Specifications ============== Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt10/NC_042758.1/NC_042758/Repetitive_sequence/123.misa.ini" Definement of microsatellites (unit size / minimum number of repeats): (1/10) (2/6) (3/5) (4/5) (5/5) (6/5) Maximal number of bases interrupting 2 SSRs in a compound microsatellite: 100 RESULTS OF MICROSATELLITE SEARCH ================================ Total number of sequences examined: 1 Total size of examined sequences (bp): 1101768 Total number of identified SSRs: 122 Number of SSR containing sequences: 1 Number of sequences containing more than 1 SSR: 1 Number of SSRs present in compound formation: 5 Distribution to different repeat type classes --------------------------------------------- Unit size Number of SSRs 1 72 2 35 3 8 5 5 6 2 Frequency of identified SSR motifs ---------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 total A - - - - - 16 3 1 2 1 23 C - - - - - 6 1 3 1 2 13 G - - - - - 5 2 1 1 1 10 T - - - - - 16 4 3 1 1 1 26 AG - 1 1 AT - 5 4 4 1 14 CT - 1 1 2 GA - 2 2 TA - 6 4 2 3 15 TC - 1 1 ATA 1 1 2 ATT 1 1 CAA 1 1 TAT 1 1 TTA 2 2 TTG 1 1 AATAG 1 1 ATAAG 1 1 GTATA 1 1 2 GTATT 1 1 AATGGC 1 1 ATAAGA 1 1 Frequency of classified repeat types (considering sequence complementary) ------------------------------------------------------------------------- Repeats 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 total A/T - - - - - 32 7 4 3 2 1 49 C/G - - - - - 11 3 4 1 2 1 1 23 AG/CT - 5 1 6 AT/AT - 11 8 6 4 29 AAC/GTT 2 2 AAT/ATT 4 1 1 6 AAGAT/ATCTT 1 1 AATAC/ATTGT 1 1 AATAG/ATTCT 1 1 ACTAT/AGTAT 1 1 2 AAGAAT/ATTCTT 1 1 AATGGC/ATTGCC 1 1