Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt1/NC_052751.1/NC_052751/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           143664
Total number of identified SSRs:                 33
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	19
2	13
3	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	total
A	-	-	-	-	-	4	1							5
C	-	-	-	-	-	4		1	1					6
G	-	-	-	-	-	1	3							4
T	-	-	-	-	-	2	1	1						4
AT	-	3	1	1	2	1							1	9
TA	-	1	2					1						4
TAT	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	16	17	total
A/T	-	-	-	-	-	6	2	1						9
C/G	-	-	-	-	-	5	3	1	1					10
AT/AT	-	4	3	1	2	1		1					1	13
AAT/ATT	1													1