Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_066407
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 335372
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Found at i:5405 original size:24 final size:24
Alignment explanation
Indices: 5346--5412 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 24
5336 TGGCTTTTAC
* *
5346 GAAAGAAAGTGAGTTAGACAAAAA
1 GAAAGGAAGTGACTTAGACAAAAA
*
5370 GAGAA-GAA---ACTTGGACAAAAA
1 GA-AAGGAAGTGACTTAGACAAAAA
5391 GAAAGGAAGTGACTTAGACAAA
1 GAAAGGAAGTGACTTAGACAAA
5413 TCTTTTTTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
20 2 0.06
21 16 0.47
24 14 0.41
25 2 0.06
ACGTcount: A:0.55, C:0.07, G:0.25, T:0.12
Consensus pattern (24 bp):
GAAAGGAAGTGACTTAGACAAAAA
Left flanking sequence: Indices 4846 -- 5345
GCTAATATACACCATTCGAGAAAAGAGAATAAGCCATGCTAATGTCATGGAAGAAAAAATATGGT
TTAGGCACGGATGCCTCACTCCGGCTGCTACTCTAAAAGGAGACTCGGTATCGGATGTATCATTT
CGTAATGGGGCTTGCGCATAGATGGCCTCTATGCCAACATTCATTTCGTTCTAAAGAGCGGGTCG
GTGTAATAATAGAATATATAAATAAGGTTGATCCAAAGAAGAAGTTGTCGTCTATTAGCAAACAA
TCGGATGCATTGCCATTCGAAGAAAAGACAGTTTCACTCCTTTTCCGAGTTGATCGGGTCTAGTC
AGCCATGAGAATGCGGAGGTGGGCTTTTTTCTTGTCTTTCTTTTCTATTTCCTGGATCCGGCGGG
GGTAGAGTGGGGTTTCTACCTGGCTTTTCAACTTGGCACGTTTAAAGAAGTTGCCTAAACTAAGT
GTACAAAGGGGGCATAAAGTTCTTCTTTTCAGGGTTGGCTTTTAC
Right flanking sequence: Indices 5413 -- 5912
TCTTTTTTGTCGATAACCTCAGACCAATCCATCGAATATTGATTAATACGTAATCGATAGAACAC
TACTTGAAAAAGAAAACGGTTCTTCTGCTCAGAAATGAAATGTTCCTGGAAATTCTTGCTCCCAT
TAGACCATTTGTATCTATATGCATTAGGATCCCAATTCATGGATCTCTCGGTTCGAGAAAGAAAA
AGAAGAGGATCGAACCATTTCTTCTGACTCTGTTTCAAATTCGATAAATGTTGGTTGATCGTATA
TTTCATTATAGTTCTATGATTCAGAGTATCATTTCCATTTCCTATTGGATCCCTTTGAATTCCAT
ATTCGAAGTTGCGATCGGATCTATTCATTAAAAAGAATTGAGTCAATACATTTCTTATGTACCCA
TAGGTACTATATTGGATTTGAATCAGATTTAGGATCAATCCATATTGATTGACTGCCTCCATTAT
GTTGTTTCTAGCAAATACCACTCTTTTTTGTTTTGGATCTTCCAA
Found at i:13833 original size:16 final size:16
Alignment explanation
Indices: 13812--13850 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
13802 GGAATTTCAT
* *
13812 GGGCTTATGAACGGAA
1 GGGCTTATCAACGAAA
13828 GGGCTTATCAACGAAA
1 GGGCTTATCAACGAAA
13844 GAGGCTT
1 G-GGCTT
13851 GCAAAGGAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.31, C:0.15, G:0.33, T:0.21
Consensus pattern (16 bp):
GGGCTTATCAACGAAA
Left flanking sequence: Indices 13312 -- 13811
GAATGGTCTACAAAAACGACTCAATCGGATCGGGGGAATACCATTCTGAGTGAGGTAATTAGCAA
CTCCAGATGATCCAGCTTATTTGAAGGTAGCCCCCTTCTCTTTCAGTAGATGCATGCAGCAATAC
TACGGGAGTTATACTTCTTCGTCTTTCAGAAGCTAGTGAGACAATGGGTCCAGCTTGGACTCCCG
AAGTGCTAGCCTACACACTACTTCCTATAGAAAACCATAGTTTTCGCTTCCTCTCATTTCACTCT
TCGCTTCCGCTGCCTGGAGGTTGTAACAATCCTCAGTTTCCAGATATGCCGCACTCTACCCAGAT
AACCCACTAGCTTCCTTGCTCGCTGGATTGCTCTTTCGTGGTCTCATTTTAGCTCTTGTCCCCCT
AGTGAGTTACTCGGGGAAAGAGAACTCAATAGCTCCTTCAAAGGTACAAGGGGAAATTCTCTCAT
TTGACCTTCATCCACCATTCTTAGTGGAAGGCCTTGGAATTTCAT
Right flanking sequence: Indices 13851 -- 14350
GCAAAGGAAAGAATTCTTGCTATTACTGGTATTACAGGGAGCCACCCTATCAAAGCTTTATCCAC
GCTATATGAGGGCCATATACCCATATAAAAGCCTTTTCAGACAAGCCAGCCCAGTCAGCTCATCT
TGCTAAGGATGTTGACACTTTAGCGAGGGACTAACAAGTTCAGTAAGTAAACACAATAAATAGGG
GGTAGGGGCTTTGTTTGGGGGAGCAATTCCCCTTCCCTTCCTTTGGAGAGTTACGAGTTGCTGCT
GAAGGACTTTCTTTTGCTGATGATGTGGTTTCTGTTGCTTTTGCAGAACTGAGATCCCTTCCAAT
AGCTACTGTTGCTACTGCTGTTCTTTTAGTTCCTTTAGCTGGAGAGGAACTTCTACCACTTTTAA
CGAAATCCCTCAGTGCGGGAACCGCTTTAGCTGCCACTCTAACAGCGTAACCAAGAGCCTATTAC
TTTGAGAAAGATGAATTTATACTTACCAGTGGTAAGCAAATTTAC
Found at i:38336 original size:27 final size:27
Alignment explanation
Indices: 38298--38351 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
38288 CGAAATCGCT
38298 ACAAGCAACCTATTTCATACCCTTTTC
1 ACAAGCAACCTATTTCATACCCTTTTC
38325 ACAAGCAACCTATTTCATACCCTTTTC
1 ACAAGCAACCTATTTCATACCCTTTTC
38352 GTCGTACTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.33, G:0.04, T:0.33
Consensus pattern (27 bp):
ACAAGCAACCTATTTCATACCCTTTTC
Left flanking sequence: Indices 37798 -- 38297
CAAAGGACTCTATTTTCAACCCATTACAAGCAGCTCGATGGACAAACTCACTATTCGCTTGCCTG
GCACAACAAAGAACAACAGCTACGAAGGCTGCTACAAGGGAGAACGAATAGAACTAGATGCGCTT
GACCTAGCTCTTGCTTGATTGCATAAGATGAGATGTCTTGATTGAGACAGGATTGCTCACAGGCT
TGCTTTCATGAGTGGGAAATCAAACTCTTTGTTGTACAGCCTTTTTCCTTCACTAATGGATGTTC
ATCTTACCCGACCAAGTTTACTATACGCAACTGGTTTTGTCGCTGCTATTGATTTCATCTCATGG
ATGCTGGAAAGAATTGCATTTAAAGGAAAGTTCCCCTCTTCTTATGCAGTTAGCTCGACTCCAGG
TATAGCTCTTAATGGGCATGTAGCCGTAGGCGGGAACTCTTCTTTTTATCTTATTCTTTGGTCAT
GCAAGTCGGCTGGTAATCCCAACCGAATAAGCAATCGAAATCGCT
Right flanking sequence: Indices 38352 -- 38851
GTCGTACTTCCTCTTCTCCTTCTCTTCTTTCTCTCCCTGCCGAGCTTGTTGGAGTTTGCCAAGAT
CTAGTGTAATTCCTTTTCCCCGGGAGCCAGTCTCACTATCAATAGGAAGATCTTTATTGCTTAGG
AGATTTCTTGTTTTATCCCCTTAAAAGTATTTGGCATAAAGAGCCCTCAATAACTTGCTTGTCCT
GTACGCAATAACTGAGGATAGAGGGAGTTTCAACTCGGCCTTCTACTAAGAGTGTTGCACAAATT
CCCTTTCTTATCCCTTCTAGTTTAAGCCTTTCCTTCCTATGTAACCAAGTCCTCCTATGAACCTA
TCCCCGCCTAAAGGATAGGATAGATTACAACTATAAAGTAAAGGCTGTCTTCGAGCAAGCTCTTA
GCTTTCATCGTGAGTGAGAGAGGAATTGAGGCTGATTCAACTCAAGCAGCTTGCACATGATTGTC
TTGTGTAGTGTGTGATATCTTTCCTTTGTTAAGTGGAAGTGGGAA
Found at i:59236 original size:20 final size:21
Alignment explanation
Indices: 59206--59249 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
59196 AAGACAGGCA
59206 AAGGTAAGGGGAAAAACAGAT
1 AAGGTAAGGGGAAAAACAGAT
*
59227 AAGG-AAGGGGAAAAACAGTT
1 AAGGTAAGGGGAAAAACAGAT
59247 AAG
1 AAG
59250 AATGACTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.52, C:0.05, G:0.34, T:0.09
Consensus pattern (21 bp):
AAGGTAAGGGGAAAAACAGAT
Left flanking sequence: Indices 58706 -- 59205
TCTAGCAAAGAAGTCAGCTATGGGCAAGACTTGGGGCGGGCCACCAAAGCGGGTTTAGCCGGTTA
GAGCTCAAGAGAATCGCTTCACGCCTTGCTTGCAAGAGCTAGACAGCAAAACCATTCCTAGCCAC
CATTGCTTTCGAAATAGCTTACATTTCAGGGAACATCTACTTGATAATTTTCTATAGTGAAAGCC
TTTTTCCAGGCAAAGACCCCACTCATAGGGTGAAGGCAGCCATCACTGGAGAATAGCTCCTAGCC
TTATTCTAAGAAGGCGCATGCCATCAAACGAAAGGAAGGGCCCAAACCGTTAGGGAGCATATGTT
TCCAATAGCAAGAGTCAGTCCAAGCAGCGGAACACGTTACCCATTTCAACTAGGGAAGTTTCCAA
ACTCAAATTCGAAATGAGATCTTCCATCTTGATTAGCATGGTAGGTAGGCATGAAAGATGAGGCA
AAGAATGTTCCGCATCTCCCCGGCCAGAAGCTTTCAAGACAGGCA
Right flanking sequence: Indices 59250 -- 59749
AATGACTTTGCTAGGAGTTAGGACCTTTCATCCAATACATGTCAGGGGGGATTTTGATCCCAATA
GAATGCTATTTTACCTAGGTCAAAACCACGTTAAGGATACCTCTTTATACCCTTTCTATTATAGG
CTTAAAGCATGAGGGTGGACCCTTATTTTAGCTTGCCTATAGCAGGTATTAGAGAAGGATGACCC
GCATGTGGGTGAAAAGCCTCTCTAATACTAATAGCGGAGAGTGATAGTACGATGGATAGGTCTCA
TCAGAGGTTCTGGCTGGTATTGCTGCTATAAGTCCGTTCGGGGAGTCCGTGGCATAAACAAAGAA
GGATTTGAGTCTGAGAAAGACTGTTTCCCCATTTTCATACGAATAGTGAGAAATCTCAGAGTTTA
TCCAGTTGGGGCATAGAAAGAAGACCTGAACTCGGTGTTTCCTCAATCTGAATAGATCAATCTGG
ATTATAGGCCAGCAAGCCCGGAACCAGCAAGTGGGAGCCTGCTGG
Found at i:70523 original size:24 final size:24
Alignment explanation
Indices: 70491--70539 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
70481 TTTCTTTCCA
70491 AGGGACGGGGTTGGGGTGTATAAT
1 AGGGACGGGGTTGGGGTGTATAAT
70515 AGGGACGGGGTTGGGGTGTATAAT
1 AGGGACGGGGTTGGGGTGTATAAT
70539 A
1 A
70540 ACCTTTTTTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.22, C:0.04, G:0.49, T:0.24
Consensus pattern (24 bp):
AGGGACGGGGTTGGGGTGTATAAT
Left flanking sequence: Indices 69991 -- 70490
GGGCCTTCAAGCATCCGAAATACGCCGGGCTTGTAAATGACATAGCCCTCCTAAATGACGACTCC
TTCAGAAAAACGAAGTTATTCAAGTTCTTTTTCTCAAAGAAGTCAAAGAAGTCCCCCTCCGACAG
CCCGACGAGTCATCCACTTAAAAGGACCCTCCCTGCGGTGCGCCCTTCCTTGAATTATTCGGTCA
TGCAATACTTATTGAAGACAAAGAACCAAATGCATTTCGACCCCGTCGTAGTTCTCAATCATTTC
GTGGAACCGGGCGTGGTTGAACCATCTACCATGGGGGGAGCTAACGCACAGGGAAGAAGCTTAGA
TAAGAGAATACGTTTCGCTTTTTTTGTCGAAAGCTCGACCAGCGAGAAAAAGTTTTTGGCCGAAG
ACAAAAAGTTGACCCACTTCATTCGCTGGTCGAATCATCCTCGCTTCGCGGGAACAACAAAAACC
ACCATCTCGCTCTTTCCTTTCTTCGGTGCTACCTTTTTCTTTCCA
Right flanking sequence: Indices 70540 -- 71039
ACCTTTTTTTTGAGTATGCCCGGGAACAACTCCTACGAAAATTCAGGAAAAAATGTTGGAACCTC
ATGGCTAAGGATAAGGTAATGGAATTGATAGAGAAATTCATAGACCTAGGTGGGATAGGAGAATT
GATAAAGGGAATAGAGATGATGATAGAGATCATACTGAGAAACAGAAGAATTCCGTACGGGTACA
ACTTTTATTTGAACGAAGTGAAAAAAATGCGATCTTTGTTGTCTAATAGAACAAAGACTAATACC
TTAATTGAGTCGGTCAAGATCAAATCTGTTTATCAAAGTGCTTCTCCGATTGCTCAAGATATCTC
TTTTCAACCGAGGAACAAAACAAGATCATTTCGCTCCATTTTTAGTCAAATAGTGAAGGATATTC
GATTAGTAATGAAAAAAGGGGTGGAGGGGATCCGTATATGTTGTTCAGGTCGATCAGAAGGTGCA
GAAATAGCTAGAACTGAATGCGGAAAGTATGGAAAAACATCTAGT
Found at i:82627 original size:37 final size:37
Alignment explanation
Indices: 82586--82659 Score: 148
Period size: 37 Copynumber: 2.0 Consensus size: 37
82576 CTGGAAGAAA
82586 AGCGAACGAGCGTAATATATGAAGCGAGTATAGAGCT
1 AGCGAACGAGCGTAATATATGAAGCGAGTATAGAGCT
82623 AGCGAACGAGCGTAATATATGAAGCGAGTATAGAGCT
1 AGCGAACGAGCGTAATATATGAAGCGAGTATAGAGCT
82660 CCGGCTTTCG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.38, C:0.14, G:0.30, T:0.19
Consensus pattern (37 bp):
AGCGAACGAGCGTAATATATGAAGCGAGTATAGAGCT
Left flanking sequence: Indices 82086 -- 82585
GAGATGCCCATAAACATATCGATAAATTCGGGAATTGAATTTGTGTGTCAAGTAAAGTTATATTT
TCATGTAACCTAGCCCGAGAAAACACACCGAAGGGATCGTGGATAAAGTACGGCTGGGATCCAAA
GGTGCGTAACAACTTGTAATCAGGTGTCTTGTGAAATAATCACTCCCATGGTTAAACCATTTGTG
TCACTATAGATGGCACTCGATTGATAAAAAAGACAAAAAGTTTAGCCATTCCTATCTTAAATGAG
TCCGGTAGGATTGTTCCTCTTCAAACAAAGGAACAAACTATTCTTTATAATCCAACTTTATTTCC
TACATGACCATTCTACTTGTCTCTGGTCTCGACCCCGCCCTCTTACTACCTTGACCGGAAGTTCA
ACACGCCTATTCGCTTTTTTTATTTACTGAAGCACGACTTGCTTGATATAGTTACTAATGCTAAT
TGGTTAAGCGACGCTCCGGAAAGAAGATGAAAGCGCTGGAAGAAA
Right flanking sequence: Indices 82660 -- 83159
CCGGCTTTCGAGCCTCCGCTTGCTCCCTTTCATTCCTCATCCCTGAACCCGAAAAGGCATCTCCT
TTCCTTTGATTGGTGTAAGGTGACATAAACCGCGCATTCTAGCAGCCCTAAAAAAAGAATCTCTA
GCGAAGCTGTCAACTCAACCTAAAGAAACCGATCCGCTAGTCTAATCTATTCTCTGCTTTCGAGA
AGTGAATTCCGACCAGTCAACTTAGATGTCACGGGACTGGGCAAAAGCATGCTAAGGGCGCTGCT
TACTCCTTCAATAGCAGATTCAATAGCAAAGAAAAGAAGCAAGGCCCGCTACCACGAAGACTAAT
CAGACTCTCGGATGGCACTCGGTTTCCTAACTCATTTACTTTACTTGAAGCCTTTCATTTTCGGC
AGCTAAGGAGGCAGTCTTGGTCAACCATCCTGAGTGTGACACTTCATTCCCGGCTTTTCTTTCGA
CCACATAAGATTGGGGTTACAGTTTCATAGGCGCCGATAACTCTG
Found at i:93895 original size:18 final size:17
Alignment explanation
Indices: 93865--93898 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
93855 CGTTCCTCTC
*
93865 GCTCCAACTACAATGGA
1 GCTCCAACAACAATGGA
93882 GCTCGCAACAACAATGG
1 GCTC-CAACAACAATGG
93899 GCGAAATCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 4 0.27
18 11 0.73
ACGTcount: A:0.35, C:0.29, G:0.21, T:0.15
Consensus pattern (17 bp):
GCTCCAACAACAATGGA
Left flanking sequence: Indices 93365 -- 93864
CAACCCCGCTTATAGTGCTTGGGTGAGAACGGATCAAAGTGTTCGCTCTTGGTTGAATGCGACAC
TCTCAGTGGACATGTTGACGGAAGTCTACAATAGAATATGAAAAAAAACATAGATGGATGGCTTT
AGAGCAAAGATTTGTTGATCAGTCCACGGCTAAAGAAATGAAATTGAAGTTCGATATTCAGAATA
ACAGGAAAGGTAACAAGCCTATGGATGCCTATTTACAGGAACTGAAGTCTATGGTTGATGCCTTG
GCTGCTATCAACTCTCTTCTATGTCCCCAAAGGATGTAGTTTTCACTACAAAGCCCTTTGAATAT
GAAGCTTTTGTTACAACCATCTCCGACTCTAAGACTGTTCCATCGTTTGAGGAGCTGCGGACTAA
GGTCCTTAACCAAGAATCGCGTCTTCATCGCATACAAGCTGCACAACACAGTGAGCAGCAATCAG
CCTTTGTGTCTCAGACTCCAGCTGCTTCTGATAATCGTTCCTCTC
Right flanking sequence: Indices 93899 -- 94398
GCGAAATCAACAACTGATTCCCCGCATTGCTCTTCCAAGCCCTTATTCCCAAGTCACCTTAACTA
GTTCCCCGCACTTGTCTGTAACGGACCCTCTGCCTTTAGCTACAAATAAAGACTCTCAAGAATTA
TGGGACTGTCTTAGAGGCCTGAATCCTTTGGATAGTGGTCAGGAAGATACCTTTAACCCCTGAAC
ACACTGGCAGATCACCTGGCAGTGCTTGGCCTTTGATGGCTTTGAGAGTCTTTCAAACAATGTAG
TATTCCGCCAGGAGCATTTGCCACCACCTTGCTATCCCCCCAGAGAGAGAGGCTTTCTCGAATAT
GTATTTCAGTGCGCCCATGCGAGCGATGAGCCAAGTTGTGTGATAAAGCATGTACTGCCAGAGCA
GCCCAAGCGAATGCGCAGCACGTCCGTTCTAGTGCTGAATATCTGTTCTCGTAATCCGTGAACTT
CTTTCTCAGTTAGTTCGTGGGATCGGCATCTCCTGAATGGCTTTC
Found at i:94837 original size:18 final size:18
Alignment explanation
Indices: 94819--94884 Score: 69
Period size: 18 Copynumber: 3.5 Consensus size: 18
94809 CTCGTCAGTC
*
94819 TTTGTTTTCTTCTCTGTC
1 TTTGTTTTCTTCTCTGTA
* *
94837 TTAGTTTTCTTGTCTGTA
1 TTTGTTTTCTTCTCTGTA
*
94855 TTTGCTTTCTCCTCATCTGTA
1 TTTG-TTT-TCTTC-TCTGTA
94876 TTTGTTTTC
1 TTTGTTTTC
94885 ATGTCAGTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
18 18 0.46
19 5 0.13
20 6 0.15
21 10 0.26
ACGTcount: A:0.06, C:0.20, G:0.12, T:0.62
Consensus pattern (18 bp):
TTTGTTTTCTTCTCTGTA
Left flanking sequence: Indices 94319 -- 94818
AGTGCTGAATATCTGTTCTCGTAATCCGTGAACTTCTTTCTCAGTTAGTTCGTGGGATCGGCATC
TCCTGAATGGCTTTCACCTTGTCGGGATACATCTCACTCATCTTCTGCACAGGCTACACCATGAC
CGTTCCCAACGACCGGAACAGTGACACATGCACAGTTTATTGGGCGCATTACCCAGGAAGAGTGG
CTGGCTGCCTCATCTCGAAAGCCATTAATGACTCTTATTCCTACCCAACGGATCAACCGCAGAGC
TCCGGGCCAACCCTTACCAGTGATTCTCGCCTCCCCTACCATTCTGTCCTTCCAGGAGGAGATGG
ATGAATGGAAAGCAAGTAAACAGGAAAGCTAGCCGGGAAGGCATTGACTCGACGCTGTCAAGCAG
TAAATCCAATAATCAATGGCTAAAAGGCATACAAAAAGTACTGGCTGATGGCTCGCTATTCAAAT
CTTCTCTTTCTATTTTTTTTTCATGGAGGTTTCTTCTCGTCAGTC
Right flanking sequence: Indices 94885 -- 95384
ATGTCAGTATTAGCATTCTCGACTAATGTTTGGTTAGTAACCCCTGTTTGTACTTCTATCTGTGA
TTTCAACTTGGCAATCTCTCTATCCCTCTCTTCTAATTTCTCATTGAGTCTCTCATTCTCAAGAT
GGTGTACTCTATCACTTAGTGATGAAATCACTTTTCTACTAATGTAGTCTAGGTTAGACAAGTCA
TGTATATCAATAGGCTCACTATCCACCCATTTCTTATTACTGTCATATACTGGTATCCTCTTAGA
CCCCTCTTTAAGACCTAAACTGTATAAGATTTCTTTTTTTTCGATCTCCAAACTTCCCCAATCAA
TCCTGAAGTGAGCATCCACCTTGACCAACTCCCTTCTCGATGGGTCAGCGTACTGTTTCACAAAC
CATTCGGGAGTGACCTTATCTTTAGCTGGTCCCTTGTACTTTTTGACATTGCTTCCTTCCAAGGT
GTAGTAACTATATGCTTTCGGTGCAAGAAAGAAACCTTCTACGAT
Found at i:103702 original size:27 final size:27
Alignment explanation
Indices: 103664--103717 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
103654 CGAAATCGCT
103664 ACAAGCAACCTATTTCATACCCTTTTC
1 ACAAGCAACCTATTTCATACCCTTTTC
103691 ACAAGCAACCTATTTCATACCCTTTTC
1 ACAAGCAACCTATTTCATACCCTTTTC
103718 GTCGTACTTC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.33, G:0.04, T:0.33
Consensus pattern (27 bp):
ACAAGCAACCTATTTCATACCCTTTTC
Left flanking sequence: Indices 103164 -- 103663
CAAAGGACTCTATTTTCAACCCATTACAAGCAGCTCGATGGACAAACTCACTATTCGCTTGCCTG
GCACAACAAAGAACAACAGCTACGAAGGCTGCTACAAGGGAGAACGAATAGAACTAGATGCGCTT
GACCTAGCTCTTGCTTGATTGCATAAGATGAGATGTCTTGATTGAGACAGGATTGCTCACAGGCT
TGCTTTCATGAGTGGGAAATCAAACTCTTTGTTGTACAGCCTTTTTCCTTCACTAATGGATGTTC
ATCTTACCCGACCAAGTTTACTATACGCAACTGGTTTTGTCGCTGCTATTGATTTCATCTCATGG
ATGCTGGAAAGAATTGCATTTAAAGGAAAGTTCCCCTCTTCTTATGCAGTTAGCTCGACTCCAGG
TATAGCTCTTAATGGGCATGTAGCCGTAGGCGGGAACTCTTCTTTTTATCTTATTCTTTGGTCAT
GCAAGTCGGCTGGTAATCCCAACCGAATAAGCAATCGAAATCGCT
Right flanking sequence: Indices 103718 -- 104217
GTCGTACTTCCTCTTCTCCTTCTCTTCTTTCTCTCCCTGCCGAGCTTGTTGGAGTTTGCCAAGAT
CTAGTGTAATTCCTTTTCCCCGGGAGCCAGTCTCACTATCAATAGGAAGATCTTTATTGCTTAGG
AGATTTCTTGTTTTATCCCCTTAAAAGTATTTGGCATAAAGAGCCCTCAATAACTTGCTTGTCCT
GTACGCAATAACTGAGGATAGAGGGAGTTTCAACTCGGCCTTCTACTAAGAGTGTTGCACAAATT
CCCTTTCTTATCCCTTCTAGTTTAAGCCTTTCCTTCCTATGTAACCAAGTCCTCCTATGAACCTA
TCCCCGCCTAAAGGATAGGATAGATTACAACTATAAAGTAAAGGCTGTCTTCGAGCAAGCTCTTA
GCTTTCATCGTGAGTGAGAGAGGAATTGAGGCTGATTCAACTCAAGCAGCTTGCACATGATTGTC
TTGTGTAGTGTGTGATATCTTTCCTTTGTTAAGTGGAAGTGGGAA
Found at i:133865 original size:39 final size:39
Alignment explanation
Indices: 133811--133889 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
133801 CGATTTTCTA
*
133811 TTCACTCATGATCTGGCCTAGTCGACCCGATCATGATAT
1 TTCACTCATGATCTGGCCTAGTCGACCCAATCATGATAT
*
133850 TTCACTCATGATCTGGCCTGGTCGACCCAATCATGATAT
1 TTCACTCATGATCTGGCCTAGTCGACCCAATCATGATAT
133889 T
1 T
133890 GAAGGATGGG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.23, C:0.28, G:0.18, T:0.32
Consensus pattern (39 bp):
TTCACTCATGATCTGGCCTAGTCGACCCAATCATGATAT
Left flanking sequence: Indices 133311 -- 133810
GCCCACACCTGTGTAGAGTGGATCGTTCAACACCTGCGGCACAAACCCATTTTTGACCTATTGGT
CCTAGTATCATAGGCGACCGAACGGCCGCCCCCTAATTACTAGACCGACCTGCTATAATAATTCC
ATAAACACCTAGCGAAGATATGGCAAACAAATAAAGTAGCCCTATGTTCGGATCTGACAATACCA
TACCATAATCAAAAGGTACAACGGCCCGAGCGACCAGACTTAACATAAATGTAGCCACTGGAGCC
ATTCTAAAAAGGGAGAAATTTGCACTACTTGGTGAAATAGGTTCTTTTATAATCAATTTAAAACC
ATCTGCTAGAGGTTGTAACAATCCAAACGATCCCACTACATCAGGACCCTTTCGACGTTGCACAA
AAGCCATTACTTTACGTTCAGCTAGCACTAAAAAGGCTACTCCTAGTAGAAGTGGTAGAATTATT
CCAAGTATTTCAGCTGGAACTGCTATGTACATTTTCGATTTTCTA
Right flanking sequence: Indices 133890 -- 134389
GAAGGATGGGACCTTTTCTCGAAAAAGAAAGGAGATTCTATTTCTTCTTCCAAGCCCTTCTTAGA
AGATGCAGTCAGTAAGCTCTCACTTATCTTCTTCATTTACGAAAATAGATAGATAAGAAAAGATG
TCAGCCTCTCTTTTCTCGCGGAACACTCACTTCATGGGGCTATTTGAATTGGAAGACAACGACAA
AAGTGAAAGAAGGAGGTCTATTTCGTTGATCGATGTCAATGGACCAAGAAATCTGTCCTTTGCTG
AAAGCTCATAGGGTAAGAAGAATTGAAAGGTAGGTTTTGTCAGTGATTAAATGGAAAGGTCAGCT
GGAGCGAAAACCAATCAAACTCAGAAAGATAGGTAGATCGAGCGCGCTGAGGGAAATTCGAGAGA
TCCGGAGACATGGCCACTACTGGCCTACGGTCCTTGCAGATTACATAGCACATGCTAAGAGCTGC
GATGCCTGCCAGAGGTATGCAGGAATCCAGCACAAGCCGGCTTCC
Found at i:144625 original size:27 final size:27
Alignment explanation
Indices: 144595--144646 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
144585 TATGGGTAGG
*
144595 AGTCAAGTGGAACATAGAATTGTTTGT
1 AGTCAAATGGAACATAGAATTGTTTGT
*
144622 AGTCAAATTGAACATAGAATTGTTT
1 AGTCAAATGGAACATAGAATTGTTT
144647 ATTGACAAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.37, C:0.08, G:0.21, T:0.35
Consensus pattern (27 bp):
AGTCAAATGGAACATAGAATTGTTTGT
Left flanking sequence: Indices 144095 -- 144594
GAACCGAAGGCTGTTTGCGTACTTGCTTGTTAAAGCCTGAAAAGAAGCCAATAAGGCGCAGTTAC
AGCTACATTGGATAGGGAAAGGGTCGAAGTTGCGAAATCAGGCATAGGGTGTACGAATAGCACTG
ATCGTAGACCATCCAGATGCTTATGGGGCAGAACAGACCGATTGATTAGTTCCCGTGATCGTAGA
TCCACTTTAGCTAATGCAACTCGGGAAGAAGCTGCTAAGACCCCGTCGCTTACAAATGCTCCAGC
GTGAAATAAAGACTTTTTTAGGTACAGGGATAAATTCGTACAATAGTGCGAGGACGGAAAAGAAA
ACGACCTTCTTTGACGCATGTTCTCCCAATAGTGCGAGTACTGACTTGTTCGTAGAAAAGAAGAG
TCCTGACTAGTATACCGTCTGCTATTCTTACTAAATCTCAAGATTGAATTGGTAGTTGTACAATT
GAACACGGTATGGGAACTATACAAATTGAACACGGTATGGGTAGG
Right flanking sequence: Indices 144647 -- 145146
ATTGACAAGTTTGTGGGTATGTGGTTTTTGCATTTCGTTCAATAGGGGGAACACGAGACCTATAA
AGAAAGGGGAATACAGATAAATTTTAGATTTTGACGCATTAGTAGGATTCATTCTTTTCCTCTCC
ACAGATACCGAGATCTATCCTTAGATAGACGCACTATAAAGTTGAACAGGAAAGTTGAGACTGGC
TTGTTCATGAGGCTAGTTCAGGAATTAAGGTTTTCTAGTTTCAATCTATAAATACCGTTTAGCCC
TCACTCGCCGGTGGGCTCACAACACTTGCTTAGAGGTCTAGCAGCACTGACCGGAAGTCCGGTAG
TCCGGTCATTCTCTTGAGATCTGAGTTCCAAAGGTAGGTGAAGTAGGATTTCTCAAGACCAATGG
GTGAAATAGCACCCTCCGATGAAAGAGTCCATCTCGCAAGCACTACGAAGGAAGGCAGGGAAGAT
CGAATCACTATCTCCGTGCAAGCAGACCTTCAAAGGACTTCGGCT
Found at i:173862 original size:21 final size:21
Alignment explanation
Indices: 173836--173879 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
173826 GCTGAAGGCT
173836 CTAGTGGGCGTACTGTTTTAC
1 CTAGTGGGCGTACTGTTTTAC
173857 CTAGTGGGCGTACTGTTTTAC
1 CTAGTGGGCGTACTGTTTTAC
173878 CT
1 CT
173880 GTCCAAGCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.14, C:0.20, G:0.27, T:0.39
Consensus pattern (21 bp):
CTAGTGGGCGTACTGTTTTAC
Left flanking sequence: Indices 173336 -- 173835
CCCCAGCCCCAGGTGTTACTATCATTTCTAGGCATCGTCTGTACTTAACAGTTCCCTTTAGTGTA
GTTTATCGGAGATATCTGGATTATTTTTTTAATAAAAAAAAGAAGAGTCTGGGACGAAAGAGAAG
AAAAAAGGTAGTTTACTTGCTTAGTGCTTGTGCGCTAAGGGAAGAAAGATCGAAAAGTCGAAACT
TTCGAAAGCGCACTCACTCTTCTCAAAATCTCTTAAGAGAAGAAAGATCTACGCTACGAAAAGGA
GCGAGCGGAGAGAGCATAAAGAGCTTACTTATAAGGTACGAGCTTAGAGCCTTGCGTCACTCTGG
TATGCTAATCACTTCGTTGTACGACTCTGGAACGGTAGTCGCTTAGTGCGACAGCACTATGGGAT
GCAAAGAAGCTTCGTCACCCTTCTTTAGTTGCTTCTACTTTTTTCATCGAGATTGGGTTGGTGTT
CAGTGTACTTTATTAATAGTATGTATTGTATGAAGGCTGAAGGCT
Right flanking sequence: Indices 173880 -- 174379
GTCCAAGCATTGCAAGCAAATGGTTTTTGAAAAGCGCTAGAAATCGTGGTCAACATTTTTCCAGT
GCTTCAGCGGGGGTTGACGGTATACTGAAACTCATGTCGTACAGCCAAGTAGAAAAGCAGCGAAA
CATAAATTATCGTAGCTTTGAAAAGAGAAAAGTGTTTTCTTTATTCGTGGAAGGTTCATGGAAAA
GGGGTGCTTCGGATCGGGAGTAATCACTAGTGATAGGGCAAAAATCGGGGGAGAGTTTATACGGG
AAGAGATCAACATGTTTTCTCCTTTTTTCATACTCAGGGTGCTCAGTGCTATAATAACCATTTCT
TTTTCTTTTCTAGGGGCGGAGGGCCTCACTCCAGTGTCCACCCGTTCTTTTTTGTGTCTTTTGTT
TGTTTTAATCACTTTCATCCTTATTTATCGAATAAGAGTTTCGATGGGTCAAAATTGTTATATTC
TGTTCTTCTTTATTCTCTTTCTCATTGCGGGGGTGGGTGCTTGGT
Found at i:224396 original size:18 final size:18
Alignment explanation
Indices: 224356--224398 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
224346 ACCGCCCTGC
224356 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
224375 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
224392 CATAGTC
1 CATAGTC
224399 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 223856 -- 224355
CGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAG
CGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAAC
CTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAA
AGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAA
GACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCT
GCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTCAGCGTCAC
GAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCCTTTGAATCTTCAGTAGGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 224399 -- 224898
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:226036 original size:21 final size:21
Alignment explanation
Indices: 226010--226053 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
226000 ATATCTAGTT
226010 TGAATTCTAAGACCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
*
226031 TGAATTCTAAGGCCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
226052 TG
1 TG
226054 CTCTCAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.39
Consensus pattern (21 bp):
TGAATTCTAAGACCCTCTTTA
Left flanking sequence: Indices 225510 -- 226009
CCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTG
CTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAGAACTTCGATA
GGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAAGAACTTTCACTTT
CCATAACCAAAATGAAAGAAAGTCAACCTATTCCTGCAATTGCGGTCAGTCTCGCTACCTCTTTA
GTTGCCGCCCCCTACTTGCTCATTCGCAATGACTACCACAAGAAAGTAGCCCCTATCTCTAAAGG
GGCTTATGCACTCCACGACTTTCTTATGTTATGGCGAAGACTGAATTTAGCTTCCAACCCTAGTC
AGCAAGCTTCAAAAGTCCTTTCTCCTTTCTTTTCCGAAACTCAAATAGAAAACTCTCCCCATGGG
ACCGGGGTTTGAGGTTGTCATACCACTTTCATCCGATATCTAGTT
Right flanking sequence: Indices 226054 -- 226553
CTCTCAAAGACCGGCTTTTACAGAACTGAGATTCCATAGGCCGAAACGAAGCCCTTTAAAGGTAG
AATTAGGAGTCGAAGCCATGCATTTAGCCCGATTGCTATTCGCCCTTTTTAGCACTAGACTGACA
TTCTCATTTCGCTTGTTCAGTTCAACGAAAGCCGGTACTAATCAAGCACAGTTTAGCCCTATGAT
TGAATTGCGATAGTTGGATTCCCTCTTCCTATAGCTATGACTGGCAACCCCTATAAGTCAGTTTT
TACTCCCTCTTTTAAGGTCGAGCCTATAGAAAAGTAAATATGGTCTAGCTAGTTATCACTTCTCC
CCCTATAGTTATAGCAGTACTGGGGAATTCCTCTATCTTCTTTGAATGAGGAGAGAGAGTACTCA
TTCCTCTCCCTCTGGTCGAGTGGCTTCGCTCCTATAAGCTAGTTCTCACTTCCGAGCTCTAACTC
CTTACTTTCTTTCCCACCGTAGAACTCCAATCGAAAGGGGAATCT
Found at i:227659 original size:25 final size:25
Alignment explanation
Indices: 227631--227680 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
227621 AAATTGGGGT
227631 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
227656 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
227681 GGAGTTGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (25 bp):
AGCTCAGGAACTATAGAATCTCTCA
Left flanking sequence: Indices 227131 -- 227630
GTGCCATTTCTTCTCTTGGAGGCAGGGCAATAGATTCATCTTGTCCTTGGCTTGTGAAGGGAATG
AGGTAGGGTAGCCAAAGCCCCCAACAAAGGGATAGGGCAATCCTTCCCAAGTAATGCATAAGCAA
GATCAGGACTAGAGGGGTGTGAAGAGTAGGGGGATCTCTTGTGCAAAGCAAAGACAGGTACGTGC
TAGCAAAGAAGGGAAGTGGCAAGGGATTGAAAAGAAGAAGAAAGAAGAGAAAGTTAGTACACAGA
GTCTTCCCCTGCCTAATTGATCTAATGATAAAGAAGTAGGCTAAGTAAAATAGAAAGTGTGTGTA
AACAATAAGTAATGACTTGCTTTGTGAGAGCTCAGTTTCTAAGACGAAGGCTAAGAATTCTCTAC
TAGAGGGATTGAAAAGATCGAGGGTAATTTCTGAGTCTTGATGGACCTTTCTTATTATAGGCCAA
AGGAATAGCTAAGGACTTCTTCCCTCATTCTCATCAAATTGGGGT
Right flanking sequence: Indices 227681 -- 228180
GGAGTTGAATAAACTCTTTTATGCTAGTGGAATTGGGAAGCATGATAAGTCCGTACTCCACATTC
TAGCTTCATCCTTGGTTTTCAAAGAAAGGAAACTTCAAAGACTGACAGAAGAGAAAGGTAAGATA
ATCCTTTCTGGCCTTAACTGAAAGCGGGGGAGGCCCAGGTCTACATACAGGTCTTGGATCAATAT
CATCCTCCAATTGCTAGGGAAAGAAGATCGGGATTAGTCTCCTTGCCATTGCTACTGTCTTTGAA
AGTCTAGCTATCCTCTCCTTGTCATGCTTAGTTATTCTGCATTGCTCCTTCTTCTGATCTTGCTT
TCTTGCCTTATAGAACTGACCTTTGTCCCCTCCTTCCGGTTTTAACTCACTTAAAGTCCATTCCT
TGCTCTTGCCTAGTTCTAGGCTTAGACGAAAGAGCTCATTCATAGATTCCATCTTTCTAGCATTT
CATGTCTTTCTTCCTTCAACTCTAATTCATGCCATGAATTGTTAA
Found at i:256054 original size:20 final size:20
Alignment explanation
Indices: 256029--256067 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
256019 AGGCCTTCAC
256029 AAAATCGTACAAAAAAGAAG
1 AAAATCGTACAAAAAAGAAG
256049 AAAATCGTACAAAAAAGAA
1 AAAATCGTACAAAAAAGAA
256068 TATAGTAGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.67, C:0.10, G:0.13, T:0.10
Consensus pattern (20 bp):
AAAATCGTACAAAAAAGAAG
Left flanking sequence: Indices 255529 -- 256028
GATAATTCTAAAAAGTAGCTCGCCTTTAGTCAGCTAGTACAAGAAAGTGGAGGCTCGATGAACGG
CCTAAAAAGTCCTGGTATCTCGTTGTAATCCCAAGCTTGCAATCCCTAAACTCCTTGAGTAGCCC
TCTTTCTGAAGAGCAGTTGATCGTGCTACTCATTCATGTAGGCTGTCACTCAGTTCCCTCTCATA
GATGGATTTCTCAGAGTAGATCCTGCACTTCATCCTTATCCTTATTCTTGATAGCACAGGAAAGG
GACGATTCTCTGTGCCTACCTATCCCCAATCACACAGGAATGCTCGCTTGGCTGCTTACCAATCC
TTTCTCAGAAAATTCCTCGCGCATCACAAAAAACTTATAGAAAACCTGCGAAGGATACCCACTTC
CCACTTATCCTTCCCCGCCCCTGAAATGGGGCGGGCCTCGTTCTTTTTTTGTGTACCACCACCAA
AAAAAAGACTACAATCCAAAAATAAATATCGAGAGAGGCCTTCAC
Right flanking sequence: Indices 256068 -- 256567
TATAGTAGGGTATTTTAATCATGGATCGCTTCCATGATTTTTTTAAAATAGGAACTCCCCTCCCC
CCGGGTCGAAATATCTTTTAAAATTCGTTGCATTTTATTATTTCGATACCTGATACTCTTCATTT
CCTCGGTCTCAAATAAAAAACCGTCGACACCCGCGCGGATGTCCCGCGTTTCAATATTAAAGTTT
TTGTCTCCTAATATTTTTGTGACCCGTTGAACAATTCGTTCTTTTTTGACTAAAAAATTCCTATA
AGTTCTTTCTAACGAGGGGTCTTCGAGCAATTCCTTTATTTTTTGCTCTGAAGGTCCCGGCGGAC
CCTGGCTTTCGGTTTCCAAAATTGGAAACACGGAGGAATCCTCCCCTGGTGGGCCTGGCGGGAAA
CCCGAAACGCCCCCAGAAGTGGCCGGGTAGAATTGGGCCACTGCTTGGAAGAGGTCCTCCATTAA
AAGGAATCCTAGAGCCAGCAGTGAAACGGTAGCTACTAAAGCGTA
Found at i:265718 original size:96 final size:96
Alignment explanation
Indices: 265544--265742 Score: 317
Period size: 96 Copynumber: 2.1 Consensus size: 96
265534 AGTTTGGATC
265544 CGAAAAAGTATGCTTAGGCAGTTCTTTCGCTGAGCACAAGAGAATAAAGAGGAATTTTTATCATG
1 CGAAAAAGTATGCTTAGGCAGTTCTTTCGCTGAGCACAAGAGAATAAAGAGGAATTTTTATCATG
265609 AAAAATCCATATTATTATCGAAGAGAAGGAA
66 AAAAATCCATATTATTATCGAAGAGAAGGAA
* * *
265640 CGAAAAAGTATGCTTAGGCAGTTCTTTCGCTGAGCACAAGAGAATAAAGAGGAATTTTTCTCTTT
1 CGAAAAAGTATGCTTAGGCAGTTCTTTCGCTGAGCACAAGAGAATAAAGAGGAATTTTTATCATG
** *** *
265705 TCAAATTGTTATTATTATCGAAGAGATGGAA
66 AAAAATCCATATTATTATCGAAGAGAAGGAA
265736 CGAAAAA
1 CGAAAAA
265743 ACCCTAAATC
Statistics
Matches: 94, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
96 94 1.00
ACGTcount: A:0.39, C:0.13, G:0.21, T:0.28
Consensus pattern (96 bp):
CGAAAAAGTATGCTTAGGCAGTTCTTTCGCTGAGCACAAGAGAATAAAGAGGAATTTTTATCATG
AAAAATCCATATTATTATCGAAGAGAAGGAA
Left flanking sequence: Indices 265044 -- 265543
CAAACTACACGAAAGTTGCCCCTTTTTCATGGAGATTTACCCATCACAGAGATGCATAGAGGAAC
AGAACGAACTTCATATATCCCTTTTCCACTCAATCCAGAAACAAGATCGGACGTTATTCCGGTTC
GTCTCCATTTTAGTGAAACTCTTCCTCAAGCAAGGCAGCCGATAAGTCATCGAAGGCTTTGTGTG
AATCATGTAATAGTCAGCATTACTTCTTTTCAAGTTTCCCAAGGTGATTTCATATCTTTGAAAGA
AAATGATGCTATAATCTATTCAGAAATAAGGAGATCCTTCTATATCGAAATTTCAGTTTCTAAAA
TCATAGGAAAATTCCGGGATATACCGCTAAGAATGTGGAGAAGAAACAAAACGGAATGGTTCCGC
TTACTTAAAACTAAGAGGGGATGCCGCCTACTACTGAAAGACCCGTTTTTGCAACAGTTGCGTTC
TTCTATGCAAGACAAAGACTTAGAAAGAACAAAGAAGTTTGGATC
Right flanking sequence: Indices 265743 -- 266242
ACCCTAAATCTTACTACTAGAAGTCCTATAGTTTACAACTCTTCTTTCTATAGTAATTTGACCTC
TTGCTCCACCCATCAGTCTTCTATGAAGAGAAAAATCAAAAGCTCTTCCCTATCTACTCATTATT
CGGAGGTGAATCATAGAACACCAAAAGCTGTGCTATCTTATGGACCTAACATAGGTCACATCCCT
CACGTGCGCCAAGAGCACATTCGATAGCATCCTCTTAAGGTTTAAAGATCCAAACCTTCTTCTTC
TTAGCGGAAACGCACGTGGCCAAAACATATAAAGATCGGCATAGTCGCTCATAGGGGCATATCTA
TCCGGATAGAGGATAGTCTAGATCTTGATTCACTATTTCCATTTTTATTTTTAGATTTCTTTTTT
TTCTCTGTCTCGTACGAAGCAATGGGAGGCAAGCTATGACGGCAGGATGTGACCTTGCCTTTCGC
CCTGCTACCGCCGTTCTAAGTTCTTCTGACTAAACGAAGTTAAGA
Found at i:282413 original size:25 final size:25
Alignment explanation
Indices: 282385--282459 Score: 132
Period size: 25 Copynumber: 3.0 Consensus size: 25
282375 AAGAATAGCT
282385 CCCCAAGGGCTTCCTTCTTTATCTA
1 CCCCAAGGGCTTCCTTCTTTATCTA
282410 CCCCAAGGGCTTCCTTCTTTATCTA
1 CCCCAAGGGCTTCCTTCTTTATCTA
* *
282435 CCCGAAGGGCATCCTTCTTTATCTA
1 CCCCAAGGGCTTCCTTCTTTATCTA
282460 AGCGACTAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 48 1.00
ACGTcount: A:0.17, C:0.35, G:0.13, T:0.35
Consensus pattern (25 bp):
CCCCAAGGGCTTCCTTCTTTATCTA
Left flanking sequence: Indices 281885 -- 282384
TGCATCCCTTTGGTCCTTCTTCGCGTCTCATCTTAACATCTCAATATCCCAAGCTCAGTTTGAGT
GACTCCAGGAAAGGTAACACAATAGGGATTCTCTCTCTATCGCCTTGGTCTGTCTTGACTTAGTT
ATAGTACTTTTACCTAAAGTATCTTCTCTTCTCCGGTTCTAGCTTACGTTTGAGTTTCCTCTGAC
TACAAGGTAATTTCTCAGCTGGAGCAGAAGTGGACGAACAACACCTCCTTTCCTTGCATTAGCGC
CCGCTTTTCCACATCCACTTCAGGGAGAGAGCAAGTAGAAATCATAGCTTTAGGCTTTCGAGCCT
TTCTTCCTAGGACAGAAGCCTTTACTTTCACTTGAGCGGTTGTCTGGAACTGATGCTAGACCTTG
GGGCTGCAGTCCCTTCTTCTTAGCACGGATGTCCCTCTTCAATCCCCTGCTCCTACCATTGAAAG
AGCTAGGGGCTAGTAAGTCCTGCCAATATCAGGGAAAGAATAGCT
Right flanking sequence: Indices 282460 -- 282959
AGCGACTAATAGGCTTGGGTGGCTAGGGCACATGCTATCGAGGTTAGACGCCTGGTCCCTCTGGC
AGATGCGATTCAAGGATGTAGTTGGATGTGATTATCGGTGAAAGCATAGAAGGATCTCCTGTCAA
TAGTCACAGGGAATTAGACTATAGCTTTAGGACCAGACCAGTAATAGGTGGTGTAAATGTCCTTA
TTTATTATAGGATGAAGATGATTCACTCACCAAGAAGACCGTCTACTCGAGCAGTAAGAGTTGAT
TCAATTGCCAACAGAAGACCGTCTGCGACAAGAAGACCATCAGCAGCAGATGATTGAAGAGCGGA
TGCGTTGAGGAGATCAGCCCTAATTGAAGACCCGAGACTCTCAACCAAGAACTTCTATATATAAC
ACCAACCGCGGAACAGGAGCATGCGTTACACACGTCGTCAGCTAGCGGACGCAAGCAGAGTGGGA
CCTTCTCCGATAGTATCTTTCATCATAATATTGAAAGCTTCCCCG
Found at i:283041 original size:25 final size:25
Alignment explanation
Indices: 282992--283042 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
282982 AGTTGATATC
* *
282992 AAGATGAAAGGGAAAGACAATAAGA
1 AAGATGAAAGAGAAAGACAAGAAGA
* *
283017 AAGATGAAAGATAAAGACTAGAAGA
1 AAGATGAAAGAGAAAGACAAGAAGA
283042 A
1 A
283043 GGGGCTTTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.61, C:0.04, G:0.25, T:0.10
Consensus pattern (25 bp):
AAGATGAAAGAGAAAGACAAGAAGA
Left flanking sequence: Indices 282492 -- 282991
TGCTATCGAGGTTAGACGCCTGGTCCCTCTGGCAGATGCGATTCAAGGATGTAGTTGGATGTGAT
TATCGGTGAAAGCATAGAAGGATCTCCTGTCAATAGTCACAGGGAATTAGACTATAGCTTTAGGA
CCAGACCAGTAATAGGTGGTGTAAATGTCCTTATTTATTATAGGATGAAGATGATTCACTCACCA
AGAAGACCGTCTACTCGAGCAGTAAGAGTTGATTCAATTGCCAACAGAAGACCGTCTGCGACAAG
AAGACCATCAGCAGCAGATGATTGAAGAGCGGATGCGTTGAGGAGATCAGCCCTAATTGAAGACC
CGAGACTCTCAACCAAGAACTTCTATATATAACACCAACCGCGGAACAGGAGCATGCGTTACACA
CGTCGTCAGCTAGCGGACGCAAGCAGAGTGGGACCTTCTCCGATAGTATCTTTCATCATAATATT
GAAAGCTTCCCCGCCCGATGCTTTGTTAATGTCAGAGTTGATATC
Right flanking sequence: Indices 283043 -- 283542
GGGGCTTTCTTAGAAGAATTCCCACTTGGACTGGTAGTGAGAACCCGATCTCCAGAAGCTAATTG
GCAAGGTTCGACTTGACCGGAGCGGATCGCAACTCAAGCACAACTAGAGTTCACTCACCCACGTG
CCCAATACTTGATGTGATGACTCTAGCCCCATGTCGGCTTCATTGACGAGTCATGATGCTGCGAT
ATAGGATCAAAATCGACTTTCATTTCACTTAACTCATCAAAGCAAGGAGTGGCTACTAGATAGAC
AATTAGTTCCGAGACTAAGAGATTGGGCTATCGGCCGGTATCAGTTGAAGTCAACAAAGAAGGAA
AGCCTTCCCCCAATCCAACATTTTCAGGTGAAAAGAAGATAGATGACTGAGAGTCACGGGATTTT
GAAAGCGCCGCATCTAGCTCAGCAGTTTCTTCAAAAGAGATGACGGATACAGAGCGGTTACCACT
TGTAGGCTCATTCACCAACTAGGCCATGAGTTTGCTTTAACGAGT
Found at i:292948 original size:18 final size:18
Alignment explanation
Indices: 292908--292950 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
292898 ACCGCCCTGC
292908 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
292927 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
292944 CATAGTC
1 CATAGTC
292951 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 292408 -- 292907
CGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAG
CGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAAC
CTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAA
AGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAA
GACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCT
GCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTCAGCGTCAC
GAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCCTTTGAATCTTCAGTAGGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 292951 -- 293450
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:294588 original size:21 final size:21
Alignment explanation
Indices: 294562--294605 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
294552 ATATCTAGTT
294562 TGAATTCTAAGACCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
*
294583 TGAATTCTAAGGCCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
294604 TG
1 TG
294606 CTCTCAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.39
Consensus pattern (21 bp):
TGAATTCTAAGACCCTCTTTA
Left flanking sequence: Indices 294062 -- 294561
CCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTG
CTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAGAACTTCGATA
GGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAAGAACTTTCACTTT
CCATAACCAAAATGAAAGAAAGTCAACCTATTCCTGCAATTGCGGTCAGTCTCGCTACCTCTTTA
GTTGCCGCCCCCTACTTGCTCATTCGCAATGACTACCACAAGAAAGTAGCCCCTATCTCTAAAGG
GGCTTATGCACTCCACGACTTTCTTATGTTATGGCGAAGACTGAATTTAGCTTCCAACCCTAGTC
AGCAAGCTTCAAAAGTCCTTTCTCCTTTCTTTTCCGAAACTCAAATAGAAAACTCTCCCCATGGG
ACCGGGGTTTGAGGTTGTCATACCACTTTCATCCGATATCTAGTT
Right flanking sequence: Indices 294606 -- 295105
CTCTCAAAGACCGGCTTTTACAGAACTGAGATTCCATAGGCCGAAACGAAGCCCTTTAAAGGTAG
AATTAGGAGTCGAAGCCATGCATTTAGCCCGATTGCTATTCGCCCTTTTTAGCACTAGACTGACA
TTCTCATTTCGCTTGTTCAGTTCAACGAAAGCCGGTACTAATCAAGCACAGTTTAGCCCTATGAT
TGAATTGCGATAGTTGGATTCCCTCTTCCTATAGCTATGACTGGCAACCCCTATAAGTCAGTTTT
TACTCCCTCTTTTAAGGTCGAGCCTATAGAAAAGTAAATATGGTCTAGCTAGTTATCACTTCTCC
CCCTATAGTTATAGCAGTACTGGGGAATTCCTCTATCTTCTTTGAATGAGGAGAGAGAGTACTCA
TTCCTCTCCCTCTGGTCGAGTGGCTTCGCTCCTATAAGCTAGTTCTCACTTCCGAGCTCTAACTC
CTTACTTTCTTTCCCACCGTAGAACTCCAATCGAAAGGGGAATCT
Found at i:296211 original size:25 final size:25
Alignment explanation
Indices: 296183--296232 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
296173 AAATTGGGGT
296183 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
296208 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
296233 GGAGTTGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (25 bp):
AGCTCAGGAACTATAGAATCTCTCA
Left flanking sequence: Indices 295683 -- 296182
GTGCCATTTCTTCTCTTGGAGGCAGGGCAATAGATTCATCTTGTCCTTGGCTTGTGAAGGGAATG
AGGTAGGGTAGCCAAAGCCCCCAACAAAGGGATAGGGCAATCCTTCCCAAGTAATGCATAAGCAA
GATCAGGACTAGAGGGGTGTGAAGAGTAGGGGGATCTCTTGTGCAAAGCAAAGACAGGTACGTGC
TAGCAAAGAAGGGAAGTGGCAAGGGATTGAAAAGAAGAAGAAAGAAGAGAAAGTTAGTACACAGA
GTCTTCCCCTGCCTAATTGATCTAATGATAAAGAAGTAGGCTAAGTAAAATAGAAAGTGTGTGTA
AACAATAAGTAATGACTTGCTTTGTGAGAGCTCAGTTTCTAAGACGAAGGCTAAGAATTCTCTAC
TAGAGGGATTGAAAAGATCGAGGGTAATTTCTGAGTCTTGATGGACCTTTCTTATTATAGGCCAA
AGGAATAGCTAAGGACTTCTTCCCTCATTCTCATCAAATTGGGGT
Right flanking sequence: Indices 296233 -- 296732
GGAGTTGAATAAACTCTTTTATGCTAGTGGAATTGGGAAGCATGATAAGTCCGTACTCCACATTC
TAGCTTCATCCTTGGTTTTCAAAGAAAGGAAACTTCAAAGACTGACAGAAGAGAAAGGTAAGATA
ATCCTTTCTGGCCTTAACTGAAAGCGGGGGAGGCCCAGGTCTACATACAGGTCTTGGATCAATAT
CATCCTCCAATTGCTAGGGAAAGAAGATCGGGATTAGTCTCCTTGCCATTGCTACTGTCTTTGAA
AGTCTAGCTATCCTCTCCTTGTCATGCTTAGTTATTCTGCATTGCTCCTTCTTCTGATCTTGCTT
TCTTGCCTTATAGAACTGACCTTTGTCCCCTCCTTCCGGTTTTAACTCACTTAAAGTCCATTCCT
TGCTCTTGCCTAGTTCTAGGCTTAGACGAAAGAGCTCATTCATAGATTCCATCTTTCTAGCATTT
CATGTCTTTCTTCCTTCAACTCTAATTCATGCCATGAATTGTTAA
Found at i:324176 original size:12 final size:12
Alignment explanation
Indices: 324159--324188 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
324149 GGAGAGGCAT
*
324159 CTGACTTTCTTA
1 CTGACTTTCCTA
324171 CTGACTTTCCTA
1 CTGACTTTCCTA
324183 CTGACT
1 CTGACT
324189 GAATCACTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.30, G:0.10, T:0.43
Consensus pattern (12 bp):
CTGACTTTCCTA
Left flanking sequence: Indices 323659 -- 324158
TAACTTACCGCTCTCTACTATAAGAAAATCCAAGAAAGAGAGTCGCTCCATAATAAATAACTGCC
ATTAATTACACACACGCAAGTAGTGGCTCGGCTAGAGGAAGAAGCCGGAGCCTATGCACTACCGA
AGAATGGACCTGATAGAATCAATCGATTGCATAAGATATACCAAAACCACTTACTGGTCTTGCAT
AAAGAAAAAAAGAAGTCAAGTAGACTCGGAAAGAAAAGAGATAGTGAAACCCTCTCCCGCCTTTT
CTATCTATCCTTAGAAGTAGGACGAGTGTCCTACCTAATTGTTAGATTAGAATAATGGAGAAGGG
AGAGGTCTTCAAAAAAACCTATACTCCCACTTTCCTTTCTTTGAGATTTCCAAAAGGTGAGATTT
CGCAACAAAAATTGGGTGGGCCCCATAAAGAAAGAGTGAGCGCTCACTCTTTCTTTATGGGGAGA
ACCGCATCTATTCAAAGTAAATGTTTCGGCCTGCAGGAGAGGCAT
Right flanking sequence: Indices 324189 -- 324688
GAATCACTTGAATCAGTTGAAGGAGGTTTCTACAGGAAGAGTTGCGACTCCGCGTCGAGGCGGGC
GGGGGTTCATGACGAGTGGGCATGAACTGTAACCAAAGAAAAGTAAGCCAACCACGAATTCCTGA
ACCGTAAAGGGAACCGCCCTGTAAAGAGCCTCGCCTAAAGGACCAGACCGGGAGCTGAGAACAAG
ATCGAAAGCGCAACTTCTCATTCGAAGCATGAAAGTGGTCAGGTCACTTATTCATAAGGGATAGG
ACTGGCCTTATAGAAGGTTGGGGCTTGCTCGAAATCTGTCAAATACGAGCCCTTCTTTCTCTATT
CAATCCACGGCCTACCTCGATACACCTGTGTCACAACGGCTTATTTTTTGAGTGAGGGAAGCCAG
AGCATTGGTCAAGAGAGAGAAAGAAGAAGAACTATAGATCGAGAAAGTCACATTAGCTACACCAG
ACCAGACACACTTTCTTTTTTTTACTATTTTTTGACTGACCGGAT
Found at i:329434 original size:16 final size:16
Alignment explanation
Indices: 329409--329448 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
329399 TCCATCGTAG
329409 CGCA-AAAGAGCATCC
1 CGCAGAAAGAGCATCC
*
329424 CGCAGAAAGAGGATCC
1 CGCAGAAAGAGCATCC
*
329440 CGCGGAAAG
1 CGCAGAAAG
329449 TTTCCACTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.38, C:0.28, G:0.30, T:0.05
Consensus pattern (16 bp):
CGCAGAAAGAGCATCC
Left flanking sequence: Indices 328909 -- 329408
CTCAAATTCCAGCTTCAAGCGTTCTGCAGCTCATAATCATATTATGGAAAATGAGGCGTGGGAAA
ACCCAATTCTGTCCAATAACACCAAAAACCTCATTTTTCAGTCCTTCGGCCTTCGCAAACAAACA
GTCCGGCCAACCCAAGTAATCCCCCATAACATCAATCAGTACCGCAAAAGGCTCAAAATATGACT
AAGTCTCCAGCAGCTGCGGAGCGGGGGATAAAGGAACAGCAGGATTACAACATTGCACAGGATCA
ATCAGAATGCGGGAGCGCAGAGCCTTTAAGAGATAGGGGGTGCGGGAGCATAATACTTAATACTA
ATGATTCCCCGCGGTTTTTCATGCAGATTTGACCACGGTGTGCACCCCCCTTAACTTAACCCCTA
TTACGTAAGGGGGACCTTCGGCGGGATAAAAGAGAGTGGGGGAAAAGCAGCTACAGATACAGGAC
AAAAGAAGGAGTGGCGCACTTAAAGAGTAAAACAGTCCATCGTAG
Right flanking sequence: Indices 329449 -- 329948
TTTCCACTTTTCTGTCCAGCTGAAAAATGGAATGGAATAGTCTAAGATGCTTAATAGCTCCAACA
AGCGCGAAAGCCGTTGCTTCTTGCTTTCGAGCCCAAGCCTACGTTTGCTTAGTAAGGTTGCTTCT
TTTTATATCTCCTCAAAAAAATAAAGGCGAAAGGTTGCTTGCTTTACTTTGAGAAAGAAGTAGAA
AGAAGGTATTATATAATAAAAAAAGTAAAGGCGCGTTAGCGCTTTTTTTTTTTCAATAAGGGGCG
GAGCTTGAAGAAGCGAGCCTATCAGAGAAAAAAGTGCTAGTTGTAGCGCGCTAGCGCGCATTTGA
CTAAAAACATGGAAAGTCAAGGCTCTGGGCAACGAGTGGGGGGGAGCCTTGACTTGAAGCATTGT
ACAAGTGCTTAAGGCTCCTTCGGGCCATGGCCACAACTATCATATAAGGCAAGGCTTGGAAGCAA
GCTACCAGCGCCTATCGGCGGGAACTGGGCTTGGCTTGGTTAGTA
Done.