAGACATCCCTCGCTCTTCTCCAAGTCATGATCG
CGAGTGAATTCTTCTGTTTTCTGCTAGCCGATGTAAACAATAGTGCAGCGTAGATCACCGGGCAT
GAACATCATACCAACACTTGTATTCCTGGGTATGTATTTGGTCCAGTGAAGGGCTTACGCTGTTG
TTCGCTGCTCTCCGAGCCCCGCTTTGACTTTCTTTAGCTACATAT
Found at i:166404 original size:18 final size:19
Alignment explanation
Indices: 166364--166404 Score: 59
Period size: 19 Copynumber: 2.2 Consensus size: 19
166354 TATAGTTCAG
166364 TCCCCTTGATCTTGTCTTT
1 TCCCCTTGATCTTGTCTTT
166383 TCCCCTTGAT-TT-TCTCTT
1 TCCCCTTGATCTTGTCT-TT
166401 TCCC
1 TCCC
166405 GATGAAAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 3 0.14
18 8 0.38
19 10 0.48
ACGTcount: A:0.05, C:0.37, G:0.07, T:0.51
Consensus pattern (19 bp):
TCCCCTTGATCTTGTCTTT
Left flanking sequence: Indices 165864 -- 166363
GCTTGAGTATATACCCTCCGCTAGATAGTCTGCTTTTCCTTTCTCTAGGTTTTGGGTGACTATTC
CTTCAAGGATAGTTTCGGTGAGGTTCTACTTGATCTTAGTTCTTTTCCTCAAAGTAGGGAGCTAA
AAGTCTTCTTTCTCTTTATCTCGTTTGGTACTCAATGCCCTAGTTCTCGCCCGAGAGAGAGTATC
TGACTTGTTTTCCTCAGTTTCCGTTGAGGATCCCTAGTTATCGAAGGGATAGTAGCTCGTATTCT
AGAGTGAAGCGAGCCTCCCCCTTCAAGTAGTAGCCCAAAGTTAAGTCAGTAGTCGTAGAGATGGC
TAGAGATCTAATTCATTCTCTAATTTCCCTGCACGTCTTTTTCCCGCTGAAGAGACAAATCAGGG
TGAGAAAGAGAAGGCTATTGAGAATGTAATGTCTAGTCTAGCTTTAGTCGTAGAGACGGCTAAGA
GAAAGAGAAGGCGCAGAGACAGAGACGACTAAAGATATAGTTCAG
Right flanking sequence: Indices 166405 -- 166904
GATGAAAGAAGTGTGAGCCATAGAAGGCGTAGATACAGATAGGGCTCTTTCTCGAGTTTCTTCCC
TTGATTTAGTAAAGGAGATGGCTAGGAGAAGGCTCTGTCTCTAGTGAATTCCCGTAGTGTGTGTC
TGCCCAGATGTGAGTGATCTACCTCAGTCGAGAGAGAGATCCCGCTATTGATTATGAATTCCAAG
GAACTAGGCAAAAAGCCTGACTACCCTTTAGAAAAAGGTCCTACAGGCAAAGAGAAAGAAAGGAT
TCAATGGAAGAAAAACTATTACTAGCCCATCCTGGCGAAAGGGAAGACATGGGATCACATCCATA
CGACTAAAAGGGCACACAATGATCGGGCATAAAAAGGTATGATCCTCTTTTCTCTTCTTTGAAAA
GCCTACGGGGGAGGAAATCCAGGGAAAAAGACACTATTCATATCCCAAATGGGAACTCATTCAAA
GGACTCAAAGACAGCCAATGAAGGGACATGGGATAGCCTATTAGG
Found at i:180085 original size:17 final size:17
Alignment explanation
Indices: 180063--180101 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
180053 AGTTTTTGAA
180063 AGTCTTTAGGAGAGACT
1 AGTCTTTAGGAGAGACT
180080 AGTCTTTAGGAGAGACT
1 AGTCTTTAGGAGAGACT
180097 AGTCT
1 AGTCT
180102 CTATTGACTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.28, C:0.13, G:0.28, T:0.31
Consensus pattern (17 bp):
AGTCTTTAGGAGAGACT
Left flanking sequence: Indices 179563 -- 180062
AAGAGGCGAGTGGAGGTATTGGCGAGCAGCGTACGAGCGCCTCCCTTAGACTTTTTTTTACATTC
ACAGGTATTGTGGGAACTCCTTTTTTCAGGTAGCCATAGTAACTCAGGGCTATAGTACTATTGCT
TTACTTCGTTTCGTCTAGAGCTCGAGACTCGTCGACGTTAGTCGGCTACCTACAGTAGTCAGTCA
GATAAGGGTTTTTGGGTTCCTTCCTTCCGTCTCTTCTCGAACAGCTTTGCCAAGTCTTCCTTACC
TGGCCTATGATAGGCAATACTCTACTCTGATCTTCTGGGCTCTTTCTTCGGCTTTCGAGTAGTAG
GGTGTTTCGACATCAAGAGGAATCCGGATTTGAGCTACTGGAAACAACTAGTGTGAATCAAGGTG
GCCGGGTAGGCCACCCCAACCCTATTGATTACTTCAGATGGGGGCGGCTTTCGAGATAGAGAACT
TCTAGGCGGCTCTCGCAAACCAAAAAACCAGTTCCAGTTTTTGAA
Right flanking sequence: Indices 180102 -- 180601
CTATTGACTGTAGGACGCAAGCCGTAGGCGATACTCGACAATACCTAGAAAGACCTAATGAATAT
AGCTAGAAAGACCTAATGAATATAGCTAGTCTCTCCTAAAGACTAGTCTCACAATTAGAAAATTT
GGCAGGTCACACAGACTTCTTGCTTTTCTAAGAGCAATAGGAACATCAAGATCAGAAGTGGGAAT
AGAAAGAGAAGAATCAGGGAGAGAGGAGATACCTGAATCTCGAGAGGTGATCTGATGAGTGGCGT
CAGGCAAGGTGGACTGTACCCTCTTCTTCTGTCTCGTATACACTTTAAGCTCAACGGGTTGAGAG
TTGGAAGCACCAGAGGAATCAATAGAGGATGAGGGAGTGAGACCCGGAACACTATCCGGAGGAAT
GGGGAGAACAACTGGTGATTCACTTACCTCTCTACTTCTCCTAATCTCCCCCTGAGGTAAGATGG
CATCACTAAGTTGCTCCCGTGAAACAAAGGATAGTTCATCAAAAG
Found at i:180172 original size:23 final size:23
Alignment explanation
Indices: 180146--180195 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
180136 TCGACAATAC
180146 CTAGAAAGACCTAATGAATATAG
1 CTAGAAAGACCTAATGAATATAG
180169 CTAGAAAGACCTAATGAATATAG
1 CTAGAAAGACCTAATGAATATAG
180192 CTAG
1 CTAG
180196 TCTCTCCTAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.46, C:0.14, G:0.18, T:0.22
Consensus pattern (23 bp):
CTAGAAAGACCTAATGAATATAG
Left flanking sequence: Indices 179646 -- 180145
CCTTTTTTCAGGTAGCCATAGTAACTCAGGGCTATAGTACTATTGCTTTACTTCGTTTCGTCTAG
AGCTCGAGACTCGTCGACGTTAGTCGGCTACCTACAGTAGTCAGTCAGATAAGGGTTTTTGGGTT
CCTTCCTTCCGTCTCTTCTCGAACAGCTTTGCCAAGTCTTCCTTACCTGGCCTATGATAGGCAAT
ACTCTACTCTGATCTTCTGGGCTCTTTCTTCGGCTTTCGAGTAGTAGGGTGTTTCGACATCAAGA
GGAATCCGGATTTGAGCTACTGGAAACAACTAGTGTGAATCAAGGTGGCCGGGTAGGCCACCCCA
ACCCTATTGATTACTTCAGATGGGGGCGGCTTTCGAGATAGAGAACTTCTAGGCGGCTCTCGCAA
ACCAAAAAACCAGTTCCAGTTTTTGAAAGTCTTTAGGAGAGACTAGTCTTTAGGAGAGACTAGTC
TCTATTGACTGTAGGACGCAAGCCGTAGGCGATACTCGACAATAC
Right flanking sequence: Indices 180196 -- 180695
TCTCTCCTAAAGACTAGTCTCACAATTAGAAAATTTGGCAGGTCACACAGACTTCTTGCTTTTCT
AAGAGCAATAGGAACATCAAGATCAGAAGTGGGAATAGAAAGAGAAGAATCAGGGAGAGAGGAGA
TACCTGAATCTCGAGAGGTGATCTGATGAGTGGCGTCAGGCAAGGTGGACTGTACCCTCTTCTTC
TGTCTCGTATACACTTTAAGCTCAACGGGTTGAGAGTTGGAAGCACCAGAGGAATCAATAGAGGA
TGAGGGAGTGAGACCCGGAACACTATCCGGAGGAATGGGGAGAACAACTGGTGATTCACTTACCT
CTCTACTTCTCCTAATCTCCCCCTGAGGTAAGATGGCATCACTAAGTTGCTCCCGTGAAACAAAG
GATAGTTCATCAAAAGTCACATCCCGAGAAAGATACACATGGCCCCTTTTGACATCATAACACGT
TTACCCCTGTTTACCGTTATTATATCCTAGGAAGACAGACTGAAT
Found at i:193887 original size:6 final size:6
Alignment explanation
Indices: 193878--193903 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
193868 GCTAGAAAGA
193878 AGCCCT AGCCCT AGCCCT AGCCCT AG
1 AGCCCT AGCCCT AGCCCT AGCCCT AG
193904 AGCTATAGCC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.19, C:0.46, G:0.19, T:0.15
Consensus pattern (6 bp):
AGCCCT
Left flanking sequence: Indices 193378 -- 193877
AATCCCAACCGTCCATAGGCACTTAAGGCAAGGGCCGTGATCGGCGGAAGGCCCTCTACCTGCTT
CCATTGGGACTTCATTCCGCAACCCGGGGGAAGTGGACTGCCATTACGCCTTGTCACGGAAGGCT
GAGGATTTCTGGTAACCTATCGGGATGGCCTTGACCTCCTTTTCTCCTGCGCACAAACACACTTT
ATGCCCAGGCTTCCATACCGATCCGGCCTTCATCATAGGCTAGCATAGCAGACAATAACGCGAAA
TCCAGGAAGGGGGAGGGGAATGCAAAATCAGAAAAACCGTTAGGCTAGTTCCCGTGGAGTGAGTC
TAGTGCTTCCCTTTAACCTAGAAGCACTCAGTGAGCGTTCAACAATGTCCTTCCTGGCCTGTTGT
TTGAGTTGACCGAAGGGCGGCGGGTTGAGGGTACCGAGAGGAATGAATTCGAGTAGTAGCCAGGG
GTTTTCAAAAGAATGAAGTAGAGCCGCGAGCAAGAGCTAGAAAGA
Right flanking sequence: Indices 193904 -- 194403
AGCTATAGCCAGAGCTCAGTAACTAATAGCCAAGGACGGTGGGTGTAGCGGACCCCCTGCTCGAA
GATCAGACAATATGCTATGTCACGAACGCCATAGGAGGGGCACTTGGGTTGAGCTGAGCCTAGCA
CCTGACCGGATGAACTTCCACTGTTGAGCCTAAATCTCTTCCGCAGAAAGGGGGTCGGCAGATCA
ATCGGAAAGGTTGAACCCACTCCCCTGGATGGAAACTTCCCTGTCAATGTAACCAACCACAAACA
AATACCACAAACAAAGCTCCTTCTCTTAGGGGCTCTCCCCTATCACTCGAAATTCGTTGGGAGGG
CTTTACGTACTATTTTGCCTATCGACCCGAATGAATCAGTCGATCCACATTATATAGAAATCTCA
CTCATGCAGAAGCGTAGGGAACGAACGGAGCGCGGATGCGCGAAGTGAGAACTAGCAATGCACGT
TGGGAATTTTGACCCGGACCAAAAAAAAGGAAGAAGGCGAGAGGG
Found at i:194172 original size:13 final size:13
Alignment explanation
Indices: 194154--194178 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
194144 AATGTAACCA
194154 ACCACAAACAAAT
1 ACCACAAACAAAT
194167 ACCACAAACAAA
1 ACCACAAACAAA
194179 GCTCCTTCTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.32, G:0.00, T:0.04
Consensus pattern (13 bp):
ACCACAAACAAAT
Left flanking sequence: Indices 193654 -- 194153
GGAATGCAAAATCAGAAAAACCGTTAGGCTAGTTCCCGTGGAGTGAGTCTAGTGCTTCCCTTTAA
CCTAGAAGCACTCAGTGAGCGTTCAACAATGTCCTTCCTGGCCTGTTGTTTGAGTTGACCGAAGG
GCGGCGGGTTGAGGGTACCGAGAGGAATGAATTCGAGTAGTAGCCAGGGGTTTTCAAAAGAATGA
AGTAGAGCCGCGAGCAAGAGCTAGAAAGAAGCCCTAGCCCTAGCCCTAGCCCTAGAGCTATAGCC
AGAGCTCAGTAACTAATAGCCAAGGACGGTGGGTGTAGCGGACCCCCTGCTCGAAGATCAGACAA
TATGCTATGTCACGAACGCCATAGGAGGGGCACTTGGGTTGAGCTGAGCCTAGCACCTGACCGGA
TGAACTTCCACTGTTGAGCCTAAATCTCTTCCGCAGAAAGGGGGTCGGCAGATCAATCGGAAAGG
TTGAACCCACTCCCCTGGATGGAAACTTCCCTGTCAATGTAACCA
Right flanking sequence: Indices 194179 -- 194678
GCTCCTTCTCTTAGGGGCTCTCCCCTATCACTCGAAATTCGTTGGGAGGGCTTTACGTACTATTT
TGCCTATCGACCCGAATGAATCAGTCGATCCACATTATATAGAAATCTCACTCATGCAGAAGCGT
AGGGAACGAACGGAGCGCGGATGCGCGAAGTGAGAACTAGCAATGCACGTTGGGAATTTTGACCC
GGACCAAAAAAAAGGAAGAAGGCGAGAGGGATTGCCCCGAAGCAATAGCAAGAGCTAACCTAAGT
GCGCAAGCACACTGCTTAACAGAGCTAGGCGTACTTGCTCTTTTACTGGTCTCGGCTCTCACGGC
TAGAGAGAAATAGCCCTCCTTCGTTGGCTCGAAAGAACCAGCAAAGGGAGCAAGAAAACGGGTGC
TATAACGCGCAACGGCTTTCGAGTTCCCTTTACGTGAATTGGGCCGTTGCTTGCTCGCTTGCCCT
TCCCCACCCCCCAAAAAGGGGATCCATTAAAGGGATCGGCTCATT
Found at i:199877 original size:43 final size:43
Alignment explanation
Indices: 199816--199901 Score: 154
Period size: 43 Copynumber: 2.0 Consensus size: 43
199806 TCCGTAGTTT
*
199816 GATACTAGCGCACTACGGCTTGACTTGACGTTGCCTACTTCTA
1 GATACTAGCGAACTACGGCTTGACTTGACGTTGCCTACTTCTA
*
199859 GATACTAGCTAACTACGGCTTGACTTGACGTTGCCTACTTCTA
1 GATACTAGCGAACTACGGCTTGACTTGACGTTGCCTACTTCTA
199902 TCAAGTGGAG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.31
Consensus pattern (43 bp):
GATACTAGCGAACTACGGCTTGACTTGACGTTGCCTACTTCTA
Left flanking sequence: Indices 199316 -- 199815
TCGGTAAAGTGAAACCCCTTACCTTCGGCCCTGAACCTCGTAAACTCGGCTAAAGTAGCTTCGCT
CCTGAACCCCACGGAGCGGTAAAGTTCCTGCGCTCCTTCACTTTCGGTAAAGTGTCTCTCTTTCA
TCTACTTCGTTCCTTAGAACTCAGTGACTCTCTTTCAGATCCTTTGGTTGCCCTCTTCCGTTGGT
TGCCCTCCTTAAGCTTACCTCCTTCGTCTCCTTTTGTCGAGTCTTCAGTATCTTCCTCTGCTTGG
CTTGAACAGGGGGCCTACTTCTTTAGTCAGTTGTAGTGGCGAAGGGCGTCATCAGGTTGTTGCTG
ACCACAAAAGATTGATCCAAGAGGCCCATAACTCAGGTCTGGCTTTCAAATGGTCGTATGTTAAG
GAAGCTTCTGAAGAAGCGGGCTAACGCACGTAGGCTTTGAAGCCGTATATCAAGTGTAGTTCCGG
CAGGGGGTCCGAATAGAAGTAGTGTAGTCACTTGCTCCGTAGTTT
Right flanking sequence: Indices 199902 -- 200401
TCAAGTGGAGTGGAGTCAACTGACGCGCTGCGGCTTGAATTGACGTTGCCTTATAAATATATATA
TATATTTATAATAAGTAGGCCCAGCAAGCAAGCTCCGGCTATCAATAGCAAGACCCAGCAAACAG
AGGAACTGACGGAACTACACCTGACGGTACGGAATATAGAGGCTCTGGCCCAGACGGAACGAACT
TGATGTCGGCTTCAAAGCCGTATCTTATTGATCTCCTTAACCTTCGGCTAAAGTCAAGTTGCTTC
CTATCTTGAATCTCCTTCTTAGTCCCTTAACTCCACCTCCACCTCTTGCAGATCCTTAGTCTCCT
ACTTAAGTTTCATTCCGTTCCGTCAGGGTGCTTCCATTTATTCGTTGAACCAACCGGACGCGAGG
ATCTTCTCAAGAAGCGTAAGCGAGGATACGAAGTAACTTAGTTCCGAAAGGGACTCAGCAAGAAA
AATGGTTAGGTTTTTTTATTTATATTAGAATATTAGAATTAGAAA
Found at i:208521 original size:36 final size:36
Alignment explanation
Indices: 208474--208644 Score: 111
Period size: 31 Copynumber: 4.6 Consensus size: 36
208464 ACCTGACAGC
208474 TAACATAAACTGCTAACAAGTTCAGTTCAGTTCAGT
1 TAACATAAACTGCTAACAAGTTCAGTTCAGTTCAGT
** ** **
208510 TAACATAAACTGCTAACAACCTGACAGCAAGTGAAGTGAAGT
1 TAACATAAACTGCTAACAA---G--TTC-AGTTCAGTTCAGT
* * *
208552 TAACATAAGCTGAC-AGCAAGTGAAGTAAAGTTCAGTTCAGT
1 TAACATAAACTG-CTAACAAGT----T-CAGTTCAGTTCAGT
208593 TAACATAAACTGCTAAC-A----AGTTCAGTTCAGT
1 TAACATAAACTGCTAACAAGTTCAGTTCAGTTCAGT
208624 TAACATAAACTGCTAACAAGT
1 TAACATAAACTGCTAACAAGT
208645 GAAGTGAAGT
Statistics
Matches: 102, Mismatches: 17, Indels: 34
0.67 0.11 0.22
Matches are distributed among these distances:
31 30 0.29
32 1 0.01
36 19 0.19
39 2 0.02
40 2 0.02
41 23 0.23
42 24 0.24
43 1 0.01
ACGTcount: A:0.40, C:0.18, G:0.16, T:0.25
Consensus pattern (36 bp):
TAACATAAACTGCTAACAAGTTCAGTTCAGTTCAGT
Left flanking sequence: Indices 207974 -- 208473
GCTGGAAGGACTCATTTCAGACGGAGCAGCCAATAAAGGTCTTTATCAAGGACAGTCAGATCGAG
GCAAGGGTTCATCCATCCAAGAATTGGAGGAGCTCAAAATCCTTCTTTTATTGCAGGCCAGACAA
GGGGCCTATCCCTCATCCATGAATAGCTGGGCCAAGGATAAACCGGGAACGAAAACCCAAAATGG
TAAATATCCGCAGGAATGGCTTCAATCTATATTAGCGGGAACCCAACCACTAGTCTTTCTTACGC
CGGTAGTTGTTCTTCCTTCGGAGCATGAGTCCAACCTTCCGTCCGGGTCCGAGGACAAGGAGAGC
TGCTAGTATTGGTAACTCCTTGGATCGGAGCATATTGCTATGAAATGATCCTACGAATCCGAGAA
AGAATAATACTCATTTGAAGCAGCAAGATACGGCTCAGCGGAGCTGAAAAGCGACGAGCGGAGCA
GCCTACACTTGCTGCCTCTACATTTACTGCAAACAACCTGACAGC
Right flanking sequence: Indices 208645 -- 209144
GAAGTGAAGTAAAGCTAAGCGCGCAACGGCCTAAATAAGCAACCTGACGCGTTGCGGCTCCCTGC
CGGTCGCCTACACTTGCACGCTTGCTGCTTCGCTCGTTGCTTTTTGGCCTTTAGACTCGCTTCGG
CGACTTCGCTCGTTGGGTGAGGTCAGTTTTTGATCTTCTAATTCTCCAACCCATATTTCTATCTC
ATCCGCACAGGAACCACTAGAACAACTAACCACGTGAGTTCTTCCACCATGATATCTCTCTCTTG
GAAACACAGCCAGTCAAGTCACCACACATGGATTTGTTGCGATTATAGTAATTTCCGCAGGGGAC
GTAGGGATCACCTCTTTCTCGATCGACAGGGATCATCGATTCATACTGTTTATTTATGCTATGAT
TCACCAGCACGCCTACAACCTTTTCTCTAATTCGACCCACCCATTAAAGACATGTTTTGAAAAGA
TGGGGATTGGGGCTATTGATCCGGAAAGACGAGATGGAATTGCTA
Found at i:208617 original size:31 final size:31
Alignment explanation
Indices: 208579--208644 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
208569 AAGTGAAGTA
208579 AAGTTCAGTTCAGTTAACATAAACTGCTAAC
1 AAGTTCAGTTCAGTTAACATAAACTGCTAAC
208610 AAGTTCAGTTCAGTTAACATAAACTGCTAAC
1 AAGTTCAGTTCAGTTAACATAAACTGCTAAC
208641 AAGT
1 AAGT
208645 GAAGTGAAGT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.29
Consensus pattern (31 bp):
AAGTTCAGTTCAGTTAACATAAACTGCTAAC
Left flanking sequence: Indices 208079 -- 208578
CCTTCTTTTATTGCAGGCCAGACAAGGGGCCTATCCCTCATCCATGAATAGCTGGGCCAAGGATA
AACCGGGAACGAAAACCCAAAATGGTAAATATCCGCAGGAATGGCTTCAATCTATATTAGCGGGA
ACCCAACCACTAGTCTTTCTTACGCCGGTAGTTGTTCTTCCTTCGGAGCATGAGTCCAACCTTCC
GTCCGGGTCCGAGGACAAGGAGAGCTGCTAGTATTGGTAACTCCTTGGATCGGAGCATATTGCTA
TGAAATGATCCTACGAATCCGAGAAAGAATAATACTCATTTGAAGCAGCAAGATACGGCTCAGCG
GAGCTGAAAAGCGACGAGCGGAGCAGCCTACACTTGCTGCCTCTACATTTACTGCAAACAACCTG
ACAGCTAACATAAACTGCTAACAAGTTCAGTTCAGTTCAGTTAACATAAACTGCTAACAACCTGA
CAGCAAGTGAAGTGAAGTTAACATAAGCTGACAGCAAGTGAAGTA
Right flanking sequence: Indices 208645 -- 209144
GAAGTGAAGTAAAGCTAAGCGCGCAACGGCCTAAATAAGCAACCTGACGCGTTGCGGCTCCCTGC
CGGTCGCCTACACTTGCACGCTTGCTGCTTCGCTCGTTGCTTTTTGGCCTTTAGACTCGCTTCGG
CGACTTCGCTCGTTGGGTGAGGTCAGTTTTTGATCTTCTAATTCTCCAACCCATATTTCTATCTC
ATCCGCACAGGAACCACTAGAACAACTAACCACGTGAGTTCTTCCACCATGATATCTCTCTCTTG
GAAACACAGCCAGTCAAGTCACCACACATGGATTTGTTGCGATTATAGTAATTTCCGCAGGGGAC
GTAGGGATCACCTCTTTCTCGATCGACAGGGATCATCGATTCATACTGTTTATTTATGCTATGAT
TCACCAGCACGCCTACAACCTTTTCTCTAATTCGACCCACCCATTAAAGACATGTTTTGAAAAGA
TGGGGATTGGGGCTATTGATCCGGAAAGACGAGATGGAATTGCTA
Found at i:242697 original size:24 final size:24
Alignment explanation
Indices: 242669--242793 Score: 205
Period size: 24 Copynumber: 5.2 Consensus size: 24
242659 GGGTTATCTT
*
242669 AGTGATGATATCGATATTGATGAG
1 AGTGATGATAGCGATATTGATGAG
*
242693 AGTGACGATAGCGATATTGATGAG
1 AGTGATGATAGCGATATTGATGAG
* *
242717 AATGACGATAGCGATATTGATGAG
1 AGTGATGATAGCGATATTGATGAG
242741 AGTGATGATAGCGATATTGATGAG
1 AGTGATGATAGCGATATTGATGAG
*
242765 AGTGATGATATCGATATTGATGAG
1 AGTGATGATAGCGATATTGATGAG
242789 AGTGA
1 AGTGA
242794 CGATCTTAAT
Statistics
Matches: 95, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 95 1.00
ACGTcount: A:0.34, C:0.06, G:0.31, T:0.29
Consensus pattern (24 bp):
AGTGATGATAGCGATATTGATGAG
Left flanking sequence: Indices 242169 -- 242668
TCGCGAACTGCGATTGGATTGATGATGAAGAAAGAGAATTCTTGGTTCAGTTCTCCACCTTAACA
ACAGAAAAAAGGATTGACCAAATTCTATTGAGTCTGACTCATAGCGATCGTTTATCAAAGAATGA
CTCTGGTTATCAAATGATTGAACAACCGGGATCAATTTACTTACGATACTTAGTTGACATTCATA
AAAAGTATCTAATGAATTATGAGTTCAGTAGATCCTGTTTAGCAGAAAGAAGGATATTCCTTGCT
CATTATCAGACAATCACTTATTCACAAAGCTCGTGTAGAGCTAATAGTTCGCATTTTCGATCTCA
TGGAAAACCTGTTTCGCTCCGCTTAGCCCTATCCCCTTCTAGGGGTATTTTTTTGATAGGTTCTA
TAGGAACTGGACGATCCCATTTGGTCAAATACCTAGCGACAAACTCCTATGTTCCTTTCATTACG
GTATTTCCGAACAAGTTCCTGGATGACAAGGCTAAGGGTTATCTT
Right flanking sequence: Indices 242794 -- 243293
CGATCTTAATCATGACCTTGATACAGAGCTGCTAAATATGACGAATGTGCTAACTATGTATATGA
TGCCGAAAATGGACCAATTTGATATCACCCTTCAATTCGAATTAGCAAAAGCAATGTCTCCTTGC
ATAATATGGATTCCAAACATTCATGAGCTGTATGTGAATGAGTCGAATTACTTATCCCTCGGTCT
ATTAGTAAACCATCTCTCCAGGGATTGTGAAAGATGTTCCACTCGAAATATTCTTGTTATTGCTT
CGACTCATATTCCCCAAAAAGTGGATCCCGCTCTAATAGCTCCGAATAAATCAAATACATGCATT
AAGATACGAAGGTTTCTTATTCCACAACAACGAAAGTACTTTTTCATTCTTTCATCTACTAGGGG
ATTCCACTTGGAAAAGAAAATGTTCCATACTCAAAGATTTGGGTCCATAACCATGGGTTCCAATG
CACGAAATCTTGTAGCACTTACCAGTGGGGCCCTATCAATTAGTA
Found at i:261052 original size:68 final size:67
Alignment explanation
Indices: 260935--261065 Score: 169
Period size: 68 Copynumber: 1.9 Consensus size: 67
260925 CGGAACTAAC
* *
260935 GAGAAGTGGGAAACGTCAAGTTAAGCCGTAGTTAGCGCGTAGCCACACTACGGCTTA-ACTGACG
1 GAGAAGTAGGAAACGTCAAGTCAAGCCGTAGTTA-CGCGTAGCCACACTACGGC-TACACTGACG
260999 GAAT
64 GAAT
*
261003 GAGAAGTAGGAAACGTCAAGTCAAGCCGTAGTTTA-GC-TACGCTCGCACTACGGCTACACTGAC
1 GAGAAGTAGGAAACGTCAAGTCAAGCCGTAG-TTACGCGTA-GC-CACACTACGGCTACACTGAC
261066 TAACTATACT
Statistics
Matches: 56, Mismatches: 3, Indels: 8
0.84 0.04 0.12
Matches are distributed among these distances:
66 2 0.04
67 6 0.11
68 45 0.80
69 3 0.05
ACGTcount: A:0.31, C:0.23, G:0.27, T:0.19
Consensus pattern (67 bp):
GAGAAGTAGGAAACGTCAAGTCAAGCCGTAGTTACGCGTAGCCACACTACGGCTACACTGACGGA
AT
Left flanking sequence: Indices 260435 -- 260934
TACCAAAGTCGAATCAAGAGAGAAAGTCAGTGCCTCTGTTAGCTGGGCATTAAGGGCGTCAGGTT
GTTATTTGTTAGCTGAGCCTCCACTTGCTCGCTCGACCGGCCCCTCTTGACGGAACTAAACTCTC
TCTATCATCTCAAAAGCCGGCTGTGCAGAAAGAGAAAGACGAGCGTCAGCCAAGCGAAGCGAACA
ACAGCTATAACAACAATTGACATTGCCTGTTCCTGCTCCAGTTCTAGTTCCATCTGTTTGTCTGC
TAGTTAGTGAAACTCGGATACATCAATCTCTCTCTCTGGATTGATACCTACTATATCGTATCATA
AAAACAGGTTGGTCGAGCGACTTCTATATAGGTGTAGTGTACTTCGGCTAGGGAACTTAATCCCA
ACTAGAAAGAGAGCCACTTGACAAAACGATAAGGAGCGAGAAAGCTCGTTTCATCAGTCTATCGA
GTTTCAACCGAGGCAAGATATGGCACAGTAAGGAACGGAACTAAC
Right flanking sequence: Indices 261066 -- 261565
TAACTATACTTTAATTAAAATTAGGGCCCAGCAAGCGGAGGAAAAGCAACTTTAGCGAAGGTTCA
GCAGCCGCAGGGACCATTAGACTCAGGAGAGTAACGCTTAGTGGAGAGAGGGACGTGAGGGTCTT
CAAGAGAATTGAGAGAGGATCAGAGATATGGAATGCAGAACGAGCATATTCAATAGTAGAGAGTG
GAGTTCAGCTAGGCCCAGGCCCAGCAGCAAGAGACGGCTTCAAAGCAACTTTAGCCGAACGTGAA
GGAGAGAAAGAAGTCGGCTTTAAAGCCTACTCCTTTCTAGTTCCGTTCCGTCAGGGCCAGCTAAT
TCAGATAGAGCGAGCTATGGCAGAGCAGGTTGGGGTTATTCCCCTAATGGTAAGTTCAATACGAG
GGCCTAGTCGGTGTTGAAAGAGACGGTTTACTTTACTCGCCTTCGACCCGGCTGGGTTTGGAATA
CACTAGTTGGGGCAGGTAGACCTGAATAGGGAGAACGAAGGGGTT
Found at i:291324 original size:19 final size:19
Alignment explanation
Indices: 291300--291336 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
291290 GGTGTACTAG
291300 TGTATTGCCTACTTCCTAT
1 TGTATTGCCTACTTCCTAT
291319 TGTATTGCCTACTTCCTA
1 TGTATTGCCTACTTCCTA
291337 GTGCCTAGCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.16, C:0.27, G:0.11, T:0.46
Consensus pattern (19 bp):
TGTATTGCCTACTTCCTAT
Left flanking sequence: Indices 290800 -- 291299
GTGATACCCTTTCGGATAGGGTATGTGGTCAACATATGAGGGATATGGCCTTTTATAGACCATAG
ATGATCCCGTCACTTGACTTTGGAGATCATGCACTATCTTAGAGACCAATTCCGTCAACGATGGC
ATGGAAGGTCCTGCTGGTTGCACGATCACATTTGGTGGTACTGGCGTGGGGTGTGGTGCCTGAGT
GACTACCACAGTGGCGGGTGCCGTGGTTTGTTCCATGTTGGCCACACGTGTGGCCAAAGCAGCAA
TCTCAGCATCAGACGGGGGCAAGGGTGGATTGGCACCTGCTAGACGTGCATGGAGAGCTGCAATT
TCTGAATCGCGCTCTTCTAGCTTACGCCGCATTTCAGCCATCTATTCCTCAATGGCATGAGAATC
ATCAGCACCGGCCATCATCACGGCCGCATAGCTCAGTGCACTAGAAGCACTGGATTTCGTATTTC
CTAATGCCTACTGGCTTGTATTCCTTAGTAGGTTAGGTGTACTAG
Right flanking sequence: Indices 291337 -- 291836
GTGCCTAGCTTGCCTATCCTGCTGTAGTGCCTAGCTAGCCTTCCTTGCTTTCATTAGTAGGTTAT
GTTTAGTAGGTTATTTGTATTGCTTGTATTGTTTGTATTGCCTACTTCCTAGCTGTCTTGCCTAC
TAGGCCTGATAGAGCGTAGCGAACGTTGTGCAAGCTCCGCCTTTCCTTTTATTGAGTGCGCAGCG
AGCGTAGCGAGCGGAGTGAGTCCTGTACTTATGTAAAAGTGCGCAGCGAGCGTAGCGAGCGGAGC
CCCCGATTTTCCGATCTTCTGTGACCTTTCCTTGACTTATCGACTGCGAGGTGCAAGCTATAGTA
TAGGGTGTGTGGGGCTCCGCATAGACCAAAGTCTAAGCGGTGGTTCCGTTACTTACTGGTGATGT
TTGCTCCGTGTGGAGTATATCCTCTTCTCTTCCCATCGAATTGTGGTTAGCCTTCCCCGATAGAG
GGATACTAACATGCTATGAGTTGGGAGTTGTAAGGGGATACTGTC
Found at i:299958 original size:69 final size:69
Alignment explanation
Indices: 299876--300014 Score: 174
Period size: 69 Copynumber: 2.0 Consensus size: 69
299866 ACTTTTTAAT
* * * *
299876 CAATTTTACGGGGTTTCATGAATTG-TGAAGATTCGATATCGGCCCTTAGAGCGGAAAA-TCGGT
1 CAATTTTACGGGGTTTCATGAATTGTTCAA-ATTCGACACCGGCCCATAGAGCGGAAAACTC-GT
299939 TTAAGC
64 TTAAGC
* * * *
299945 CAATTTTACGGGGTTTCGTGACTTGTTCCAATTTGACACCGGCCCATAGAGCGGAAAACTCGTTT
1 CAATTTTACGGGGTTTCATGAATTGTTCAAATTCGACACCGGCCCATAGAGCGGAAAACTCGTTT
300010 AAGC
66 AAGC
300014 C
1 C
300015 GAAAATACGG
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
69 56 0.93
70 4 0.07
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (69 bp):
CAATTTTACGGGGTTTCATGAATTGTTCAAATTCGACACCGGCCCATAGAGCGGAAAACTCGTTT
AAGC
Left flanking sequence: Indices 299376 -- 299875
TCAATCAAGTCCGAAAAGACCAGCTTCACTCCAATTGAGCACTGCTTTTTCTTCGACGAATGAAA
GAAGAAAGAAAAGGCCCGCCTTTTTAAGCGGTACATCGGCCCGAGGTATAAGCGCCCCTTCTGGC
GGATCCCCCTTCCTCATGCTACAGTCTGGTCTGCTTCCCTATGGGAAGCTTGGACGAGGTCGCGC
AGGGACGGCAACTAAACCACTGCTTGGACATTCAAGCAGGCTCACTTCGGTTAATGAAACTGGCG
TTAGCAATCTACCTGATTCGATTCTTCTAGCCTACGGTTCCATAGCAGTCTGCCCACGTCGCATC
CAGACGACGATGTCTGCCCACTATTCAGATTAGACCTAGGGGTGCCCTTCGCACTTTCGTAGAGC
ACAACCAATCAGTCAGATGTCGGCTTCAAAGCAGCCTACGTGCGCCCAAATCTCTATTTTCTATT
AGATTTGATTTATATATTATATTGTCCAGAATCTTACTTTTTAAT
Right flanking sequence: Indices 300015 -- 300514
GAAAATACGGGGTTTGATGACACAACTAAACCTGAAGCTTTGAAGCCTACTCACTCCTTTATAGT
GGAGTTCCATCAACTAGCGCACGTAGGCTGCTTTGAAGCCTCCTCCTTTATAGTGTAGTGAACAA
GCAACGGCTGATCTACGAGCACCGTTGCGCTAACGCGCAGCCGTTTTCTTGCTGGATATGAAATA
GAGGAAGCAACTTTACCGAAGGACGAAGCCTCAATTACATCGACCCTTGTTTACGAGGATCTGCA
AGAGTGGACCAGTCAGCTGCTTATGAGTGGGGGTAGGCCGCCCAGCCCATCAATACGAAGCTTTA
CGCGCACCAGCTCACCACAGCCGCATTAGCTGTTAGTCTCGTTGATCCTGTTGTACCTGGATCAA
CCGTTCTTTGCCACAGGCCAGATAGGAATGAATGGATGAACGCAAGGCAAGCAAGAAGATGCAAT
AGAGGAGATCAACTGGATCCGCAGTCGTGTTTCTCGTGTAGTGAA
Found at i:303236 original size:31 final size:31
Alignment explanation
Indices: 303198--303267 Score: 131
Period size: 31 Copynumber: 2.3 Consensus size: 31
303188 CATCTCGCTC
*
303198 GTAAACTCGCTCGCTTGACTTCATTTACAAT
1 GTAAACTCGCTCGCTTGACTTCATTGACAAT
303229 GTAAACTCGCTCGCTTGACTTCATTGACAAT
1 GTAAACTCGCTCGCTTGACTTCATTGACAAT
303260 GTAAACTC
1 GTAAACTC
303268 ATGAACAGTG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.33
Consensus pattern (31 bp):
GTAAACTCGCTCGCTTGACTTCATTGACAAT
Left flanking sequence: Indices 302698 -- 303197
CCTATATATATATATATAGGTATACGACGAATGAGACCTGCGAGATTATATACCAAATATTTCAC
CATTCTTACCAGTACTTCACCTCTTTGACTTATCCTTATAATTATAATTATATGTATCCATACAA
ATAATTATATATGGATACATAAGACGAATGAGACAGCATCCGAGCGAGTGAGTCTACGGCAGATA
AGTCGCAAATAAGGATGGTGAAGATCTTGATGGCAAATCAGAATCGTTTTCTACAGATAAGAATG
ATCAGATTCGTAGCAAAGTAGCAATTAACTAAACCATACCATTCTGTCTTGAACAAACCTTTAAG
ATATGAATAAAATCAAATAAGGATGGTTTTCTTATCTTAAGACACGTAGAGTACACATAAATCAT
CTCAAATTCTAGATAAGGGTTAATAAATCAAGAAAATAATAGAAGGATGAAGTCTCGCTCGTAAT
AAGGATGCAGACAAGGAAATAAGGATCTTGTATGGCATCTCGCTC
Right flanking sequence: Indices 303268 -- 303767
ATGAACAGTGTTCGTAATAAGCTTCATTCGTAAACTCAATCACAGCTTTATTCCCGTATATAAAA
ATATATATGCTCTTTCTTTGCTTCAGCTTCCACCCTTTCTTTTGAACGTCTTTTCTTACGTCTTA
ATTACGGACGTTCGTAAACTCACTCGCACGGATGCAGTCATTAGGTCTATCTAGGTATTGTATCG
CCTACGGCTTGCCGTAGTCATTAGGAGATATAGGTACTACTCGCCTACGGCTTGCCGTAGCAGTC
AATAGAAAAAAGACTAGTCTCTCCTAAAGACTAGTCTCTCCTGCTAGAAAGACCTAATGAATCTT
GCTAGTCTCTCCTAAAGAAAAGACTGGTCCATGATTGATTATCTTCGACAATGAAGACTTCTGAA
TCCGGCAATTCATCTGATATTGGCCTCGATCACATTTGCAGCTAGCCAATCAGACAATGACTTGG
CCTTTCACAGCTCTTTGAGAAAGACATACAATTTCGAATGAAGAA
Found at i:303558 original size:17 final size:17
Alignment explanation
Indices: 303536--303569 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
303526 TCAATAGAAA
303536 AAAGACTAGTCTCTCCT
1 AAAGACTAGTCTCTCCT
303553 AAAGACTAGTCTCTCCT
1 AAAGACTAGTCTCTCCT
303570 GCTAGAAAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (17 bp):
AAAGACTAGTCTCTCCT
Left flanking sequence: Indices 303036 -- 303535
CAAATAAGGATGGTTTTCTTATCTTAAGACACGTAGAGTACACATAAATCATCTCAAATTCTAGA
TAAGGGTTAATAAATCAAGAAAATAATAGAAGGATGAAGTCTCGCTCGTAATAAGGATGCAGACA
AGGAAATAAGGATCTTGTATGGCATCTCGCTCGTAAACTCGCTCGCTTGACTTCATTTACAATGT
AAACTCGCTCGCTTGACTTCATTGACAATGTAAACTCATGAACAGTGTTCGTAATAAGCTTCATT
CGTAAACTCAATCACAGCTTTATTCCCGTATATAAAAATATATATGCTCTTTCTTTGCTTCAGCT
TCCACCCTTTCTTTTGAACGTCTTTTCTTACGTCTTAATTACGGACGTTCGTAAACTCACTCGCA
CGGATGCAGTCATTAGGTCTATCTAGGTATTGTATCGCCTACGGCTTGCCGTAGTCATTAGGAGA
TATAGGTACTACTCGCCTACGGCTTGCCGTAGCAGTCAATAGAAA
Right flanking sequence: Indices 303570 -- 304069
GCTAGAAAGACCTAATGAATCTTGCTAGTCTCTCCTAAAGAAAAGACTGGTCCATGATTGATTAT
CTTCGACAATGAAGACTTCTGAATCCGGCAATTCATCTGATATTGGCCTCGATCACATTTGCAGC
TAGCCAATCAGACAATGACTTGGCCTTTCACAGCTCTTTGAGAAAGACATACAATTTCGAATGAA
GAAAGCTTCAACAACCAACGAGCTGGTCGTCCTGACAATACTGGCTGAGTCAAGAGATAACGAAG
AGGATCCGCTTTGGTCAAAAAATGGATTTTATGTCCCAACATAGTCTGTCTCAACTTCTGTGTAG
ATCAAAGCAAGGCACATTCGTTCAATCTTCGGATATCTTTGCTCAGTAGGAGTCATTATTCTGCT
AAGATAGTCAAACCCTCTCCTAGCCATCATGATCCTCTTCTTGGGCTAATAAAGCCCCCAGTGAA
CTGTCAGTAGAAGACAAATACAGAATCCGGGGTTTGCCTCTAATA
Found at i:309923 original size:17 final size:17
Alignment explanation
Indices: 309903--309941 Score: 78
Period size: 17 Copynumber: 2.3 Consensus size: 17
309893 CAGTCAATAG
309903 AGACTAGTCTCTCCTAA
1 AGACTAGTCTCTCCTAA
309920 AGACTAGTCTCTCCTAA
1 AGACTAGTCTCTCCTAA
309937 AGACT
1 AGACT
309942 CGTTTTGACT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.31, C:0.28, G:0.13, T:0.28
Consensus pattern (17 bp):
AGACTAGTCTCTCCTAA
Left flanking sequence: Indices 309403 -- 309902
AGTATACCGGTTCCGAAGTCACGCGCGACCGAACGTATGTGGGCTGGGTCGGAACTCGCGCTCGT
TAGGATCTACTATATGGAATGGATGGTGAGAATATAGAAAGGCCGGCTAAACTAAAGGAAGGTAG
GTCCTCCAGCACCATCCGGTCCCGAGGGCAGGACATAGAATGAATCAAAGGAGGCTCCTTTCGTC
GCTACTTTGATTCCATTCAAAAGGTAACGTAACAGAGATAAGGGAATTTCGGATTCGGATGCGGA
CTATATCTCATTCGCGCTGCTCATGAACAGGGACGCTCGTAAAGATCAAGATGCAGTCATTAGGA
GAGATAGGTACTATCATTGTATTAAAGAGTATCGCCTACGGCTTGCGCAAGACTCGAAGTCATTA
GGTGTATCTAGATATTGTATTGTATCGCCGTAGGCTTGCCGTAGCAGTCAATAGAGACTAGTCTC
TCCTAAAGACTAGTCTCTCCTGCTAGAAAGACCTACAGTCAATAG
Right flanking sequence: Indices 309942 -- 310441
CGTTTTGACTTCATTCTAAATGTAAACTCATGAACATCGCTCTATTTCTCTTTTAAGAGAATGTC
TCAGTTACCCTTTATCTTATCATTCTTATCTGTATTCCACCATTCTTATCTTCAAACACTTTCTC
AAAAAAAGACTTCACCATCTTGATCTACTTATCTGCTACTCCGAATCATACCATCATGATGACTC
TACTTCACCATCATGATATTCTACTCTACTTCACCATCTTGATCTACTTACCTTATTCTACTTCC
CTATTATATTACATTACTAAAATAAGTAGGCTTGCGTTACGTTATAAGTTATAAGTAGGCTTGCG
TTACGTTATAAGTTATAAGTAGGCGGCTATAATAGAGCTATAAAGTAGGCCGGCCGAGAGCTTGG
TAAGCAAGCTACCTTCTCTTCCATCTCTGCCCCGCTTCCATGTGGGCAGAGACCCCTGTAGAGAA
TGAAGAGGGGCCAAGGATCGTCCTCTCAACAGTGCTTCTCGAGGC
Found at i:310146 original size:22 final size:21
Alignment explanation
Indices: 310121--310161 Score: 64
Period size: 22 Copynumber: 1.9 Consensus size: 21
310111 TCCGAATCAT
310121 ACCATCATGATGACTCTACTTC
1 ACCATCATGAT-ACTCTACTTC
*
310143 ACCATCATGATATTCTACT
1 ACCATCATGATACTCTACT
310162 CTACTTCACC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.29, C:0.29, G:0.07, T:0.34
Consensus pattern (21 bp):
ACCATCATGATACTCTACTTC
Left flanking sequence: Indices 309621 -- 310120
GTAACGTAACAGAGATAAGGGAATTTCGGATTCGGATGCGGACTATATCTCATTCGCGCTGCTCA
TGAACAGGGACGCTCGTAAAGATCAAGATGCAGTCATTAGGAGAGATAGGTACTATCATTGTATT
AAAGAGTATCGCCTACGGCTTGCGCAAGACTCGAAGTCATTAGGTGTATCTAGATATTGTATTGT
ATCGCCGTAGGCTTGCCGTAGCAGTCAATAGAGACTAGTCTCTCCTAAAGACTAGTCTCTCCTGC
TAGAAAGACCTACAGTCAATAGAGACTAGTCTCTCCTAAAGACTAGTCTCTCCTAAAGACTCGTT
TTGACTTCATTCTAAATGTAAACTCATGAACATCGCTCTATTTCTCTTTTAAGAGAATGTCTCAG
TTACCCTTTATCTTATCATTCTTATCTGTATTCCACCATTCTTATCTTCAAACACTTTCTCAAAA
AAAGACTTCACCATCTTGATCTACTTATCTGCTACTCCGAATCAT
Right flanking sequence: Indices 310162 -- 310661
CTACTTCACCATCTTGATCTACTTACCTTATTCTACTTCCCTATTATATTACATTACTAAAATAA
GTAGGCTTGCGTTACGTTATAAGTTATAAGTAGGCTTGCGTTACGTTATAAGTTATAAGTAGGCG
GCTATAATAGAGCTATAAAGTAGGCCGGCCGAGAGCTTGGTAAGCAAGCTACCTTCTCTTCCATC
TCTGCCCCGCTTCCATGTGGGCAGAGACCCCTGTAGAGAATGAAGAGGGGCCAAGGATCGTCCTC
TCAACAGTGCTTCTCGAGGCTCCACTCTCCCCCCTGAATAAGTAAGGCCCCGTTAGCCTGGGCTG
GGGATAAGGAATAAGGATTGAAGCCCCCCTTAGCTCTGCCAGACACTGGACAGGGGTTAGCTCAG
TAAATGTGTAGAGCCAAGTGTAGTGTGGTGTAGTAGTAGGCACTTCTAGGCCCCTTCCCGGCTAC
TGGATCACTCCAGTGCTTCGGGTACTACGGACCCTCTGCCATCCA
Found at i:310256 original size:29 final size:29
Alignment explanation
Indices: 310223--310290 Score: 136
Period size: 29 Copynumber: 2.3 Consensus size: 29
310213 CATTACTAAA
310223 ATAAGTAGGCTTGCGTTACGTTATAAGTT
1 ATAAGTAGGCTTGCGTTACGTTATAAGTT
310252 ATAAGTAGGCTTGCGTTACGTTATAAGTT
1 ATAAGTAGGCTTGCGTTACGTTATAAGTT
310281 ATAAGTAGGC
1 ATAAGTAGGC
310291 GGCTATAATA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.29, C:0.10, G:0.25, T:0.35
Consensus pattern (29 bp):
ATAAGTAGGCTTGCGTTACGTTATAAGTT
Left flanking sequence: Indices 309723 -- 310222
TAGGAGAGATAGGTACTATCATTGTATTAAAGAGTATCGCCTACGGCTTGCGCAAGACTCGAAGT
CATTAGGTGTATCTAGATATTGTATTGTATCGCCGTAGGCTTGCCGTAGCAGTCAATAGAGACTA
GTCTCTCCTAAAGACTAGTCTCTCCTGCTAGAAAGACCTACAGTCAATAGAGACTAGTCTCTCCT
AAAGACTAGTCTCTCCTAAAGACTCGTTTTGACTTCATTCTAAATGTAAACTCATGAACATCGCT
CTATTTCTCTTTTAAGAGAATGTCTCAGTTACCCTTTATCTTATCATTCTTATCTGTATTCCACC
ATTCTTATCTTCAAACACTTTCTCAAAAAAAGACTTCACCATCTTGATCTACTTATCTGCTACTC
CGAATCATACCATCATGATGACTCTACTTCACCATCATGATATTCTACTCTACTTCACCATCTTG
ATCTACTTACCTTATTCTACTTCCCTATTATATTACATTACTAAA
Right flanking sequence: Indices 310291 -- 310790
GGCTATAATAGAGCTATAAAGTAGGCCGGCCGAGAGCTTGGTAAGCAAGCTACCTTCTCTTCCAT
CTCTGCCCCGCTTCCATGTGGGCAGAGACCCCTGTAGAGAATGAAGAGGGGCCAAGGATCGTCCT
CTCAACAGTGCTTCTCGAGGCTCCACTCTCCCCCCTGAATAAGTAAGGCCCCGTTAGCCTGGGCT
GGGGATAAGGAATAAGGATTGAAGCCCCCCTTAGCTCTGCCAGACACTGGACAGGGGTTAGCTCA
GTAAATGTGTAGAGCCAAGTGTAGTGTGGTGTAGTAGTAGGCACTTCTAGGCCCCTTCCCGGCTA
CTGGATCACTCCAGTGCTTCGGGTACTACGGACCCTCTGCCATCCATTGCAGCAGAGCCGTTTCA
TGAGCGGGGGGGGGCGCTAAGCGCAGTTCTTTGAATCAAACGTTTCCTATCTATATGAAATACTG
TAGCAAGTAGCAAGAAGCCCCAAATCCAGGATTTGGCCAGGAAAC
Found at i:329516 original size:18 final size:17
Alignment explanation
Indices: 329491--329543 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 17
329481 CAAGTTCTTA
329491 GCAAGAAGGAGCTGTTT
1 GCAAGAAGGAGCTGTTT
*
329508 CGGAAGAAGG-GCTTGTTT
1 -GCAAGAAGGAGC-TGTTT
* *
329526 GCAAGAGGGAGCTCTTT
1 GCAAGAAGGAGCTGTTT
329543 G
1 G
329544 ACATCTAACA
Statistics
Matches: 29, Mismatches: 4, Indels: 5
0.76 0.11 0.13
Matches are distributed among these distances:
17 14 0.48
18 15 0.52
ACGTcount: A:0.25, C:0.13, G:0.38, T:0.25
Consensus pattern (17 bp):
GCAAGAAGGAGCTGTTT
Left flanking sequence: Indices 328991 -- 329490
TCACTTCTTGGTGATCATCCTTTCATAGGTCTAACGGCAAACTGGAACCAGCACGCAAGGCGGGT
GCTCGTCCAACAAAGCGTCATGAAAACCAAGATGTAGGCTCGCCTCCAGGCGAGGATATCACAAT
GGAATTGAGAGTCAGAAAGAGAAATTTCCTCCCTTCTCTCTACTTTAGCATTCAATGGAGCTGAT
GGATGAGGTATGCTTCACCGACCCTTGCTTTTCATAGCCCTAGTTCGGTGCGCTAGGAAGAATAA
AAGGTGTAGTCGGAATGTCTTGGCAAGGAAGGGGTTGTTTTCAGGACCAATGCCAGGAATGATAA
CAGCCAAACATACTTTTATCGATTCCGTGCACGCCCTGAAATCGTAGACAATTCGCCCTGATGAA
GCTTCCCGCCTAACCTTGACACATCTATTAGTTAGATGCTCAGAATCGGAGTCTCCTTAAGGGAC
TAAGAGAGGGACAAATCGGATTGATGCAGAGAATACAAGTTCTTA
Right flanking sequence: Indices 329544 -- 330043
ACATCTAACAGCATCAAATCCTGAAAGCAGGACAGGAAGCATCCGAGATGTATCGAATGCCATGG
TTGGCTCTTTGATAGAAGGAGCTGCTAGCAATAAGACTTCCCTTGCTCTAGAATAGGCTGTTTGC
ACTCATAGGCTCTTAGGCAGCTATTGAATCCACAGTTTCGTAATAGAATAGGATAGGAATTCCCG
GTCTTAGCATGTTAGCATACGGAATTACCGGTGCAGGCCAACTCGGAATATAAATAGCCCTTAGT
AGGACGAGGTCAAATGGCAGGATTGAGATTGGATTTAGGAATGGAAAGACCAAATGGAAAAAAAG
AGGGCTTTTCTTAAAGGATTGGAACTAGGCCAATGCCAATGAAATCTCATCTATTGCAGCAAAGA
AAGAGGAAAGGGGCGAAGCGCTAGTTTGAATTGAAGTAGAGGAGAGCTAGAATGAGTCAATGCGC
ATTGCCAGTAAGCACTAAGCAAGCAGGTATCCGCTATCGGAAGCG
Found at i:338533 original size:17 final size:17
Alignment explanation
Indices: 338511--338544 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
338501 GACCGGGTTT
*
338511 ATGGATGAAGGAGTGGA
1 ATGGATGAAGAAGTGGA
338528 ATGGATGAAGAAGTGGA
1 ATGGATGAAGAAGTGGA
338545 TGAAGGATGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.00, G:0.44, T:0.18
Consensus pattern (17 bp):
ATGGATGAAGAAGTGGA
Left flanking sequence: Indices 338011 -- 338510
ATGAATATAGCTAGTCTCTCCTAAAGACTAGTGTATCCGTCTTTCTAGTCTCTCCTAAAGACTAG
GACTAAGCTGACTTGACTTGTTGTATAAAGCCTCTCTTCTCTTTGATAGCGGTCAGGGTTCAGAA
AGGATCTGATCGTAGCGTAGATAGAGACTGAAACCTGTGCGGGGGTAGGGGCGGATGTAGCCAAG
TGGATCAAGGCAGTGGATTGTGAATCCACCACGCGCGGGTTCAATCCCCGTCGTTCGCCCATCAC
ATCTATAAAGGATTTTCTTACGGAGACACAAGACAAACCTTTCCCAACTAGAAAGAATTTGTTCT
GCAAGAGTCAATTCATCTCTTGGCTTTCAAACGCATCCAAGCAATTGGTATCCGATTGAAACATA
GAAACCATAGATTCGCGTCGCCTACTTGGATTCCGCCCCTGTTCACTTTTTCAACATAAAGAGTC
ACCAAAGTAACCTACCAGGTTGCGGGAACGAGAGTGACCGGGTTT
Right flanking sequence: Indices 338545 -- 339044
TGAAGGATGCGTCACGACTTTCATCCTTGGTTCACTTTGCCCGATAGAAAAAGAGTTGACAAAGG
TAACCGGAGAAAAAGACTGAGGTTGTCAACTTGAGTAGTGTTTCCAAAGGGAACCGAAGGTTTCC
CGCTTAAAATCAAAAGGGAGCCGGCATGTGTGCCTTTTGACGCCCTAGAAGTAGGTCAAAAGGGC
CCTTCCCAGGAATAGTAGAAATTTGATTTTCGTTTTAGAAGTCTAAGAAAAGAAAGAGTTCTTTG
ATCACTATAAGTAGGCTTGTAGTCGTAGTAGTCGGCATTCCTACGCGCCCGCCAGAATGCCTCCT
TGGTTCGGGACGAAGCCACGCCGCCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACTTC
CCTCTTTCAACAAGCCGGTGGTGATCTCACTTTCGAAAGAGAGTCTCGACGTGGCGGTATACACG
TAGCTCTATAGCGGAGCTAGTCACTGGCTACAGCTTTCTTTCCTA
Found at i:339291 original size:3 final size:3
Alignment explanation
Indices: 339283--339309 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
339273 TCTAAATATT
339283 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
339310 TATAGTATAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Left flanking sequence: Indices 338783 -- 339282
TAAGAAAAGAAAGAGTTCTTTGATCACTATAAGTAGGCTTGTAGTCGTAGTAGTCGGCATTCCTA
CGCGCCCGCCAGAATGCCTCCTTGGTTCGGGACGAAGCCACGCCGCCGGCACATACCAGGGGGTA
GCGACTGTTTATTAAAAACTTCCCTCTTTCAACAAGCCGGTGGTGATCTCACTTTCGAAAGAGAG
TCTCGACGTGGCGGTATACACGTAGCTCTATAGCGGAGCTAGTCACTGGCTACAGCTTTCTTTCC
TACCGGACCGCCGACGAATAATAATAGGAGGGGGTGACCAACCGGAGTCGCCCTAAGGTTACGAT
CCGTTGGGTTGGTTTCCCAACCAGGATCCTATTTCCTCCAAGAGCCCTACCGATTGAGAAGGAGA
AAAAGTTGAAAACAACTGAGATCGGATCTCTCACGGAAATGGTGAGGCCCGCCGAAGAACCTAAT
GGAACTAGAAACAATTCAAAATTCACTAAACTTAATCTAAATATT
Right flanking sequence: Indices 339310 -- 339809
TATAGTATAGATTCTAGCTGCTAGAAAAGGAACATGAGGCCAATCTCGGACATGGTGTACTTGGA
CTTCCGTTACACATCAAGGTGACGGAGGTCATGGCATACAATCTCTTTTTATAGAAAGAGGAATT
CTAGTTTTCAGTTCAAAGAGAATTTATGCAACCCCTGGTATTGGGCATAAATAATATCACGAAAG
AATTGACGGACGGATTGATTCATTCTGTACCAGCCTAGCGAGGAGAAAGGTCACACTAGTAGTCC
CTATTGGAAGGGAGTCAATTCAGAGGTATGGTAAGTCATATGGGCTTGGTAAGTGCCCGCCAATT
TCAAGCTTATTGTCGTACCCGCAATGGGAAAGAAAGCCAAGGCAACCTTTCTGAAAGAGGTTCGG
AGCCCGACCTCGATGTGAATCTGTTATAGGCGATCGCAGAAAGCGGAGTCAACCCAACGACATAG
ATCGAGTGGTTTTATCAGCTCAAAGAAAAGTTCCAAGTACAGGCT
Found at i:359423 original size:24 final size:24
Alignment explanation
Indices: 359396--359449 Score: 108
Period size: 24 Copynumber: 2.2 Consensus size: 24
359386 GATCGAGACC
359396 CGGGAGCAGTAGCAAAGCTAGCAG
1 CGGGAGCAGTAGCAAAGCTAGCAG
359420 CGGGAGCAGTAGCAAAGCTAGCAG
1 CGGGAGCAGTAGCAAAGCTAGCAG
359444 CGGGAG
1 CGGGAG
359450 TCGCAGGAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.31, C:0.20, G:0.41, T:0.07
Consensus pattern (24 bp):
CGGGAGCAGTAGCAAAGCTAGCAG
Left flanking sequence: Indices 358896 -- 359395
CGGAGCCTTGTCGGTCCACCTCCGCACTCCTAACATTTGTAGCAGCATCTGTTGGGGAGGGGAGA
GCACCCACTAGCTAGGGAGATCTTGATTCCATAGGAGAGTCCTCTTCTCTTGAGGAAGTCTTTCA
TGGGAGTCCATCCCGCTCCGTGGGTTGCTGATCCGAAGCGAGCAGATTCGCCCGCCATAAGTTTA
CCTAGTTTACCCATATCCAATTGAAGCCGAAACACCCGTAGTAGTTTCCGCTTTTTTCCCGTTTA
CTCAGTTGCATCTGATCCGATCGACCGTGTCTGAGTAAATGATCCAGAGCCAGTGAATGATCAAG
CATTCGAGCTAGCAGCAGGGAAGGAAGCAACAGTGGCTAGTAGCACCCCTTTTTTCAAGAAAAGG
CGATCGAGACCCGGAAACGGAAGCAATGATAGATTCATAGGCAGGGGCATCAGAGACAGAGGCGA
GAGCATAGCCAGTGGCAAAGACAGGAGCAGCTCCTGATCGAGACC
Right flanking sequence: Indices 359450 -- 359949
TCGCAGGAAAGGCATAGGTCGCACTAGTCTTTAGGAGAGACTCGCTATATTCATTAGGTCTTTCT
AGCAGGAGAGACTAGTCTTTAGGAGAGACTAGCAAGATTCGAGTCTTGCCTACGGCAAGCCTACG
GCGATACTCGACAATATCTAGATACACCTAATGACTACGGCAAGCCTACGGCGAGTAGTACCTAT
ATCTCCTAATGAATGCTAGAAAGACCTAATAACTGCTGTCTCATTCGTATAAGGATGCAGACAAG
GAGAAAGTCTCGCTCGTCAACTGGCTCGCTTGACTTCATTCTAAATGTAAACTCATGAACAGCAT
GAGCAGGCTCGCTCAGTGCTTACGAACGAGTGGAGTGTTTACGCACAGAAGGAGCCGCCTTGTCT
ACGAAGCTTCGCTGCTCCGCCTGCCTTATTCTTTCATTCTTGAATAGGAGAGGCCTTCATCAATC
AATCACATTCCATCCCCAAGCACTTCATAACTTGCTCTGGTAAGA
Found at i:367459 original size:20 final size:20
Alignment explanation
Indices: 367434--367483 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 20
367424 GTAAACTCGC
367434 AAATAATGATGCAGACAAGG
1 AAATAATGATGCAGACAAGG
*
367454 AAATAAGGATGCAGACAAGG
1 AAATAATGATGCAGACAAGG
367474 --ATAATGATGC
1 AAATAATGATGC
367484 GAATAAGGAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
18 9 0.32
20 19 0.68
ACGTcount: A:0.48, C:0.10, G:0.26, T:0.16
Consensus pattern (20 bp):
AAATAATGATGCAGACAAGG
Left flanking sequence: Indices 366934 -- 367433
CACAAGCACCCAACCTTCCTTTTGCTCTTCCTTCGGTTTGGCTCCACGAACGCGCCACCTAGGAG
CCCTACTCATATTCAAAAGGCGCTACTTCAATTCAAGCGCAAGCCCCACTGTCAAAGTACCAAAG
TGGTTGCGGGAACGAGACGCTTTCTTTCTAGGTTTATGTATCAGATCATGATGGTTTTCTAAAGA
TAAGAATGGTTAAGTAAAGGTTAAGTACAGGCGAAAGAGGATCCGTACAGGTGAAATACTATATT
TCTAAATAGGAGATAGCTTTCTCTTTAGAAAACAAGGTTTTTATGAAGAAAAGAAAATCAAAGCC
CTATAATCAATAAGGGAATAAGGGAAAGAAGGGAAATATAGGGTTATAAAATAATGGGTTTCAAG
GAAAGGAAGAAAAGAAGGAAACGCTGTGATTGAGTTGACGAATGAATATATATATTGAGTACACT
GTTCATGAGTTTACATTGTCAATGAAGTCAAGCTCGTAAACTCGC
Right flanking sequence: Indices 367484 -- 367983
GAATAAGGATCTTGTACGGCAAGGAAATAAGGATCTTGTGGATGACACTATTTTCAATGTAAACT
CATGAACAGCACTCGCAGCTTAGTCACTCGCTCGAATGAAGTCAGCGTCACTCCCTCCTTCTCAA
TCAATATCAACAACATGTCGTGACGGACCGGCGAACGGCGAACGCTTCCAAACGACCCTCTCGAG
TTTCCGGCTGTGTTTCCTAGATTGAAGTAGCCTTTCGTCGCCCTACCCTAAGAACTATCAAACTG
CTCGCCCTACTGAAGTACCAAAGGTGCGCTCCGCCCGCTTACTAAAACATTGGCTTGCGACTGAA
GGAGGGCGCCTAGATGTTCGCTTTCCCTCCCTCAAAAGGCGACCTGCTTTCCATACAATAAGTAT
AAGTTACGCTGCCATTTTTCCAATATCATTGAATAGGGGCTAAGGTCACTCAAGTGGGAGAGCCG
TGTTATGGGTGACCTCATTGCACGGTTCAGAGAGCACTTGTGTAT
Found at i:388831 original size:15 final size:15
Alignment explanation
Indices: 388811--388840 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
388801 TGATTACCAC
388811 TACAGGACAGTACAT
1 TACAGGACAGTACAT
388826 TACAGGACAGTACAT
1 TACAGGACAGTACAT
388841 CCAACCGTCA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.40, C:0.20, G:0.20, T:0.20
Consensus pattern (15 bp):
TACAGGACAGTACAT
Left flanking sequence: Indices 388311 -- 388810
GCCCCTTCTCGAAGTAGTCGAGGGGGAAAATCCAGGAGAAAAACGAATCGGAGCATCGTCATATG
AAAAATGCTCCTGACTGGCCGGTGGTTCGAGTCGAGAAATTCCTACCATTCGACGGTTTCGGAGT
TCAATGATAAGCGGCAGGTTACGAGGATTCAAGCTCGGCTGGTGGCAGGATTTGAAATGGATCAG
GTAGGGCATCCGTTTACGGCGTGGGTGGCTTCCACAGGCTAGGGTAGGGAATCCGCATCAGCGGG
GGGAGAAGCTGCAGTTGCAGATCAAATCCACTCGACTGAATAAGCGAGGTCATCAGGTTCTTCAT
CCCATGAGCATCTCGCTCTATGGAATATGAATCTATACTACAAACAGAAGGTTCCTCCTTCCTAT
AAAAGAAAGTGCGTCTTTTGTCCCCGACTTTCCCTAGCGGTAGTCACGATCACGGCATGGCTAGC
ATGAATGCATCTCGCAGTAAACCCACTAGGAATAGTGATTACCAC
Right flanking sequence: Indices 388841 -- 389340
CCAACCGTCACCAAGTCCCCAACCGTCGAAGTTTAATGGCCTTGCCAACCTAAACGGCTTTAATA
GGAAGGGACCGTAAAAAACCCTAGTAACCTGAATGGCTGGCCTTACTAATAATAGTAGACGTAGT
CATAATGATGGACATAGCTTTGCTTTCCGGCTTTACTAGCTTTATGACTTGGCTATCGGCCTGGC
CGCCTCGTAGCTGGGAAATTGATCGTTGTGAACATGGCATTTAGTTGGTCATTTCTGATATCGAA
TGTATAGCCTTATCCCGGTCGAATCTACATCAATAACCGATGAATCATTTGGCTGGCGAATGAAT
TACTGAGATTGTTCGGGAGACATGGTCAAAGCCCGGTGAATCAACTCATGGATCAAGAAGAAGAG
TCCTCTTGTGAGTGAGAGGCTTTTCCTCCTGAAGCCAGACAAAGCAAAGGCTTTCGAAAACAGAG
TTCCGCACCAAGATATACACGAGACAGTGGTAGAAACCGGTTCGT
Found at i:389706 original size:72 final size:72
Alignment explanation
Indices: 389547--389706 Score: 293
Period size: 72 Copynumber: 2.2 Consensus size: 72
389537 CCGGGGCACC
**
389547 GGAGCAGCCCTCCGAAAATGGGGGAGGGCTGCGATTGTTTGGGATAACAATGATCCCTCAAAGCC
1 GGAGCAGCCCTCCGTTAATGGGGGAGGGCTGCGATTGTTTGGGATAACAATGATCCCTCAAAGCC
389612 CCCCAGA
66 CCCCAGA
389619 GGAGCAGCCCTCCGTTAATGGGGGAGGGCTGCGATTGTTTGGGATAACAATGATCCCTCAAAGCC
1 GGAGCAGCCCTCCGTTAATGGGGGAGGGCTGCGATTGTTTGGGATAACAATGATCCCTCAAAGCC
389684 CCCCAGA
66 CCCCAGA
*
389691 GGAGCAGCCCCCCGTT
1 GGAGCAGCCCTCCGTT
389707 GTGGATCAAC
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 85 1.00
ACGTcount: A:0.24, C:0.28, G:0.31, T:0.17
Consensus pattern (72 bp):
GGAGCAGCCCTCCGTTAATGGGGGAGGGCTGCGATTGTTTGGGATAACAATGATCCCTCAAAGCC
CCCCAGA
Left flanking sequence: Indices 389047 -- 389546
TGGGAAATTGATCGTTGTGAACATGGCATTTAGTTGGTCATTTCTGATATCGAATGTATAGCCTT
ATCCCGGTCGAATCTACATCAATAACCGATGAATCATTTGGCTGGCGAATGAATTACTGAGATTG
TTCGGGAGACATGGTCAAAGCCCGGTGAATCAACTCATGGATCAAGAAGAAGAGTCCTCTTGTGA
GTGAGAGGCTTTTCCTCCTGAAGCCAGACAAAGCAAAGGCTTTCGAAAACAGAGTTCCGCACCAA
GATATACACGAGACAGTGGTAGAAACCGGTTCGTAAAGGTGCACGCCCCTATTTGAAAACCCTAC
TCTTGAAGTACCTCCTCCGGGTGGTGGGGATAGCCCTTTCAAGGGTGTTTTTTCGGGGCCGGTGG
TCGGGAATTTGCTCATGGGCTTTGCGTATCGCCCTAGGCGATCACGAGGCCAACCTCTCCCTGGG
GCTGGGGATGGAGAAGGGCGTTTTGCCCCACCCAACCGGGGCACC
Right flanking sequence: Indices 389707 -- 390206
GTGGATCAACAGGATGTGGCGCCCGGGCTTCCACCGGCGTGCCCGCCCGTTTCCGGGCATCCTGG
CCCCTCCACCGAAGTGGAGGGCAACCCCTCTCCGACCCCTCGCGGGTCGAACCGGAATTGCCCCG
GATGGAGACAGATAAAGATGGCGGAACGTCTTGCATGGAAGGAGAAGGAGGCGATTGAAGACGCA
GAGAGGTGGAACGCCTATATGGCGAATTTCGAGGCGGGCGTCTTCGATGCCATTTCTAAGATTGC
CCGGGAAACAGACCATTCGTCGTGGGAAACCCACGGGAAACAAGCCTTTGAGAACATCCTCCAGG
CTGCTGCTAAAAGGGGCGTTCCCCACCTCTATAGAAGCCCTGAAAGCAGGGACGCCCTCCTCAGA
GATGGCACCGAAGCCGCAGACTTTAAAGAGTTTATCCGGGAGGCGGAGGCTTTAAAGAGAGAGGA
AACAGATCCCCACTTTCAATTCTTTAGAAGCCTTGATAAAGGGGG
Found at i:397563 original size:12 final size:12
Alignment explanation
Indices: 397528--397564 Score: 51
Period size: 12 Copynumber: 3.2 Consensus size: 12
397518 GCCGTACAAG
397528 ATCCTTATTCGC
1 ATCCTTATTCGC
*
397540 ATCATTA-T-GC
1 ATCCTTATTCGC
397550 ATCCTTATTCGC
1 ATCCTTATTCGC
397562 ATC
1 ATC
397565 TTTCTCTTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 4
0.78 0.07 0.15
Matches are distributed among these distances:
10 8 0.38
11 2 0.10
12 11 0.52
ACGTcount: A:0.22, C:0.30, G:0.08, T:0.41
Consensus pattern (12 bp):
ATCCTTATTCGC
Left flanking sequence: Indices 397028 -- 397527
TCACCTGCAGTCACACAAAAAACAAGGTTAGATCTGAAACTAGAAGAACTAGATGACTCAGAAAC
TAACAGAAAACTCCTGCACATAGAGAAAAGAAATAAGAAAACAGAAAGAAACGATAAGGAATGTA
GCAGCTCCCAGTGATGGTTTTCCGGCGTGTCCAGCAACTATGATCGCCCCTGTACCAAAAAATAG
GCATCGGATCTTCCGCTCCATAATGGCTAAGAACTTCATTTCATTGAGAGGAAATTTCAGCTCAT
TAGGTAAAAGGGATGAAAGGATTCTAAAAGCTGGGTTTTCATGGAAGTCTTTTGCAGCCAGACCA
GAAATACAGCAGTAGAACCAGAGAGAAAATAGAGCTCCCTGGGAGGAAGAAGAAGTGATCCGTGC
GGCAGCTCAGGGAGGAAGAAGAGAGAGCCTGGTTTTTTCGGTAGCCAAGGGGGAGCGAGACTTCA
TCCTTGTCTGCCCTTGTCTGCATCCTTATCTCTTTGCCGTACAAG
Right flanking sequence: Indices 397565 -- 398064
TTTCTCTTTACAAGCGAGACTTTCTCGATTTTCAGGATCTTAACACTTTGAAGAACTATTCTTCT
TCTTATTCTTCGAATCTTTTTATTCCATTCGAAAAACTCGCCAGAAGGTGTTCAACTCGGGCTTG
AGCCTGCCACGTCGGTTAGCTGGAATATGGACTCAACTGTACAAATCTAAAGCCTATGCCTCTGT
CCCTGCATCTGGATACGCACCCGGATATGGGTCCTGCTCCCGAATGGAAACTAGTTCCGGCTTCT
GATGCTTCTCACTCTACTAAAGCAATGCTGACCAATAACCGATGAAAGCTCGTAAGCTCTACCAT
CTTCTCTGTCTCCCGATCCCTCCCAAGCCCAGGGGAAGCTACAAAGCAATCTTCTTTCCATATCT
CGGATGAAGGGCCATGTTCTTCCTCCGCCAGTAGCTGCTAAGCGGCACAAGACCCGAACTCTGCA
TATCTAGTTTTCCCATCCGAAGAAGAAGCAACTGGAGAAGCGGAT
Found at i:406034 original size:14 final size:14
Alignment explanation
Indices: 406015--406043 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
406005 GGAATACGAA
406015 TATGGTGTATAACT
1 TATGGTGTATAACT
406029 TATGGTGTATAACT
1 TATGGTGTATAACT
406043 T
1 T
406044 TTGATTATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.07, G:0.21, T:0.45
Consensus pattern (14 bp):
TATGGTGTATAACT
Left flanking sequence: Indices 405515 -- 406014
CAGCTTGCTACGAACAAAAAAACTATGAAATGGCTGGTGCCTAATCCGTGGGGATCCGGGAGGAC
AGGACGTATTGGTCAGTCAAAGACAGCTATCTATTTCTGTCCGGGGACAATCAAATTCCCGGGGC
TTCGGCTGGTCGGGCGAAGGAAGCGCCTGACTGCTATCTGGATATCATTCTGACGGAAGGTTAGA
GTGATTATGGTATGGTACCCACCACCCTAGTCAGTAGATAGCCCGCGCTGATCAGAGGTGATACA
GCAGGTTAGTGTAGCCAATCCCGACTCGTAGCTTTTCCAATTCTCTCGAGCGATTCCATTTCTGA
TAGAAACCATTTCAGGACTTTCTATTTCGAGAGTGTCGAGGTTCTTCTTTCTTTTTTTTTTATTG
ATTTTTTATCTTTTCCCTATTACCTCTTACCGTCCCACTACTCAATTTGTTTTTGTTCGTTGCAT
CGGATTACAATTACAATTGATTGTATCCAATTGACGGAATACGAA
Right flanking sequence: Indices 406044 -- 406543
TTGATTATTCTGATACATCGACTAGTATGAAATAGCATTGATAGCCTCGACTCGTGTCCTAGCTC
GTCTGAGAGCCTCAATTGCTTGTCTCTTGCCTTCAGCTCTACTCAGGTTAGCTTCAGCTATTTCA
AGAGTTCGCTGAGCTTCTCGCGGATCAATGTCACTACCCTTCTCCGCATCATTTACTAAAATGGT
TATCTCATTATTGCCTATTCTCGCGAAACCACCCATCAGAGCCATCGTTAACCATTGGTCGTTGA
GGCGTATTCTCAGAATACCTATATCCACAGCTGTAGCAATAGGGGCATGATTGGGTAATACGCCA
ATTTGGCCACTATTAGTGGATAAAATTCTTTCTTTCACTTCTGAATCCCAAATAATTCGATTAGG
AGTCAGTACACAAAGATTTAAAGTCATTTCTTCAATTTGCTCTCTACTTCTAAGTTCATAGCCTT
CGCGGTAGCTTCATCGATGTTACCTACCAAATAAAAGGCCTGCTC
Found at i:408618 original size:58 final size:58
Alignment explanation
Indices: 408528--408643 Score: 232
Period size: 58 Copynumber: 2.0 Consensus size: 58
408518 TCGATAGAAG
408528 GATTCCGTAGTTCGGGACAAGGAATGATCTCAACTCGGCTACCTTCGTGGGCTCCTCC
1 GATTCCGTAGTTCGGGACAAGGAATGATCTCAACTCGGCTACCTTCGTGGGCTCCTCC
408586 GATTCCGTAGTTCGGGACAAGGAATGATCTCAACTCGGCTACCTTCGTGGGCTCCTCC
1 GATTCCGTAGTTCGGGACAAGGAATGATCTCAACTCGGCTACCTTCGTGGGCTCCTCC
408644 CATTACTCTA
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 58 1.00
ACGTcount: A:0.19, C:0.29, G:0.26, T:0.26
Consensus pattern (58 bp):
GATTCCGTAGTTCGGGACAAGGAATGATCTCAACTCGGCTACCTTCGTGGGCTCCTCC
Left flanking sequence: Indices 408028 -- 408527
TAATTCAATAAGAAATGGGGGTTAGCACTCGATTTAGTTGGTATTAAAGAATCAAATCCAATTCA
ATCGTTTACTTAAATGAATAATTCAATAAGTGAATTTGCAAGTTCAACCAACCTTTTTCGAAATA
TCGAATAGATGAATAAGAATCATGAGGAAGTGTTTTATTTATCTATCATTATAGACAATCCCATC
CAGATTATAGAATCTATGGAATTCGAACCTGAACTCTATTTATGATTCATTATTTCTATATCATT
GGCCGTTGTCCCTTACACGAGGCTCAAGAGACCTTAGCTGACCAGTAGAGGCACGAAGTCCTAAA
CCAAAGCCGGAGAGAGCTAGGAGTTAACACTCGCTGAACCGTGAAAGGGCTGTCTTTCATTGACT
AGATTCCAGCAGACAGCGATCTTCTTACTTTTAAAGCAAAGTTTCACGGGGAAATCACACGAGGA
CCAGAAAACGCATTCTAACGCTCTAAAGAGCCCGATCGATAGAAG
Right flanking sequence: Indices 408644 -- 409143
CATTACTCTATGGCCTGAGCCTTCTCATTGGCCATGAAAATGGTCCCCTAACCCTCGAGCTGCCC
TAAGGTTTGTAGCTTCCCTTTCTTTTCTTTGCTTTCTAAATCACAGGATTCGGGCCTAAAAAGCA
CTGCTTTCCAGAGGTTTTTATTCACTAACTGACTGGCAAAACCCAATATCGCTATCCGAATCCGA
GATTTCTTTTGTAATACGGCTAACCTGCCATTACCGCCGATCGTACTCGGCTCGTGTCGTGCTTG
GTGCCATCCAACTTCTCTCTTAACCCGTTACCGTCCCATAGACGGAGATATGCTCCTGGCAATGG
AAGTCTATATGCAACTGGAGAATCTTGTGTTATGAATCTGGAAATTGAATATATATCCCTATCCT
TGGCCTGGTATGGTATGGTGAGCACGTATGGCTAATTCGACACCTGAAGCAAGACTAGGTCTTGT
TCTAAGTCTAGGTCCATGGAGGTAAACTCATCGGCTTATGGACCA
Found at i:417614 original size:20 final size:19
Alignment explanation
Indices: 417585--417624 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 19
417575 GAGCGAGACA
417585 AGAACGAGGATTCAAAGCG
1 AGAACGAGGATTCAAAGCG
*
417604 AGAAGCGAGGATTCAACGCG
1 AGAA-CGAGGATTCAAAGCG
417624 A
1 A
417625 ACGGTAAGAG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 4 0.21
20 15 0.79
ACGTcount: A:0.40, C:0.17, G:0.33, T:0.10
Consensus pattern (19 bp):
AGAACGAGGATTCAAAGCG
Left flanking sequence: Indices 417085 -- 417584
AGTAGCGAGCTAACAGGTCTGTGTTAAGGGATTAGGTTAATGACTGAAGACCGCTTATTGGATCT
TTAATACACCACTATTGATGAGGGGAGTTCAGAAAGGGCTAGAAGGAATCAATCATTACAGGAAG
CGGACCGAGATAGAGTGTCCCTAGCTGCGGCTTTCACTTCTGTTCACACCCTAGTGGTCATTGTG
ACCTCGTTACCCGCCCCTATCTTTCCTCACTATTGCTGCTTTCTACGTTGGCGATCCTTCTTTTC
AACCGATACGCTTTCCTTTCTACCAAGACTACAACCGAAGGAACGGCTTTCTTGACTTACCGCTT
GCAGGGAGAACACCGACTAGACAGAGATATGTTTTTTCAATTCCACTGTGAAGACGGCCCTGCTT
GTCATTCATCCAGTTTAGACCGCGATCGCCAGGGCCCTTTGCAATCCCTTCGCTAACGCTCCTTT
GCCAACACTTACCAACACTAGAGAGAGTCAGACAAGAGCGAGACA
Right flanking sequence: Indices 417625 -- 418124
ACGGTAAGAGCTCTATAAACTCTGTTTCTTGCTCTTTTTTTTATAATAGCTATAGCTACAGTAAG
AGTTCTATTTTCTCTCTTGTCTTGCCAGGACAAGCGAGCGAGTTTACGAGCGAGACTTTCTCCTT
ATTTCCTTGTCTGCATCCTTTATTGTCATGTAATAAATAAATAAAGGTAGGGAAAATAATCAAAA
TAAAGAAGGGAATAATAATCGAATTATGGGAAGAAAGAAGGTCAATATATTAGAAGTAGCGTAGC
AGCACTTTGGATGTATATGTATATATAGGGTTTGATGTTTCAATGTAAGTCAACGTGTCTGTACT
CGGAGGAGACTGTGTAACGGCTCGAATGGTTTCATGGTTGGAAGGTAGAGTGAGTCTGGGGAGGC
CCGGATGAATGATTGGGTCAGACTATCTGGTAGAGCTCGAGAAGTCCAACGCGGGCGTGGTTTCA
GATTGACCAAGTGACGAGGGCCGGATTGTAGGAAGTGGGTGATAC
Found at i:417821 original size:24 final size:24
Alignment explanation
Indices: 417793--417839 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
417783 TGTAATAAAT
*
417793 AAATAAAGGTAGGGAA-AATAATCA
1 AAATAAA-GAAGGGAATAATAATCA
417817 AAATAAAGAAGGGAATAATAATC
1 AAATAAAGAAGGGAATAATAATC
417840 GAATTATGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 7 0.33
24 14 0.67
ACGTcount: A:0.60, C:0.04, G:0.19, T:0.17
Consensus pattern (24 bp):
AAATAAAGAAGGGAATAATAATCA
Left flanking sequence: Indices 417293 -- 417792
CCCCTATCTTTCCTCACTATTGCTGCTTTCTACGTTGGCGATCCTTCTTTTCAACCGATACGCTT
TCCTTTCTACCAAGACTACAACCGAAGGAACGGCTTTCTTGACTTACCGCTTGCAGGGAGAACAC
CGACTAGACAGAGATATGTTTTTTCAATTCCACTGTGAAGACGGCCCTGCTTGTCATTCATCCAG
TTTAGACCGCGATCGCCAGGGCCCTTTGCAATCCCTTCGCTAACGCTCCTTTGCCAACACTTACC
AACACTAGAGAGAGTCAGACAAGAGCGAGACAAGAACGAGGATTCAAAGCGAGAAGCGAGGATTC
AACGCGAACGGTAAGAGCTCTATAAACTCTGTTTCTTGCTCTTTTTTTTATAATAGCTATAGCTA
CAGTAAGAGTTCTATTTTCTCTCTTGTCTTGCCAGGACAAGCGAGCGAGTTTACGAGCGAGACTT
TCTCCTTATTTCCTTGTCTGCATCCTTTATTGTCATGTAATAAAT
Right flanking sequence: Indices 417840 -- 418339
GAATTATGGGAAGAAAGAAGGTCAATATATTAGAAGTAGCGTAGCAGCACTTTGGATGTATATGT
ATATATAGGGTTTGATGTTTCAATGTAAGTCAACGTGTCTGTACTCGGAGGAGACTGTGTAACGG
CTCGAATGGTTTCATGGTTGGAAGGTAGAGTGAGTCTGGGGAGGCCCGGATGAATGATTGGGTCA
GACTATCTGGTAGAGCTCGAGAAGTCCAACGCGGGCGTGGTTTCAGATTGACCAAGTGACGAGGG
CCGGATTGTAGGAAGTGGGTGATACGATAGGAAAGGAGCCGAGATTTGGCTAAGTAAGGAATCAA
CTACTTAGTCTCGTATCCAATTTGACTAAGTGAGGCCACTACTACGAAGTAGCGCGGATACGATA
GCTTTCTTCAAAGCAAAGAGGGTCGCAAGCTTTTCAAACGTAAGGCGGTACGGACAACTACGAAG
TAGAGGCCAAGGGGGCTGGGCTGTGCGATAGAAGTCATAAGATAG
Found at i:425404 original size:9 final size:9
Alignment explanation
Indices: 425390--425414 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
425380 TCCGAATTCG
425390 CTCCTCCTT
1 CTCCTCCTT
425399 CTCCTCCTT
1 CTCCTCCTT
425408 CTCCTCC
1 CTCCTCC
425415 AAGAAAAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.00, C:0.60, G:0.00, T:0.40
Consensus pattern (9 bp):
CTCCTCCTT
Left flanking sequence: Indices 424890 -- 425389
ATAACTTGGGTTTAGGGTTGGATCATTCAGGATGTCACCAATAAGGTCCCTTTCCCTCGGAGCCC
GCCCCCCCGTTTCTGAGGGAACCGCTTCGTTCGAAGCGGTCGCTACAATAGAAGAATTATCTGGC
ACTGGTGGTGGATTGAACCCGCCATTCATGCCTCCCAACCCACTACCCCCCCCGGGGTAGAACGG
CGCGACCGCCCTGCTCAGCTCATCGAACACGAAAAGAAAGCCCTTTCTAACCATATAGGTTAAAA
GGAAAAGAAAGAGTAATTTGACCACTGAAAAAACAAAAAATCGTAGTGATTTTGATTTTGGAAGT
CGTCGAAGCAGGGGGAGTCGAAACATGATCGAATCCTTCGGTCCTAGACCGACTCCTGATAAGGA
GAAAAAAAGATCTAACTTGATCACAGTTAGAGATGGGAACGACTTTTGACGGCTTTTTTTTCTCT
CTCTCATTGTCTATCTCGATCTCATATGAATCCATTCCGAATTCG
Right flanking sequence: Indices 425415 -- 425914
AAGAAAAGATATCCTCGTTGGTCCTTATGATACCTGTCCTCGGTAAGATCAGAGGTTCGGCTTGC
TTCTCCCCCACCCTTTTTGCTTGCGTTCCAATTGGGGCCCGTCAGATTTTGGAGTTTTTTCTCCT
CCAACCCACTTGTATAGAGGCCTATACCTAGCCGCCTATAAGAGCAGGGGGGCCTCGAAAGAGAT
CAAGCGGGAGTCTCAGTCAGAATCACTCTACTGTGCCGCCGATCCATTGATAAAGGACTCTCCCT
CTTTTTTTCTACGCTTCTAATGAAGCGATTCAACAATCCTTGCTATGTCTTTACGTAGATCGGCG
TCTAGTTTGTTAATGTCATTGCCAGCCTCCATTATTCTTCTATGTAGATCCCGTGCCATCAAGAT
CTTGCCCGATGATATCACATTCATCAAGAGAAGGAGAAGGACAGAATGGACACTTTTTTCTTCCC
CTTTCCGTTTTATTTTAGTCTTCATTTCATCTATTTCCATTAGTC
Found at i:431083 original size:22 final size:22
Alignment explanation
Indices: 431055--431096 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
431045 TAAGCACAAC
*
431055 ACTAGCGTTCGTTCCGATATCG
1 ACTAGCGTGCGTTCCGATATCG
431077 ACTAGCGTGCGTTCCGATAT
1 ACTAGCGTGCGTTCCGATAT
431097 TGGCCGCCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.19, C:0.26, G:0.24, T:0.31
Consensus pattern (22 bp):
ACTAGCGTGCGTTCCGATATCG
Left flanking sequence: Indices 430555 -- 431054
GTTATCTCCGACTCCCACTGCCAGGGGTGGGTTAGGGGATAAGAAGGGCATATCTTCCAAGTTTA
TCGATCCCGCTCTCCCCACTCGCAATCGGATTTTTGAGACAATGCTGTCGCTCTCGCAGTATTAT
CCGATAGTAAGATAGTATTGAGAATCAGGGGCTGTGCCCGTAAGTAAGCTATTGAATCTTCCAAC
CCCCTCAGAGTCTTTCGCATCTTTCTGTGTGGAAGAAAACTTGCTCACAACACAAATAGTCATCT
TCTTCGGATCCGAACCTTCACCTTCTAAGGCTTCTACCCTTTGATTTTCTCGATTTATCAATGCA
TTAGCACCGTTTAGGCCGTTCCCACCCGAATAATAGAATAGAAAAAGAATAGGGGTTCATTTCTC
AATGAACATTGCCTTCTTACCCCCACCCAAAGCAAGACACTTTCTCTTTGATAAGATGATGCGGG
CGGATGAATGAGGTAAATGAAGGTACGACATGTGTTAAGCACAAC
Right flanking sequence: Indices 431097 -- 431596
TGGCCGCCATTAGAGCGTCCAGTCCTTGTTGGTTGCTGCGATAACTCCGCTCGCTGAACGGAGGG
AGAAGGAAACGAAACTGTCTCCTTAGACCTTAGAATGCAAATTCTTTTTTTTGGCGTGATGTAGG
AACGAAAACGAAATGGTTGGGAGGGAAAGAGGAGATAGCAAGCTTGACGCGCCCTCCCTTCGGCC
CGCACCCCTGTTCCAAAGCGACCAGATTCTCCGGCCTGATCTTTTGTCCCCTTCCCGCGGGGGGT
GCCACTGAACTACCGAAGTGGCATTCGAGGAGGGAGCTATTCCTATTCGGAGGGATTGATTTGCC
AAAACAAGTCCATTTTCTTTTATGCTCTGGCCGGTGGCCCTACAGTCGACCCTTTCGAGATGAAA
ATACTCATAAGGTTATTTAGAGCTCTCCCGCAAGCAAGGGGGAGGAGGGGTAGAGGGGGAGAAAT
AACCACTCGACTCTCGGGAGAGGACAGGGGTTGTCCGGTTTTACC
Found at i:440464 original size:27 final size:27
Alignment explanation
Indices: 440426--440477 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
440416 AATGTGTTGA
*
440426 CTCTACCATCTCTACCAGCTCTACTGG
1 CTCTACCATCTCTACCAGCTATACTGG
*
440453 CTCTATCATCTCTACCAGCTATACT
1 CTCTACCATCTCTACCAGCTATACT
440478 ATCTTCATTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.21, C:0.38, G:0.08, T:0.33
Consensus pattern (27 bp):
CTCTACCATCTCTACCAGCTATACTGG
Left flanking sequence: Indices 439926 -- 440425
TGAAAGAGTGCCCTTAGTCAGTTCTGGGTCAAGGGTACTATGACTAGTTTGACCATATAGTTTGA
GGGGACTACAGGACAAGGTCGACTGGTTCTGGAGCTTCACAGTAGAGAGGCTGACCATATCAAAA
GAAGAAAGAGGAAATTCAGTTCAAATCTATCGGCTCTATCGGTCAACGCTTTGATGGCTAAACCT
TTCTTCTTAGGGAGAGACCTTTCTTGCGCTCTAGGTTTGCTTAGCCAAAGACAAGAAGGTGAAGG
AAGAGGATTGCCATCCATGGACAGATCCAGAGTGGATTCGTTTACCGCTCCGTGGGCCTTCTGAG
AAGTTATGATACCACCACGACCCTTAACGAACTGGCTTTCTCGAATAGATCGTGTTCTTCAAGCC
ACATGTAGGTTCTGGACAATTGTCCCAACCTTGGCTCCTTTATCCAAATGGCCGGTTCTCCAATC
AAAGAGGAGGAGTGCCTTTCCCTTGAGATCCAATCAATGTGTTGA
Right flanking sequence: Indices 440478 -- 440977
ATCTTCATTGTTCTAGTCAGAGCAGCATAGGTAGCACGAGTTGCCCTACGCTATAAGGGCTGCAC
TAGCTTCACCAGTTGTCGGAGCAGCTGCCGTAGCAGCCGTGGATTCAATGAATGTCTTTCTCTGT
CGTAGCCTCATAGGTCTCAATTGTATCGAAGCAGCCTCAGTAGGGTATCTATACATGTCTTTCTC
TGTCGGTTGTTTTGCTTCACGAGCTTCAGTGCTTCAAGAGAGGATAGCTTGATTGGATATCTTAA
CTTCATTGTCTTGATTGTATGGGATACAAATACATCCACTCAATACCAAGGTAAGGGAGCGAGCG
AAGTCGGTCTGCTTGGTTGGTATCCCGATAAGTAGTCTTTCTCCGCGTTAGCATATAAAGACGAG
GCTTTTTTCCGTATGCTCACTGATTGGTCGGAACCATACGGTGCGGTTTGTCAGTCAAAGTTCCA
GTGGCCGTACGAGGATGTCGTTTCAAGTAGGAGCTAGCTCAGTCT
Found at i:467513 original size:18 final size:18
Alignment explanation
Indices: 467492--467527 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
467482 AGGGTCGGGC
467492 CTCAACCAATCTACTTAT
1 CTCAACCAATCTACTTAT
*
467510 CTCAACCGATCTACTTAT
1 CTCAACCAATCTACTTAT
467528 AAGGGGAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.33, G:0.03, T:0.33
Consensus pattern (18 bp):
CTCAACCAATCTACTTAT
Left flanking sequence: Indices 466992 -- 467491
TCCTGTATCGCTGTTGTCGAGCTCCAGCCCGATCCCTCTCGTACTTGGTGTTCCCCGATCCTGGG
CCTTCCCCCTCTGTTTCTGTTCGTCCCGGGATGGGATAGAGCCTTGTACCCTTTCACTAAAGGGA
CGGTTCCCGAGCTTGGCCGCACCAAATCCTGGAAGTGGCACCGCTTTGGCGATTGGCAAGACATA
TCCGAGGAGCGCTGCCTGAACGAAGCGTGGGCGTAAAGCATCAAGTGGAGGCGCCGAATCGTTGC
AAGAGGGGGGTACTAAGCGGGATCGACCGGTCAAAGCCAAGGGAAGACGAGCTGGCCAAAAGAAA
AGGCATAGGGCCAAGGCTGCGCTGGCAGGCTCATCTCACTTATTGTGTGCTTTTATGGCCATCAA
GGGAAAGTGCACTTTAGCTCGATTCCGTTTCAACAACGTGTTTGTTTCCAAACCACCGCTCAGCC
CCCTAAAACTATGGCATCAAGGTCGGCAACCCCCAAGGGTCGGGC
Right flanking sequence: Indices 467528 -- 468027
AAGGGGAAAGCCACGAATCTCGGGGAAACACTTCTTATAATATAAGAAATAGGTGTATCCTAGAA
ACACGGGCTAGAGTAAGCGCCAAGCGCTGGCCCATTAGTGGGTTCAATTCCAGCTTGCCTTTCAT
TTTTCATTTAAAGAGTAGTCTCGAGCCGCGCTCTTCTGCCATGCGAAGGGAAGATCAGATTGAAC
GGCTAGCGAACTCAACCCTTGCGGCAAGAAAACGACGAAATAGCTCATAGCCCGGGTGTGGCTCC
CCTTTATTACTTCTCTTACTTATTATTTATGGGATCCCCCAGGGCCCCCTTTGGTCCGAAATAGC
CGTACGCACTCCTCCATATCCCACTCTGGAGGTAGGGCCCCAGAATCCTCTCTTTTTTGTTGAGT
GGAAGTAGGAATGGAGTGGCTCATGCCAGACCGGAGAGATCATCCTACTTATCAGCTAGTTATCG
GCTAGCTCAATCGCAAATCGGGCATCCCCATGATATATTCAGCCA
Found at i:475200 original size:5 final size:5
Alignment explanation
Indices: 475186--475345 Score: 194
Period size: 5 Copynumber: 32.0 Consensus size: 5
475176 TTATTATATA
* * * * * *
475186 AGTAT AGTAT TGTAT AGTAT TGTAT TGTAT TGTAT TGTAT TGTAT AGTAT
1 AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT
* * * *
475236 AGTAT AGTAT TGTAT TGTAT AGTAT TGTAT AGTAT AGTAT TGTAT AGTAT
1 AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT
* * *
475286 AGTAT TGTAT AGTAT AGTAT TGTAT AGTAT AGTAT AGTAT AGTAT AGTTT
1 AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT AGTAT
*
475336 GGTAT AGTAT
1 AGTAT AGTAT
475346 GGTCTAGTCT
Statistics
Matches: 137, Mismatches: 18, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
5 137 1.00
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (5 bp):
AGTAT
Left flanking sequence: Indices 474686 -- 475185
AATCAAAGCAATAGCCCGGGGTCGATTGGTTCGAGGAAGGACGAGAGGGATACACACTAAAGGGC
TAATCCGTAGAGAATAGATTATGGCTTCCTACTCCTGGGTGGGAATAAGAAGTATGGGAAGAAGG
ATGCGCATTTTTTTGTTGAAAAGGGATTAGAGAATTTCAAGATCAAGATATTGATCAATCCATTT
TGGATTGTTTGATGCTAGCCCAGACCAGGCTTTAACTAACACTGATAGACTCACTAACTACAGAT
AGAGCCTTCCTTCCCTACTTAGACAGAGAGAGGGGCATGGAAGGAAGGCCGAAGGGTGAACGAAT
CCACAGGTTCTGGAACTGGAATCGGATCTGTATCCGGCTATAGGGGCTGGAACTGGAGCTAGAAC
TTCGGAAGCCCCGACTTCCGATGGATATGCGACTGAAACTACTAGCTCGTTCCTGCTTTCCCCGA
TAAACGATTGATCGATCCAAGGTCACCCTGTTTAATTATTATATA
Right flanking sequence: Indices 475346 -- 475845
GGTCTAGTCTTTCCAATGCCTCTTTCCTTGCCAACGCACGCCACTAGGAGAGTCAGCAAGCTACC
TTGCTTGCATTCTAGAAGCGGTAGCTTCCGCGCCAGAAAAGAGGCCTCCTTCCCTCACCCTTCCT
GCCTGCTGAAATGGATGTGAATGATCGTGACAGCTCTTCAAATCCTATTCAGTCTGATTATCTAT
GTCATTGAAAGAAATCCGTTCTGTCTCTGTTTTCTTTTCGGATTCCGAGGGCCGATCCTAACATC
ATTTATGAGGAGCCGGACGACGAAGAGGCAGATCCCGATTCCGACGCCGAAGCCTCCTCCTCAGA
TACAGATGTATCCGACGCGACTCTCCCGGTGTCAGGATCGGCGAAGAGGCGGAGATGATCGACGA
GGAAGCCCGCTCCGGCAGAGGAAGGGGAAGATGTAAAGGCCCCGGTCAGTCGGTCCCCCGGAGGG
AACGAGAGATCGGCGAGTGAACCCCGGTCGCCTCAGTTGTAGCCG
Found at i:475210 original size:15 final size:15
Alignment explanation
Indices: 475187--475345 Score: 221
Period size: 15 Copynumber: 10.6 Consensus size: 15
475177 TATTATATAA
* *
475187 GTATAGTATTGTATA
1 GTATAGTATAGTATT
* *
475202 GTATTGTATTGTATT
1 GTATAGTATAGTATT
* * *
475217 GTATTGTATTGTATA
1 GTATAGTATAGTATT
475232 GTATAGTATAGTATT
1 GTATAGTATAGTATT
*
475247 GTATTGTATAGTATT
1 GTATAGTATAGTATT
475262 GTATAGTATAGTATT
1 GTATAGTATAGTATT
475277 GTATAGTATAGTATT
1 GTATAGTATAGTATT
475292 GTATAGTATAGTATT
1 GTATAGTATAGTATT
*
475307 GTATAGTATAGTATA
1 GTATAGTATAGTATT
475322 GTATAGTATAGT-TT
1 GTATAGTATAGTATT
475336 GGTATAGTAT
1 -GTATAGTAT
475346 GGTCTAGTCT
Statistics
Matches: 133, Mismatches: 10, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
14 1 0.01
15 132 0.99
ACGTcount: A:0.31, C:0.00, G:0.21, T:0.48
Consensus pattern (15 bp):
GTATAGTATAGTATT
Left flanking sequence: Indices 474687 -- 475186
ATCAAAGCAATAGCCCGGGGTCGATTGGTTCGAGGAAGGACGAGAGGGATACACACTAAAGGGCT
AATCCGTAGAGAATAGATTATGGCTTCCTACTCCTGGGTGGGAATAAGAAGTATGGGAAGAAGGA
TGCGCATTTTTTTGTTGAAAAGGGATTAGAGAATTTCAAGATCAAGATATTGATCAATCCATTTT
GGATTGTTTGATGCTAGCCCAGACCAGGCTTTAACTAACACTGATAGACTCACTAACTACAGATA
GAGCCTTCCTTCCCTACTTAGACAGAGAGAGGGGCATGGAAGGAAGGCCGAAGGGTGAACGAATC
CACAGGTTCTGGAACTGGAATCGGATCTGTATCCGGCTATAGGGGCTGGAACTGGAGCTAGAACT
TCGGAAGCCCCGACTTCCGATGGATATGCGACTGAAACTACTAGCTCGTTCCTGCTTTCCCCGAT
AAACGATTGATCGATCCAAGGTCACCCTGTTTAATTATTATATAA
Right flanking sequence: Indices 475346 -- 475845
GGTCTAGTCTTTCCAATGCCTCTTTCCTTGCCAACGCACGCCACTAGGAGAGTCAGCAAGCTACC
TTGCTTGCATTCTAGAAGCGGTAGCTTCCGCGCCAGAAAAGAGGCCTCCTTCCCTCACCCTTCCT
GCCTGCTGAAATGGATGTGAATGATCGTGACAGCTCTTCAAATCCTATTCAGTCTGATTATCTAT
GTCATTGAAAGAAATCCGTTCTGTCTCTGTTTTCTTTTCGGATTCCGAGGGCCGATCCTAACATC
ATTTATGAGGAGCCGGACGACGAAGAGGCAGATCCCGATTCCGACGCCGAAGCCTCCTCCTCAGA
TACAGATGTATCCGACGCGACTCTCCCGGTGTCAGGATCGGCGAAGAGGCGGAGATGATCGACGA
GGAAGCCCGCTCCGGCAGAGGAAGGGGAAGATGTAAAGGCCCCGGTCAGTCGGTCCCCCGGAGGG
AACGAGAGATCGGCGAGTGAACCCCGGTCGCCTCAGTTGTAGCCG
Found at i:479173 original size:22 final size:22
Alignment explanation
Indices: 479141--479186 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
479131 TGTCGTCCAG
*
479141 CGGAGCTTAGAAGAAGGTTACT
1 CGGAGCCTAGAAGAAGGTTACT
479163 CGGAGCCTAGAAGAAGGTTACT
1 CGGAGCCTAGAAGAAGGTTACT
479185 CG
1 CG
479187 CGCAGACAGC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.33, T:0.20
Consensus pattern (22 bp):
CGGAGCCTAGAAGAAGGTTACT
Left flanking sequence: Indices 478641 -- 479140
TCACTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGGACTCATTCTGACTGAAACAAGGGGTGG
GTCTTTACCAACTTCCAAATCTTGGATTTTAGGGAAGAAAAAAGAGGGGCAGGGCACTCTTCATT
CTTCATTCGAAACTAATGAATGTCGGGTCGGGGGTTTCTGCCTGAAACTAAAAAAGGGGAGTTGG
GTAAAGCAAACTCCCTCCTTGGACGAGCACTTCGGACGTAGAACCGGGTTGCGCTGCTTGATGCT
CCGATCGAAAACAAATCAGTGGGGCCATGCCGGTACGACAGAATATGCGTTAGAAAGGTCAATCC
CTAACGCTGTCCCCTACGAAACCAAAAACCGGGCCGAACTTCTAAAAAGCCCGCCCGCTTCCATA
GAACAATATCGTGGCAACGTAGACCTAAGTGGGAATATTGGATCCTGGGGAACCATCACAAGTAC
GGCCGGCCTAGGCCTATATTTGAACGAGAATGCCGTGTCGTCCAG
Right flanking sequence: Indices 479187 -- 479686
CGCAGACAGCTGACTCCTTTTCAATAGAAAGGAATAGCCAAACCAACCAGCTGGCTGGTCAATCT
CAGAGATCTTATCGGCCGGCAAACCGGAGACGGACGACCGCGGTCCCGACCTTACCAGCACCGGA
GGTTTACTAATCAATGAACCCCCGAAACCTACTTTCTTTTCTGACAAAGTCAACCGAGCGAGTGA
GTCTACGAGTTTTACTAAACCATTTTGACTTGAACAAACCTTGTAGATATAGAATGTATGGTTTT
ATCTTATAAGATAGTACTAAACCATTCTTATCTGTAGAAAACCATTCTTATCTTATAAGATAAAA
CCATGTAGATTGTAGATAACCATTCTTTGAACTAAACCATTTTCTCTAAAAAAACCTTGTTTTCT
AAAGATAAAAATGGTTTAGTTCATGGTTGACTTCTATGAAAACCGAGCGAACGGCTGTTCATGAG
TTGACGAATGAAGCTTATTACGCTGTTCATGAGTTGACGAATCAA
Found at i:479667 original size:33 final size:33
Alignment explanation
Indices: 479630--479718 Score: 160
Period size: 33 Copynumber: 2.7 Consensus size: 33
479620 CGAGCGAACG
479630 GCTGTTCATGAGTTGACGAATGAAGCTTATTAC
1 GCTGTTCATGAGTTGACGAATGAAGCTTATTAC
*
479663 GCTGTTCATGAGTTGACGAATCAAGCTTATTAC
1 GCTGTTCATGAGTTGACGAATGAAGCTTATTAC
*
479696 GCTGTTCATGAGTTTACGAATGA
1 GCTGTTCATGAGTTGACGAATGA
479719 TATATGAAGT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.34
Consensus pattern (33 bp):
GCTGTTCATGAGTTGACGAATGAAGCTTATTAC
Left flanking sequence: Indices 479130 -- 479629
GTGTCGTCCAGCGGAGCTTAGAAGAAGGTTACTCGGAGCCTAGAAGAAGGTTACTCGCGCAGACA
GCTGACTCCTTTTCAATAGAAAGGAATAGCCAAACCAACCAGCTGGCTGGTCAATCTCAGAGATC
TTATCGGCCGGCAAACCGGAGACGGACGACCGCGGTCCCGACCTTACCAGCACCGGAGGTTTACT
AATCAATGAACCCCCGAAACCTACTTTCTTTTCTGACAAAGTCAACCGAGCGAGTGAGTCTACGA
GTTTTACTAAACCATTTTGACTTGAACAAACCTTGTAGATATAGAATGTATGGTTTTATCTTATA
AGATAGTACTAAACCATTCTTATCTGTAGAAAACCATTCTTATCTTATAAGATAAAACCATGTAG
ATTGTAGATAACCATTCTTTGAACTAAACCATTTTCTCTAAAAAAACCTTGTTTTCTAAAGATAA
AAATGGTTTAGTTCATGGTTGACTTCTATGAAAACCGAGCGAACG
Right flanking sequence: Indices 479719 -- 480218
TATATGAAGTACAAGATCCCTGTTCATGAGTTTACATTGTCAATGAAGTCAAGCGAGCGAGTTGA
CGAATGAGACTTTAGGAGAGACTAGTCTTTAGGAGAGACTCGCTATATTCATTAGGTCTTTCTAG
CAGGAGAGACTAGTCTCTATTGACTGCTACGGCAAGCCGTAGGCGATACTCTTTAATACAATGAT
AGTACCTATAAATCAGTCTTTATAGGTCTTTCTAGCTATATTCGAATCTTGCCGTAGGCAAGCCG
TAGGCGATACTCGACAATACCTAGATAGACCTAATGACTGCATCCTTATTCTCATCCTTATCTAC
CTTATTCCCTTATTGATTCTTTGACCTTTTTTTGAATCTTAAGTAGGGGGGCAAGGCAAGGAGGC
GCACGTAGGAATGCCGACCACTACATAAGCCACTAGTGGCTGAGAGAAAGCGAGCTTCAGCGAGC
AGCGAGCTCCTAAAGAGCGAGCCGAGCGCCGTAACGTCAAATAGA
Found at i:485172 original size:27 final size:21
Alignment explanation
Indices: 485030--485156 Score: 164
Period size: 21 Copynumber: 5.9 Consensus size: 21
485020 CGAAATAGAA
* *
485030 TCAATAAAAGAATCACTATTATC
1 TCAATAAATGAATCAATA-T-TC
* *
485053 ATCATTAACTGAATCAATATTC
1 -TCAATAAATGAATCAATATTC
* *
485075 TCAATAAAAGAATCAATATGC
1 TCAATAAATGAATCAATATTC
*
485096 TCATTAAATGAATCAATATTC
1 TCAATAAATGAATCAATATTC
485117 TCAATAAATGAATCAATATTC
1 TCAATAAATGAATCAATATTC
485138 TCAATAAATGAATCAATAT
1 TCAATAAATGAATCAATAT
485157 CACTCTTATC
Statistics
Matches: 91, Mismatches: 12, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
21 74 0.81
22 2 0.02
23 1 0.01
24 14 0.15
ACGTcount: A:0.47, C:0.15, G:0.06, T:0.32
Consensus pattern (21 bp):
TCAATAAATGAATCAATATTC
Left flanking sequence: Indices 484530 -- 485029
TATGAACAGCTTGAGCTCGTATAGTAGAATCAAGCTGGTCAATCAAAGTAGATGTCCTAACGATG
GGTAAATCCTGTACACAGTTGAACACACACCCTAGAACATGAATACATATAGCTTCCAGTGTATA
TGGACCAAAGAGATGAATATAAGTTAAATCGTTTTCGGAAAGGTTCTTCGTCTTTAGGTATTCCT
TAGCAGTCTTATCATTATTTTTACAAATTCATTTCATGATCATGGTCGGAAAAGTCTTAAAGACA
CTAGTGTCATCATAATGCATAGTCAGACTTTCTATTTCTAACTGTAATTTATATAAACCTTTATC
ATCATTGATAAAACCTTTATTTGTTTTAAATTTCATCAACATATTTATAACATCATTGTGATAGA
GAGATACATTAGAAGACTCTTTTTTAGAGATAGAATCTTCAATCTTTTTGTAGAATTTCTTCCAG
AACAAATCAATAGTTCGTTTCTTACTTTTTTCCTCCGAAATAGAA
Right flanking sequence: Indices 485157 -- 485656
CACTCTTATCAATAAAAGAATCAATACCAGTACCACGAGCCTCAGAGCCAGAATACGATCTCACG
AACTTAAAAGAGCCAGAATACGATGATCTCACGAACTTAAAAGAGCCAGAATACGATGATCTCAC
GAACGGTAATAGTAGTTGTAGTAGTGGCATATGAATTTTACGTGCCATGCCGAGCACGGATACTA
TGGTGGTGATAAAGTGTTTCATTCCGCGCGATTTGGATTCGAACCAACGCCGCTACCACCTCTTT
GTAGATCGCGTTCCCACATCAATTTATATTGATCCCTCTTGTCCTTCCGATTGTTGAAGTAATAA
GCTTCGTCCCTGTCCTTGTCAGTGTCAGTTCAGTAGCTAAAGCCACTCTTCGCTTTACTTGAGTA
GCTTCGCCCCTGGAGATCTATCTAGTTTCATTTCATTTCAGTTCTTCTTGCTTTAAGTTCTATTA
CATTTAGTTCAATTCCATCTCTTGGGAGGTCTCTTACCTTTCCTT
Found at i:485255 original size:33 final size:33
Alignment explanation
Indices: 485200--485290 Score: 161
Period size: 33 Copynumber: 2.8 Consensus size: 33
485190 CACGAGCCTC
485200 AGAGCCAGAATAC---GATCTCACGAACTTAAA
1 AGAGCCAGAATACGATGATCTCACGAACTTAAA
485230 AGAGCCAGAATACGATGATCTCACGAACTTAAA
1 AGAGCCAGAATACGATGATCTCACGAACTTAAA
485263 AGAGCCAGAATACGATGATCTCACGAAC
1 AGAGCCAGAATACGATGATCTCACGAAC
485291 GGTAATAGTA
Statistics
Matches: 58, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
30 13 0.22
33 45 0.78
ACGTcount: A:0.42, C:0.23, G:0.19, T:0.16
Consensus pattern (33 bp):
AGAGCCAGAATACGATGATCTCACGAACTTAAA
Left flanking sequence: Indices 484700 -- 485199
AGGTTCTTCGTCTTTAGGTATTCCTTAGCAGTCTTATCATTATTTTTACAAATTCATTTCATGAT
CATGGTCGGAAAAGTCTTAAAGACACTAGTGTCATCATAATGCATAGTCAGACTTTCTATTTCTA
ACTGTAATTTATATAAACCTTTATCATCATTGATAAAACCTTTATTTGTTTTAAATTTCATCAAC
ATATTTATAACATCATTGTGATAGAGAGATACATTAGAAGACTCTTTTTTAGAGATAGAATCTTC
AATCTTTTTGTAGAATTTCTTCCAGAACAAATCAATAGTTCGTTTCTTACTTTTTTCCTCCGAAA
TAGAATCAATAAAAGAATCACTATTATCATCATTAACTGAATCAATATTCTCAATAAAAGAATCA
ATATGCTCATTAAATGAATCAATATTCTCAATAAATGAATCAATATTCTCAATAAATGAATCAAT
ATCACTCTTATCAATAAAAGAATCAATACCAGTACCACGAGCCTC
Right flanking sequence: Indices 485291 -- 485790
GGTAATAGTAGTTGTAGTAGTGGCATATGAATTTTACGTGCCATGCCGAGCACGGATACTATGGT
GGTGATAAAGTGTTTCATTCCGCGCGATTTGGATTCGAACCAACGCCGCTACCACCTCTTTGTAG
ATCGCGTTCCCACATCAATTTATATTGATCCCTCTTGTCCTTCCGATTGTTGAAGTAATAAGCTT
CGTCCCTGTCCTTGTCAGTGTCAGTTCAGTAGCTAAAGCCACTCTTCGCTTTACTTGAGTAGCTT
CGCCCCTGGAGATCTATCTAGTTTCATTTCATTTCAGTTCTTCTTGCTTTAAGTTCTATTACATT
TAGTTCAATTCCATCTCTTGGGAGGTCTCTTACCTTTCCTTTGAAGTTGGCATTGAATAAGTTGG
CAAAGGGAAGCCGGCAGTATCTTTTTCTCAGCCAATGAGAAAGCATGTGGTGGTAAAGCCTGTGA
GAACTAGATGACTTCTTAATCCAGTTTGAAAGCCTCCAAGTCTCC
Found at i:486986 original size:6 final size:6
Alignment explanation
Indices: 486975--487005 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
486965 AGGCTGTCTT
486975 AATGGC AATGGC AATGGC AATGGC AATGGC A
1 AATGGC AATGGC AATGGC AATGGC AATGGC A
487006 GCGATTGCCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.35, C:0.16, G:0.32, T:0.16
Consensus pattern (6 bp):
AATGGC
Left flanking sequence: Indices 486475 -- 486974
ATAGGCAAGCTAGTTTGAAAAAGCAGGTATGTCAATACATTCTGGGCTTAAGCATAAGCAAAAAA
AGAGTCAATTAGAGGATCGGATCTATATCTAGAAATAAGTTATTGATATCGGTCTTTTTACAAGT
TTCCGAGTCATGAAAGACTCTCAAGGGGGTCTAGCACAAGAGAGTTATAAAAAGGCCAAGCACCC
CCTTCCCTGGTAAGATTTTCTTTTCTATTTAGCACGGAGGAATCCTGTAATATTCTAGGTAAGAG
GTATATATAATAGTTGTTTTCATCGAGAAGAGGGCATTTTTTTCTATGGATAGTAGCGAATACGG
TCCAACGAGGTAGAAGACTTTCCCTAGGGGAGCTCTAGATTTCAACCTTTGGGATTTCATCGCCT
GGAATCAACAATTGAAGAACTTTACCCCAAAGAAACAGTCTCTGGTGAGATTCTTGTGTGCTTCA
ATTCATTTGATGTTTCCGCGTCAACTTCGTGCTCCAGGCTGTCTT
Right flanking sequence: Indices 487006 -- 487505
GCGATTGCCATTTTCTATTAGAAAGGCTATTTGCCTTGCTATTCCTCCTCGTCCATGAAATTAAG
GCCGGGGGGAAGTCAGAAGGGAAGGTAAGAAAGTCATATCGGCAAAGAAGAAGGGCTTACCGCTG
TTGATGGTGAATAGGCGCTGTTGGCAATAACCGCTCTTACAGTATCCGCTGCACATGACAAGAAG
GAGTAAGCCAAGAATGAGTAACCACTATTTATTTGCAATATCCGTTCTTTGCGTAACTGCTGTTC
GAGTAAGCGCTGCTAGTCTTATCAAGTCTGGGACTTAAGGAATCGAATAGGCAGCTAGACTTTGC
CCGCTTTCCGGCTTAGACTGATTGAGTGAAGTATGCCAGTTTGCTAACTATAACTCCTTGCTTTG
CTCTGACTCTGCCTCTTTGGACTCACTAGCCTAAGGAAGACTTCTTTTTTCTATGCAAAGATATA
TCCCCGAGCAGAACCGGTCTTTGCAAGTCAATAATGTCCAATAGG
Found at i:488150 original size:69 final size:69
Alignment explanation
Indices: 488068--488206 Score: 174
Period size: 69 Copynumber: 2.0 Consensus size: 69
488058 ACTTTTTAAT
* * * *
488068 CAATTTTACGGGGTTTCATGAATTG-TGAAGATTCGATATCGGCCCTTAGAGCGGAAAA-TCGGT
1 CAATTTTACGGGGTTTCATGAATTGTTCAA-ATTCGACACCGGCCCATAGAGCGGAAAACTC-GT
488131 TTAAGC
64 TTAAGC
* * * *
488137 CAATTTTACGGGGTTTCGTGACTTGTTCCAATTTGACACCGGCCCATAGAGCGGAAAACTCGTTT
1 CAATTTTACGGGGTTTCATGAATTGTTCAAATTCGACACCGGCCCATAGAGCGGAAAACTCGTTT
488202 AAGC
66 AAGC
488206 C
1 C
488207 GAAAATACGG
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
69 56 0.93
70 4 0.07
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.29
Consensus pattern (69 bp):
CAATTTTACGGGGTTTCATGAATTGTTCAAATTCGACACCGGCCCATAGAGCGGAAAACTCGTTT
AAGC
Left flanking sequence: Indices 487568 -- 488067
TCAATCAAGTCCGAAAAGACCAGCTTCACTCCAATTGAGCACTGCTTTTTCTTCGACGAATGAAA
GAAGAAAGAAAAGGCCCGCCTTTTTAAGCGGTACATCGGCCCGAGGTATAAGCGCCCCTTCTGGC
GGATCCCCCTTCCTCATGCTACAGTCTGGTCTGCTTCCCTATGGGAAGCTTGGACGAGGTCGCGC
AGGGACGGCAACTAAACCACTGCTTGGACATTCAAGCAGGCTCACTTCGGTTAATGAAACTGGCG
TTAGCAATCTACCTGATTCGATTCTTCTAGCCTACGGTTCCATAGCAGTCTGCCCACGTCGCATC
CAGACGACGATGTCTGCCCACTATTCAGATTAGACCTAGGGGTGCCCTTCGCACTTTCGTAGAGC
ACAACCAATCAGTCAGATGTCGGCTTCAAAGCAGCCTACGTGCGCCCAAATCTCTATTTTCTATT
AGATTTGATTTATATATTATATTGTCCAGAATCTTACTTTTTAAT
Right flanking sequence: Indices 488207 -- 488706
GAAAATACGGGGTTTGATGACACAACTAAACCTGAAGCTTTGAAGCCTACTCACTCCTTTATAGT
GGAGTTCCATCAACTAGCGCACGTAGGCTGCTTTGAAGCCTCCTCCTTTATAGTGTAGTGAACAA
GCAACGGCTGATCTACGAGCACCGTTGCGCTAACGCGCAGCCGTTTTCTTGCTGGATATGAAATA
GAGGAAGCAACTTTACCGAAGGACGAAGCCTCAATTACATCGACCCTTGTTTACGAGGATCTGCA
AGAGTGGACCAGTCAGCTGCTTATGAGTGGGGGTAGGCCGCCCAGCCCATCAATACGAAGCTTTA
CGCGCACCAGCTCACCACAGCCGCATTAGCTGTTAGTCTCGTTGATCCTGTTGTACCTGGATCAA
CCGTTCTTTGCCACAGGCCAGATAGGAATGAATGGATGAACGCAAGGCAAGCAAGAAGATGCAAT
AGAGGAGATCAACTGGATCCGCAGTCGTGTTTCTCGTGTAGTGAA
Found at i:503736 original size:25 final size:25
Alignment explanation
Indices: 503707--503754 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
503697 CTATCATGGG
*
503707 AATACCTGTCCTACTCCACTAGATC
1 AATACCTGCCCTACTCCACTAGATC
503732 AATACCTGCCCTACTCCACTAGA
1 AATACCTGCCCTACTCCACTAGA
503755 AGGTTTTTGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.38, G:0.08, T:0.25
Consensus pattern (25 bp):
AATACCTGCCCTACTCCACTAGATC
Left flanking sequence: Indices 503207 -- 503706
CACTCTCTTCACGAGCTGCCTGCTTCCAAAGCATTTGTTCTCGCTCGTGAGACTGAAAACACTTC
ATCCTTGTTTCTCGTTACACTTTAAAATCCCTTGGCTAATAACAAACGCCCAGGGGCCATGAACA
TACATGCCTTCGAGATCATCTTTTTTAGTTGGAGTCGATTGGCACTCTTTTGAATCCGGGGATAC
CAGGTACGATACTAGTGGTTTTCGTATCACTTAGTAGCTTACGACCTTTCGCCAACACTTGGAGA
CCCCGCCCTTTCGCCCAACACTTTTAGAAAGGATGGCAGCTAATAAGGGGTAGTTGTCCCTGATC
GTGAGAAAGGAGTGCCCCTATGGGTAAGAGGTTAAGGTGGAGAAGTTTTGAACTAAGTGGCCATA
GTATTCTCTTTCTTGGAAAGGTATCGTTTCCCATTCACCAACGGGATAATAAATGTAGTGATTCT
CAAAGAATGAGTGGGAATACTAGGTTACTGCCTACCTATCATGGG
Right flanking sequence: Indices 503755 -- 504254
AGGTTTTTGCGGGTTTAAGACCTGGCATCCGTTTTTAATGACTCTTTTGGGCGGGCGAACGTGGA
GCTCTTCAATCCGTACTGACACTTACTCATCAGTAGCCGATCCTTTCGAATATGCGTCGTGAACT
ATCTTTATGGGCGGTTGCTAGAGATCTTTTTCGGTGCTCCTCAGCCCGGGGCAGAATCAATTGAC
AAGGAATGCCGTGGAACCAAACCAACCTGCGGAGGTGCGCTAATTGAATTGAAGCCAGGCGATAC
CACAGTGATGAGATCGACTATGACTGATTTACACATACGATCGAAGCTCGAAGATAGGCGTCAGA
TGTTGGGGAAGTAGGCGTTGTACAGCAAATGCACCACTTATAGGAGTTGTTGCCTTCCTAGGAGC
AGGTCTCATTCATAGAAGACAAGTTATTGTAAGGCGTAAATACAGCTAACGAAGTATGAACTTCT
TTTATCACAATCAGATCATCTGGCCGAACGCCCCGTATTATTTCT
Found at i:536917 original size:25 final size:25
Alignment explanation
Indices: 536889--536937 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
536879 GCACAATGAC
536889 AGAGGGGTTTTTGGGGAAGAGAAAA
1 AGAGGGGTTTTTGGGGAAGAGAAAA
*
536914 AGAGGGGTTTTTTGGGAAGAGAAA
1 AGAGGGGTTTTTGGGGAAGAGAAA
536938 TGGAATTCCG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.43, T:0.22
Consensus pattern (25 bp):
AGAGGGGTTTTTGGGGAAGAGAAAA
Left flanking sequence: Indices 536389 -- 536888
CCCTAGCTGCTCCCGCTCCCCGGTCCCGATCCAACACCCGGTCAACTCAAAAATCCACTGCACTG
ATCATCCCTGTACAATCAATGGCTAAGGCTGTGGGCTAGCTTGTTATATGGCTATGGGTCTTTTT
TTGCCGGCTCGTTGGTCTGCCCGGCTGTGCGTGCTATGGGTATGGTTAAATTACGAAGGATTCTT
CATATCGATCCGCCTCGATCACGAACCAAACCGCGATTACGAAGGAAAAAGGTCATCCGCTTATC
CGACTAATCAACCTCTTCAATTAGATCGTCCACCCCTGACTTATGCTGCTCCGACTGCTTCTGAG
TCTCGATCTGGACCCTTCCGGAAGGGATATGACGGAGGGTGGTGGAGATACTCCATTGCTCATTG
GTCTGTTGCTCGCCCTTGTCAGTCCCATCGAAAAGAGGGCGACTTGAACCGCCTCCTTCCCATCA
TCCTCGTTCCCGAGTTGGGTTGGAAAAGGGTAAAGGCACAATGAC
Right flanking sequence: Indices 536938 -- 537437
TGGAATTCCGGATCGAGAAACGGAAAGAGTGCCGCAGCCCATTGGCGTAGGTATAGCCGCCATGG
CATAGGAGTTGACGTCGTGGGTAGGCAATAGGTATCACCGTCGAAGATATGGCCTTAGTTGCGGG
AGTAGTTGGTGGTCTAGAGGCGCATCAGCGGGACCGGATGGGAGAATCCTTCCTCGTAGTAGGGT
GGCCTGCTACAAGCTCTGTAGGTTTCCATCATATTGGTTGGTGGTTCACTATCGAAATCACTGTC
ATTTGATAGTGGATTATCATTTGGCCATTCCATCATGCGGTAGCCATATATTCGGCGGCGGCCAT
CTATAATCATTCTCATTCCCTTAGTTCTACCACCCAAATGTAATTCCGCTAAGAGGGATTCTATC
TAAATGACCTTGACATGTCCATGAAGTGGGAATCGTTTCATGAATGAATTGGAAGAGAAGAGGGA
AAGATTTTTGAATAAAACAATTGGTTGGGATAGGAACTTTCTATT
Found at i:541465 original size:13 final size:13
Alignment explanation
Indices: 541447--541472 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
541437 GAGCTTCTAT
541447 TTCTTCCGTTAAG
1 TTCTTCCGTTAAG
541460 TTCTTCCGTTAAG
1 TTCTTCCGTTAAG
541473 GGGGATTCGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.23, G:0.15, T:0.46
Consensus pattern (13 bp):
TTCTTCCGTTAAG
Left flanking sequence: Indices 540947 -- 541446
TGACAAAAGAACTACAAGGGCTAGTGAAACTCATTGGAATGGGGGGAAAGGGCAATTAATGAATT
CCGAAATCCGCGGAAATTCGGAAAGAAAGGCTTGAGGCTCAAGGCGGAAAATCAAATAGATTCCA
GGAAAAGGGAACGAACGGCAAGGCTAGGATAGAGAAAAGGAAGGGGGAGGGCCATGAATGTGAAC
CTTCAGATGACAGAAAGAAGGGAGAAGGTACTTTCATTAGTAGGCAGAAGGATTGACTCGCCAGA
TTACTTATTGATTGATTTGGGGATGCCCATTATCCAAGGGAATGGCGGATAGAACTTGCTTGATC
GTCTGTGAATTCGGGTAAATGAAGGCTATTTGATTGAAGAAAGGCGCAATAGCAATTGCATTTTT
CCTACGAATTTGCCAATTATGAGTTGGGTTAACCATTAAGCCATGGATGCGAGAGAATCCTCAAT
CTCAGCGAGTGAACTAGGTTTTGGTATTCCGTCTCGAGCTTCTAT
Right flanking sequence: Indices 541473 -- 541972
GGGGATTCGGGAAAAGATGGAATAGGAAGACGTGTTTCCAGAACGAACAAGAAAAGGGTTGAGAA
GGGGGAGTTAGCAAAGTTGGACAAGATTGGAATGGGCATAGGAACATGTATTGATGTACCAGATC
GGCTAATGCTCCCAGGTTGATGCGTTGTATTCCACCAGTTGACTGGAGACTTGATTATTGGTATA
TCGATCGGTCCAGCACGGATTGAAATAGGAGCCGGTTCGACAGGAAGCTTTTGAAAACGCAGTGC
ACCCAGGTAAATAAGGAACGAGATGAATACAGAGGTTAAACGAGCATCCCACACCCGAAAGGTGC
CCCACATAGGTTTTCCCCGAAACCCCCCAGTCACTAAGGTAAACAACGTAGAAAAAGCACCCATT
TCTGTACCGGTTCCGGAAGAGCGAAGAAAAAGGGGATGTTTTGTTAATGGGAACAAGGAACTGTT
TATAGCCGTTGCGATATAAACAAGTATACTCATCCGAGCCGCAGG
Found at i:542781 original size:19 final size:19
Alignment explanation
Indices: 542757--542815 Score: 56
Period size: 19 Copynumber: 3.3 Consensus size: 19
542747 TATTATGATG
542757 ATTCTTATGATCGTATTGT
1 ATTCTTATGATCGTATTGT
*
542776 ATTCTT-TAAAT-G-A-TG-
1 ATTCTTAT-GATCGTATTGT
*
542791 ATTCTTATGATCGTATCGT
1 ATTCTTATGATCGTATTGT
542810 ATTCTT
1 ATTCTT
542816 TAAATGAGCG
Statistics
Matches: 31, Mismatches: 3, Indels: 12
0.67 0.07 0.26
Matches are distributed among these distances:
15 8 0.26
16 4 0.13
17 2 0.06
18 3 0.10
19 14 0.45
ACGTcount: A:0.24, C:0.12, G:0.14, T:0.51
Consensus pattern (19 bp):
ATTCTTATGATCGTATTGT
Left flanking sequence: Indices 542257 -- 542756
CGTGGCACTCCTTGCTTGCGGAGCGACATACCGGAAAAAGAAGGATTGACTTTCTAGAAGAAAGC
CCGTAACCGGACTACGAAAAAGGAGGCGAATGACCAAAAAAAACTGCCTATGAATCGAGTCCTAA
TCATTATCATTAGGTCTCTCTAGGTATTGTCGAGTATCGCCGTATAAAGACGGAGAGACTAGTCT
TTAGGAGAGACTCGCTATCTTCATTAGGCGTATCTAGGTATTGTCGAGTATCGCCGTAGGCGATA
CTCGACAATACCTAGAGCTAGAGAGACCTTATGAAAGAATTCGCGTAAGATTAAGATATATATAT
ATGGAAGGATTCGCCTATGATGAATATTGAATATGAAATGATTCGCGTATTCTTCTTATGAGCAT
CTTAACACTTTGTTGAACTATTATTCTTCTTATTCTTTCTATTCGTCGTATGATGAATATGTGTA
TATGCCGTATTCTTTCTATTCTTATCTTATGAGCGTATTATGATG
Right flanking sequence: Indices 542816 -- 543315
TAAATGAGCGTATGATAGATATATATGAGTATTCGCCTATTCTTATCTTAATATGAGCATCGTTA
TCGCATTTGAATCTCTCTCCATTAGAAAGCATTATCAACTATTGATATTAGAAAGCGGTATACCA
TACCATTAGTGAAAAGACCTTTTACTGAGCTCTTTTTTAGATTGGATTCATTTTTATATTTCTAC
TATATGAGCATGAAAGAAAACCATTTCGATTGCTTGATAGCGAGTTAAAAACCCATTTGGATTCT
TTGTCGATATAGGATAATTAACCTGGTTTCAAATGATTGAGATAGATAGGACTTTCACTAGCCAA
AAAATCTACAGACATCTTATCTTATCTTATAGGTATCGATAAGGTCGATAAGGGCTCGACTCGCT
TGTCTCGCTATATCTTGTCTCGTTATATATTTTTCTTGTTGGGCCTTACTCCGTTCGCTTTGCTC
ACGGCGGCCCGGGTGAGATACTACTATAGAACAAATGCACAATCC
Found at i:542831 original size:39 final size:34
Alignment explanation
Indices: 542751--542822 Score: 135
Period size: 34 Copynumber: 2.1 Consensus size: 34
542741 TGAGCGTATT
*
542751 ATGATGATTCTTATGATCGTATTGTATTCTTTAA
1 ATGATGATTCTTATGATCGTATCGTATTCTTTAA
542785 ATGATGATTCTTATGATCGTATCGTATTCTTTAA
1 ATGATGATTCTTATGATCGTATCGTATTCTTTAA
542819 ATGA
1 ATGA
542823 GCGTATGATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 37 1.00
ACGTcount: A:0.28, C:0.10, G:0.15, T:0.47
Consensus pattern (34 bp):
ATGATGATTCTTATGATCGTATCGTATTCTTTAA
Left flanking sequence: Indices 542251 -- 542750
CTCGTGCGTGGCACTCCTTGCTTGCGGAGCGACATACCGGAAAAAGAAGGATTGACTTTCTAGAA
GAAAGCCCGTAACCGGACTACGAAAAAGGAGGCGAATGACCAAAAAAAACTGCCTATGAATCGAG
TCCTAATCATTATCATTAGGTCTCTCTAGGTATTGTCGAGTATCGCCGTATAAAGACGGAGAGAC
TAGTCTTTAGGAGAGACTCGCTATCTTCATTAGGCGTATCTAGGTATTGTCGAGTATCGCCGTAG
GCGATACTCGACAATACCTAGAGCTAGAGAGACCTTATGAAAGAATTCGCGTAAGATTAAGATAT
ATATATATGGAAGGATTCGCCTATGATGAATATTGAATATGAAATGATTCGCGTATTCTTCTTAT
GAGCATCTTAACACTTTGTTGAACTATTATTCTTCTTATTCTTTCTATTCGTCGTATGATGAATA
TGTGTATATGCCGTATTCTTTCTATTCTTATCTTATGAGCGTATT
Right flanking sequence: Indices 542823 -- 543322
GCGTATGATAGATATATATGAGTATTCGCCTATTCTTATCTTAATATGAGCATCGTTATCGCATT
TGAATCTCTCTCCATTAGAAAGCATTATCAACTATTGATATTAGAAAGCGGTATACCATACCATT
AGTGAAAAGACCTTTTACTGAGCTCTTTTTTAGATTGGATTCATTTTTATATTTCTACTATATGA
GCATGAAAGAAAACCATTTCGATTGCTTGATAGCGAGTTAAAAACCCATTTGGATTCTTTGTCGA
TATAGGATAATTAACCTGGTTTCAAATGATTGAGATAGATAGGACTTTCACTAGCCAAAAAATCT
ACAGACATCTTATCTTATCTTATAGGTATCGATAAGGTCGATAAGGGCTCGACTCGCTTGTCTCG
CTATATCTTGTCTCGTTATATATTTTTCTTGTTGGGCCTTACTCCGTTCGCTTTGCTCACGGCGG
CCCGGGTGAGATACTACTATAGAACAAATGCACAATCCGATATAT
Found at i:543224 original size:15 final size:15
Alignment explanation
Indices: 543204--543233 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
543194 GCTCGACTCG
543204 CTTGTCTCGCTATAT
1 CTTGTCTCGCTATAT
*
543219 CTTGTCTCGTTATAT
1 CTTGTCTCGCTATAT
543234 ATTTTTCTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.13, C:0.23, G:0.13, T:0.50
Consensus pattern (15 bp):
CTTGTCTCGCTATAT
Left flanking sequence: Indices 542704 -- 543203
TATGTGTATATGCCGTATTCTTTCTATTCTTATCTTATGAGCGTATTATGATGATTCTTATGATC
GTATTGTATTCTTTAAATGATGATTCTTATGATCGTATCGTATTCTTTAAATGAGCGTATGATAG
ATATATATGAGTATTCGCCTATTCTTATCTTAATATGAGCATCGTTATCGCATTTGAATCTCTCT
CCATTAGAAAGCATTATCAACTATTGATATTAGAAAGCGGTATACCATACCATTAGTGAAAAGAC
CTTTTACTGAGCTCTTTTTTAGATTGGATTCATTTTTATATTTCTACTATATGAGCATGAAAGAA
AACCATTTCGATTGCTTGATAGCGAGTTAAAAACCCATTTGGATTCTTTGTCGATATAGGATAAT
TAACCTGGTTTCAAATGATTGAGATAGATAGGACTTTCACTAGCCAAAAAATCTACAGACATCTT
ATCTTATCTTATAGGTATCGATAAGGTCGATAAGGGCTCGACTCG
Right flanking sequence: Indices 543234 -- 543733
ATTTTTCTTGTTGGGCCTTACTCCGTTCGCTTTGCTCACGGCGGCCCGGGTGAGATACTACTATA
GAACAAATGCACAATCCGATATATATATAGGAAAAATGCAAAAAGGATAAGAAACGAGCTCGATC
AAAAAGAAAGAGATAGAAAAGATCTCGCAGCATAAAGTAAAAGGAGTCTACAAATAAACGAAAAG
TGGAAACGACGAGCTTTTTTGTCTTTTAAGCTAAAAATGTCCATCGTGGTCATCAGGGCCAAACC
AAACTCCAGGTCCAGTCCGCTAAGAGAGGCCGTCGGTGTAGACCGATCTCCTCCTCATCGGAAGA
AAGTGACTTTTTCCACTCTTGGCCACTCGACGCATTAGGTTTGCATATCGTATCGTATGGTATGG
TGGCGTCATATTCATATAAAGAGATGGGGCTGTTCGGTCGAAAACTCATACAGCCAATTTTGGGT
AGGAGAGGACGTACAGCCAGTGGAGCAGGGTCGACTGTCGTTTCT
Found at i:568795 original size:19 final size:19
Alignment explanation
Indices: 568771--568807 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
568761 TTCGCTTCTA
*
568771 CTCGTAACCTCGCTCATAG
1 CTCGTAAACTCGCTCATAG
568790 CTCGTAAACTCGCTCATA
1 CTCGTAAACTCGCTCATA
568808 AACAGTGATG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.24, C:0.35, G:0.14, T:0.27
Consensus pattern (19 bp):
CTCGTAAACTCGCTCATAG
Left flanking sequence: Indices 568271 -- 568770
TTTGTCCTACCGAAAAAGGTTTGATCATCATAGAGTCCCCCGAAGCGAAGTACTCATTCGATTGG
CCCAGTGGGATAGACCTGCTCTTACGGAAGTGGATTGGCTCCTGCACCTAAAACAGTTGAAGTTC
TTACTGCCGCAGTTGGAGATGCTTGCTTGTCTGTAGTCGAGCTTGAAGTCCAGGGAGAAATACTC
ATTATTTCCCGAGATCCATGGTGGAAGGAAAAGAAGGCTATTTTGATTGTTTTAGCCAGACCAGT
GACGAGAGGGAATAGTTACTATTGACCGGGATCCACCTCGGAGGAAGGCACGGGGGATGGCCTTA
TTTACGAACTAGACCGCCGAATCCGTTTAAGACCTGCGAATGAGTTTAAGACCAAAAAACGAGTT
TACGAAGGCTGTGAATGAGTCACCGAAGTCAAGCCCCTAGTTGCGAGACCCCTGTTCATTCGTAA
ACTCAGTCGCACGGATGCTGCTTCACTTCATTTTATTCGCTTCTA
Right flanking sequence: Indices 568808 -- 569307
AACAGTGATGCTGACTTTCTTTTATTTCATTCGTAAACTCATGAATAATGATGCTGACTTCATTC
TTAAAGGTAACTGGTGAACAGGATTGGGACAAAGACTTATATTATAATATAAGCGAGCCAGTCAT
TCGAGGTCTTTCCGATCTCAAAAGAATGGGAGGGAGGAATGAAAAGATGGGAGTCGGGTCGGCTG
GATTCGGGATGGGATCGACTAATGAATATGGGTTTGATGGGTAGGATAAAACATGTTCTTCTCGG
TCATCGCTAACTGCCACCTCATAGTAGTGATACGCATTGGGCGCAAGGGAAGACCACTCTAACTC
CCCTCATTGCTCTAGCCGGACCGGGAGAAACTAGAAAAAGGGGGTAGTGGCTCCGGACGAGGGAT
AAGGACGAGAGATGCGCAACTAGGTGATATAGAAGGTCGACCCATCTTTTCGATCCCATGACTCC
GTGGGGACGGGACAGTCCCAACCGGGCAGAGAAAAAGAATAGAGG
Found at i:572316 original size:13 final size:13
Alignment explanation
Indices: 572298--572323 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
572288 GGGGAGCGCT
572298 GCGAGACTTGCAC
1 GCGAGACTTGCAC
572311 GCGAGACTTGCAC
1 GCGAGACTTGCAC
572324 TTACGCACCG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.31, G:0.31, T:0.15
Consensus pattern (13 bp):
GCGAGACTTGCAC
Left flanking sequence: Indices 571798 -- 572297
TTCATTCAATTCAATTGTACCGCCTCCCCTACCAACTCACGAAATTGATGGCACCTCCCGTTGTG
TCCCTGTCTTGAACTTCTGAATTACCAATGGGCTTTTCGCCTCCCATATGAGAATGAGATTGTTT
TCACACGCCTTCTTGTTACATCAATATAGGCCTACGATCGAAGACTGATTTCCACAGGCCAGATC
CCTTACAGGAGACCTATACAGATAGATAGACGAGAGCTCGACTGGTGCTTCACTTCCAGTCTTGA
TGCCGTACTTCTTGCTTATGCCATTCGTACTCTATCTGCTTCTTCCATTCATTTTTATGTTACTT
GTTAGATTTGTAAGTTAGATTCAATAGTCAAGTATACAATAGCGATAGTCTTCTTCTTATATAAA
AAGTGACCATCTTTTCTTTTGATTTGAGTTCGTTACTGAATTTACGATAAAACTAGACGAATCCG
TTGTTGCGGGCGCTTGCTTAATCTAATTATAGCTAGGGGAGCGCT
Right flanking sequence: Indices 572324 -- 572823
TTACGCACCGAAGAGATATTTAAGAGATAGGGCTTCTTAAAAGCGCCTTTAGTGTTGCTTTTGGA
CTTGTAGCGTCGTTGTCCTGTCCCTCTCCTTCCTAGCTCGAGTTGGCAAAAGCAACTAAAGCTCT
AGTAGCGCCATTCGCCATGTTGGGTTGGTCGCTTGTCAGGCAGTTCCGGCAGTGAAAGTTCAGGC
AGCTATGGATGGGCATTCGCCTTCGGCTTCCTAACTCTAGCAGCTAGTGCAGCTCTTGGAGTTAG
GGCAGCTGGGTCAGCTAGCTCTTCAGGTAGGTCTTGCAGTTAGGCTCGTTTAGGCAGCTGGTCGT
CTTTCGTCTTCGGCTTGAAGACAAGACTCGTAGCGTCGTCGGTTAGTTAATGTTCAAAAAGACAA
GTAGCTCGAGTAGCTCTAGTTGTCTAAATACCTCTTCCGTCGCAGCCTTGCCTGACCCTGACTAA
AAGCAGTGATCAATCTGTCCCCTTCGGGACTCTACGCTACGGCAA
Found at i:574349 original size:15 final size:17
Alignment explanation
Indices: 574319--574354 Score: 51
Period size: 15 Copynumber: 2.3 Consensus size: 17
574309 TGACCAGAAA
574319 GACTTTGAGCTTGCTTT
1 GACTTTGAGCTTGCTTT
574336 GACTTTG-G-TTGCTTT
1 GACTTTGAGCTTGCTTT
574351 -ACTT
1 GACTT
574355 AGTAGGGGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.21
15 7 0.37
16 1 0.05
17 7 0.37
ACGTcount: A:0.11, C:0.17, G:0.22, T:0.50
Consensus pattern (17 bp):
GACTTTGAGCTTGCTTT
Left flanking sequence: Indices 573819 -- 574318
AAGATTCAAGCCCCGTTCGATCGGTTAAAGATTCTATTCACTCCCCTACTAAGTCAAGGGGGATC
GAGATTCAAGTAATCGTAATTTCCTATCACTCACTCAAGCTAATTGCATTTCCTCAGTTAAGCTC
TTCAAAATCGGTTTGGCACCTCGATATCGGCTCTTCTCCACCTGGGGCTGGCTGTACTATGTTCC
AAGGAAAAGGATTTTCTTACTTACTCCCCTCCTCTCCTTAACAGTCGAGTCTCCTTCGGACCCTG
ACTTAAGAGCTTTAATAGCTTAGCTCATCTTCGGGCATTTCGCCGTCTTGGTTGGTCGACAAGAG
GGGTTGGGAATAGGAATAGTTGAAGAGCGAAGCAAACCCCCGGTGAAGGAGAGGAACCTTCGAAC
TTCAAAGTAAGAGCGAGGAGGAAGAAAAGAAAAGGCCATTTACTAGAGATAGTCTGCCAGAAAAT
ATTCAAGATTTGGAAGCCCCTATACTGATAAAGCCTGACCAGAAA
Right flanking sequence: Indices 574355 -- 574854
AGTAGGGGAGGAAAGCAACCCTCAGAATATGGTCTACCTTACCCCGTCTCGGGCTTTCTAGATCC
CTCAGAACATAGTCTTTCCAGCCTTTCCGGAGGTTCCGAACCTATGAGATTTCACCGGGCTTTCT
TTTGTGAACTCTTTCGGTACTGCCCCACTGGCTCTTGATCTTGAAGGTGTGCTGGCTGATGAATC
TCTTTCCGGGTTCTCTCTATCTGCCTTTCCTGGGTCCTGAAGTTCATTCTAGTCTGGCAAGGATG
GAGGTTGAAGGAGAGTTGAACGAAGGGTCTACTCAAGCGAATGAGAGCGAGCAGAATAACAATAA
GAGAATAGCCGTCCAATGGGTCTTTCACTTTCAAATCGATATGAGATCCGAAGCCTTCATAAAAT
AGGGCATTCCTTAGCTTTACTTTAGAAGAGAAGGTAACCATATTCAAAGACGCAGCCATAGAGCA
TGAGCCTTCGTTGCTACTCTACTACTTATTTATAGCTATAGTTAT
Found at i:580248 original size:24 final size:24
Alignment explanation
Indices: 580221--580266 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
580211 GTATCACCTT
580221 ATTATAGAAATAGCCCTTATTATA
1 ATTATAGAAATAGCCCTTATTATA
580245 ATTATAGAAATAGCCCTTATTA
1 ATTATAGAAATAGCCCTTATTA
580267 GCTCAAGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.41, C:0.13, G:0.09, T:0.37
Consensus pattern (24 bp):
ATTATAGAAATAGCCCTTATTATA
Left flanking sequence: Indices 579721 -- 580220
TAGCGTTCGGACCCCATTTAATTATAAGCATGGGCTCCTCTCTACCAATAGGAAGAATGCTTACA
TATCCCATCCAAAAAAAAGAAGGAACAATTGCATATAGAACCAAAAGCACTGGTTGTATTGGTGT
GCTTCAGGTACTAGCTTCAGGAAGTGGGATTGGCGCGCAAGTGATCGAAGAGTCCGCCCTCACTC
TATGCCTCCCCTCCCTGCTGACGATAGAAAAGAGTCCTCAGTGCGAATCTTGGTATTCTCTCCTT
CCTTCCTGTCTCCCCTCGCCCTCTCTTAGTGGTCTTACCTCCGCCCTAGCCTTCCACTGCTTACC
GAGCTTTCCTATCAGTGGAATGGTTCTTAGGTCTCCCGCCTACCCTACCCGGAAGAGTGGGCAGC
GTCCATACTAGTCTTCGGCCCATAACAAAAGGGGCGTACCAATCCTACTAGCTAGCGAAAGCGCT
TTCTCCTCCCTACCTCCCCCATGCCTTCTGCACTGGTATCACCTT
Right flanking sequence: Indices 580267 -- 580766
GCTCAAGAAATGGCAAATCCAGATATCTGATCTCGCTGCCTCATTTGGAGGCTAATTCCGTCCTT
TTATCCTTATACCGATGGCATCTGAAACTGTGGATTTAGGAGTGACTCCTTAAACTAGCCTGCTT
TTGCTGCCTTTCAGCTATGCCTGACCTTTAGGGGCTAGCTTACGCTCTAGCAATCAATACTCATC
TGCGCCCCTCCCTACTTTGAGACTGGTGCAGCCAGCTTAGCTGCCGGGCATCAAGGCCGTGAACT
ATATCGTAGGGCTGCCCTTAGCCCGTAACACCAAAGAAGTCTCTTTTCAGAAAGCAAACTACAGA
GGAAAGAGAGGAAGAAGTAAACAGAGGAGCCAACCTAGGCCCGTAGACCAACGTCCTTCTCGCTG
CCCTTGGATTGCTTCTCGGAAGCCTACTTTCAGTATCACTTCCAGTAGTGTACTACTTTCTCAGT
GTCTTAGTTCCGACATCCAACTTCCAGTTTCCTCCGACCAGCTAG
Found at i:584171 original size:13 final size:13
Alignment explanation
Indices: 584153--584179 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
584143 TGTTTGCCGC
584153 TTTCTATTATCTT
1 TTTCTATTATCTT
584166 TTTCTATTATCTT
1 TTTCTATTATCTT
584179 T
1 T
584180 ACCCATAGGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.70
Consensus pattern (13 bp):
TTTCTATTATCTT
Left flanking sequence: Indices 583653 -- 584152
TTCTCATTTTTTGAAGCATAAATAAAGGATAACACCCAACTTGGTTCCCCATTCTCGCGGATCAA
GGCATGGATAGCATATGGTGATGCATAGAGGATCTCAACATTAGCCACATCGCCTTTCCATAAGA
CCCAACCTCCACCCGAGAAGCCCATGGGATCCGCTCTACAGATACCATCAAATCCCAGTTTCCGA
GATACCACATCAGCCCTATCACCACTAATCCTAGGTTCTAGGATTGCTATGATAACAGGGTTATA
CAGAGTAATGAAACTCTTCAAAGTTGCAACAAAATGGATCTTCCCTGCCCCTCTGACATTCCAAG
AAAGAACATTCATTGGTTTGTGGAGGTGGAAGGAGGAAAATCCGCAATAGGATTTCCATCCTTAC
CCATAGTAGACTCCAGGTAGTGATTCCTTACCTCAAGACCATCCACTTTTGTGCTATCCCTTCCT
GTCTTAGAAGCATACGGATGGGATCTAGTATTCTTTGTTTGCCGC
Right flanking sequence: Indices 584180 -- 584679
ACCCATAGGAGAAGAATTCTTATTATCTGGAGGCTTACCTGAGGGCTGATTAAGAGGCTCTGTCA
AATTAACTGCTTTGAGAAAGCTTTCTCAAATATATTAGCTAAATAAGGGGCTGTTTCCATTTTCT
TTTTTTTTGTTACTGGCTTGGGGATCTTGGTATTGATCCATTGGGTTCACCACTTTACTGATCTC
AGGGATGGCTCCCTACCTTCAGAAGGGTTTTTTGACTCATTGGGGTGCACTGATGTTGATTATAA
TTATCTTCCTAAATATCCTTTTAGACTTACCATACCCTATTTATTTGAGAAAAAGACATTCCAGA
GCCATAGCTATTCCGTGTAAGCGGGTAGTTATGTGCGTCTCAATAGCTTACTTGCCTTCAAGCTA
GACCCCATTGGGAAAAGAAAAGCCCACTCCGTCCGTAAGACAAACTCTAAAGGAGACTGGCTTCC
TGGTCAAGCCAGTCCTGTTGTAATAGTAAAAGCAACCTATCGCGC
Found at i:594695 original size:5 final size:5
Alignment explanation
Indices: 594681--594740 Score: 93
Period size: 5 Copynumber: 12.0 Consensus size: 5
594671 GCGGCCTACT
* *
594681 TATAG TATTG TATTG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
1 TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG TATAG
*
594731 TATTG TATAG
1 TATAG TATAG
594741 CCAGACTTTC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 51 1.00
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.45
Consensus pattern (5 bp):
TATAG
Left flanking sequence: Indices 594181 -- 594680
GAGAGGGAAAGAGAGGAAGGAACTGAAGCAAGACTCGAAGACAGAGAAGGAGAGTGAAGAGATTC
TCGAATAAAAGGATTCGCGGCGAGAAGCGGGCAAGGCAAAAGCTGCTGAAGGAAGGGCGCAGATC
CGAGAAGGCAAAGCGAAAGAAGACCACTCACTTACTAAGAGGAAGGAGACCAAGCTAGATGAAAG
AAAAGAGCTGCTGACTTCAGATCAGAGGATTCCTATTCGACCGGTTCAAAAGATGAACTTCACTT
TCTTAGTCCGCCCCGGGCTTCTCTAAAAAAGGTTAGAGAAAGTGAATACACCATAGGTTGCTCAT
TTTCCCTAAAAGAAGGAAGTCGGCGGTGAAGACGAAAAGGGAGGCATACTCTAATTCCTGTCTCG
ACATAGGCGAGCGAGCTCTAAACGAAAAGGCAAGAAATAAAGAATAGAATACCGAGAAAGGCTTT
AGTTTTTTCTCTGCTTGCTGCTAGCAATAGCAACCGCGGCCTACT
Right flanking sequence: Indices 594741 -- 595240
CCAGACTTTCCCGATTCTTCTTATTACTTTCTTTTGAAAGCATTCTCCCTTTCCTCTTCGAGCCA
AAGGCTATAACCCGCTTTCTTTTGATCCCTTTCCTCTCACGAGCCAACCCTTAGTTCCCTCTTCT
CGTCAAGCACTTTCAGTCCCTTGCCCCAGCTTCAATCTCTTTCTTTGTATAGGCAGATCTTTATC
TATTCCGAAAGTGCTTCGCTTGGTAACTTATAGGGCCCGCTTCTTCATTCCGATCGCTTTAAGAT
TCTATGAATTAACTATAGGTAGTGACCGAAGAGATGACTTTCATACCGGCCAGGCAAGAGAGTTG
GAGAGGGTGCAAGATAGAAGGCAGATGGCCTGCTCTTTTCTCTTTGTTGGGAATCGGATAGGGCG
AGAGGAGATTCAGCTTCAATCGGAGATTTCCGCTGTTCAAGCTATCTCATCAGGTAATTCAGTAG
TCGGGGATTCCGCTATAGCCTTAGGAATAGGGTACGAATCGGCTG
Found at i:601349 original size:21 final size:21
Alignment explanation
Indices: 601323--601362 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
601313 TCCTCGCATG
*
601323 ATTCAATCCTGTAATGTTACT
1 ATTCAATCCTGAAATGTTACT
601344 ATTCAATCCTGAAATGTTA
1 ATTCAATCCTGAAATGTTA
601363 GTATCAGTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (21 bp):
ATTCAATCCTGAAATGTTACT
Left flanking sequence: Indices 600823 -- 601322
CAATTTCAGGACGAGGGCTAGTTCAGTCAGTAGCCGGCGTTCCTGAACTCATTCCGTATACTATA
CTTCTAGAGTTGGCACGCGGAGCGACTCATTCAGTATAGGGATTAAGAGTGTTGGAAACTACATG
AGTCTTAAAGCGACTCGTTCAGTCGGGTCGTCAACTGGCCCGGGCCGTAGACTGTTGTTATATAC
GTCGTTGATGAAACACCTTATCGTAGACGACTTTCTCTTGATATACGTTGACGAAACCACCGTCA
TTTTTGTCATCAGGTTCTCTCTCTTCGAGAAGATCTGTCCAACTTTCTTTTTCTACGAAACCCCC
GAGTTTTTGGGCGTCGCATCAGTGGGCACGTTACCGGGGGGTGATGAAACGAGTTCCATATACTG
GGTGATGGCACCTACACGACACGAGACGATAAATCAACCAAACACATATGAAAAAGAGCGAGTGA
GCTAGGTTCTACGATAAACTAGAGGCGAGTACGGTTCCTCGCATG
Right flanking sequence: Indices 601363 -- 601862
GTATCAGTAACATTTCTTCTCCCTCTGAATAAGACCATGTCTCCAAAGGCCGGTTCCCTCCGGTG
ATTCCTCTGTCAAAATATGGTCTGTGACTTTTCGAATCGATAATAAATGGTATCCGTGCGCCCAA
CCACGCACTGAACAATTCTACCGCATGAGAGACAGAGTAAGCTAATGGATTCTGTGCGGGCCAAT
GCACGGAAAGATAAGGGCAACAATCCAAGACTAAACTAAACTAAACGACCAACCGGTTGGACTTC
GTCCGTCCTATCTTCGTACATAAGCCAAGATGGCAGCGTACACTTTCTCCTCGCAGGGATTTGAA
CCCCACTCGGAACAAGGTACCTACCCCTCTTCAATAGAAGGAAGGGTCAACTGATCATTTTCGAC
CCCACAGGTTCTCCATAAACAGCGAAGCTGCATAGGGAAATCGTCTGTGGCGGACCTTAGATCCA
GACTGAATCGAAAAGCCTCTCAGCCGGTTTCAACTGGTCAAAAGT
Found at i:604142 original size:23 final size:24
Alignment explanation
Indices: 604116--604161 Score: 76
Period size: 23 Copynumber: 1.9 Consensus size: 24
604106 TGGAAGAGCA
604116 GTTCTCGGTGCCT-AAAGAGAGGT
1 GTTCTCGGTGCCTGAAAGAGAGGT
604139 GTTCTCGGTGCCTGGAAAGAGAG
1 GTTCTCGGTGCCT-GAAAGAGAG
604162 TAGGCGCCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
23 13 0.62
25 8 0.38
ACGTcount: A:0.22, C:0.17, G:0.37, T:0.24
Consensus pattern (24 bp):
GTTCTCGGTGCCTGAAAGAGAGGT
Left flanking sequence: Indices 603616 -- 604115
TCGCAGGTCTTTCTGCACCCCCGGGGTATGGGATAACACCCAACCATGTTACCGTCCACCGGACT
AAGACTAGTCTCCTCTGCGACTAGTTTTCTGGCCGAGACCTATGAGAATTGGTATATCCATCTGG
CTGGCCCTAAGTGGATTTTGCGGATAAGATCCGGGGCGGGACCTTAGCCGGGTACCAGAGCTGAG
GGGGTACCCATCTGAGATAGGAAATAGATGGTGAAGGTGACCAGAGCTATTTTGAGCGTGTTGAC
CAGTTGAGTGGAGTACATGAGCGTTCCGTGATGTTTAGTCAAGTCCCGTACTGTAATGTATTGTG
CCATTCAGCTTACCAGTCCTATTTGGTACAGAAATGGAGTTGGGTAATGGTTGGTATTTGGGTAG
CTGTTCAACTACTTGTTTATCTACTTGTTCTAGTATTGTTAGCTCTTTCTACTATTAGTATTAGC
TTTCCTCTCTTCTATCAGTATGAGGACGGTGCCTTTGGAAGAGCA
Right flanking sequence: Indices 604162 -- 604661
TAGGCGCCTTTGGAAGAGTAAGCGAGGCGCGTAGAAGGAGAACGCTTAGAAAGAGACAGGCATCA
GTTCCTCGGTTTCGGGAAGCTAGACTCGCTAAAACAGTAATGTACCATCGAGTACGAGTTTCTTT
CTTTTCGAGAGCGGAGGAAGCCAACTCATTCTCCTTTTAGGTGTGAACTAACAAGTCTTCTGGCT
CCTAGTACTTTGATGAGTCTGATCTACGGATTCTAGTAGCGGAACAAGCAGTAGTTCTTAGTTCT
TATACTTGTTTAGGAAGCACTTCTTCTTTATTCCAGCTCAGTGAACGCAAGACAGATATAAGGTG
TTCCACTCCTTTGAGTAGAGGGCTTAGTTCCACGGCTTAGAGGGCGCTTATTCCTGATGCCTTTG
AGGAAGGTGTTCCATGCTTTTAGAGATCAATTCTCTGTGCCTTTGGATCTGATTACTTGTTTTCT
TAGCGGAGCTTGTCTGAGGTATTAGTTCAAGTATCTTTTGAAGGA
Found at i:606233 original size:13 final size:13
Alignment explanation
Indices: 606215--606240 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
606205 ATTTGCCCTT
606215 CCTTTAGTGTTGA
1 CCTTTAGTGTTGA
606228 CCTTTAGTGTTGA
1 CCTTTAGTGTTGA
606241 TACGCTAAAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.23, T:0.46
Consensus pattern (13 bp):
CCTTTAGTGTTGA
Left flanking sequence: Indices 605715 -- 606214
AAAGATAGCTAAAGCCAGGGCAAATTCGACATGAAATCTGGATTCTGGCAAATCCAGATCGCGGA
TCGCTATCAGACAGCTTGGACAGTTCCTATGGGACAATATGAATGGAACGTCATGCCCATGCCGT
TCGGACTCAAAAACGCCCCCTCTGAATTGAAGAAAGTCATTGACGAAATCATGAGACCACTCGCA
GACTTGGCGGTTGTCTACATTGATGATGTCCTCGTCTTCAGCCCGACCGTCGAGGCCCATTTGAA
GCACCTTCGGGCCTTAAGGAGCGTCATTGAGAGATACGGGATGGCGCTTTCGGCTAAGAAGATGA
AACTGTTCCAAAAAGAGGTGGACTTATTGGGACAAAAGATTCAGGAAGGAAAAATCAAAAAACAG
GTTCAAAGGCAAGCGACAAAGAGAGAAATCTCATTGCTATGCGAGATGCGATGCGCTTCCCTTTA
GAGTAGATCCTGTGATAGTCGAGCTGAAGAGAGGGATTTGCCCTT
Right flanking sequence: Indices 606241 -- 606740
TACGCTAAAGCGATCAAGGTTGACCTTGACTTCTTTATACGCTAAAGCGATCGGTGAAGCATATA
AAGGGAAAGATCTGAAGCCTTTATCAGCTTTAAGCAGATAAAAAAAAGAGCGCTTCCCACCCAGC
GAATCAAAGGCTTTACCTTTATACTTTACTAATGGGGGGGCGAACCCAACCATGGTTAGGGGCTT
GAGAGCCAGCAAGAAAAGGCCTTTACCTTTATATTAGGGGCTAACGCGCTAAACTAAGAGAAATA
AGCAAACGCGCTAGGCGCCTTTAGTTAGGAGTAGGGCCGTTGCTTGTTTGCTGGAGAGAGAAGCC
AGAGTGAGAGACGCGGGAAGAGAGAGGGAAAGGGCAGAGCGAAGGGATAGCTGGGTAGCTAGCCC
AAGCGGTAGCGGTATCATGAATGGGAGATGCGAATGCGAAACCCGCGAACAGTGGTCGAAGAAGA
GGAGGACAATTCGGTTGAAGCTGCTATGCCCACAGCTCTTATTCG
Found at i:632847 original size:20 final size:19
Alignment explanation
Indices: 632817--632854 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 19
632807 GGTGCCCGGT
632817 CTTTCTTTCTTTCTTTCCC
1 CTTTCTTTCTTTCTTTCCC
632836 CTTTCTTTTCTTTCTTTCC
1 CTTTC-TTTCTTTCTTTCC
632855 TTCCATAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.00, C:0.34, G:0.00, T:0.66
Consensus pattern (19 bp):
CTTTCTTTCTTTCTTTCCC
Left flanking sequence: Indices 632317 -- 632816
CCTACTGATTGCTCTTTTTTTAAACAAATGGTGATCCGCCTATTCCGTTGAGCACATAAATAAGG
CCAAGAGAAAGGTCTTTCTTTCGGCTTAACGGCGACCACAGGCGAATGCTGAGGCCGAGGGAAAG
GGTCTGTTATAATTCCAAAATACGGTGGTTCCGAGCTTGCCCCGGATCGCCCTAGGTTTGTCTCT
CCTTTCGTTTTCTGCCTAACGTGCCTGATTGAATCTGTACATCTTTATAGAAAAGGGAAATTGAA
TAAGAGATGAGACTTTCTTTCAGTTTGAAAGATAGCTCGTGGAAACTCTGAATAAGAGGGAAAGA
CCGGATTCGACACCTGATTTCACACACCGGATTTGCCAACCCATACGATCTCGATGGATGAGGAG
TGTGACCTCTGCTGCGGATTATTCCGATTAAGCAGATGCAACCGAGGAACTTGCGCTGGTCACTT
GCGCTGCTCTTTCTTACCTTTAGTTTGGTATCAGAGGTGCCCGGT
Right flanking sequence: Indices 632855 -- 633354
TTCCATAATTCATGGAATCCGCATTAGATGAGATGAAATGGAGAATGGAGTAGGAACCAGAATGA
ATAATCAAGATCGATTGAACATATATATATACGAGAATATAATTCTCTTACAATTAAGAAATCCA
GAATTCCGGAAATCATTCTATCTAGGTAGGTTAGAAGTCCACTATTTCATCCTTCATGTTTCAAT
CGAAGGAGAGTACTCTAAATCACAAAAATCAACCTCCTCTTGTCCAGAATCTTACTTTTTAATCA
AAAATACGGGGTTTCTTGAATTGTGAAGATTCGATACCGGGCAGAAAACCTGTTTAAGCCAAAAA
TACGGGGTTTGATCAACATAGTTGCTTTTCCCACCCGGTTTAGGAAAGAAAACCTTGTTTAAGCC
AAAAACACGGGGTTTCTTGAAAGTGGAGATTGAACGGTAGAGGGCGAAGATAGGAAGTGTGAAAG
GCAAGTCAAAGACTCCTTCAAACCCGCACAAAGAGTCATAACCAA
Found at i:635834 original size:12 final size:12
Alignment explanation
Indices: 635774--635834 Score: 52
Period size: 12 Copynumber: 4.8 Consensus size: 12
635764 AAAGGCAAGC
635774 TCATCAATC-GAT
1 TCATCAA-CAGAT
*
635786 TCATTAACAGAT
1 TCATCAACAGAT
* *
635798 TCATCTACCGAT
1 TCATCAACAGAT
635810 TCAGATACAACAGAT
1 TC--AT-CAACAGAT
635825 TCATCAACAG
1 TCATCAACAG
635835 GAGGCCCCTT
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
11 1 0.03
12 26 0.67
13 2 0.05
14 2 0.05
15 8 0.21
ACGTcount: A:0.38, C:0.25, G:0.10, T:0.28
Consensus pattern (12 bp):
TCATCAACAGAT
Left flanking sequence: Indices 635274 -- 635773
GATCTGATGGCTGTGAGCTTAGCGGCGCTCTTTCTCGTCAGTTTTGGTTTTGGTAAGGTTCTGAA
ATAGCTGTCTTTCTAGCGGGAAGTGGGCAGGCGGTAAGGTAGGAAGAAATTCCCTTTGTTTGGTC
CAATGTCGATTTCATATAAATTATATATATATATAATTGATTATATTTATTAACCCAAATAACCC
ATTGTCACAGGTCGGTCTGCCTCTCGTCCATGGTCGGCTTCGAGGTCGAGGTCGCTTACCAAAGG
CTAGTTCCGTGGATCGATAAAGCTGAAGCGAACGACGGCATAATCGATAAAGAGAGGTGCGGAAA
TGCCTAAAGCATATGATGAAATAGAAGAGTAGTTCTAAAAGAAAAAAATCCTATTCATACAATAG
AAGAAGTCATAATCAGAAGTCTTTGGCGGGACGTGTCCCATCTGCTTGGATCACTATTTCATACC
CTTTCTTTGGTGTCGAAAGTCCTCTTAAACTTTCGAAAGGCAAGC
Right flanking sequence: Indices 635835 -- 636334
GAGGCCCCTTTTATGAGTAAGGCGGTTCTGGAAAGTCTGGTAAAATAAGAAAGTGGCATGGCTGG
CAGTGGAAGCATCATCCGGAAGCAGTTATGAATAAGAGGTGCAGAGGTTGGTGGATGCTACGAGT
GGGTCCTTGCTCACGAGCCGTGGAAGGCTCTGACCTCGACGCTTAAAGAGGAAGGGGTACGAGAT
ACGGGGTCGCCTAACGACTAGTTGAGCTATAAAGGCAATGCTAATTGAATGAAATCCAACAATGC
TATTCTATGATATCCACGAATACAATTCATGAGATCCGCGAATGATACATAGTCAGAATCTGTCT
ATGAACGATCATCTAAGTGAGTTTAAGTTTATGATGAGCTTGATGAATTATTGCGAGGCCAGTAG
ACACAAACTGGCACAAGTAGCTATCCTACAGAAGTGGAATTGGAAGTAGATGATTTAGAAATGGA
CTTGAAGAATGATCAGCATAGTAATCTCAATTGGTGGCCATCGAG
Found at i:640266 original size:5 final size:5
Alignment explanation
Indices: 640256--640290 Score: 70
Period size: 5 Copynumber: 7.0 Consensus size: 5
640246 GGCATACTAT
640256 AATAG AATAG AATAG AATAG AATAG AATAG AATAG
1 AATAG AATAG AATAG AATAG AATAG AATAG AATAG
640291 TGCAGTTTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 30 1.00
ACGTcount: A:0.60, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
AATAG
Left flanking sequence: Indices 639756 -- 640255
AACCTTGTCAGTCAGTAGTCGAGTGCATTCGAATCCCTCTCCCGAAAAAAGATATAGTCGAGTGT
TATTTGAACCGAATCCTCAAGTGCGGGCCCTCACCCTCATTCGAAGAAATCTTCTCAACTGGACC
GGCTAATGCCATCTGATCGTCGCCCTCCCGTGCCCGCTGCTTTCGGAGATTCAATATCAAATAGT
AGGTCGGTTGGAAGGGGTCGTATAGTGGTCGAGATCGGGAATCGAACCCCGAAACATCATTCGAT
GTCGAACCAACTGGTCTTATTGGCCATAATTGGACTATAAATATCAAATACGGCGTACTTTTATT
AGCTTATTTTACATGCTCTTCAATAGAAGTATTAACAACAGGTGGCCCCTCATTTCATAACTATT
TATTTGAAGGATCAAACAGTACGATAATAGATCATGAGGAGCGGCGGATCCGATATACGCCTCTG
TGTTTTCTTGTCCCTACCTCCTTCATTAGTGAATTGGCATACTAT
Right flanking sequence: Indices 640291 -- 640790
TGCAGTTTCTCCCATCTGGCTGGGGTCCCCTTGTTCGGAAAGGCAGGAGGGGGAGAAGAGCTGCT
ATATATAGTGGAGCAGCTATAGAGAGTAGAGTCTCTGCCTTCCCTCAGTCAGTAAGAAACTATCC
GCCCGGGCCTAGATTTATTCTTCAATCCTAGGCCCAACTACGCCTACCTCTTTCATTCACTAGAA
ATCTATTTCATTCATGGGTTGACAATCCTCCAATATCTTATTCTCTCACTATGACATGTTCATCA
TTATATGTATTAAGAACTGGTCCATATACCCCCCCCTCATCCCATCCATTGTTAGGTTTTTCAAT
ACTGGATCTCATTCATTGGCTTTACTCTATTACAAATTCCTTCCTTCCAGCCAGAAATGAATTCG
AAGAATAGGGAGCTCTTGGTATTTTCTTTACCGAAGAGAATGTTAAGGAGTTCTACTAGCGCCCC
CTAGAAGGTCTGATTTCTAGCCTTCCCGACCATAGGAAGGAGGTT
Found at i:661055 original size:35 final size:36
Alignment explanation
Indices: 660991--661058 Score: 93
Period size: 36 Copynumber: 1.9 Consensus size: 36
660981 TCGATCTCGC
* * * *
660991 TTTCGTTTCGGAACTGGACTTGCTTTCGTGAAGAGA
1 TTTCGTTACGAAACTAGACTTGATTTCGTGAAGAGA
661027 TTTCGTTACGAAACTAGA-TTGATTTCGTGAAG
1 TTTCGTTACGAAACTAGACTTGATTTCGTGAAG
661059 GATGTTTGTT
Statistics
Matches: 28, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 13 0.46
36 15 0.54
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.37
Consensus pattern (36 bp):
TTTCGTTACGAAACTAGACTTGATTTCGTGAAGAGA
Left flanking sequence: Indices 660491 -- 660990
GCTAAGAAGGATCGCTCTTCGCGTGCGTACTTTTTTTCGATATCCGATATCCGATCCAGCATTTT
AGGAAAGGAGGAGGCCCCGTGAAGGAATATTTCGTAAAGTCATTTCATTGTTAAGCTACTACCGG
AGCCACTCGTTCTTTACGCCTACTCCACACGGCCAATCACATAGGCAAGTCGTAAGCATCTTATA
CCAAAAGCTCATCGACGCCTGGTAGATCAATGCGAGTCTCACGTCAACTTGCGAAACATGAGACT
CACTATACATTTTTTTTGAAGATAGGCAATCTTTCACAGGAACCGGAACCTGACCTGCACTTAGG
GCATTCACCAGCACGGCTAGAGATAGCTAACTCTTTTAATTTCCTTTCAACAAAATAGAAAATCG
AGGAAAGAGTACCTTTTCATTCACCTTTAAGGCTGACCTAGCCTTAAATTTGTTGCACGTTTCCA
CTTTGATTATGATGACAGGGTAGGCAGGGCAAGGATCGATCTCGC
Right flanking sequence: Indices 661059 -- 661558
GATGTTTGTTTTCCTAACTTCATCAAGCCAAGGTGAATAAAGAGCTTATTGATAGGAAAGGAACC
ACGCCTAAATAGAAAGAGGAAATGTGCAAGAAAGAGAAGAACCGTAGGAGGTGAAAGAGAGAGAA
AGAGAGCTTACTATTACAAATACAAATACTAAAGGGCTGCCGCAATCGTCTTAGCCTTTCAAAAC
AAGTCCCGAGCGAGGACTGATTAACCTGGCGATGCGCTGTTAGCAGGCTTGATTCAAACTTGGAG
GCTGCGAGTGGAGTAAACTACCATAGAGTGGAGTGAAATAAAGCTTTCTTTCAAAACGAACCAAA
AGAAAAAGAGCAGAATTTCAGTAATAAGGAAGAAAACGTTTTTGTCGAGCTTGATAAACTGTGTG
CAACTCCTCTTTTCTTTTCCGCAGTTTTCTTTTGGTAGTCGGTTCGTCCGCCCGTTGTTCGTTTG
TGGAAGAGCGGCTCACGACGAAACGAACAAAGACCTTACATAAAG
Found at i:661626 original size:20 final size:20
Alignment explanation
Indices: 661597--661636 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
661587 GCAGAGCTTT
*
661597 ACTCACAAAAGTC-AGGTATG
1 ACTCAAAAAAG-CAAGGTATG
661617 ACTCAAAAAAGCAAGGTATG
1 ACTCAAAAAAGCAAGGTATG
661637 TTTGTCTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 1 0.06
20 17 0.94
ACGTcount: A:0.45, C:0.17, G:0.20, T:0.17
Consensus pattern (20 bp):
ACTCAAAAAAGCAAGGTATG
Left flanking sequence: Indices 661097 -- 661596
AAAGAGCTTATTGATAGGAAAGGAACCACGCCTAAATAGAAAGAGGAAATGTGCAAGAAAGAGAA
GAACCGTAGGAGGTGAAAGAGAGAGAAAGAGAGCTTACTATTACAAATACAAATACTAAAGGGCT
GCCGCAATCGTCTTAGCCTTTCAAAACAAGTCCCGAGCGAGGACTGATTAACCTGGCGATGCGCT
GTTAGCAGGCTTGATTCAAACTTGGAGGCTGCGAGTGGAGTAAACTACCATAGAGTGGAGTGAAA
TAAAGCTTTCTTTCAAAACGAACCAAAAGAAAAAGAGCAGAATTTCAGTAATAAGGAAGAAAACG
TTTTTGTCGAGCTTGATAAACTGTGTGCAACTCCTCTTTTCTTTTCCGCAGTTTTCTTTTGGTAG
TCGGTTCGTCCGCCCGTTGTTCGTTTGTGGAAGAGCGGCTCACGACGAAACGAACAAAGACCTTA
CATAAAGTACGATCAGTGGAAAAGATGAGATCGGAGCAGAGCTTT
Right flanking sequence: Indices 661637 -- 662136
TTTGTCTAAAGAAGGAAGCGGTCCGCCCTATTACGTAAGGGCTTCAGCCGCTGCTTCACTAAAGA
CAAACAACAGACTTTGAAACCGTACATCAAGAAAAAGAGCAGTTTCCGCTCTTCTGACTTTAGTT
TCTGCGGACGGACAACTCTTCCTTTAGCAAGGTGTCGGTTGTGTATGTTTGTTGAAGGTCGGTTT
GTTCGTTTCGTCCGTGGCTTCAAACGAACAGGCTGTTTGCTTGAAAGAGCGAGCTTTCAGTCCCT
TGCTAGCTTGATTTACCTTCCGCTCTGCTCTTACTCACTTTAGTAAGGTTTTAGGTTGTCGGTTC
GTTTGTCTCGACAAAATCCGTATTACTGACCGTCTTTCTTACCGTATTATAAGCGCAACGAGACT
ACAACGAGTTGCGAGACTCAAAAGAGTGACGGCGTTAAGCTACACGAGTCCTTAGGCCTGGCCTG
AGGACTTTAGAGTCCATAGGGGAGTTCAGTCAAGCGAGCGAATTG
Found at i:666670 original size:24 final size:24
Alignment explanation
Indices: 666643--666690 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
666633 AATCATCTTA
666643 AATAGAGAGAGTAGAAAGAGAATC
1 AATAGAGAGAGTAGAAAGAGAATC
*
666667 AATAGAGAGAGTAGAGAGAGAATC
1 AATAGAGAGAGTAGAAAGAGAATC
666691 GATATCAACA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.52, C:0.04, G:0.31, T:0.12
Consensus pattern (24 bp):
AATAGAGAGAGTAGAAAGAGAATC
Left flanking sequence: Indices 666143 -- 666642
TTCTCAATGCTGGCGGGAGAACGAGAGCTGGAGGCCTTGCTCATAAGTCAATCCGAATTGTGGGC
CATATACTATACTTAAATGATTGGTTGAGCTTCAAGTGGTTATAATTCGTGATGGTTATTGATAC
GAATGTGGTAAATAGACCTGCATGCCATGACTGGGGCCCCTATCAATTTGAATTGAGAAATCCCC
GGATCCCCTTATCTGCTTAAAACATTGAAAAATCGATTAAAGATTCAAGAAAGGCCCGAAGCTTT
AAAGATGGATTCGGCCGATTGAAGTGAATGAGGCCCGGTAGAAATATGAAATGAAGGGATCCGCC
TAAACGGCTATCCGATGCCGGATGTGTTGGACTGGGTAATTCTAATATGGGAAAGACCCTACCAT
CAGAATATTATGCAGCGTTTGCTGGTGTTCAAAAATAGTCAACATCAGAGGAAAATCAAAGAATC
AGAGATAGGCGATCTAAGAATAGAAGAGAAAATGAAATCATCTTA
Right flanking sequence: Indices 666691 -- 667190
GATATCAACATTAAATAAGTCAAAAGATCAGGTTTGAATCGCCTGGTTCAGAGTTCTTTAATAAT
AATAAAATCGATTGGTGTCACTAAAATAGCGTCTGGAGTTAGGGCATCGTAAAGGGGTTGCCTTG
TAAGGGGATGTAGGTTCTGATCCCACCTTTGGAGGATGGCAGAAAGATCTCCTTTGCCGGCTAGA
CTGAATCGGCTTTTCCGTACAACGATAGCCTTAGCCGGAAAAAGACACTCTTGAATGCTTTCTTT
TTTTTCTTTCCATTTGGCTAAAGCGAAGCGATCGTCCGTAAGCTATAGGGTAGGTAGCGGCACAA
AGGTAGTCAAACGGTTGTGAGACTTGGATTTTGGCTTATGAAGAATGCGTTGTCTACTTTCTCTT
AGTCGTTGGCTTTCTCTATCGATTTGTCTCTTTTGCACGAGATGTATTCCGCAAAAACTACAGTG
ACGAAGTTGCTTTGACTACTACTGTCCTGAATCATGCATGTTGAA
Found at i:692858 original size:72 final size:72
Alignment explanation
Indices: 692699--692858 Score: 293
Period size: 72 Copynumber: 2.2 Consensus size: 72
692689 CCGGGGCACC
**
692699 GGAGCAGCCCTCCGAAAATGGGGGAGGGCTGCGATTGTTTGGGATAACAATGATCCCTCAAAGCC
1 GGAGCAGCCCTCCGTTAATGGGGGAGGGCTGCGATTGTTTGGGATAACAATGATCCCTCAAAGCC
692764 CCCCAGA
66 CCCCAGA
692771 GGAGCAGCCCTCCGTTAATGGGGGAGGGCTGCGATTGTTTGGGATAACAATGATCCCTCAAAGCC
1 GGAGCAGCCCTCCGTTAATGGGGGAGGGCTGCGATTGTTTGGGATAACAATGATCCCTCAAAGCC
692836 CCCCAGA
66 CCCCAGA
*
692843 GGAGCAGCCCCCCGTT
1 GGAGCAGCCCTCCGTT
692859 GTGGATCAAC
Statistics
Matches: 85, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
72 85 1.00
ACGTcount: A:0.24, C:0.28, G:0.31, T:0.17
Consensus pattern (72 bp):
GGAGCAGCCCTCCGTTAATGGGGGAGGGCTGCGATTGTTTGGGATAACAATGATCCCTCAAAGCC
CCCCAGA
Left flanking sequence: Indices 692199 -- 692698
CGTCGGGTAGCGGCTCACCATTTCAAAGTCTATATCTGTGGTTTCAGAAATGGAATTGCTATTCT
CGATTCAGACAAGACACTGATTTGTTTACGAAACGCTTGTCATTTTATAGGATCTCTCATTCGTC
AAAAAGGCCGTTCCTTCTTTGACCCCAATCGTTCATCTCGGATCGCTCCAGTACCTGTCCGATGG
CAGTTTTTTACGAGAATTCGAGTTCGAGAAAGGGTTCCTTCCCAAGGGTTGGGACTCTTTGTCGC
TTTTTCCTGTGTGTTCTTACTAATTCTCTTTTTTTGGTTGTGGGGCCCCTATTTGAAAACCCTAC
TCTTGAAGTACCTCCTCCGGGTGGTGGGGATAGCCCTTTCAAGGGTGTTTTTTCGGGGCCGGTGG
TCGGGAATTTGCTCATGGGCTTTGCGTATCGCCCTAGGCGATCACGAGGCCAACCTCTCCCTGGG
GCTGGGGATGGAGAAGGGCGTTTTGCCCCACCCAACCGGGGCACC
Right flanking sequence: Indices 692859 -- 693358
GTGGATCAACAGGATGTGGCGCCCGGGCTTCCACCGGCGTGCCCGCCCGTTTCCTGGCATCCTGG
CCCCTCCACCGAAGTGGAGGGCAACCCCTCTCCGACCCCTCGCGGGTCGAACCGGAATTGCCCCG
GATGGAGACAGATAAAGAAGGAGGAGCGTCGTTCATGGAAGGAGAAGGAGGCGATTGAAGACGCA
GAGAGGTGGAACGCCTATATGGCGAATTTCGAGGCTGACGTCTTCGATGCCATGACACGGGTTGC
CCGGGAAACAGGCCATTCGGCCTGGGAAACCCACGGGAAACAGGCCTTTGAGAACATCCTCCAGG
CTGCTGCTAAAAGGGGCGTTCCCCACCTCTATAGAGGCCCTGAAAGCAGGGACGCCATCCTCAGA
GTCAGAGATGGCACCGAAGCCGGCGACTTTAAAGAGTTTATCCGGGAGGCGGAGAATTTAAGGAG
GGAGGAAACGGATCCCTACTTTCAATTCTTTAGAAGCCTTGATAA
Found at i:699474 original size:18 final size:18
Alignment explanation
Indices: 699451--699516 Score: 53
Period size: 18 Copynumber: 3.4 Consensus size: 18
699441 ATCCCTTTTG
699451 TGTCATTGACATAAGAGA
1 TGTCATTGACATAAGAGA
*
699469 TGTCATTCA-ATCGAAGAAGA
1 TGTCATTGACAT--AAG-AGA
699489 TGGTATCATTGACATAAGAGA
1 T-G--TCATTGACATAAGAGA
*
699510 TGCCATT
1 TGTCATT
699517 TCTAGTCTAT
Statistics
Matches: 38, Mismatches: 3, Indels: 14
0.69 0.05 0.25
Matches are distributed among these distances:
17 2 0.05
18 12 0.32
19 3 0.08
20 5 0.13
21 5 0.13
22 3 0.08
23 6 0.16
24 2 0.05
ACGTcount: A:0.36, C:0.14, G:0.21, T:0.29
Consensus pattern (18 bp):
TGTCATTGACATAAGAGA
Left flanking sequence: Indices 698951 -- 699450
GGCTAAATTCATGATGGGGGGAAACGGCAGGGGCTTATTACCTATAGTTTTCATATTTTCTAGGA
CAAAAATAAGAATTAGATGGAATCCCGGAAACCTTACTGCGGATAGGAATCCGATGGCATAGGGT
GGGAGGGGAGCCTCTAGAAGAATCTGTGATTGACCGGAGGAAGCGTGGAAGGCTGGATGGCCCAA
GGGAGGTACACACGGTGAGAAGGAGGACCGAGAGGGAGGTGGAGGATAGAGGGAAAAAACGGTAT
GAGAGAAGGTCTAGATCGCTGTAAAAGCATTCCAGTCTGGGCGGATGAACGTCAAATCTGTGTGA
CCGACCATTCTGTTGTCAGCTCAGCGGATGCGGAATCAAAATTGTTCACTTGTCCTCCCGAACCG
TTCTTCGTAGTGGCTCCGTTCCATGCCTCATTTCATAGGGAACCTCCAAGTGGCTCTATTTCATT
ATATTCCGTCCATATCCCAATTCCATTCATTTAATATCCCTTTTG
Right flanking sequence: Indices 699517 -- 700016
TCTAGTCTATCTGTTTCTATATATGGAAAGTTAAGAACTCATCATATAATAATCGAGAAATTGCA
AGAGAAAAGAGAAAAGAAAAAAAGGAGGTTTGTGATGATTTTGCAATCTTTTCTACTAGGTAATC
TATTATCCTTATGCATGAAGATAATAAATTCGGTCGTTGTGGTCGGACTCTATTATGGATTTCTG
ACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTATGGAAGAAGGAAC
CGAGAAGGAGGTATCAGCAACAACTGGTTTTATTACGGGACAGTTCATGATGTTCATATCGATCT
ATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCTAGTTCTACCGTAT
CTTTTGTTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGCCAGAAATTCAATGC
GTAATCTCAGCATTCAATGTGTATTCCTGAATAATCTCATTTTTC
Found at i:700222 original size:18 final size:18
Alignment explanation
Indices: 700199--700233 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
700189 AAATCATTCT
700199 ATTAGATCGAATAAGTAC
1 ATTAGATCGAATAAGTAC
*
700217 ATTAGATCTAATAAGTA
1 ATTAGATCGAATAAGTA
700234 TCTTGTGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.46, C:0.09, G:0.14, T:0.31
Consensus pattern (18 bp):
ATTAGATCGAATAAGTAC
Left flanking sequence: Indices 699699 -- 700198
TTATGGATTTCTGACCACATTCTCCATAGGGCCCTCTTATCTCTTCCTTCTCCGAGCTCGGGTTA
TGGAAGAAGGAACCGAGAAGGAGGTATCAGCAACAACTGGTTTTATTACGGGACAGTTCATGATG
TTCATATCGATCTATTATGCGCCTCTGCATCTAGCATTGGGTAGACCTCATACAATAACTGTCCT
AGTTCTACCGTATCTTTTGTTTCATTTCTTCTGGAACAATCACAAACACTTTTTTGATTATGGCC
AGAAATTCAATGCGTAATCTCAGCATTCAATGTGTATTCCTGAATAATCTCATTTTTCAATTATT
CAACCATTTCATTTTACCAAGTTCAACGTTAGCCAGATTAGTCAACATTTATATGTTTCGATGCA
ACAACAAGATGTTATTTGTAACAAGTAGTTTTGTTGGTTGGTTAATTGGTCACATTTTATTCATG
AAATGGGTTGGATTGGTATTATTCTGGATACGGCAAAATCATTCT
Right flanking sequence: Indices 700234 -- 700733
TCTTGTGTCAAAATTGAGAAATTCTATGGCTCGAATCTTTAGTATTCTCTTGTTTATCACCTGTG
TCTACTATTTAGGCAGAATACCATCGCCTATTGTCACTAAGAAACTGAAAGAAACCTCAGAAACG
GAAGAAGGGGAGGAAACTGAGGAAGAAGGAGATGTAAAAATAGAAACAGCTTCCGAAACGAAGGG
GGCTGAACAGGAACAAAAGGGATCCACCGAAGAAGGCCCTTCCCTTTGTTCGGAAGAAAAGGAGG
ATCCGGACAAAATAGATGAAACGGAAGAGATCCGAGTGAATGGAAAGGAAAAAACAAAGGATGAA
TTAGACTTTCGCTTTCAAGAGACATGGTATAACCATAGCACTCTTTATGACAATGGCATTTCTTA
TTCTTATGGGGATCAAGAAGATTGGGAGTTGGAAATACTTAAACTTAAAGATAAGCAACTATTCT
GGTTTGAAAAACCTCTTGTTACTCTTCTTTTCGACTATCAACGAT
Found at i:717692 original size:24 final size:24
Alignment explanation
Indices: 717660--717713 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
717650 CAGCGTATCC
717660 CGATCTCTCTTTATCTATGAATGT
1 CGATCTCTCTTTATCTATGAATGT
* *
717684 CGATTTCTCTTTCTCTATGAATGT
1 CGATCTCTCTTTATCTATGAATGT
717708 CGATCT
1 CGATCT
717714 ATATCAGATC
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 27 1.00
ACGTcount: A:0.19, C:0.22, G:0.13, T:0.46
Consensus pattern (24 bp):
CGATCTCTCTTTATCTATGAATGT
Left flanking sequence: Indices 717160 -- 717659
TCTATCCGCCTTTTGAATCATCTCATTTTTGGGGTAGAAAAGCTTTCTTGGAGAATCCCGCCGTG
TCATCTCAGCATGCTACTTAGGAGATATAGACCCCAATTAGGAGAATCAGATCCACGAGCCTTCC
AATGAGCCTATGCTGCGAATGAGAGTCGTTAATCATATACCGCAAAATTCGATCAATGAGATTTT
TTTTTAGTAAGAGAACGAAGCCCGGGAAAAATGGCTTTCCACTGCTTTTCTCTAAGGAATGGCCA
CCCAATTGACATTGCCTCACTTTTTCCGGTATAGGAGGATCAGAAAAGATAGATTCGATTCTTTC
AATAGAGCGGAAAATCTCTCATCATTTTTCCGGTGGGGCAGATCAAAAAGTGCATTTATCATTGT
CTCTATAGAACGGAAAGTGGTAGATGGATTTGGATCGGTATATGAATTATGATAAGAAACTCTAG
ATATTCGAAGCAAGGACATGTCGTTATCCACCAAGCAGCGTATCC
Right flanking sequence: Indices 717714 -- 718213
ATATCAGATCCAATCTATCTCTATAGTCTAGGTTCCTTGACCCCAGAAAAAAGAATCGGTGGACA
AGGCATCATAACATAAGTAGTATGAGCCGTCTCAGCAAGCGTATCTCTCTATCTCTTCACCGACA
CTTCGCGAATCCTCCTCATTATATAAATCATAGGTTGAAAATATGTCATGGAAAGGGTCAACATC
ATTGCCTACCTTGCGCTACCTTATTGACATTCGATGAATCAAAGCATTCGCATAATAAAGGTTCG
CTTAGACTTCATTCGCTAAAGGATGAAGGCATTGCATTCAAGTCAAGGAGGACAAAATTGGATTT
GAAGGAGTCTTTAGGAGAGATAGGTACTATCATTGTCGAGTATCGCCATAGGCTTGCCGTAGTCA
TTAGGAGATACAATACAATACCTAGAGAGACCTAATCTAAGGGCCTGAGTCGGACAGTCCCATTG
TTACAGCAACTATTTCATAAGGCCCCATCCATCTTGTTTGGAACT
Found at i:720333 original size:21 final size:22
Alignment explanation
Indices: 720307--720352 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
720297 GAATGATTAC
720307 GAGAT-ACACAATTCCTTAATA
1 GAGATAACACAATTCCTTAATA
* *
720328 GAGATAGAGACTATTCCTTAATA
1 GAGATA-ACACAATTCCTTAATA
720351 GA
1 GA
720353 AACGATGAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 5 0.24
23 16 0.76
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.28
Consensus pattern (22 bp):
GAGATAACACAATTCCTTAATA
Left flanking sequence: Indices 719807 -- 720306
ACGCTCGGGCAGGAAGCCATCGCGCCCTTTTTTTTGCCTTAAAAGACCGTAGGAGTCAGAAGGTC
GTTCGTTCATTAGTCAGTTTGAAAAAGGATGTTCTTTCTTCCTTGCTTTTAGTCGGAAGGCTAGA
AAGGCTAGTCCTACTAAAGCAGCTTTTGCTCATCAAGTCGTTCCTCTCCTTGCCTAAGGGCCCTT
TCGTTCCACTAGCCTTACTTTTCAGAGTTGCCAAGGTGGCGTTGGTGGTATCGTATATAAGATCA
CGCCTGGTTTTAGGAACCCTCATCTAAAATGGTGTGTTCTCATCTTTTTTGAAAAAAAAAAAAGG
ATGTATAAGTGGCGGTGTTCTCGTGACTCATCGGAGCTAGGCACGTCGCTACAGGGCGACCCCTA
CCGGACCGGAGGCGGCCCGCATAGGATGATGAATGTGATTAAAGGACCAACGACGATCGTCGGAG
GAGAAGGAGTAGTAGTAGCTAATTCGGACGGAATCGAATGATTAC
Right flanking sequence: Indices 720353 -- 720852
AACGATGAATTAATCTACAATCATATTCTGGGTCTTAGATTCATGATTCTTATCTTAATAAGTAT
CTTATTCCTTAATAGAAACTCTGACTTGTACTATTCCTTAATCATGATTGAGATCTTATCTTTAT
ACGATACGATTACATGATATGTACTTCTCAAATATAAAGGAATCTTGTATCCCTGTTCATGAGTT
TACGAATGATATATGAAGTACAAGATCCCTGTTCATGAGTTTACATTGTCAATGAAGTCAAGCGA
GCGAGATGCCGTACAAGATCCTTATTTCCTTGTCTGCATCCTTATCTCCTTGCTTATTACAGATC
CCCTTATTCGCATCATTATAATCGAAGGAGACAAAAATGAGAATTGCGAGTTCCCTTTATGAGTA
AGTTGCTTGACGAATCCGAGCGAGTGAGTCTACGAATGAAGTCAGACAGCATCCGAGCGAGCGAA
GGGCGAGACTCTATCCTTTCTCAAGCGAGTTTACGAGCAGCGAGC
Found at i:754407 original size:21 final size:21
Alignment explanation
Indices: 754383--754424 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
754373 ATTATTAGTG
754383 TTCGTGCATTCTTTCATTATT
1 TTCGTGCATTCTTTCATTATT
754404 TTCGTGCATTCTTTCATTATT
1 TTCGTGCATTCTTTCATTATT
754425 GCAGGCCATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.19, G:0.10, T:0.57
Consensus pattern (21 bp):
TTCGTGCATTCTTTCATTATT
Left flanking sequence: Indices 753883 -- 754382
CCGATCTTGTTTGACTGCTTATATACATAATTAGTTAACCCTTCCCCATAGGCCAAAGGTCTTTC
TTTAGGTCAGTAGTTCGGCTTGCACATACATAACAGGGTGACCACGAAAGAAGCAGGCAAATCGC
TCTAGGTGAATAGAACCTACCTCGGAAAACTAGATAGGCTGCTTCCGAAAACGATTACTGCAGAT
CGACATCGGAGGCGGCCCAAACCTAGGCTGTGATGCTTCCTGTCGAGTACAATTAGGACTTGAAG
TTCGTTTACACAGTAAGAGAAAGACAATTATAGAGAATGGGACTAAGTCTTGAGCAACTTTTTAT
TATTATATTCTTTAATATAGCAGCAACATGACAATAACATTACAAAGCGATATAGGCATTCATCC
ATCAACCGAGAAAGACACCTACGTTACACTAACTAGGAGCGCGGTTCTTTATTCAAAATGAAAAA
ATACGTTACGAAATGAGCCGGGGGCTGGTCTGCTCATTATTAGTG
Right flanking sequence: Indices 754425 -- 754924
GCAGGCCATTATTGCAGCATTCATTATTGCAATACACATAACATACGGTTCACGCCTCCACTACA
CTAGTTATGGAGCGGGCCAGACGGAACAAGCCTTTTAGAACCATTTACTACTGCAGCTGGATTGA
AAAGCAGCCCCGGCCCCGAGAGAGCGAGATTGTGGCGCCGGCTCGGGCCGGATGGCGGAACCGGC
ATTCTTTTAGGCAAAAAAACCGCCCCCTTCCGCGACAGAGCTGCGGGCACCACTTGATTCTTCAT
CCTTCGAAAATCCCGGACTGCGAAGGCGCCGCCCAGAGACGACGCGACAAGAAAAATCAAAAGCA
GCATCGCTGCCCCGCGGATTCTTGCGCCGTCCATCACTGCAAAACAGATTGAGCTGCGGGCATCA
AGGGACCGAGATTATATACAGCAGCAGAAGCGGAATCGAAGGGGTTGGTTGGAAGGTAAGGATAG
CATGATTGCCTGTTTGCGGGTCCTTTGGATCATGGGCCACAGCTA
Found at i:764488 original size:25 final size:25
Alignment explanation
Indices: 764454--764503 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
764444 TTTAATCCAA
764454 TGAGTTCAAGTCAAAGGTCTTATTG
1 TGAGTTCAAGTCAAAGGTCTTATTG
*
764479 TGAGTTCAAGTCAAAGGTGTTATTG
1 TGAGTTCAAGTCAAAGGTCTTATTG
764504 GGTCGTTCGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.10, G:0.26, T:0.36
Consensus pattern (25 bp):
TGAGTTCAAGTCAAAGGTCTTATTG
Left flanking sequence: Indices 763954 -- 764453
AGAATAGAAACTGAATGAAGATAAAGATCTTGGTAAAGTGCGAGTCGGCGGTTCTAATTATTCAT
GAATTCCATTATCATATTATCACAATTGGATGCTCAATCTAGAAACCCCCCTTTCATGCCTTTCA
TGTTTGTAGAAAAGGTATTTTCATTCTAATCCTTTCATTTCAAGTAATTCGTTGGTTGTACAGGA
GCAGATAGTATTCGATGAAGGAAACGGAACAAACAATAGTTAATAGTTGGAGCAATCAAGATTCG
TGATGCAAGGAGCGTTGTATTAGGTCCAAAGGTTCCTTCTTGACCTATCTACAAGGATAGGCTCC
ATGATATGGAAAGACAAAATGTGGAACCTAGAAGGATAATAGGAATTACTCGTTTTAGAATAGAG
TTGGACCCGAAATCCAGGTTTTCTTTCTTTGAGAGATCGTGGAATACTTTTTTTCTTCTCATTCG
AGATATTATGTGCAATCAACCAACCTACTCTACTATTTAATCCAA
Right flanking sequence: Indices 764504 -- 765003
GGTCGTTCGTTCGATCCAATTGAAAAAGAAAAGAAATGATCACAATTGGCCAATCCAATCCAATT
CTTTTATTCCATAGGGCGAATAATTCAATAGGACGAATACCTTGTAACGAATTCCTTTCTTTAGA
ATTAGATATGCCCGCTCATTTGTCAACTGGAAACTCTCGCTTGCTTGTTTGGCGCAATCACTATC
ATAAAATCGCTTTTATAATCATCATTCATTTAAGTGGCTATCTTAGCCAGTTCCTGAGTTCATGA
GTTCATGAGTTCTAGGGCTTTCGGTAAGCTTTCATGACTCTCTTAAGCAAATCAGTCCTTCCCGG
TCTCAACTCTTGCAAAGGGTACGAATTTCAGTCTGTAAATCAATATGTCACCCTTCCCGGTGCCG
CTACCCACTTCTACTAAGGCATCGGGAATTTGTCTCTTGCATCTCTCTCTTGCTGCTTGGTTGAA
TCAGTCTCTTCTCTTTAAGCTCCTGCGCTCGGGCTTCCCTTTTAT
Found at i:764599 original size:17 final size:17
Alignment explanation
Indices: 764574--764607 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
764564 CAATTCTTTT
* *
764574 ATTCCATAGGGCGAATA
1 ATTCAATAGGACGAATA
764591 ATTCAATAGGACGAATA
1 ATTCAATAGGACGAATA
764608 CCTTGTAACG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.15, G:0.21, T:0.24
Consensus pattern (17 bp):
ATTCAATAGGACGAATA
Left flanking sequence: Indices 764074 -- 764573
ATGCCTTTCATGTTTGTAGAAAAGGTATTTTCATTCTAATCCTTTCATTTCAAGTAATTCGTTGG
TTGTACAGGAGCAGATAGTATTCGATGAAGGAAACGGAACAAACAATAGTTAATAGTTGGAGCAA
TCAAGATTCGTGATGCAAGGAGCGTTGTATTAGGTCCAAAGGTTCCTTCTTGACCTATCTACAAG
GATAGGCTCCATGATATGGAAAGACAAAATGTGGAACCTAGAAGGATAATAGGAATTACTCGTTT
TAGAATAGAGTTGGACCCGAAATCCAGGTTTTCTTTCTTTGAGAGATCGTGGAATACTTTTTTTC
TTCTCATTCGAGATATTATGTGCAATCAACCAACCTACTCTACTATTTAATCCAATGAGTTCAAG
TCAAAGGTCTTATTGTGAGTTCAAGTCAAAGGTGTTATTGGGTCGTTCGTTCGATCCAATTGAAA
AAGAAAAGAAATGATCACAATTGGCCAATCCAATCCAATTCTTTT
Right flanking sequence: Indices 764608 -- 765107
CCTTGTAACGAATTCCTTTCTTTAGAATTAGATATGCCCGCTCATTTGTCAACTGGAAACTCTCG
CTTGCTTGTTTGGCGCAATCACTATCATAAAATCGCTTTTATAATCATCATTCATTTAAGTGGCT
ATCTTAGCCAGTTCCTGAGTTCATGAGTTCATGAGTTCTAGGGCTTTCGGTAAGCTTTCATGACT
CTCTTAAGCAAATCAGTCCTTCCCGGTCTCAACTCTTGCAAAGGGTACGAATTTCAGTCTGTAAA
TCAATATGTCACCCTTCCCGGTGCCGCTACCCACTTCTACTAAGGCATCGGGAATTTGTCTCTTG
CATCTCTCTCTTGCTGCTTGGTTGAATCAGTCTCTTCTCTTTAAGCTCCTGCGCTCGGGCTTCCC
TTTTATCTCTTCTTTCTTCAGCGAACAAATCAGATGTCCTTTCCTCTGGAATCTTCCATTCCTTG
AATCTTTCTCGTGGCTCAATAAGCCAATCCGGGCTAATATGTCAA
Found at i:778388 original size:19 final size:19
Alignment explanation
Indices: 778361--778401 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
778351 TGGTACTGCT
778361 ATCGCTCGGGCTT-CTCCTC
1 ATCGCTCGGGCTTGCT-CTC
*
778380 ATCGGTCGGGCTTGCTCTC
1 ATCGCTCGGGCTTGCTCTC
778399 ATC
1 ATC
778402 TAAGAGAAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 18 0.90
20 2 0.10
ACGTcount: A:0.07, C:0.37, G:0.24, T:0.32
Consensus pattern (19 bp):
ATCGCTCGGGCTTGCTCTC
Left flanking sequence: Indices 777861 -- 778360
AGAAAGGCTCGCCAAGACTCTACCTTCGACTTGAAAGAAGCCAACACCCTCTACCCATATTCGAT
GCAGGTTTTGATTCGTCAGGATAAACCAGGCACAGACGAGCTGGCTAGAAAAAGAAAGTTTGACG
AAATTTCGTATAGAAAGAGGACTCGTTTGTTTTATGTGCGGATTGAAGTGCGTGATAGATGTTTC
CTTCACTTTTTTTTAGGAAAGCAGAATTCTTTTTTCGTTCCGGGGAGATCGAATGTTAACTAACG
ACTAGTAGTTGACCAGCCAGCGTTCAGAACCACCAGCCGAGAAGACTAGTAAAAGGAAGGATCAA
GTGAAGGAACCCAATCCTTGCTCATTTTGATTAATTTGACTAAGTTCTAAGTTCACAGTCAAATG
AAGAGGATTTGTCTCCTTATCGCTGGGAGAGGGACTTAGCTGGGCCCGCTTCGAACTCCAACAAA
TCTCAAACTCGACGTAGCTACGGCTACGCATGCACTGGTACTGCT
Right flanking sequence: Indices 778402 -- 778901
TAAGAGAAAAGGTAGCCCTTTGGGGAACTCTTTCTCTTAGATGAGAGTCTTAAGTAACTCAGCGC
TTCAAAGACAAGAGTCACGCCCCTAAAGGTCAGGCGTCAGTCATCGGTTCAATTCCGGGAGGGGC
TTCTTTTTCTGTGTCTTTTTCTTTTTTGTATGCCGCTCCGCGAGCAAGGAGCGCCACGAGCAGAG
CGAGAGAACGAAGTGGGCTGTGATGATGTCGGAATTTGCACCTATTTGTATCTATTTAGTGATCA
GTCCGCTAGTTTCTTTGATCCCACTCGGTCTTCCTTTTCCATTTGCTTCCAATAGTTCGACCTAT
CCAGATAAATTGTCGGCCCACGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTCCGA
TATACGATTTTATCCGGTTCCTATTTTATTTATTATCCCTGATCCGGAAGTCACCTTTTCCTTTC
CTTGGGCAGTACCTCCCAACAAGATTGATCCGTTTGGATCTTGGT
Found at i:799423 original size:30 final size:30
Alignment explanation
Indices: 799343--799426 Score: 123
Period size: 30 Copynumber: 2.8 Consensus size: 30
799333 GTAGAAGTCT
* * * * *
799343 ATTTAAACTACCTTCTGGCACCCGACCTGG
1 ATTTAAACAACCTTCCGGCAGCCGACCCGA
799373 ATTTAAACAACCTTCCGGCAGCCGACCCGA
1 ATTTAAACAACCTTCCGGCAGCCGACCCGA
799403 ATTTAAACAACCTTCCGGCAGCCG
1 ATTTAAACAACCTTCCGGCAGCCG
799427 GGGGGGAAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
30 49 1.00
ACGTcount: A:0.27, C:0.35, G:0.17, T:0.21
Consensus pattern (30 bp):
ATTTAAACAACCTTCCGGCAGCCGACCCGA
Left flanking sequence: Indices 798843 -- 799342
CCTTTTCCTCAGCAACTGGCTTTCATGGTTTTCATGTGATTATAGGTACTCTTTTCTTGATCATA
TGTGGTATTCGCCAATATCTTGGTCATCTGACCAAGGAGCATCACGTTGGCTTTGAAGCAGCAGC
ATGGTACTGGCATTTTGTAGACGTGGTTCGGTTATTCCCATTTGTCTCTATCTATTGGTGGGGAG
GTCGATGAAAATTCAAATGCAAATTCTGAAAAACTTCATTAGAAGAATGAGTCCCAGAATGACTC
CCCGTTTGATTTCATTTTTGAATCAAATCACTTTCTTTTTGAAATGCTTCGTCAAATTCATTATT
TTGAGATTCGTGATATCACAAATGGCTATTCTATATTCTGTTATTATTATACATATAATCACTAT
TCTTTCATACATCTTCCGTTTGTGTGTCGCTCTCTATTTTCACGATGAGCACGGTATACTATTGG
TTTTTCTGGATATCATTCAAGCTTACCCAAACCTAGTAGAAGTCT
Right flanking sequence: Indices 799427 -- 799926
GGGGGGAAAACCCAGACGAAGTGAATTTAAACAACCTTCCGGCACCCGACCCAGACGAAGTGAAT
TTAAACAACCTTCCGGCACCCGACCTGAATTTAGGGTTCCTGGAAGCGCGTTTGAACACCCTTTA
ATGGGCGAGGACCCAGAATGGATCGATTATGTTGGGACAAAACTGAATGAATCCCGGGACAACCC
GGAAGCCTTTCAGCAAGTCTTAACTTCTTTCCTTAACCAACAATAAATCTCTAATACTAAAGTGC
AAATAGAAACTTTGACTCATCTTTTTTTGAACAATTACAGCTACAGCATTGGCATGGGCGCTGTT
CTAACAGAACTTGATATCAAAGATTTTGTTAGGGAGATACTAGAGAGCAGGGGCTGGGAAAACAA
CCCCCAAAAACTCAATGAGGTTCTCAATTCGCTTATAGTATATCGAGAGAACTCTCCATATTTTA
TGGAAATCGTAGAGAAAAACCGCGACTTCATTCAAGATAAGATTG
Found at i:799490 original size:39 final size:39
Alignment explanation
Indices: 799436--799516 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
799426 GGGGGGGAAA
799436 ACCCAGACGAAGTGAATTTAAACAACCTTCCGGCACCCG
1 ACCCAGACGAAGTGAATTTAAACAACCTTCCGGCACCCG
799475 ACCCAGACGAAGTGAATTTAAACAACCTTCCGGCACCCG
1 ACCCAGACGAAGTGAATTTAAACAACCTTCCGGCACCCG
799514 ACC
1 ACC
799517 TGAATTTAGG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.33, C:0.35, G:0.17, T:0.15
Consensus pattern (39 bp):
ACCCAGACGAAGTGAATTTAAACAACCTTCCGGCACCCG
Left flanking sequence: Indices 798936 -- 799435
TGACCAAGGAGCATCACGTTGGCTTTGAAGCAGCAGCATGGTACTGGCATTTTGTAGACGTGGTT
CGGTTATTCCCATTTGTCTCTATCTATTGGTGGGGAGGTCGATGAAAATTCAAATGCAAATTCTG
AAAAACTTCATTAGAAGAATGAGTCCCAGAATGACTCCCCGTTTGATTTCATTTTTGAATCAAAT
CACTTTCTTTTTGAAATGCTTCGTCAAATTCATTATTTTGAGATTCGTGATATCACAAATGGCTA
TTCTATATTCTGTTATTATTATACATATAATCACTATTCTTTCATACATCTTCCGTTTGTGTGTC
GCTCTCTATTTTCACGATGAGCACGGTATACTATTGGTTTTTCTGGATATCATTCAAGCTTACCC
AAACCTAGTAGAAGTCTATTTAAACTACCTTCTGGCACCCGACCTGGATTTAAACAACCTTCCGG
CAGCCGACCCGAATTTAAACAACCTTCCGGCAGCCGGGGGGGAAA
Right flanking sequence: Indices 799517 -- 800016
TGAATTTAGGGTTCCTGGAAGCGCGTTTGAACACCCTTTAATGGGCGAGGACCCAGAATGGATCG
ATTATGTTGGGACAAAACTGAATGAATCCCGGGACAACCCGGAAGCCTTTCAGCAAGTCTTAACT
TCTTTCCTTAACCAACAATAAATCTCTAATACTAAAGTGCAAATAGAAACTTTGACTCATCTTTT
TTTGAACAATTACAGCTACAGCATTGGCATGGGCGCTGTTCTAACAGAACTTGATATCAAAGATT
TTGTTAGGGAGATACTAGAGAGCAGGGGCTGGGAAAACAACCCCCAAAAACTCAATGAGGTTCTC
AATTCGCTTATAGTATATCGAGAGAACTCTCCATATTTTATGGAAATCGTAGAGAAAAACCGCGA
CTTCATTCAAGATAAGATTGAGATAGAGGGATTACGCCTAGAGGAGCTGGAGAAGGATCGACTAA
GAAGGGAGCGATGAGAACCTCTGGAGCAGGAGCGGGAGCAGCTAA
Found at i:800321 original size:13 final size:13
Alignment explanation
Indices: 800303--800330 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
800293 AAAGAATCTC
800303 ATCAATCTTTATA
1 ATCAATCTTTATA
800316 ATCAATCTTTATA
1 ATCAATCTTTATA
800329 AT
1 AT
800331 ATATATTGGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.39, C:0.14, G:0.00, T:0.46
Consensus pattern (13 bp):
ATCAATCTTTATA
Left flanking sequence: Indices 799803 -- 800302
GGCTGGGAAAACAACCCCCAAAAACTCAATGAGGTTCTCAATTCGCTTATAGTATATCGAGAGAA
CTCTCCATATTTTATGGAAATCGTAGAGAAAAACCGCGACTTCATTCAAGATAAGATTGAGATAG
AGGGATTACGCCTAGAGGAGCTGGAGAAGGATCGACTAAGAAGGGAGCGATGAGAACCTCTGGAG
CAGGAGCGGGAGCAGCTAAGAATGAAGCGATCCAGATTTTTGGAGCAAGAGGAACAGAAGCAATT
AAGCGAGCGACTAAGACTGATGGGGGAAGAGGAGAAGCAGAGAAACGACCCAGGATGGAAAGGGA
AAGAAAAAGTGATTTGTAAAAGGAGGTAGTGAATGGCATGATATATGATATACATAATTACATCA
AGATACATATGAGACTTGTTCTATATTCCAATTTGTTGAATGTCAGTTGAGGATTCAGGAGGGGA
AGAGGAATCCTTGAAGTGGATTGAAAAGAAATGAGAAAGAATCTC
Right flanking sequence: Indices 800331 -- 800830
ATATATTGGTTATTATTCAGAATATATATATTATATAATATAAATACAATATAAAAGTCTTAAAT
CAAAGCAAAAAAGCGAGATTTCAGAAACTGCACTTTCGAGATGTTAGAAGGAGCTAAATCAATAG
GTGCCGGAGCAGCTACAATTGCTTCAGCGGGAGCTGCTGTCGGTATTGGAAACGTCCTTAGTTCC
TCGATCCATTCCGTCGTGGCGCGAAATCCATCATTGGCTAAACTCGGTCATCTCCCTAAGCTCAT
CGGAATGTACTCGAGCTACATCGGGTAAAGATGGTGGTCTCGCTCCACATCAGTGCTAATCGGAC
TCTGGATTCCCTAGGTTGGCTGGGGGAATCCGGAGCTTCTTCTTGATGGTTTGCGCTTGGCAACT
TAGTCCCTCTAAGGTTTTTGTCCTCATCGGCCTTCTGAATCACGAGTTGTGCTCGTTTACGCTTA
CGATGTCCAGGGCCCCTTGTGTCACGCATGAGCGCTGGGGAACGG
Found at i:805460 original size:16 final size:17
Alignment explanation
Indices: 805434--805466 Score: 59
Period size: 16 Copynumber: 2.0 Consensus size: 17
805424 GAGCCTTATC
805434 TTTTAAAGATATAAGAA
1 TTTTAAAGATATAAGAA
805451 TTTT-AAGATATAAGAA
1 TTTTAAAGATATAAGAA
805467 GGGGTGAATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 12 0.75
17 4 0.25
ACGTcount: A:0.52, C:0.00, G:0.12, T:0.36
Consensus pattern (17 bp):
TTTTAAAGATATAAGAA
Left flanking sequence: Indices 804934 -- 805433
CACTTCAAATAGTCCACTGCCAAGGCCCCCTTTGATGAGGATCTCCAACAAGATTCCCAGAGGCT
TCCAAAATTGTTTGCAATCCTCGAGGAGATCGAAGAGTCAAAAAAAGGGGTCTTTCTATCACCAT
TATTTAACCATTGGACTCTCGATTTCTTCTGATATAAGTCCTCTTCTATGATGAGTTCCTGATTG
AGATCTTTGGTAGCTTTAAGTTCATCAGCCGCAAGTGAACGATCCATAGGAGAAGCCTGGATTCT
TTTCTGTATGTCATGGAGTCGGCAAGCTCTTTGCGATTGTGTATAGACCCGAACCTCTCAGCATT
CCATTTCCTTATTCCTTATGTTTTATTTTGTCATTTTCCGTTTCTGCTGAACATGAAACATGGGA
TTGCCTTGGATGTAGGAATTCCAGGAAGAAGAAACCACTTCTTTGAAGCCCGGTTGAGAGTTCCA
CAAGGAAACGGATTTGAATGGTTTAGGACCTTTGGGAGCCTTATC
Right flanking sequence: Indices 805467 -- 805966
GGGGTGAATTGTCCGAAATAGATAGGGGAAGATAGGAAACCTGGGGAAAGAGATTTTTCCAAAAG
GAATTACGATCAAGTCTACACATTATTATTCGTGGGCCAGAATCTTTCTTGCTCCAGGAAAGAAG
CTGTAGCTCGAATGTCTGTGAGAAGGCAGGTATCAATACAGGCATTAAATGGTTTGAGAATACGT
TCAGGAACCCTCCAACCTTTTCCGAAGGATGTCGCACGCAGTTGAAGTCACCACAGACTAACCAT
GGCTTTGTAATGGATGAGGAGATGGTGCATAAAGAATTCCATAAGATGGCTCGGTCCGAGGCAAT
GTTGGATCCATACACAGCAGTAAGAGCAAATGAGAAAAGATATCCTATTCGAGTGACTTCGCAAT
GTATAGTCTGATCAGTAGCACTGATTTTGTCTATCTTAAAGACCTGTGAATTGCAAATTATCCAT
ATGCGGCCAAAAGAATGCTCCTCAGTTATACAGGTCCAAGATCAG
Found at i:824723 original size:21 final size:19
Alignment explanation
Indices: 824686--824728 Score: 50
Period size: 21 Copynumber: 2.2 Consensus size: 19
824676 AGTCCATGTC
824686 TCATTCTTCTCAATGGCCT
1 TCATTCTTCTCAATGGCCT
* *
824705 TCATCTCTTCATCCATGGCTT
1 TCAT-TCTTC-TCAATGGCCT
824726 TCA
1 TCA
824729 CCCTCAGAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 5 0.25
21 11 0.55
ACGTcount: A:0.16, C:0.33, G:0.09, T:0.42
Consensus pattern (19 bp):
TCATTCTTCTCAATGGCCT
Left flanking sequence: Indices 824186 -- 824685
ACCTTCAACGGGTCATCCCCTTCTTTGTCTTTCAGATTGACTGGAGCAGGAAGGGAGACCGTAGG
CTCACATCTCAGTACTCTTTCAAAAATCTAGGTACGGCTTGTTCAGTTCACTGGGAAGGAGCTTC
GAGCAGCACGTCCTAGCCTGGGAAAGAATCTCGTGTCGTTGTTTTCTTCCTTCATTTGAGGCAGA
AAGAGGCAATGTATCGCAACTTCGGTGACTTTGGGGTACCTATTATCCATCCTAACCTAATAAGA
GGCGGTGGTTACCTACTCTAATTGCCTGAGGGCGCTCTTTACCTAACCTACCTGTGCTGGAACAA
GCTATGCTACCACCATTAGCTTAATGTGCTGGCTTTTTGATGCAAAATGATGGTGCTAGTAAGAG
GATGCTGCCTCTGTCTCTGTGTCCGTAGCCTCAGCCTATGCCTTTAGGTCTTCACTTAGAAGATC
AACCAACCTATGATGTGAGCATCAGGTGGTGGTAGAGTCCATGTC
Right flanking sequence: Indices 824729 -- 825228
CCCTCAGAATCCCTTTCATAGGGCTTGGTGAAAGCTTCAGACACTGTTTCAGGTTCCGGTGTATG
AGAAACCTTAGTCATAAGAGCAAAGTTTACCTATTCTCTCTGAAATAGTGGGTTTTCATGTATCT
CTTTGAACTTTCCACGAGTAAGGAGGACCCTTTTATTCTCTTTCTAGTATGATTCCTCCAGACTG
AGAAAGACTTTCCACCTATCTTGGTCTCTTAGGTGGTAGCAATGTTTCATTATTTTCCCCCGAAT
CTGATGAACTGGCAGGAGGAGGCTCGAGAGACCTTGTGGTTCTGGAGCGTATGTAGACGGGAATG
ATGAGCTCTTCAAATGCCTTCTTTTCCACAGGTGTCTTCAAGAAGGGCACTGATTCATCGAAGTA
TACATCTCGACGGATGATCACTTTCTTCGGGTCATATCATTTTTACCCTTTAGTCATAGTCGGGT
ATCCAATGAATATAAGCTTTTCCCTTTTCCCCAACCACTTACAAC
Found at i:837796 original size:39 final size:40
Alignment explanation
Indices: 837741--837828 Score: 144
Period size: 39 Copynumber: 2.2 Consensus size: 40
837731 GAAGTCAAGC
*
837741 CGCTCGCTTGACTTCATTGACAATGGT-GACTCATGAACAG
1 CGCTCGCTTGACTTCATTGACAAT-GTAAACTCATGAACAG
837781 -GCTCGCTTGACTTCATTGACAATGTAAACTCATGAACAG
1 CGCTCGCTTGACTTCATTGACAATGTAAACTCATGAACAG
837820 CGCTCGCTT
1 CGCTCGCTT
837829 TCTCGCGGAA
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
38 2 0.04
39 35 0.78
40 8 0.18
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.28
Consensus pattern (40 bp):
CGCTCGCTTGACTTCATTGACAATGTAAACTCATGAACAG
Left flanking sequence: Indices 837241 -- 837740
CTTCCGGTACAACACAAGCCCGCTCGCAGCTCTTAAGGGGTATAAGGCCACCGCCTATTTCCAAA
CGATAGCATTGGGCTTGGAGGCTGGTATAACATGTGATGATGACGAGTATCGGAACACGGATACG
ATTGGGTTAGTGTGAAATGGCACTCGAAACACGAAGAATCGCATACCAATCCAACAAGATACATC
ATCCTCATCACGTAGGGCTGGATAATTGCGTACGTTCCACCACCGTTCCCGTACCATATCCTCGA
TGGCTCAGCGGTATAAAGCGGCCTTCTCACCATTCATTAGGAGAGACTAGTCTCTCCTAAAGACT
CATTCGCAGGGATCTTGTACGGCAGTCTCGCAACTAGGGGATGACTTTCAATGTAAACTCGCTCG
CTTGACTTCATTGACAATGTAAACTCATGAACAGCACTCGCGTCGGACTCGCTCGCTTGACTTCA
TTGACAATGTCAAGTCAATTCCATGAAATTTAGATGAAGTCAAGC
Right flanking sequence: Indices 837829 -- 838328
TCTCGCGGAATTGCAGACACTAAGGAAGGATGACTTGGTGGTATAAGATAATGATGAAGTTCAAT
CTCGCTAAATCGCAGACACGTGAAGTTTACGGAACGTGTCATCCAACGCGAAGTCTCGCTGAATC
GCAGACACGTGAAGTTCACGGCCTCCAACGCTTGGTGGCGCTAAATCGCTCGCTTGCTTCACTCG
CTCTTAGGCCCTCGCCGCTTTTCGAGTGCTTTACGTGTAGTTTAGGGGGCAAAGCTCGTTGGGTT
CGAATCCCTCTCTCTCCGTTCCCTCTGATCACTTGAGATTTATCTTTCGAATTCGACAAAATCCC
GAGCCTCTTTTTTCATATCATAGAAAAATGTATGGAAAAATCATAGGAAGATTCAGAAACCGGAA
AAACCTCGTCTTCTTGATTCCTCACGCCCAGGAGTCCAGGGTCATTAGATAGGAATCCGAAGATG
AAGAGAGAAAGAAAGAATATCACTACAGTGTAAACGAACTGAGAG
Found at i:844169 original size:10 final size:11
Alignment explanation
Indices: 844141--844169 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
844131 CCTTCCCCCC
844141 GCCTTTTCACT
1 GCCTTTTCACT
844152 GCCTTTTCACT
1 GCCTTTTCACT
844163 G-CTTTTC
1 GCCTTTTC
844170 TTTTTCCAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 6 0.33
11 12 0.67
ACGTcount: A:0.07, C:0.34, G:0.10, T:0.48
Consensus pattern (11 bp):
GCCTTTTCACT
Left flanking sequence: Indices 843641 -- 844140
CAGCTGGACTAGTTCTTCGTTCTGCCAAGCCAGTATCATCTTCTTTCTATGCTTCTCCGGGATCA
AAGCCATCCTGTGATTATGAGTCAGTAAGCGGGATTCTGTTGGATGACTAGAAAGAGGATCAGTA
CCAGCCGGACTCACTTCTCGTTATGAGAAAATTTGGTTCTAAGGTCAGGCATGACGACCGGTATC
AGGATCTGCCTTTGGGTCGGAGTCAACAAGATGTTCCGAGGCAGCGACGGGACCTTCTAAATAGT
AGCCATTCTTTCTTCCGAGCCTTGTTGATCAACTGGTTCTTTTGAGCATTGATCTGTTGGTTATA
AGCCTTGCACTGCGATTAAGGAGGAGTTGAACCTCCGTAGCGTTGGAACTAGAAACCGACTAATC
GCCACCCACCCGCCCTACTGAACACCAACCCAATCTCGATGAATAAAATCAAACTAAAAGCAACG
TAGTAGATTCGCAAATCCACCCCATCTCTTCCTTTCCTTCCCCCC
Right flanking sequence: Indices 844170 -- 844669
TTTTTCCAGTCTTTTCTTTTCATTTGTCGAAAAACAAACTTGATAGAGGGGGTCTGTCTTCTTTC
TTTCAATTTTCTGCTGCCTTGAGAATCCCCTCCACCCCCTTTGTCATTACCCATGGCTTGGGTAG
AGCACCGGTCGGGGGTTCCTTTACCTGGAATAGGCATAGGCGTGACCCTCATGCCCAGCCAACCG
AATTCATACGCCATGGGAAGACCCAACTCCATATTCCCGCGTATCACTTTTTTAATGAAAAAATA
TGAAACTGCGAAAGTTATGACTAAATAAAGAAAGACAGTAATAATCCCCCAAATTTCAAATAGTA
AATACTTCTCATTTGAGAAGAGTTTTTCTATAATCTATAAGAAGATTCATTTGGTTTGGTTCATT
CTTTGACTGCTCTGCTCCCGATAGAGAGACTTGCCGTACGAGTAAGATATATAGAGAGGGTTGTT
GACCAACGGAAAGCATGGGAGAAAGACAGATGCAGAAAGGGTGAG
Found at i:844835 original size:17 final size:17
Alignment explanation
Indices: 844813--844849 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
844803 TAGCGCCGTA
* *
844813 AAGGAATAACTGATTGG
1 AAGGAAGAACGGATTGG
844830 AAGGAAGAACGGATTGG
1 AAGGAAGAACGGATTGG
844847 AAG
1 AAG
844850 ATAGAAGTGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.05, G:0.35, T:0.16
Consensus pattern (17 bp):
AAGGAAGAACGGATTGG
Left flanking sequence: Indices 844313 -- 844812
GGTTCCTTTACCTGGAATAGGCATAGGCGTGACCCTCATGCCCAGCCAACCGAATTCATACGCCA
TGGGAAGACCCAACTCCATATTCCCGCGTATCACTTTTTTAATGAAAAAATATGAAACTGCGAAA
GTTATGACTAAATAAAGAAAGACAGTAATAATCCCCCAAATTTCAAATAGTAAATACTTCTCATT
TGAGAAGAGTTTTTCTATAATCTATAAGAAGATTCATTTGGTTTGGTTCATTCTTTGACTGCTCT
GCTCCCGATAGAGAGACTTGCCGTACGAGTAAGATATATAGAGAGGGTTGTTGACCAACGGAAAG
CATGGGAGAAAGACAGATGCAGAAAGGGTGAGTGTCACTCAGAAAGATGATTGAGCCACACTCAG
AAAGAGAGGCGAGTGAAAGGGCGAAGGCAATTGCTTTTCTCAATGAGATTCCCTGCAATTACATA
AAGATCTGATCTAGCGCCGTCCGAAGATACGGATCTAGCGCCGTA
Right flanking sequence: Indices 844850 -- 845349
ATAGAAGTGGAGCCCATGACCTTACTTCCACTATAAAACCTTGGACAGCTGGGACAAAGACTGTA
GGACAGACGCTCACCGACCGAAACCACAAGGAAGGATAGGCATAAAGAAATGGAGCTTCCCCACT
TGAGGCCTGACGCCTGAACCTATTCATTTTCATTCCACTCCTGAGTTGAACCGCTCTACTCAGCT
GAAGAGTCAGATGCTTTCTCTAGCTCAGTCTGAAATCGACTCCTACTTTATTATATATTCTATTT
TCATTTTAACAACTCGAGTATGAACACCGGCGCTTGACACCTTCTGCTTGAACCCGACGATATTG
CATATCCACTGAGGCTTGAAGCACTCATACTAACTGAGCCCGCCTGCTTCATTACTGACATCGAT
TGATTTAGCCCCTCGTGCCAAGCTGAAGATGAGTATTCGGCCTTACAAGAGCATCTGGGCAAGGA
AGAAGCGAAAGTTGACTCAACCAATCGTTCTATAAGCAAGGGGCT
Found at i:856360 original size:13 final size:13
Alignment explanation
Indices: 856342--856373 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
856332 CAGGTATGGC
856342 AGGTAGGGCAGGT
1 AGGTAGGGCAGGT
*
856355 AGGTAGTGCAGGT
1 AGGTAGGGCAGGT
856368 AGGTAG
1 AGGTAG
856374 CTGAGATGGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.25, C:0.06, G:0.50, T:0.19
Consensus pattern (13 bp):
AGGTAGGGCAGGT
Left flanking sequence: Indices 855842 -- 856341
CTTCAGGTTTGGGACTGTGGTAGCTAGAAGGTAGTGGTGCTAGCGGATAGATAGTGAAGGCGCTC
CTCCCTATGTTTTATCTGAATATAAGTGAGACCCGAGACTCTTATTAGTATGAGTAGTGGACATC
TAGTAGCAGTGTGAAACCATTCCTCCTAACAGCATAGATTCGTTGATGCCGGCACTGTATACTAC
TTAATATGCTTAAAACAGGCTCTATCCCTCTTGCCTGAGCTCTCTCCCTTCCCTAATAGTGCTCC
CTCCCTCATTCATAGCTCCCTAATAGCTATCTCTGCTTCCTCGCTCTCATAGCTCCCTAAGAGCT
CTCACAAAGAAAAGAGAAGTAAGGTAATATGTAATATTCACGATATCGAGCAGAGAGTTCGGGTG
CTATGCCTCTGCCAAAAAGAGAAAAGGCTAGCTTGTTTCACTTCATACTCACAGGTTCGGGATCT
ATCTCATGAGCTAAAGAAGGACAGATAGGGACTGTCAGGTATGGC
Right flanking sequence: Indices 856374 -- 856873
CTGAGATGGATAGAGCTACAGGTTCAATCCAATAAGACTAGCTAGACAGTGAAGGACGCTATGGC
TCCCTCTTCTTACGAGGAAGAGGGTTGCCTATGCTAGACTGACACTAACCGGGACGGCATACACT
CAATTACTCTCATCTGAACCCTTTACCTTTTTGTGTAGCGAGGCTGAGCCGGGTCACCATCAAAG
GCAGCATCAGCATAAGCAGGCTCGCACATCTGAGGAGGTTTAAGAAGAGGAATAGGAGGAGGAAG
AGGAAGCGAGTGAAAAGGGGAGAGGAAGATGACTATCTAAAGCCGATAGTCCGGTAGGTCCTTGT
AAGGCGAGTGGAAGGAAGTGACTTAGACAAATCTTTTTTGTCGATAACTTCAGACCAATCAATCG
AATATTGATTAATACGTAATCGATCGAACACTACTTGAAAACGGCTCTTCTGCTCAGAAACGAAA
TATTGAACCATGATTTTATTTGAGCAGATATAGGTCGCTATCAGG
Found at i:865491 original size:53 final size:56
Alignment explanation
Indices: 865411--865534 Score: 193
Period size: 53 Copynumber: 2.3 Consensus size: 56
865401 CAGTCAATAG
* *
865411 AGACTAGTCTCTCCTGCTAGAAAGACCTA-A-TGACTCA-AG-CTAGTCTCTCCTAA
1 AGACTAGTCTCTCCTGCTAGAAAGACCTACAGTCAAT-AGAGACTAGTCTCTCCTAA
865464 AGACTAGTCTCTCCTGCTAGAAAGACCTACAGTCAATAGAGACTAGTCTCTCCTAA
1 AGACTAGTCTCTCCTGCTAGAAAGACCTACAGTCAATAGAGACTAGTCTCTCCTAA
865520 AGACTAGTCTCTCCT
1 AGACTAGTCTCTCCT
865535 AATAACTGGT
Statistics
Matches: 65, Mismatches: 2, Indels: 5
0.90 0.03 0.07
Matches are distributed among these distances:
53 29 0.45
54 2 0.03
55 5 0.08
56 29 0.45
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (56 bp):
AGACTAGTCTCTCCTGCTAGAAAGACCTACAGTCAATAGAGACTAGTCTCTCCTAA
Left flanking sequence: Indices 864911 -- 865410
AATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTT
CTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTAT
ACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGATCGCCCTCCCAA
TTCGAAGTTTTTTCCTGGAAGTTTCAACCTCTATGACAACAGTCGCGACTATCAAAAGACTCGCG
ACTATGGCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTATTCTAATAGAAGACTAAAGGCCCC
TACTGAAGATTCAAAAGGCGAGCACTGAAATGAGAAAGGCGACCGAAGGGTGAACACTATCAATT
AGGAGATATAGGTACTATCATTGTCGAGTATCGCCGTAGGCTTGCCGTAGTCATTAGGTGTATCT
AGATATTGTATTGTATCGCCTACGGCTTGCCGTAGCAGTCAATAG
Right flanking sequence: Indices 865535 -- 866034
AATAACTGGTGTCAGCAGGTGCGCGGAGCGCATGTTCGCCCGCTGGGCCGCCCACTTCAGAGTCT
TCGCCTTTAGATAACATTGTCCGCCCGCCCCTTTTACTTAACCATTCTTATCTTAACTAAACCAT
TCTTATCTTTAGGGGAGGTTCAGAAAATAGAAAACTCTCCTTATCATCATTCTGATTGTTATTAG
GTCGCCAAAGACGAGAGTTTCGCCTTTTGAAGCGCCAGTAGCGTAGGGCCAGGCCGAGTCAGAAA
GGCTTTTATGACTCAAGGTTCATATTAGGGAAAGGAGAGCGAGGGGAAGAGGGGGCAGCCCTCGG
CCCGATCATCCAATTCGCTCCAACAGACAGGCATGGTTCAGTAGTCAAAGCAACTTCGTCACTTT
CGTGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACTCTGCGTAGATT
GACTGAACGCAGAAAGCCTTCCACTGGCAGGCGATCGTGTTTTTC
Found at i:865523 original size:17 final size:17
Alignment explanation
Indices: 865503--865536 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
865493 CAGTCAATAG
865503 AGACTAGTCTCTCCTAA
1 AGACTAGTCTCTCCTAA
865520 AGACTAGTCTCTCCTAA
1 AGACTAGTCTCTCCTAA
865537 TAACTGGTGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.29, G:0.12, T:0.29
Consensus pattern (17 bp):
AGACTAGTCTCTCCTAA
Left flanking sequence: Indices 865003 -- 865502
GAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTT
GGGGTACGGTCAGTTCACCGGGAGGATCGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAA
CCTCTATGACAACAGTCGCGACTATCAAAAGACTCGCGACTATGGCAGGGCGGTACGCTCTGCTC
TCTCGCGACCCCTATTCTAATAGAAGACTAAAGGCCCCTACTGAAGATTCAAAAGGCGAGCACTG
AAATGAGAAAGGCGACCGAAGGGTGAACACTATCAATTAGGAGATATAGGTACTATCATTGTCGA
GTATCGCCGTAGGCTTGCCGTAGTCATTAGGTGTATCTAGATATTGTATTGTATCGCCTACGGCT
TGCCGTAGCAGTCAATAGAGACTAGTCTCTCCTGCTAGAAAGACCTAATGACTCAAGCTAGTCTC
TCCTAAAGACTAGTCTCTCCTGCTAGAAAGACCTACAGTCAATAG
Right flanking sequence: Indices 865537 -- 866036
TAACTGGTGTCAGCAGGTGCGCGGAGCGCATGTTCGCCCGCTGGGCCGCCCACTTCAGAGTCTTC
GCCTTTAGATAACATTGTCCGCCCGCCCCTTTTACTTAACCATTCTTATCTTAACTAAACCATTC
TTATCTTTAGGGGAGGTTCAGAAAATAGAAAACTCTCCTTATCATCATTCTGATTGTTATTAGGT
CGCCAAAGACGAGAGTTTCGCCTTTTGAAGCGCCAGTAGCGTAGGGCCAGGCCGAGTCAGAAAGG
CTTTTATGACTCAAGGTTCATATTAGGGAAAGGAGAGCGAGGGGAAGAGGGGGCAGCCCTCGGCC
CGATCATCCAATTCGCTCCAACAGACAGGCATGGTTCAGTAGTCAAAGCAACTTCGTCACTTTCG
TGTACCCATCGGACGGCAGCCCTTTCGGGGGTTCCTTAGGGACCGATTCACTCTGCGTAGATTGA
CTGAACGCAGAAAGCCTTCCACTGGCAGGCGATCGTGTTTTTCAC
Found at i:897627 original size:9 final size:9
Alignment explanation
Indices: 897613--897637 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
897603 ATATTTTCTT
897613 GGAGGAGAA
1 GGAGGAGAA
897622 GGAGGAGAA
1 GGAGGAGAA
897631 GGAGGAG
1 GGAGGAG
897638 CGAATTCGGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.40, C:0.00, G:0.60, T:0.00
Consensus pattern (9 bp):
GGAGGAGAA
Left flanking sequence: Indices 897113 -- 897612
GAAAAGAAAGCTCTTCATCCCTTTGCAGCAAAGCGATCCTTAGAGAAGAAAGCAAGCTTGAGGAA
GAAAGTGAGTTTTTTGCCTTTTTGTCTTAGGTAGGGGGGAAGGATGTCGATTCGATCTCAACAAG
ACTGGAAGCGACGGCACATCCCCAGTTGTTGATCCTATTGATCCAGTCGAAGTATCTTATTTACT
TTACGTAATGTAATATGATCCTATTGATCCATCGCCTCGAACTGCTCATTAAGCGAGTGAGGCTT
TGAAAATCAAATCAGAACTGAGAGAAGAGATCGAATGCTGGTGGCAGAGCAGATGAGTCAAGCCC
GTAGAAAGGGGAAGAGCGGCCACCTAGAGAAAGCGGGGCTTCTATACTTTGACTAAAGACAACTG
TGACTAAACTAAAAGGGAGATGCTTAACCTTAACAATGCAAGTCGTATGAAACCGGACGGATGAT
GTCAAAGAGGGGCAACGAAGGACCAACCAACGACGATATTTTCTT
Right flanking sequence: Indices 897638 -- 898137
CGAATTCGGAATGGATTCATATGAGATCGAGATAGACAATGAGAGAGAGAGAAAAAAGCCTTAAA
AAGGGGAGAGCACTTAGACAATTCACTTTGAGTAGAGGGAAGTCTGCAGGTAGGAATGATTCTGG
GCGTATTACGGTTTTTCACCGAGGGGGTGGATCGAAGCGATTGCTGCGAAGAATGGATCTGAAAC
GAAGCACTTCGTCTATGGGCATTGTAGAAAGGATCGAATATGACCCCAATCGTTCATCTCGGATC
GCTCCAGTACGATGGATCGAGGGGGTGCAGCTACGCCGCCAGAGGAGATGCAACACGATAGAAGA
GTTCGCTCCGCCGCGTAAGATCCTCGAACCTACCACGGCCACTACGGACGGCCGATTTTCGTTCT
CTTCCCTGCCGGATCAAAGAAAGGTAGCTTGCTTCTCTCCTGGACTGATGGCGGCTTATGTAGTG
GTCGGCCTTCCTACCAGAATGCCTCCTTGGGCGAAGAGCCAAGCC
Found at i:899831 original size:52 final size:52
Alignment explanation
Indices: 899770--899879 Score: 211
Period size: 52 Copynumber: 2.1 Consensus size: 52
899760 TTCTTAGAAA
*
899770 ACCATCATGATCTTTTCGTCTGTACTTCACCATTCTTATCTTAAAAGACTTG
1 ACCATCATGATCTTTCCGTCTGTACTTCACCATTCTTATCTTAAAAGACTTG
899822 ACCATCATGATCTTTCCGTCTGTACTTCACCATTCTTATCTTAAAAGACTTG
1 ACCATCATGATCTTTCCGTCTGTACTTCACCATTCTTATCTTAAAAGACTTG
899874 ACCATC
1 ACCATC
899880 CTTATTTGCG
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 57 1.00
ACGTcount: A:0.25, C:0.27, G:0.09, T:0.38
Consensus pattern (52 bp):
ACCATCATGATCTTTCCGTCTGTACTTCACCATTCTTATCTTAAAAGACTTG
Left flanking sequence: Indices 899270 -- 899769
TCTATTATAAAGCTCGCTAAGCTTCGCTTCGCTTCCCCCCCCCCTTACTGAACTTCACTTAGTAG
TCTCTATAAGCGACTTTGTCAAGTCTACGAAGCTTTGCTTCTTGTAGTCGTAGTATGTATAGTAG
AGTAGTCGGCCCGTAATGCCTCCTTCCAGCCCAGAATGCCTACAGACTAGAAGCGAACCGCCAGA
AGCTCACCCTTCGGGTCTCGCTTCCAGCGCTTGAGGCCAAGCATTCTGCCAGACGTCCCGGCCTG
GGAGCCCCGTTCGCCGTTCGCCTTTGGTACTTCAGTAGCTCTTCAAAAGGCGCGACTTCAATGCA
GCCTTAACTACATTACGCAAGCCCCACCGATACCTACCTATAGAGTCAAAGTACCAGTGCCGGTG
ACTTTCTAGTAGATAAGAAAACCATCCTTTTTATTTATTATATTCTTCTCTATTCTTATCTTCTT
AAAAACATGGTTTTCTACAGAAAAAAATGGTTGACTTCTTAGAAA
Right flanking sequence: Indices 899880 -- 900379
CTTATTTGCGACTTATCTGCCGTAGACTCACTCGCTCGGTTGACTTTTTGTAATGTAAACTCAAA
ACTCACTTTGAACAGCTAGGCTAGGCGGCCAAAGGTTTCAAGGGAACCTTGGTACTTTTAAAATC
GTAGTACGACAGTAGTGACTATAAAGTAGCTGTACAACAGAATGCCGTTCGCCTTTGAGTATTGA
GTAGTACTTAAGTAGCTTAGTTTCCAAAGGTGAACAGCCCCCTGTCCTTTATATTTATAGTAGTA
AAGGGCTTCTCTGAAAAGTAAAGTCAGGAAGGAGGCATTCGAAAGGCCGACCACTATATAGATAG
AGGGGGGCATTCTGGGCCGACTACAAGACTACGACTACAGAGGCATTCTGGTAGGAAGGCTGACG
ACTACATGGAGAGATCTCTATACCAAGTCATGAGCGAAGCGAAGCCAAGCCGCCGCCTATAAGGC
GAAGGGACGAAAGCCCGGCGAAGACTGAGAAAGTATGAAAGAAAG
Found at i:908996 original size:12 final size:12
Alignment explanation
Indices: 908963--908990 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
908953 TGAAGGACTT
908963 AGCCACTGCACA
1 AGCCACTGCACA
908975 AGCCACTGCACA
1 AGCCACTGCACA
908987 AGCC
1 AGCC
908991 CTTGCAGAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.32, C:0.43, G:0.18, T:0.07
Consensus pattern (12 bp):
AGCCACTGCACA
Left flanking sequence: Indices 908463 -- 908962
GGTCGGGATTCTAAATAAAGCAAAGCTATGCACGGATCAGGTGCAAGCCAACCTTCGAGTTCGAA
AATGAGGGTCCCAGAACCAAAACAATTTAGTGGTTCTCGGGACGCCAAAGAACTCGAAATTCTTT
TTGGATCAATACTTCAAAGCCGTGGGGCGATGGAAGAAGACCAAGTCACTATGGCGACGATGTCT
TTATCCGGAGACGCTAAGTTGTGGTGGCGGACCCGGTGTGAAGACGAGCCGCGTAGCGAAATCAA
CACATGGGCAGAGCTGAAACGAGAGCTAAAGGAGCCATTTCTGCCTGGGAATGTGGCATGGATTG
CCCGGCAGAATGAATGCGCCTCAAGCACACGTTCGCGAGTATTTTCAACCATTTGATTGTTTCAT
GCATAAGATAAGGGACATGTCCGAGCAAGATAAGATTTTTCATTTGATTTGTTGAATGGCTTGCA
AACATGGGCTCCGGCGGAGCTCCGAAGACAAGGAGTGAAGGACTT
Right flanking sequence: Indices 908991 -- 909490
CTTGCAGAAGGGCTAGTCGACTTTCCATTTTGGCCATCAAATGGAAAGGATGGACCAAAAGCTAA
GCCTACCTCGAGCCACATCTGGGAAGAGCCCCAAAAAAATCCTATGAGTTGAAAGGAAAGGGCCG
CAGAGAAAAATGATGGTTTTTTTATCTGTAATGGTCCTCATATGGCACGGGACTGCCCCAAGAAG
CAGTCTCTAAACTCGGTGCAGGCAACCAAAGAAGGAGAAGAGGAAGAAGCGCCTCGAATGGGAGC
GGTTTTTTTGCTAAATGCAATTGCAAGGCAACCGGACCCAACGAAAAGGGTTGATGTACGTGGAC
GTACGAATCCATGGAAAATCGGCCCGGATACCGGTGCCGCACACAGTTTGATTGCGGATCGGATC
GGGAGGCGACTCAATTGGGACTCGTGTTGCGGAAAGATTCGAGCCGGCCCCAAGCACAACCCATT
TCGGGACTAGCTAAGAACGTCCAATTACAAATGTTCGATTGGACG
Found at i:912245 original size:22 final size:22
Alignment explanation
Indices: 912217--912260 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
912207 GGTTCGCAAC
*
912217 CTCGAAAGCCAAAGATCTATAT
1 CTCGAAAGCCAAAGAGCTATAT
*
912239 CTCGAAAGCCTAAGAGCTATAT
1 CTCGAAAGCCAAAGAGCTATAT
912261 GCCAGCTTGA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.39, C:0.23, G:0.16, T:0.23
Consensus pattern (22 bp):
CTCGAAAGCCAAAGAGCTATAT
Left flanking sequence: Indices 911717 -- 912216
CTCCTAATGACTTTCGAATCTTGCCGTAGGCAAGCCGTAGGCGAGTAGTACCTATATCTCCTAAT
GACTGGCACGAGCCGGGCCTTCGAGATTATACCACAGCCGTTGATTCTCTCTGGAAGTCGCCCAC
CCCCGGAACCCCTACTACCAACTGGGGCATTGATGGTACTTCTCCCCGATAACTTCCTCGCCTAC
TCGAGAGTTCTACTAGCCTACCTTACTGACTGAACGGAGAGAGGGAAACAGAAGGAATATATAAG
AAAGAACGAAGCGGTAGTGTTTCAGGATATTGATTACCACAAGCCAAGGAGCTTGACTTACACTG
CAAGCCGAGCCTTCTTAGGAAGTCCAAGTCGAAAGCCTGAGAACTGAAACAAGGGGTTTGTGCTG
CCTCAAAAGGCCAGGGAGAACTAGGGCCCTGCTGGTTCCAACTCGAAAGGACTATCTCGAGAATG
TGGGGCCACTATATGCTCTTACGACTAGAACAGGAGGTTCGCAAC
Right flanking sequence: Indices 912261 -- 912760
GCCAGCTTGAAAGACAAGGGCCCCCTCTGGAGTCCTCGAAAAGGGGTTGTTCCATTCAAATCCAA
ACGAAACTATGTTCAACTAAGGAGCTCTTTCTTAATAATCCTCCCGGCCTATAAGCCATGAAGCT
CTTACGCAGCTAGCCAAGGAGGCTAAAAGGCCAGAAAAGGGACCTAAAGTCTATTACCAACCCTC
TTCCGACAGAGGAAGTAAAGGCCGACCTGCATTTACTGAAAAAAATCAAGAGCTTCACACAAAAC
CAATGGCTTGGTGCGATGTACACTATCCAACAAAAAAAGGATGTGCTTTCAGCCTTCAACAAAGT
GCATACCTTATGAAATGATTGACCGAGAACAAGCATAGAACATGAAACCCCTATATAAGTTGGAC
CCTCACAAGGCCCGTGTAGCTTCTATTTTCTCGAATAGTCATTTCGCCTATTTTTTTTCTCTCAA
TAGTAGACTCCACTCGCCTAGAGTAGTTCCTTTAGTTCCATATCC
Found at i:929117 original size:11 final size:11
Alignment explanation
Indices: 929101--929137 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
929091 ATACAAGTAC
929101 TACTAAGACAG
1 TACTAAGACAG
*
929112 TACTAA-A-GG
1 TACTAAGACAG
929121 TACTAAGACAG
1 TACTAAGACAG
929132 TACTAA
1 TACTAA
929138 ACACTGCGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
9 7 0.32
10 2 0.09
11 13 0.59
ACGTcount: A:0.46, C:0.16, G:0.16, T:0.22
Consensus pattern (11 bp):
TACTAAGACAG
Left flanking sequence: Indices 928601 -- 929100
TGGACCAGAGGGACAAAATCCGCGTCAGGTGAGCAGTTCGAGAAGCAGATACAAAGGTTCATCCA
CGAGGGCTCGACGAGGACGTCGACGTGAACAGGTGGGGGAGGATGTCACACACATAGGCTACTCT
CCCATACTTAGCCAAATTTGTGCACTTGAGGCCTTGTACATAAAGAGGAAGAGTGTAGAAGTCTC
TAGAAATCTCTTGTATATACTAGTAGGCTAGAGTTATGTGGAAGACTCCAGAAGGCCTAGAAACC
TATGGAATGTAAGGGCCCTGGGTCTAGGGTACTAAGACAGTACTAAGCTACTAGGCACTAGGCAA
TACTAAAACAAATAAACAAGTAAATAAACAATAGGACATAACCTACTAAAGAAAGCTAGCTAGTA
GACCATGCTAGGCCATGCTAGGAACTAACAACAAGAAGAGGCATGCTAGGCCATGCTAGGCAGTA
GGCAATACAATACTCATAAAGTACCAATAATACTCATACAAGTAC
Right flanking sequence: Indices 929138 -- 929637
ACACTGCGTAAGCCAAGGGTTCAAGCAATTCTTTCACAAGGCCTTGACTGAGCTCAAGCTTGAAG
CAACTAGTCTGGAGCTCATTCGAGGAATAAGCAAGCCGTGCTCTACCTTGGTTCTCGGAGTCCTA
ATCTCAATTCGTCCTGAGGGAAACTTGGAGTTACGGGCACCAATTAATAGATTCAAAAGCGATTT
TCATCAGTCAATCGATAACGACATCCGGAAGATACAAGGAAAAAACGTACAGCACTTTGAGAGAG
CGCTCCTTCCTAGAATGTTCCAATATCTCGCTCTCTTTTCGTGTTGTTGCAATGCCGACCTGCTT
TTCTGAGGAATTTCTTCAAAAGTACAAGTTCTTTCTTCAACTACATAAGAAGATCAAGTCCAAGG
GGAAGGGCGAGACAAAACGGTCGAGCTTATGACCAGTGGCTTTGATTGGCCAGGGATGAGAAGAG
ATGTTGAGAAGTGCGGGTGCAGGACTTGAAGGCTAAGGGACAGAT
Found at i:929126 original size:20 final size:20
Alignment explanation
Indices: 929101--929138 Score: 76
Period size: 20 Copynumber: 1.9 Consensus size: 20
929091 ATACAAGTAC
929101 TACTAAGACAGTACTAAAGG
1 TACTAAGACAGTACTAAAGG
929121 TACTAAGACAGTACTAAA
1 TACTAAGACAGTACTAAA
929139 CACTGCGTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.47, C:0.16, G:0.16, T:0.21
Consensus pattern (20 bp):
TACTAAGACAGTACTAAAGG
Left flanking sequence: Indices 928601 -- 929100
TGGACCAGAGGGACAAAATCCGCGTCAGGTGAGCAGTTCGAGAAGCAGATACAAAGGTTCATCCA
CGAGGGCTCGACGAGGACGTCGACGTGAACAGGTGGGGGAGGATGTCACACACATAGGCTACTCT
CCCATACTTAGCCAAATTTGTGCACTTGAGGCCTTGTACATAAAGAGGAAGAGTGTAGAAGTCTC
TAGAAATCTCTTGTATATACTAGTAGGCTAGAGTTATGTGGAAGACTCCAGAAGGCCTAGAAACC
TATGGAATGTAAGGGCCCTGGGTCTAGGGTACTAAGACAGTACTAAGCTACTAGGCACTAGGCAA
TACTAAAACAAATAAACAAGTAAATAAACAATAGGACATAACCTACTAAAGAAAGCTAGCTAGTA
GACCATGCTAGGCCATGCTAGGAACTAACAACAAGAAGAGGCATGCTAGGCCATGCTAGGCAGTA
GGCAATACAATACTCATAAAGTACCAATAATACTCATACAAGTAC
Right flanking sequence: Indices 929139 -- 929638
CACTGCGTAAGCCAAGGGTTCAAGCAATTCTTTCACAAGGCCTTGACTGAGCTCAAGCTTGAAGC
AACTAGTCTGGAGCTCATTCGAGGAATAAGCAAGCCGTGCTCTACCTTGGTTCTCGGAGTCCTAA
TCTCAATTCGTCCTGAGGGAAACTTGGAGTTACGGGCACCAATTAATAGATTCAAAAGCGATTTT
CATCAGTCAATCGATAACGACATCCGGAAGATACAAGGAAAAAACGTACAGCACTTTGAGAGAGC
GCTCCTTCCTAGAATGTTCCAATATCTCGCTCTCTTTTCGTGTTGTTGCAATGCCGACCTGCTTT
TCTGAGGAATTTCTTCAAAAGTACAAGTTCTTTCTTCAACTACATAAGAAGATCAAGTCCAAGGG
GAAGGGCGAGACAAAACGGTCGAGCTTATGACCAGTGGCTTTGATTGGCCAGGGATGAGAAGAGA
TGTTGAGAAGTGCGGGTGCAGGACTTGAAGGCTAAGGGACAGATG
Found at i:936916 original size:6 final size:6
Alignment explanation
Indices: 936905--936947 Score: 86
Period size: 6 Copynumber: 7.2 Consensus size: 6
936895 ACTTTACTTT
936905 ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA A
1 ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA ATAAGA A
936948 GTCATCGATG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.67, C:0.00, G:0.16, T:0.16
Consensus pattern (6 bp):
ATAAGA
Left flanking sequence: Indices 936405 -- 936904
AAGGATCTTGTACGGCATCTCGCAACTAGGGGATGACACTATTTTCACTAAATGGTGACTCATGA
ACAGCACTCGCTCGGATGCTGACTTCATTTAAATGCCAAGGGATTACGTGTCTCATCGGTGACTG
GGCAGTCCAATAATCAGCCTTCACATCGAAAAGAGTTTCCTTTTTTAGTTTTAGTACGAAACATT
CCTTCTTCGCACATGCGGAGGGGATTATTTTCATTGAATTTGAATAGAATATATTCGGGATCATA
AGAACGGCGATTTCATTTCTGGTTGGAATCCGAATCGCCATAATGAATTTCAATGCTGATATTCG
GAAACGAGTTCATTTTTGCCGCGTGTCGTTGGTTAACACGCAGCTAAAATGAGGGGGCTCTGTAA
TTATCCCGAATATCAAAGGACATTCCGGCTGCGGGTATAAATGACTCGGTTTCGAAAATCGAAGG
CTGTGGAAGGCCACTGTGTCCCTTCTCAATGAATTACTTTACTTT
Right flanking sequence: Indices 936948 -- 937447
GTCATCGATGGTTATTCCAATTATGTTTTGCCCTTGATGTTTTGTTTTCGAAAAACACCCCGGTT
TACTCCAGGTCTCTTTCGGCCCCTCTGGAGAACCTTTAAACTCCCGTCTTCTTCTCCCTCTTCTC
TCCCAGTGAGCTCCATGAACGACGAAGAATACGCTAGTGAACTATACAACATTCTATTCTGTGAA
ACTTCCGAGCCTGGAAAAAAGTCCCAGCCCTCTATCCTAACGCACGAGAGTACTATCCAGAGAGG
CTCATCCAGATCGTCTCACAGCACCTAAGAGAAGACGACTGTCAAAGAGCCATCTATTCCGAGCC
CCTGTTGGAATTGCTTAACTCTAAACGGTCAGCCCAGTGAGTTCGTTCAACAATCCTTCGGAAAA
CGTTTTTTCGACCCTCATGTCCGACGAAGAGATCGCTAAAGGGGTTTACGACTTTGAGCTAGAGA
TTCGAACTCTAGTCAGGATAGCCGCCTTTCTACCGGATTTCCCTG
Found at i:948426 original size:39 final size:39
Alignment explanation
Indices: 948344--948426 Score: 98
Period size: 39 Copynumber: 2.1 Consensus size: 39
948334 ACAATCATCT
* * * *
948344 TTCTTGTACTCGTTCTTCTACTTCTACTTCTTCTTCTCT
1 TTCTTGTACTCGTTCCTCTACTTCTACTTCTACTTCACG
948383 TTCTTGTACTCGTTCCTCTTA-TTCTACTTCTAC-TCACGG
1 TTCTTGTACTCGTTCCTC-TACTTCTACTTCTACTTCAC-G
948422 TTCTT
1 TTCTT
948427 TAGATCCGCT
Statistics
Matches: 38, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
38 3 0.08
39 33 0.87
40 2 0.05
ACGTcount: A:0.10, C:0.30, G:0.07, T:0.53
Consensus pattern (39 bp):
TTCTTGTACTCGTTCCTCTACTTCTACTTCTACTTCACG
Left flanking sequence: Indices 947844 -- 948343
TAAGGCTGAAAAACGATAGTTGAAACTTTCACAATCCAAGGGTCTGCAAGAGAAGAAGCGCTTTC
CCTTTAGTGACAGTAGGAATTTGTCTAAAAGAAAAGGTCAATTGCCTCTCTATGGTTAAAGTTCC
GAGGATAACTCCTAGTTCCACAGTTGAAGGCCCAACATGACTCTTGGACAGTTCAGCTCAGTCCA
GTATTCCTCCTCTTTGGAGACGAGTGGCTTCCACGCTCCTCCCTTTCTGGGTCTGTCGCTTTGCC
TGAACCAAATTCAAGGAATGGTTGTCGTCCAGACCTCCCTTTTCTTTCCTAGACTTCTTTTCCTT
TGGCGGTGCGGAGCCCGCTCATTGGGGATTCAGTGGTGTAATGTTAAGAGGTGCCGCCGCCGGAC
GGGCAGACCTCTAAGGATCCGGTAAACAGGGTAGCCCCAGGTACGCTTGGGGCTGGATTGAATCC
TGCTTATCCTAGTAGCGAACCTTCTACTCGTTCCCACAATCATCT
Right flanking sequence: Indices 948427 -- 948926
TAGATCCGCTTGCCCTAGAGATAGAGAAGAGAATGGAATCTATTTTGACCCTGTTCCATATCGAG
AATTGAAGAAGTCGGATGTGGCCAAAAGCAGATTAGATCTTCTTCATACGTGTTCTCTTCTTTAA
GGCTGGTGGTACTTCCTTTAGATTACCCACCCCTATGATGATTTCTTTCAGGTGCTCTCTATTCC
CATTCCCGAAATTCCTTTCAAGTGTGTGCTCGTACCTGAGCTCAAAGACGAACTCGTCTTTTCTG
CCCTATCACGTCTTATAGTTCAAAGGTTGAAAAATGATGAATCTTTCATTATTCCTTTGGACTTA
AGAAAGGTGTGGAGGATCGAATTCATCGCGGAACTGCGAAGTTTCAGCCCTGTTGAACGGCTTAT
CACATTGGATTTGACACCGAGTTTAGGAAGCGTATTCCAAAAGCGCCTTTTGCACAATACAATGG
AGTGTCTGTTTTCGCCTGATCTATTAAGCCTGATGGAGTCTTTTT
Found at i:961930 original size:5 final size:5
Alignment explanation
Indices: 961920--961965 Score: 92
Period size: 5 Copynumber: 9.2 Consensus size: 5
961910 TAGTACTACT
961920 ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG A
1 ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG ATAAG A
961966 AGAGCCAGGC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 41 1.00
ACGTcount: A:0.61, C:0.00, G:0.20, T:0.20
Consensus pattern (5 bp):
ATAAG
Left flanking sequence: Indices 961420 -- 961919
TCTTCTCTTCTATCTATACGTGGGATACATTCCCTACTGCCTTCTTCCCAAGCAAGAAATGAACA
AGCATCCATGGCCATTAAAAGCCATGGTACTGAGACCCACCGCTCACCCAACTCACAGTGCGTGG
TCGAATTCCTAGGGCGGGCCACACCACACTATAGAATGAAGAATGATAATAGCTAGCCTTTATTA
TTTCACATTCCACGGGATTCTCCTTCTGCATCTTTTCCGAGGCTTCTTTCTCTAAGAGCGCATGC
CGAATGGGCCCAATTATGCACCTGGCTGCCTTTTTGCAAAACCCATCAATCCCCGGAGGTTGGTA
TATACGAAATACAAAGAAAGGCGGTTCTTTTTATTGAAGAAATTCCTATAAGATAAGGATAAGTA
AGAAAGAAAAAGAAAGAGGGGGCATTCCGTATTAATTAGATAGAATGAGGGAAGCCCACTTTGAT
CTTGTTCTAAAGTTATAAAGTGCGCCCATTAGCATTAGTACTACT
Right flanking sequence: Indices 961966 -- 962465
AGAGCCAGGCCAAACAACAGGCTTCTTATACTTATTAAATATAATAAAATAAATAGAAAGCCCTT
TCCCTATCTGCTCTGCCTTATCCGCACCTATCTTTTCTTTGGAATGGAAGGTTCTACTTGCATGT
GTAAAGTATATAGCAAGTAGCACTTTGGGCGGTGGTTCCTTATCTTGACTTTCGATCTGGATTCT
ATGATTATTAAAGAAAGCGAGCGATGAGATTGTCTTTCTTTTCTTGTGCGAAAGCGTCTAGAGCC
GTTGACCGACCCACGTAAGGTACTATTGGGCGGTGGTTTCTTCTCTGTCAGACTCTCTTGCACAA
GAGCGACTCTTCAATCTGAATCTATCTGCTATAACTAATTCTATAACTAAAACTAATAAAATATT
AATATATAAGATCTTTTGTAGCACGTAGGCTTTGAAGCCTTATATCAAGTGTAGTTCCGTCAGTT
AAGCCGAGTAGTGGTGGGAAAGGGCCTAGTCCGGTTCCCGACCGA
Found at i:984076 original size:32 final size:32
Alignment explanation
Indices: 984038--984127 Score: 180
Period size: 32 Copynumber: 2.8 Consensus size: 32
984028 ATAGAAAGGC
984038 CGCGCGTTCGCGCGAACTACTAGAAAGTCCCT
1 CGCGCGTTCGCGCGAACTACTAGAAAGTCCCT
984070 CGCGCGTTCGCGCGAACTACTAGAAAGTCCCT
1 CGCGCGTTCGCGCGAACTACTAGAAAGTCCCT
984102 CGCGCGTTCGCGCGAACTACTAGAAA
1 CGCGCGTTCGCGCGAACTACTAGAAA
984128 ATGGTGAGAT
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 58 1.00
ACGTcount: A:0.23, C:0.33, G:0.26, T:0.18
Consensus pattern (32 bp):
CGCGCGTTCGCGCGAACTACTAGAAAGTCCCT
Left flanking sequence: Indices 983538 -- 984037
AGCGGGCAAACAAGAAGATCTTACTGAAAAGAAATCAACCGGAGGCGAGAGGGTTTCATAAAGAC
GTATGAGAAACGGAGGGTCGAGAGAGGTGCACGATCCACCCGCTAATAAATGCTGCATAAGAGAG
TGGGAGGCCGGCCCCTGCCCCTCTGGAGGTGCACACCCATTTAGGAACATATGCAAAGGCCCTTG
GTGGGTAAAGAGAGAAGTCAATGGAGAACTACCAAATCCAATGACTTGGATTTGTTCGTACCATT
CTGTCATCGATCACTGCTGGGTCGGTTGGTTTTTTCACCCAAAAGCATCGAGAAAGGCCCAGCAT
ACTATATAGATATCTATAGTAAATGATCCGCGGTCGAATTCTTGCTATGCCCTGCATCGTGTTCG
TGTGTTTATTGAGCTTTCTTCACTTCAGCGCCATGCGCTTTGCTTCGCTTTATAGAAGAGAGAGA
CCGTTGTCTTGGGAGTGAAAAAGCAAGCGCAAGCGATAGAAAGGC
Right flanking sequence: Indices 984128 -- 984627
ATGGTGAGATCATTAGTGAAAGAAGGACCAACGACGATCCTATCCTAAAGGAGAAGGAGGAGTAG
GAGGAGTCAGTCTTCTTTGAAGATCGAGGAAAAAATCGGACAATTACGCCATTCGGAAGAAGTCT
TCTAAAGAGGGAAACCCTGTTACGAGTAAGCGGAGAGGAAAGATCTCCAGAGATTCCTATCTCAT
TCCATTCCAGTGGCTCGACCAGTAACCAATGGCGAAAACTAAAAAATCCATGGTTTCCCGGTAGA
ACCCCATTTCGACCAAGTTGCGGAACCGGAAAAAGGAAGCGGTTTTTCGCACAGCTTGCTCATAG
TGCAGGTCCCACTTGTATATCGTATTTGGCCGAAGAAGCATCGGACGGGTCGGAGTTCCTACCTT
CTTGGGACTCCATGGACCAAGATCTGCTTTCATTATATGGGCAATACCGATCCACTTTAGTGGAT
CATATGGATGTAGAAAAAGCTTATGATTTGGAGGCATTGGAAACA
Found at i:990612 original size:15 final size:15
Alignment explanation
Indices: 990592--990622 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
990582 ATCTTTGTCG
*
990592 ATGCTCGTAGCTCAT
1 ATGCTCGTAGCGCAT
990607 ATGCTCGTAGCGCAT
1 ATGCTCGTAGCGCAT
990622 A
1 A
990623 GAAGGCAAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.26, G:0.23, T:0.29
Consensus pattern (15 bp):
ATGCTCGTAGCGCAT
Left flanking sequence: Indices 990092 -- 990591
AGTGTTGGTTGGTGTTCAGTGATTGAAAGAGATGATCGGATCAAATCGAATTAGCTAGATTCCAC
TTCTCCCAGGGGAGAAGGGAAAGCACGAAGGGTAGAAGAATCAGTCTAAGGCTATGCTCCGGGTT
CTGGGAAGGTTGTTCGGTCACCCAGTTCAGTCACACCCGATGGTGATTCCTCTCTTAGCATCTTA
CCCAAGCCTTAAAGAATGAATAACTGGCTCAAAGCGTAGTGGATTTTTGCTTTTCCTGCTATCAT
TGCTAATGAATCAACTGGTATTGGACTGCTCTCAAAGGCAAGGGGGGATTACTCTTAACTAACTA
AGCCTAAAGGCTATCCAGCTTAAGGATGAAATTTCTTTTCTTATAAGGGAATACCCCGTCGGTAG
CAAAGGCAGAAGGAAAAGGCTTAGTCACCAGTTTCATACGAACTCACGAAGAAGGAAGGATGCCA
AAAATACATTCCGGCTTTCCTAAAAGGAGAAGGAGATCTTTGTCG
Right flanking sequence: Indices 990623 -- 991122
GAAGGCAAATGTGGGGTAGGCCACAAATCCCGACTTCTCTCGTCTTAGTGTAGTGGAACTAAAAT
ACCCGAGTGAAGGAAACTCAATAGTAAGAGGGGGGGCAACTCTCTGATTTTCCTGGGGTTAGGGG
AAGGAAGGCCAGTACAGCGTACTTTCATAAACATAAAGGCAAGGCGATCTTGAAAGGAAGACTTT
TTCGCAGTCCCACTACGCGTAACTAGATGGGAATAGCTCATGCCCGGCTCGAGGGAAATTCCTCT
TTGATAACATGGATCCCTTTAATAAGAAAAAGCAGCTATTCTATTGGACCGCTTCGTCCCTTGCT
TGTCCTTGAGTCGGGATTCGGTGGGTGTTCATTCTACGTAGAAGATTCAAATCATTAGCTCTGGG
TCTCCGCGAGTGAACTACTAGCAATTAAGCGACTCGGAACGAACGAATGCTTGAAAGAAAAAGAA
TAAGCGATTCCATTAGTTGGTGCCATTGATTCTGTTGTAAGGGCA
Found at i:997908 original size:12 final size:12
Alignment explanation
Indices: 997891--997915 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
997881 TACCGATTAG
997891 TGCCACGGTTAT
1 TGCCACGGTTAT
997903 TGCCACGGTTAT
1 TGCCACGGTTAT
997915 T
1 T
997916 ATAACCACGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (12 bp):
TGCCACGGTTAT
Left flanking sequence: Indices 997391 -- 997890
GTCGAACCCTTGGTGAGATGGAGAGATCAGTCCGAGAGGTAGCTTTTCTCACTCAATCAACGTGT
CTGGTACGATTTGTAAGGGGGAAATTGTTGTTTGTTCAAGCGATTCTAAGATGTTCATTAACATA
TGAACATATGAACATGTTACACGCGTATATGCCGTGTAACGCGTATCGCACATTAGCTTATAAGA
ATTAGCTCTAGCCCTCTCTTTCCTGCCTTAGGATCGAATCCCTTCTTGAAAGCCTTCTTCCCTGA
TTCTGATACCAAGTAAGGAAGAAGATGGTCAACCTCTCTTGCCTGATATTATTCTTTCAGATAGT
ATTCTACCTTTCCTATCCGAGTTGGAAGCTATTTGACTATAACTACTTCTATAAGGGAACAACCT
AGCTACTAGCTACTGGAGAGGGAAGACCGCGGACCAGTACTGACTAAAGGAAGGAATTAGCGCTC
GGGACTCTCTGGTCTGGACTCTAGACAGAAAGGTATACCGATTAG
Right flanking sequence: Indices 997916 -- 998415
ATAACCACGATTAGCATCACGATTGTTGGAAGCAAGAAGAGCAGTAGTGGACCGATCTTGAGAGG
TATGGTGATATACTTCTAATCGTTTTTCACGATTGAGAAGCATACTTTAGATTTCTTCAAATCGG
GTGTGGTGGACATGGTGTGTACTGTATTAACAACCACATCATAATCAAGATCAAGTCCGTCAAGA
ACACAACCAATAATTTCTCGATCACTCATTGGTTGTTGAATAAGAGATAGTTCATCTGTGAGCCT
GCGGATACGATCCATATATTCCGTAATGGAATATGAACCTTTGCGAATATTAGAAAGGTCATGCT
TGATCTGGTAATATCGAGCATTGGTCTGGGAGGTATAAGCCCTGTCAAGAGCCTCCCAAGTGGAA
CGAGCTGTCTTGTATCCAATAACTTGGGCAAAGACAGTAGGTCTCATTGTGGTATGTAACCAACT
GAGAAGGATCTGATCCTTCTTCTTCCATTCAAGATAGGCTGGATT
Found at i:1002980 original size:17 final size:17
Alignment explanation
Indices: 1002952--1002995 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
1002942 GAGCGAGTGT
*
1002952 GAACTAAACCATTCTTA
1 GAACTCAACCATTCTTA
* *
1002969 GAAGTCAACCATTCTTT
1 GAACTCAACCATTCTTA
1002986 GAACTCAACC
1 GAACTCAACC
1002996 TTTTTTCTCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.36, C:0.27, G:0.09, T:0.27
Consensus pattern (17 bp):
GAACTCAACCATTCTTA
Left flanking sequence: Indices 1002452 -- 1002951
TTACCCAGCAGTGGAGGAGCTTGCTCAAGAACCGAGAGCCGTCCAGTCCCTGGCCGGCCGGAGGG
AGCTTGCTTATAGAAAGAAGATAGGCCGGCCCTCGTTCGGTCAGGTGTTCTTCGGCCACCAAGAA
CAAGCAAGAAAGAGGCTCTCCGCTCCTAGTCACTAAGTAGTGCTATTCCGTCCTGTGCCCGTTGT
GTTGTGCGAAGGTTCTTTCTCTCACGTCATTTCGCTCGCCCGTTCCACTTCCGTGCCGGAGGAAA
TGGCCCATGATACAATCTTGTTGTATGTCGATTTAGCAAACCAATGCCTTAAGCCACTCAGCCAT
ACCTCCAAGTTGTTGATCGGAATTGGATGTGCCGGGAGGTTGCCCGAAGGGCTATCTGATCCGAT
CAACAGCGTAAGGCGAATAGCAAGCGATAGATGAGAACCGGAGAGCTGTGGTGACTCGTGGAGTA
GGCAGCGAGCGGAGCCAGAGTTGACTACGCGAGCCGAGCGAGTGT
Right flanking sequence: Indices 1002996 -- 1003495
TTTTTTCTCTTGAGTTTTGATGAAATTCTCAAAAAATAGAATAATAAGGTTTAAAGGAAAGGAAG
AAAAGAAGGAAACGCTGTTCATATCGTAAGTTCGTAAACTCATGAAAATGGAAGACGCTCGCTTT
TCTCTTAAAAGAGAAGAATGGGATAAGAATGAGAAGATAAAGGGTAACTGAGACTTTGCTACTTT
GCGACTTTTCTGACCATTCTTCTCTTAAAAGACTTGACCATCATGATATTCTACTCTACGAATCT
GACCATCCTTATCTACTTACCTTATTCTACTTCACCATCATGACACTCTCAAATTCTCCGAATCG
ACTCTACTTCACCATCCTTATTATCCTATCCTTACTGTACTGAGCGAGACTCCATCTTGATCTAA
TACATAAACCGTCACCCTTTGGTACTCTTTCTGGAGTGTGGGGCTTGCGGTTCATAAGAGAAGAC
CAATGTTCAATTACACCAAAGGCTTGAAGGTGAAGGGCCACTATA
Found at i:1012465 original size:12 final size:12
Alignment explanation
Indices: 1012448--1012473 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
1012438 AACTCTCACT
1012448 AGAAGTTCGAGC
1 AGAAGTTCGAGC
1012460 AGAAGTTCGAGC
1 AGAAGTTCGAGC
1012472 AG
1 AG
1012474 CATCAACCAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.15, G:0.35, T:0.15
Consensus pattern (12 bp):
AGAAGTTCGAGC
Left flanking sequence: Indices 1011948 -- 1012447
ATGATTCTTTCCCTTTGTAGTGGTCGGTCCTAAAGGCAAGAGCAGTTCCAGGTGGTCCAGTGGAT
TAAGCCATTGATCATGGGTCAACGACGGAACGAAGAAGTCAAGTAGGTTCCTCATTAATAAGGCA
AATCTGGAATCTTTGATGAATAGTGGGACCGGATAGCCAGATCCGGATAGGGGCACAGGCCTGCC
ATTAATAAAGAAGAAAGCCCAGGCAAATACTGAATCTTTTCATACTTATCCCGATCTTGCTTTTC
GGGCTTTCCGAATCCTGTATGTGAGGAATTCCGCCCTGGCTTTCTTTCTGGGTTCCCCTTCCCTC
GAGCCTGGTCCCAGAGCAGCCCTTTCTATGGGATCTGGATCGATGACTACGGGCGCTATTCCTGG
CTAACCTAAAGGCACAAATAAATGCATAAATAGAGGCATTCCTCTTCTAGCTAGGTATCCCGGTT
GAGTATATGTCGAATAAGAGCTCTCTGCCCGCGGGAACTCTCACT
Right flanking sequence: Indices 1012474 -- 1012973
CATCAACCACTTCTTTTGTAATAGAATCGGTTGTTAACATAACAGAGTAGGGTGCTCCTCTCTTC
CCAACTAATTGCGTAAGAGAAAAGAAAAGAATAGAAGGGTGTGCTTGCCGCAGAGCAGTAGTAGA
GGAGCTCGTCTTTCCTGTGTTGTTAGCTCTTCGTCGGAGTATATATATGTAGGAGCAGTTGCTTT
AGTCGCAAGTTCAATAGTCTAAGGGGTACACAATTTCCTCTTTCGGTAAGGGATATGCTTTTGAA
TCTCTCTCTTTCTTCAGTCTTTATCTTTTTCTCTTCTCCTGTTCTCAATCTTTTGATTTCTTTGA
ATTTTTCTGCTTGGGTTAGGTCAGTTATGAGGTTGCAGGTCTATCGGTTAGTCGTGGATTTGTTA
GTGAGTGTCGGAACGAGGAGCGAAGTCCCAGGCAGGTGGGGCGTCAGCCAGGCATCAAGTCGATA
GAGCAAGGAAGAAGGAGGGCAAGAGGAGACAACAGCCAGACAGGT
Found at i:1045209 original size:7 final size:7
Alignment explanation
Indices: 1045197--1045227 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
1045187 ACTTCCTTTC
1045197 CTAGTAG
1 CTAGTAG
1045204 CTAGTAG
1 CTAGTAG
1045211 CTAGTAG
1 CTAGTAG
*
1045218 CTAGTTG
1 CTAGTAG
1045225 CTA
1 CTA
1045228 TCCTAGTAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.26, C:0.16, G:0.26, T:0.32
Consensus pattern (7 bp):
CTAGTAG
Left flanking sequence: Indices 1044697 -- 1045196
CTGGCGAAAAAGCCTGGAAGTAGACGAGATGGCAGAATTGGGAGGGGATCGAATTCCCACAAAGA
TATGAACTTCCCAACCAGCCCGCCCGAATCGTTCAATCAATAGTGGTAATAAAGGTAATAAGAAG
GATTTCGCTTATGGCGGGAAGGAATCCCATAAAGCAATCTATTTGTGTCGCCCCCCGGAAAGGGA
ATTAAGCTATCAATTGAGCTTCCCCATCCCCTTGAGTTTAGGTTTAAAGGAGTACCAGGGAATTA
AGTCATTTATGTATGTAGCTGCTTCTTGCGATACAAGAATAAGGGAAATCAATAAATTGCGTTAA
TATTAATAAAGGAAATCAAGCTATGTCGATCGGCGGGGAAGAAAGCAACCAATTGAGCTTATGGG
TAGCCTTGTTGATTGAACGAAAAGACCCCGGCGGATAGAGAAGAAAGGAAAGCAAAGACAGATTG
GAATGGATTAGGTAGCTCTTTTTCTTGGATGTGGGACTTCCTTTC
Right flanking sequence: Indices 1045228 -- 1045727
TCCTAGTAGTTCTCTTTCTCCTATCCGAGTAGCGGACGATGTTCTTTCTTATTATTTCTTTTCTT
ACATTGTCCTCTCGTCCTGTATCTCCCTCAGCAATCAAACTACTGCGCTAACGAACAAGCAAGGG
ATTTAGCGCAGATGAAGTCATGGCCTATGTTCGAAAGAGAAGACTGAGTCTTATTACTACTAGTC
TGATTCTTATTTCATAGTGCTTTTCTTGCCATTGTTCATTCTTCTTTGAAGTCTTAAAATGATAG
TGAGGCAGAAAGGATCCCTCAGTGACAGCAGGCCATGTCTGAGGAATTGCCAGTCTTGCAGAAGA
CGTCGTTCATTACCATATCAGATAGAGAGGGGTTCCAAACCTCTTCCTGACGGAAAGACAACTAT
TGAGGGAAATTCAGACTCACTCTTGGCTGAGAAGACTTTTGCCCCACTGGCAAAGGTTACTTTTG
TAGGGCTCTGATTGCAGTTGCCACGGTGAGAAAGTAGCCTTCGTT
Found at i:1051785 original size:24 final size:24
Alignment explanation
Indices: 1051752--1051799 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
1051742 CCCTCCCCTT
*
1051752 AAGATTCCTCACCGCCTGGGTATG
1 AAGATCCCTCACCGCCTGGGTATG
* *
1051776 AAGATCCCTCACTGCCTGGTTATG
1 AAGATCCCTCACCGCCTGGGTATG
1051800 TTTGCAAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.21, C:0.29, G:0.23, T:0.27
Consensus pattern (24 bp):
AAGATCCCTCACCGCCTGGGTATG
Left flanking sequence: Indices 1051252 -- 1051751
CGGAAAAAAGATAGAAGCCTCAGAGTAGTCCTAAGCGGTCTTCAAAACCGGTTAAAGGACCCGTA
TTGGGGAAGCGACTCTGGGTCAGACGATGATGAGGTCCTACCTTTCATAGTTACCTTAGCCCGGT
AAACCCGAAAAGCTGGTGGAAAAAAACGTCCGAGCACCCTCGATTATATACAGTCTGACGATCAC
CTCATATTGAGAAAAAGTCTCGAGATTGAAATGGGACAGCAGGATCCCTTAACTCTTGTGTTCTG
TGTGCAGCTTTAACGCAGAACTTCGATTTCCTTTTATTGATTTAGTCAATCCAGCAGTTAACTAA
AGAGTTAACATGACCAACTTGAACATTGTTCCGATAAAACCCATCAGACGAACGATCCAAAGCGA
CTAGTAGGGGGGAGTGGACCTTATCCCATTACTTCCTCTCGCCTGGAATTCTCCCAGTAAGCTGA
TCAGACACAGCCCTGGACTTCCCTTCACTACCAACCCCTCCCCTT
Right flanking sequence: Indices 1051800 -- 1052299
TTTGCAAGTTGCAGAAAGCATTGTATGGTCTTAAACAGGCATCACGCGCTTGGTATGATAAGTTT
TATAGCTTTCTAATCAGTAAAGGCTTTCTTATGAGCCGTAGTGATTCCTCGTTATTTATTCAAAC
TAACAGTTTGCGAACTACAATTCTTGCGGTTTATGTGGATGATATTATTATAACTGGCAGTGATA
CCTCTTATATCTCCACTCTAATCACTGAATTCAGTGCTCAGTTTGCTATAAAGAACCTCGGGAAC
TTGAACGATTTTCTGGGCATTGAGGTACTCAAGACAAGAATGATCGTGGACTGTTTTTAACACAG
CAAAAATATGCGTTGGATCTCCTCCAGAGAGCTGCTATGCTGAATTGTAAGCCCTGCTCTTTTCC
AATTCACTTTAAAATCAGTCCTCTGCTGCAGTCTCTTCTACTCCATTTAATAATCCATCTCTGTA
CAGAAGCATCGTTGGAGCCGGAGCCCTGCAGTATATAACTATTAC
Found at i:1093902 original size:25 final size:20
Alignment explanation
Indices: 1093853--1093891 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
1093843 AATGACCTAT
1093853 GGAGATGTGATGAAGCAACG
1 GGAGATGTGATGAAGCAACG
1093873 GGAGATGTGATGAAGCAAC
1 GGAGATGTGATGAAGCAAC
1093892 CTGCAGGGAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.36, C:0.10, G:0.38, T:0.15
Consensus pattern (20 bp):
GGAGATGTGATGAAGCAACG
Left flanking sequence: Indices 1093353 -- 1093852
TCCCCGATTCTCTGAAACATGAAGTTCATGCTGTCAAGGCAAGATAGATTAGATGCCCACATCTC
TCTAAGAAGAGATCCATTTGACAGGCTTTCAGGAATCACCCGCAAGAACTACGATTTTGAACTAA
TGAACATGGCTTTTGAGCCCACTTCCGATCAGAGTCTTCGCCGTCTAGCTAGCCTTAGAGCTTCC
TTGACACTTGACATTTGCTTTCTCTGACCCTAGGAAGGAGACCAAAACCTCTTGGTTGACCTGAT
CTACGACCAACCTCAACTTCTAACCTTGGCTATTGAGGAAATAGATTCTATGGCCAAGTTTTGAC
GTTTTTTGGCCTGTTCTTGGCATTGAAGGTCCCATCCTTACTACCCCCTTTCACTTCGATTTCTT
ATTAGGCAACTTGCATTGGCAGAAGGAACCTCTTTATCATCAGACGCGCCACGCCTTCGCCTTCA
AGCTGCTGGGTTGGACCCCCTTCTTCACAGTCCGAAATGACCTAT
Right flanking sequence: Indices 1093892 -- 1094391
CTGCAGGGAGACTTCAACTTGAGACTTGAGACGACTAGCTGCAGGAAAGGAGGACTTTTTGCTGT
CTCACTCAATCAGAGTACTTGTACCCCAAAGGGGAAGGGGGAGGCCTTCAAGAAACAAAGAAGAA
TCATTCCTCTCGCGCGCAACCAAACCCTCTTTCTTTTTCTCCCAGCCTGTCTGTTGAAGCTGACG
AGCTTGAATCTGCTACAAAATCCCGATGAAAACCTCTTCCGGTCTTTCCACCAGCTCAATGCATT
TGACCAGCTTCTACTGGTTCCGTTAGAGATCTATTCTAAGGCCATGTTCTTTACTGATTGATCTC
TGTTCGACGCCTTGAGACGATCACCTGACTGACCTCGAGAACTACGATTTCTTCTTAGTCAACTT
GACTTGTTTGTCAGAAGGAAGCGATCAAGAAGAAGACTGGCTTTCAAGCAAATCCTTTGAACTGC
AGTCCGAAGACCCATTCCCCGATTGAACCTCAAAACCGGAGCCAA
Done.