123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_042758
Parameters: 2 7 7 80 10 50 500
Length:  1101768

Tables:   1   

This is table  1  of  1  ( 113 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2313--2348	18	2.0	18	88	0	54	41	25	25	8	1.83
35174--35255	28	2.9	28	83	3	101	21	25	23	29	1.99
68733--68766	17	1.9	18	88	5	52	17	8	38	35	1.81
70868--70962	35	2.7	35	100	0	190	30	33	32	3	1.74
71045--71103	26	2.3	26	100	0	118	28	22	32	16	1.96
71057--71120	26	2.5	26	89	0	92	32	21	23	21	1.98
71621--71659	17	2.3	17	100	0	78	28	12	28	30	1.93
76123--76173	16	3.2	16	83	2	59	7	29	15	47	1.74
76140--76169	15	1.9	16	93	6	53	0	30	13	56	1.37
76960--77008	24	2.0	24	84	0	62	28	28	18	24	1.98
77024--77082	23	2.7	23	80	19	72	40	15	28	15	1.87
77494--77527	15	2.3	15	94	0	59	32	35	5	26	1.81
151200--151235	18	2.0	18	94	0	63	38	16	13	30	1.88
152436--152476	21	2.0	21	85	0	55	24	29	19	26	1.98
166364--166404	19	2.2	19	87	12	59	4	36	7	51	1.51
180063--180101	17	2.3	17	100	0	78	28	12	28	30	1.93
180146--180195	23	2.2	23	100	0	100	46	14	18	22	1.84
193878--193903	6	4.3	6	100	0	52	19	46	19	15	1.85
194154--194178	13	1.9	13	100	0	50	64	32	0	4	1.12
199816--199901	43	2.0	43	95	0	154	22	26	19	31	1.98
208474--208644	31	4.6	36	66	22	111	40	18	16	25	1.90
208579--208644	31	2.1	31	100	0	132	39	18	13	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
242669--242793	24	5.2	24	94	0	205	34	5	31	28	1.80
260935--261065	68	1.9	67	83	11	169	30	22	27	19	1.98
291300--291336	19	1.9	19	100	0	74	16	27	10	45	1.80
299876--300014	69	2.0	69	83	5	174	25	20	24	29	1.99
303198--303267	31	2.3	31	97	0	131	27	25	14	32	1.94
303536--303569	17	2.0	17	100	0	68	29	29	11	29	1.92
309903--309941	17	2.3	17	100	0	78	30	28	12	28	1.93
310121--310161	22	1.9	21	90	5	64	29	29	7	34	1.84
310223--310290	29	2.3	29	100	0	136	29	10	25	35	1.89
329491--329543	18	3.1	17	76	13	54	24	13	37	24	1.91
338511--338544	17	2.0	17	94	0	59	38	0	44	17	1.49
339283--339309	3	9.0	3	100	0	54	66	0	0	33	0.92
359396--359449	24	2.2	24	100	0	108	31	20	40	7	1.80
367434--367483	20	2.6	20	87	6	77	48	10	26	16	1.77
388811--388840	15	2.0	15	100	0	60	40	20	20	20	1.92
389547--389706	72	2.2	72	96	0	293	23	28	30	17	1.97
397528--397564	12	3.2	12	77	14	51	21	29	8	40	1.82
406015--406043	14	2.1	14	100	0	58	27	6	20	44	1.77
408528--408643	58	2.0	58	100	0	232	18	29	25	25	1.98
417585--417624	20	2.1	19	90	4	62	40	17	32	10	1.83
417793--417839	24	2.0	24	87	8	69	59	4	19	17	1.53
425390--425414	9	2.8	9	100	0	50	0	60	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431055--431096	22	1.9	22	95	0	75	19	26	23	30	1.98
440426--440477	27	1.9	27	92	0	86	21	38	7	32	1.82
467492--467527	18	2.0	18	94	0	63	30	33	2	33	1.72
475186--475345	5	32.0	5	88	0	194	31	0	20	48	1.50
475187--475345	15	10.6	15	91	1	221	30	0	20	48	1.50
479141--479186	22	2.1	22	95	0	83	30	17	32	19	1.95
479630--479718	33	2.7	33	94	0	160	26	15	23	33	1.95
485030--485156	21	5.9	21	85	2	164	47	14	5	32	1.68
485200--485290	33	2.8	33	95	4	161	41	23	18	16	1.90
486975--487005	6	5.2	6	100	0	62	35	16	32	16	1.91
488068--488206	69	2.0	69	83	5	174	25	20	24	29	1.99
503707--503754	25	1.9	25	95	0	87	29	37	8	25	1.85
536889--536937	25	2.0	25	95	0	89	34	0	42	22	1.54
541447--541472	13	2.0	13	100	0	52	15	23	15	46	1.83
542757--542815	19	3.3	19	67	26	56	23	11	13	50	1.74
542751--542822	34	2.1	34	97	0	135	27	9	15	47	1.77
543204--543233	15	2.0	15	93	0	51	13	23	13	50	1.77
568771--568807	19	1.9	19	94	0	65	24	35	13	27	1.93
572298--572323	13	2.0	13	100	0	52	23	30	30	15	1.95
574319--574354	15	2.3	17	86	13	51	11	16	22	50	1.77
580221--580266	24	1.9	24	100	0	92	41	13	8	36	1.75
584153--584179	13	2.1	13	100	0	54	14	14	0	70	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
594681--594740	5	12.0	5	92	0	93	35	0	20	45	1.51
601323--601362	21	1.9	21	94	0	71	32	17	10	40	1.83
604116--604161	23	1.9	24	91	8	76	21	17	36	23	1.94
606215--606240	13	2.0	13	100	0	52	15	15	23	46	1.83
632817--632854	20	1.9	19	94	5	67	0	34	0	65	0.93
635774--635834	12	4.8	12	73	15	52	37	24	9	27	1.87
640256--640290	5	7.0	5	100	0	70	60	0	20	20	1.37
660991--661058	36	1.9	36	84	3	93	23	14	25	36	1.93
661597--661636	20	2.0	20	85	9	55	45	17	20	17	1.86
666643--666690	24	2.0	24	95	0	87	52	4	31	12	1.58
692699--692858	72	2.2	72	96	0	293	23	28	30	17	1.97
699451--699516	18	3.4	18	69	25	53	36	13	21	28	1.91
700199--700233	18	1.9	18	94	0	61	45	8	14	31	1.75
717660--717713	24	2.2	24	90	0	90	18	22	12	46	1.83
720307--720352	23	2.1	22	84	8	58	41	15	15	28	1.87
754383--754424	21	2.0	21	100	0	84	14	19	9	57	1.64
764454--764503	25	2.0	25	96	0	91	28	10	26	36	1.88
764574--764607	17	2.0	17	88	0	50	41	14	20	23	1.89
778361--778401	19	2.2	19	86	8	57	7	36	24	31	1.83
799343--799426	30	2.8	30	90	0	123	27	34	16	21	1.95
799436--799516	39	2.1	39	100	0	162	33	34	17	14	1.90
800303--800330	13	2.2	13	100	0	56	39	14	0	46	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
805434--805466	16	2.0	17	94	5	59	51	0	12	36	1.39
824686--824728	21	2.2	19	83	8	50	16	32	9	41	1.80
837741--837828	39	2.2	40	90	8	144	25	26	20	28	1.99
844141--844169	11	2.7	11	94	5	51	6	34	10	48	1.64
844813--844849	17	2.2	17	90	0	56	43	5	35	16	1.71
856342--856373	13	2.5	13	94	0	55	25	6	50	18	1.70
865411--865534	53	2.3	56	90	6	193	29	28	15	26	1.96
865503--865536	17	2.0	17	100	0	68	29	29	11	29	1.92
897613--897637	9	2.8	9	100	0	50	40	0	60	0	0.97
899770--899879	52	2.1	52	98	0	211	25	27	9	38	1.86
908963--908990	12	2.3	12	100	0	56	32	42	17	7	1.77
912217--912260	22	2.0	22	90	0	70	38	22	15	22	1.92
929101--929137	11	3.5	11	78	14	51	45	16	16	21	1.84
929101--929138	20	1.9	20	100	0	76	47	15	15	21	1.82
936905--936947	6	7.2	6	100	0	86	67	0	16	16	1.24
948344--948426	39	2.1	39	82	8	98	9	30	7	53	1.61
961920--961965	5	9.2	5	100	0	92	60	0	19	19	1.36
984038--984127	32	2.8	32	100	0	180	23	33	25	17	1.96
990592--990622	15	2.1	15	93	0	53	22	25	22	29	1.99
997891--997915	12	2.1	12	100	0	50	16	24	24	36	1.94
1002952--1002995	17	2.6	17	85	0	61	36	27	9	27	1.87
1012448--1012473	12	2.2	12	100	0	52	34	15	34	15	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1045197--1045227	7	4.4	7	95	0	53	25	16	25	32	1.96
1051752--1051799	24	2.0	24	87	0	69	20	29	22	27	1.99
1093853--1093891	20	2.0	20	100	0	78	35	10	38	15	1.81

Tables:   1

The End!