Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_059793
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 320439
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.27
Found at i:12862 original size:13 final size:13
Alignment explanation
Indices: 12844--12869 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
12834 GAGTCACTTT
12844 AGAATCTAAAATC
1 AGAATCTAAAATC
12857 AGAATCTAAAATC
1 AGAATCTAAAATC
12870 TCTCCGATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.08, T:0.23
Consensus pattern (13 bp):
AGAATCTAAAATC
Left flanking sequence: Indices 12344 -- 12843
CGAGCAAGCTGTTATACATAAAAGTTAATAAAGTAAACCTGTCTTCATTCGGGTTCTCGTCAAGC
AAGTGCCGAATGACCCTTGGAAAGGGGGCGGAACGGGTAGGTGGGGTCAGACCATACTCCCGATA
AAGACTATCAAGGAGATCGCTCATTTTCTCAATGAGATTGGTTTCCAGAGTCTCACGTACTTGAG
CCTGGTAATTCTCTGGAGTGAAGTTTCGCAGTCGTCTGGAAAGTGCCCAGGTCGAAACGATCCAA
ATAGTCGAGGGGATCATATACGTAGTAGCAAGTTCAAGTAGATATTGAACGACAAGAGTTGGTTC
CATTTGGTATTTTTTTTATAGATTCTGCTCCGCCTGCTTTTACTCACTTTTTTATGGTAAGCAGG
ACTTGAGAAGTCTTGTTTTACGCCAGACTTCTTTGGCGGTGTATATGGTTGGTTGTTGACCAACG
GAAAGCATGGGAGTTGTTGGGAATTGAACCCAACTGAGTCACTTT
Right flanking sequence: Indices 12870 -- 13369
TCTCCGATAAAACAACGTTCGACTTGCATGTGTTAAGCATATAGCTAGCGTTCCTTCTGAGCCAG
GATCAAACTCTTCTTTTGACTATGATTTGGCCCTACAGTGGTAGAACCTGGTGAACCGGGCGTAC
TATTTTACTTTACTTGCTCTTTCTTCTCTTATTAAATTTATAGTTAGATGAACAGATCACTCCTA
AAAGCAACCGTTCTCTTATTATACGATACCCTCGCCATGGATGATACGATTCCAAGAGACAAAAG
CTCGATTAGCTACTTAGGATGAACCACACGGAGGCGATCTCGAACATAAAAAATATATATAATTT
TAAAAAGACAGAAGACCTTCCTAAGAGAGATGGAGAACTCACCCCGTCTTCTCTCCTAGAAATAT
TGTTTACACGAGCTTTAGTAAGCCTATCCTGCTAACATCCTATCGCCTGCCTGCCACTACGCTTG
CTGCCAAGCCATCTCCGACTCCTTGAACGAGGGGATGAAAGAGCA
Found at i:42171 original size:12 final size:12
Alignment explanation
Indices: 42154--42183 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
42144 GGAGAGGCAT
*
42154 CTGACTTTCTTA
1 CTGACTTTCCTA
42166 CTGACTTTCCTA
1 CTGACTTTCCTA
42178 CTGACT
1 CTGACT
42184 GAATCACTTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.17, C:0.30, G:0.10, T:0.43
Consensus pattern (12 bp):
CTGACTTTCCTA
Left flanking sequence: Indices 41654 -- 42153
TACCGCTCTCTACTATAAGAAAATCCAAGAAAGAGAGTCGCTCCATAATAAATAACTGCCATGAA
TTACACACACGCAAGTAGTGGCTCGGCTAGAGGAAGAAGCCGGAGCCTATGCACTACCGAAGAAT
GGACCTGATAGAATCAATCGATTGCATAAGATATACCAAAACCACTTACTGGTCTTGCATAAAGA
AAAAAAGAAGTCAAGTAGACTCGGAAAGAAAAGAGATAGTGAAACCCTCTCCCGCCTTTTCTATC
TATCCTTAGAAGTAGGACGAGTGTCCTACCTAATTGTTAGATTAGAATAATGGAGAAGGGAGAGG
TCTTCAAAAAAACCTATACTCCCACTTTCCTTTCTTTGAGATTTCCAAAAGGTGAGATTTCGCAA
CAAAAATTGGGTGGGCCCCATAAAGAAAGAGTGAGCGCTCACTCTTTCTTTATTTTATGGGGAGA
ACCGCATCTATTCAAAGTAAATGTTTCGGCCTGCAGGAGAGGCAT
Right flanking sequence: Indices 42184 -- 42683
GAATCACTTGAATCAGTTGAAGGAGGTTTCTACAGGAAGAGTTGCGACTCCGCGTCGAGGCGGGC
GGGGGTTCATGACGAGTGGGCATGAACTGTAACCAAAGAAAAGTAAGCCAACCACGAATTCCTGA
ACCGTAAAGGGAACCGCCCTGTAAAGAGCCTCGCCTAAAGGACCAGACCGGGAGCTGAGAACAAG
ATCGAAAGCGCAACTTCTCATTCGAAGCATGAAAGTGGTCAGGTCACTTATTCATAAGGGATAGG
ACTGGCCTTATAGAAGGTTGGGGCTTGCTCGAAATCTGTCAAATACGAGCCCTTCTTTCTCTATT
CAATCCACGGCCTACCTCGATACACCTGTGTCACAACGGCTTATTTTTTGAGTGAGGGAAGCCGG
AGCATTGGTCAAGAGAGAGAAAGAAGAAGAACTATAGATCGAGAAAGTCACATTAGCTACACCAG
ACCAGACACACTTTCTTTTTTTTACTATTTTTTGACTGACCGGAT
Found at i:64979 original size:25 final size:25
Alignment explanation
Indices: 64951--65000 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
64941 ATTCAACTCC
64951 TGAGAGATTCTATAGTTCCTGAGCT
1 TGAGAGATTCTATAGTTCCTGAGCT
64976 TGAGAGATTCTATAGTTCCTGAGCT
1 TGAGAGATTCTATAGTTCCTGAGCT
65001 ACCCCAATTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (25 bp):
TGAGAGATTCTATAGTTCCTGAGCT
Left flanking sequence: Indices 64451 -- 64950
TTAACAATTCATGGCATGAATTAGAGTTGAAGGAAGAAAGACATGAAATGCTAGAAAGATGGAAT
CTATGAATGAGCTCTTTCGTCTAAGCCTAGAACTAGGCAAGAGCAAGGAATGGACTTTAAGTGAG
TTAAAACCGGAAGGAGGGGACAAAGGTCAGTTCTATAAGGCAAGAAAGCAAGATCAGAAGAAGGA
GCAATGCAGAATAACTAAGCATGACAAGGAGAGGATAGCTAGACTTTCAAAGACAGTAGCAATGG
CAAGGAGACTAATCCCGATCTTCTTTCCCTAGCAATTGGAGGATGATATTGATCCAAGACCTGTA
TGTAGACCTGGGCCTCCCCCGCTTTCAGTTAAGGCCAGAAAGGATTATCTTACCTTTCTCTTCTG
TCAGTCTTTGAAGTTTCCTTTCTTTGAAAACCAAGGATGAAGCTAGAATGTGGAGTACGGACTTA
TCATGCTTCCCAATTCCACTAGCATAAAAGAGTTTATTCAACTCC
Right flanking sequence: Indices 65001 -- 65500
ACCCCAATTTGATGAGAATGAGGGAAGAAGTCCTTAGCTATTCCTTTGGCCTATAATAAGAAAGG
TCCATCAAGACTCAGAAATTACCCTCGATCTTTTCAATCCCTCTAGTAGAGAATTCTTAGCCTTC
GTCTTAGAAACTGAGCTCTCACAAAGCAAGTCATTACTTATTGTTTACACACACTTTCTATTTTA
CTTAGCCTACTTCTTTATCATTAGATCAATTAGGCAGGGGAAGACTCTGTGTACTAACTTTCTCT
TCTTTCTTCTTCTTTGAAATCCCTTGCCACTTCCCTTCTTTGCTAGCACGTACCTGTCTTTGCTT
TGCACAAGAGATCCCCCTACTCTTCACACCCCTCTAGTCCTGATCTTGCTTATGCATTACTTGGG
AAGGATTGCCCTATCCCTTTGTTGGGGGCTTTGGCTACCCTACCTCATTCCCTTCACAAGCCAAG
GACAAGATGAATCTATTGCCCTGCCTCCAAGAGAAGAAATGGCAC
Found at i:66602 original size:21 final size:21
Alignment explanation
Indices: 66578--66621 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
66568 TCTTTGAGAG
66578 CATAAAGAGGGCCTTAGAATT
1 CATAAAGAGGGCCTTAGAATT
*
66599 CATAAAGAGGGTCTTAGAATT
1 CATAAAGAGGGCCTTAGAATT
66620 CA
1 CA
66622 AACTAGATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.25
Consensus pattern (21 bp):
CATAAAGAGGGCCTTAGAATT
Left flanking sequence: Indices 66078 -- 66577
AGATTCCCCTTTCGATTGGAGTTCTACGGTGGGAAAGAAAGTAAGGAGTTAGAGCTCGGAAGTGA
GAACTAGCTTATAGGAGCGAAGCCACTCGACCAGAGGGAGAGGAATGAGTACTCTCTCTCCTCAT
TCAAAGAAGATAGAGGAATTCCCCAGTACTGCTATAACTATAGGGGGAGAAGTGATAACTAGCTA
GACCATATTTACTTTTCTATAGGCTCGACCTTAAAAGAGGGAGTAAAAACTGACTTATAGGGGTT
GCCAGTCATAGCTATAGGAAGAGGGAATCCAACTATCGCAATTCAATCATAGGGCTAAACTGTGC
TTGATTAGTACCGGCTTTCGTTGAACTGAACAAGCGAAATGAGAATGTCAGTCTAGTGCTAAAAA
GGGCGAATAGCAATCGGGCTAAATGCATGGCTTCGACTCCTAATTCTACCTTTAAAGGGCTTCGT
TTCGGCCTATGGAATCTCAGTTCTGTAAAAGCCGGTCTTTGAGAG
Right flanking sequence: Indices 66622 -- 67121
AACTAGATATCGGATGAAAGTGGTATGACAACCTCAAACCCCGGTCCCATGGGGAGAGTTTTCTA
TTTGAGTTTCGGAAAAGAAAGGAGAAAGGACTTTTGAAGCTTGCTGACTAGGGTTGGAAGCTAAA
TTCAGTCTTCGCCATAACATAAGAAAGTCGTGGAGTGCATAAGCCCCTTTAGAGATAGGGGCTAC
TTTCTTGTGGTAGTCATTGCGAATGAGCAAGTAGGGGGCGGCAACTAAAGAGGTAGCGAGACTGA
CCGCAATTGCAGGAATAGGTTGACTTTCTTTCATTTTGGTTATGGAAAGTGAAAGTTCTTTCGTT
TAGTACGAGATCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTTCTGTTCAAAA
ACCTCGTCCGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCAGTTCTTCCATACCAACTT
AGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGG
Found at i:68254 original size:18 final size:18
Alignment explanation
Indices: 68233--68275 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
68223 CAACCTTGTT
68233 GACTATGACAACAG-TCGC
1 GACTATGA-AACAGATCGC
68251 GACTAT-AAACAGACTCGC
1 GACTATGAAACAGA-TCGC
68269 GACTATG
1 GACTATG
68276 GCAGGGCGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.35, C:0.26, G:0.21, T:0.19
Consensus pattern (18 bp):
GACTATGAAACAGATCGC
Left flanking sequence: Indices 67733 -- 68232
TACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGA
GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTAC
CTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATAACACTTCT
CCTTCCGACTTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGT
CCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAATCAAAAGATAGGA
GAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGAT
CGCCCTCCCAATTCGAAGTTTTTTCCTGGAAGTTTCAACCTTGTT
Right flanking sequence: Indices 68276 -- 68775
GCAGGGCGGTACGCTCTGCTCTCTCGCGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTG
AAGATTCAAAGGGCGAGCACTGAAATGAGAAAGGCTTGTAGACTCGTGACGCTGAACGAGACATT
CGAAAACTAAAGCGCACACTAGAAAGTGCTTCGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCC
CGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTCAGAGTCTTCGCCTTTAGATAACAAAA
AGTGTCCGCCCCTTAGGTCGCCAAACTACGACGAGAGTTTCGCCTTTTGAAGCGCCAGTCGCGTA
GGGCGACCGGGCCAGGCCGAGTCAGAAAGGCTTTGATGACTCAAGGTTCATATTAGGGAAAGGAG
AGTGAGGGGAAGAGGGGGCAGCCCTCGGCCCGATCATCCAATTCGCTCCAACAGACAGGCATGGT
TCTGTAGTCAAAGCAACTTCGTCACTTTCGTGTACCCATCGGACG
Found at i:107095 original size:16 final size:16
Alignment explanation
Indices: 107070--107109 Score: 55
Period size: 16 Copynumber: 2.6 Consensus size: 16
107060 AAAGTGGAAA
*
107070 CTTTCCGCGGGATCCT
1 CTTTCTGCGGGATCCT
*
107086 CTTTCTGCGGGATGCT
1 CTTTCTGCGGGATCCT
107102 CTTT-TGCG
1 CTTTCTGCG
107110 CTACGATGGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 4 0.18
16 18 0.82
ACGTcount: A:0.05, C:0.30, G:0.28, T:0.38
Consensus pattern (16 bp):
CTTTCTGCGGGATCCT
Left flanking sequence: Indices 106570 -- 107069
TACTAACCAAGCCAAGCCCAGTTCCCGCCGATAGGCGCTGGTAGCTTGCTTCCAAGCCTTGCCTT
ATATGATAGTTGTGGCCATGGCCCGAAGGAGCCTTAAGCACTTGTACAATGCTTCAAGTCAAGGC
TCCCCCCCACTCGTTGCCCAGAGCCTTGACTTTCCATGTTTTTAGTCAAATGCGCGCTAGCGCGC
TACAACTAGCACTTTTTTCTCTGATAGGCTCGCTTCTTCAAGCTCCGCCCCTTATTGAAAAAAAA
AAAGCGCTAACGCGCCTTTACTTTTTTTATTATATAATACCTTCTTTCTACTTCTTTCTCAAAGT
AAAGCAAGCAACCTTTCGCCTTTATTTTTTTGAGGAGATATAAAAAGAAGCAACCTTACTAAGCA
AACGTAGGCTTGGGCTCGAAAGCAAGAAGCAACGGCTTTCGCGCTTGTTGGAGCTATTAAGCATC
TTAGACTATTCCATTCCATTTTTCAGCTGGACAGAAAAGTGGAAA
Right flanking sequence: Indices 107110 -- 107609
CTACGATGGACTGTTTTACTCTTTAAGTGCGCCACTCCTTCTTTTGTCCTGTATCTGTAGCTGCT
TTTCCCCCACTCTCTTTTATCCCGCCGAAGGTCCCCCTTACGTAATAGGGGTTAAGTTAAGGGGG
GTGCACACCGTGGTCAAATCTGCATGAAAAACCGCGGGGAATCATTAGTATTAAGTATTCTGCTC
CCGCACCCCCTATCTCTTAAAGGCTCTGCGCTCCCGCATTCTGATTGATCCTGTGCAATGTTGTA
ATCCTGCTGTTCCTTTATCCCCCGCTCCGCAGCTGCTGGAGACTTAGTCATATTTTGAGCCTTTT
GCGGTACTGATTGATGTTATGGGGGATTACTTGGGTTGGCCGGACTGTTTGTTTGCGAAGGCCGA
AGGACTGAAAAATGAGGTTTTTGGTGTTATTGGACAGAATTGGGTTTTCCCACGCCTCATTTTCC
ATAATATGATTATGAGCTGCAGAACGCTTGAAGCTGGAATTTGAG
Found at i:145658 original size:24 final size:24
Alignment explanation
Indices: 145599--145665 Score: 70
Period size: 21 Copynumber: 2.9 Consensus size: 24
145589 TGGCTTTTAC
* *
145599 GAAAGAAAGTGAGTTAGACAAAAA
1 GAAAGGAAGTGACTTAGACAAAAA
*
145623 GAGAA-GAA---ACTTGGACAAAAA
1 GA-AAGGAAGTGACTTAGACAAAAA
145644 GAAAGGAAGTGACTTAGACAAA
1 GAAAGGAAGTGACTTAGACAAA
145666 TCTTTTTTGT
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
20 2 0.06
21 16 0.47
24 14 0.41
25 2 0.06
ACGTcount: A:0.55, C:0.07, G:0.25, T:0.12
Consensus pattern (24 bp):
GAAAGGAAGTGACTTAGACAAAAA
Left flanking sequence: Indices 145099 -- 145598
GCTAATATACACCATTCGAGAAAAGAGAATAAGCCATGCTAATGTCATGGAAGAAAAAATATGGT
TTAGGCACGGATGCCTCACTCCGGCTGCTACTCTAAAAGGAGACTCGGTATCGGATGTATCATTT
CGTAATGGGGCTTGCGCATAGATGGCCTCTATGCCAACATTCATTTCGTTCTAAAGAGCGGGTCG
GTGTAATAATAGAATATATAAATAAGGTTGATCCAAAGAAGAAGTTGTCGTCTATTAGCAAACAA
TCGGATGCATTGCCATTCGAAGAAAAGACAGTTTCACTCCTTTTCCGAGTTGATCGGGTCTAGTC
AGCCATGAGAATGCGGAGGTGGGCTTTTTTCTTGTCTTTCTTTTCTATTTCCTGGATCCGGCGGG
GGTAGAGTGGGGTTTCTACCTGGCTTTTCAACTTGGCACGTTTAAAGAAGTTGCCTAAACTAAGT
GTACAAAGGGGGCATAAAGTTCTTCTTTTCAGGGTTGGCTTTTAC
Right flanking sequence: Indices 145666 -- 146165
TCTTTTTTGTCGATAACCTCAGACCAATCCATCGAATATTGATTAATACGTAATCGATAGAACAC
TACTTGAAAAAGAAAACGGTTCTTCTGCTCAGAAATGAAATGTTCCTGGAAATTCTTGCTCCCAT
TAGACCATTTGTATCTATATGCATTAGGATCCCAATTCATGGATCTCTCGGTTCGAGAAAGAAAA
AGAAGAGGATCGAACCATTTCTTCTGACTCTGTTTCAAATTCGATAAATGTTGGTTGATCGTATA
TTTCATTATAGTTCTATGATTCAGAGTATCATTTCCATTTCCTATTGGATCCCTTTGAATTCCAT
ATTCGAAGTTGCGATCGGATCTATTCATTAAAAAGAATTGAGTCAATACATTTCTTATGTACCCA
TAGGTACTATATTGGATTTGAATCAGATTTAGGATCAATCCATATTGATTGACTGCCTCCATTAT
GTTGTTTCTAGCAAATACCACTCTTTTTTGTTTTGGATCTTCCAA
Found at i:152693 original size:21 final size:21
Alignment explanation
Indices: 152667--152710 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
152657 ATGCTTGGAC
152667 AGGTAAAACAGTACGCCCACT
1 AGGTAAAACAGTACGCCCACT
152688 AGGTAAAACAGTACGCCCACT
1 AGGTAAAACAGTACGCCCACT
152709 AG
1 AG
152711 AGCCTTCAGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.39, C:0.27, G:0.20, T:0.14
Consensus pattern (21 bp):
AGGTAAAACAGTACGCCCACT
Left flanking sequence: Indices 152167 -- 152666
AAGCACCCACCCCCGCAATGAGAAACAGAATCAAGAAGAACAGAATATAACAATTTTGACCCATC
GAAACTCTTATTCGATAAATAAGGATTAAAGTGATTAAAACAAACAAAAGACACAAAAAAGAACG
GGTGGACACTGGAGTGAGGCCCTCCGCCCCTAGAAAATAAAAAGAAATGGTTATTATAGCACTAC
TGAGCACCCTGAGTATGAAAAAAGGAGAAAACATGTTGATCTCTTTCCGTATAAACTATCCCCCT
ATTTTTGCCCTATCACTAGTGATTACTCCCGATCCGAAGCACCCCCTTTCCATGAACCTTCCACG
AATAAAGAAAACACTTTTCTCTTTTCAAAGCTACGAGAATTTATGTTTCGCTGCTTTTCTACTTG
GCTGTACGACATGAGTTTCAGTATACCGTCAACCCCCGCTGAAGCACTGGAAAAATGTTGACCAC
GATTTCTAGCGCTTTTCAAAAACCATTTGCTTGCAATGCTTGGAC
Right flanking sequence: Indices 152711 -- 153210
AGCCTTCAGCCTTCATACATACTATTAATAAAGTACACTGAACACCAACCCAATCTCGATGAAAA
AAGTAGAAGCAACTAAAGAAGGGTGACGAAGCTTCTTTGCATCCCATAGTGCTGTCGCACTAAGC
GACTACCGTTCCAGAGTCGTACAACGAAGTGATTAGCATACCAGAGTGACGCAAGGCTCTAAGCT
CGTACCTTATAAGTAAGCTCTTTATGCTCTCTCCGCTCGCTCCTTTTCGTAGCGTAGATCTTTCT
TCTCTTAAGAGATTTTGAGAAGAGTGAGTGCGCTTTCGAAAGTTTCGACTTTTCGATCTTTCTTC
CCTTAGCGCACAAGCACTAAGCAAGTAAACTACCTTTTTTCTTCTCTTTCGTCCCAGACTCTTCT
TTTTTTTATTAAAAAAATAATCCAGATATCTCCGATAAACTACACTAAAGGGAACTGTTAAGTAC
AGACGATGCCTAGAAATGATAGTAACACCTGGGGCCTTCGAAATA
Found at i:181915 original size:27 final size:27
Alignment explanation
Indices: 181877--181928 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
181867 ACTTGTCAAT
*
181877 AAACAATTCTATGTTCAATTTGACTAC
1 AAACAATTCTATGTTCAACTTGACTAC
*
181904 AAACAATTCTATGTTCCACTTGACT
1 AAACAATTCTATGTTCAACTTGACT
181929 CCTACCCATA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.37
Consensus pattern (27 bp):
AAACAATTCTATGTTCAACTTGACTAC
Left flanking sequence: Indices 181377 -- 181876
AGCCGAAGTCCTTTGAAGGTCTGCTTGCACGGAGATAGTGATTCGATCTTCCCTGCCTTCCTTCG
TAGTGCTTGCGAGATGGACTCTTTCATCGGAGGGTGCTATTTCACCCATTGGTCTTGAGAAATCC
TACTTCACCTACCTTTGGAACTCAGATCTCAAGAGAATGACCGGACTACCGGACTTCCGGTCAGT
GCTGCTAGACCTCTAAGCAAGTGTTGTGAGCCCACCGGCGAGTGAGGGCTAAACGGTATTTATAG
ATTGAAACTAGAAAACCTTAATTCCTGAACTAGCCTCATGAACAAGCCAGTCTCAACTTTCCTGT
TCAACTTTATAGTGCGTCTATCTAAGGATAGATCTCGGTATCTGTGGAGAGGAAAAGAATGAATC
CTACTAATGCGTCAAAATCTAAAATTTATCTGTATTCCCCTTTCTTTATAGGTCTCGTGTTCCCC
CTATTGAACGAAATGCAAAAACCACATACCCACAAACTTGTCAAT
Right flanking sequence: Indices 181929 -- 182428
CCTACCCATACCGTGTTCAATTTGTATAGTTCCCATACCGTGTTCAATTGTACAACTACCAATTC
AATCTTGAGATTTAGTAAGAATAGCAGACGGTATACTAGTCAGGACTCTTCTTTTCTACGAACAA
GTCAGTACTCGCACTATTGGGAGAACATGCGTCAAAGAAGGTCGTTTTCTTTTCCGTCCTCGCAC
TATTGTACGAATTTCTCCCTGTACCTAAAAAAGTCTTTATTTCACGCTGGAGCATTTGTAAGCGA
CGGGATCTTAGCAGCTTCTTCCCGAGTTGCATTAGCTAAAGTGGATCTACGATCACGGGAACTAA
TCAATCGGTCTGTTCTGCCCCATAAGCATCTGGATGGTCTACGATCAGTGCTATTCGTACACCCT
ATGCCTGATTTCGCAACTTCGACCCTTTCCCTATCCAATGTAGCTGTAACTGCGCCTTATTGGCT
TCTTTTCAGGCTTTAACAAGCAAGTACGCAAACAGCCTTCGGTTC
Found at i:192687 original size:39 final size:39
Alignment explanation
Indices: 192632--192710 Score: 140
Period size: 39 Copynumber: 2.0 Consensus size: 39
192622 CCCATCCTTC
*
192632 AATATCATGATTGGGTCGACCAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
*
192671 AATATCATGATCGGGTCGACTAGGCCAGATCATGAGTGA
1 AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
192710 A
1 A
192711 TAGAAAATAG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.32, C:0.18, G:0.28, T:0.23
Consensus pattern (39 bp):
AATATCATGATCGGGTCGACCAGGCCAGATCATGAGTGA
Left flanking sequence: Indices 192132 -- 192631
GGAAGCCGGCTTGTGCTGGATTCCTGCATACCTCTGGCAGGCATCGCAGCTCTTAGCATGTGCTA
TGTAATCTGCAAGGACCGTAGGCCAGTAGTGGCCATGTCTCCGGATCTCTCGAATTTCCCTCAGC
GCGCTCGATCTACCTATCTTTCTGAGTTTGATTGGTTTTCGCTCCAGCTGACCTTTCCATTTAAT
CACTGACAAAACCTACCTTTCAATTCTTCTTACCCTATGAGCTTTCAGCAAAGGACAGATTTCTT
GGTCCATTGACATCGATCAACGAAATAGACCTCCTTCTTTCACTTTTGTCGTTGTCTTCCAATTC
AAATAGCCCCATGAAGTGAGTGTTCCGCGAGAAAAGAGAGGCTGACATCTTTTCTTATCTATCTA
TTTTCGTAAATGAAGAAGATAAGTGAGAGCTTACTGACTGCATCTTCTAAGAAGGGCTTGGAAGA
AGAAATAGAATCTCCTTTCTTTTTCGAGAAAAGGTCCCATCCTTC
Right flanking sequence: Indices 192711 -- 193210
TAGAAAATAGAAAATGTACATAGCAGTTCCAGCTGAAATACTTGGAATAATTCTACCACTTCTAC
TAGGAGTAGCCTTTTTAGTGCTAGCTGAACGTAAAGTAATGGCTTTTGTGCAACGTCGAAAGGGT
CCTGATGTAGTGGGATCGTTTGGATTGTTACAACCTCTAGCAGATGGTTTTAAATTGATTATAAA
AGAACCTATTTCACCAAGTAGTGCAAATTTCTCCCTTTTTAGAATGGCTCCAGTGGCTACATTTA
TGTTAAGTCTGGTCGCTCGGGCCGTTGTACCTTTTGATTATGGTATGGTATTGTCAGATCCGAAC
ATAGGGCTACTTTATTTGTTTGCCATATCTTCGCTAGGTGTTTATGGAATTATTATAGCAGGTCG
GTCTAGTAATTAGGGGGCGGCCGTTCGGTCGCCTATGATACTAGGACCAATAGGTCAAAAATGGG
TTTGTGCCGCAGGTGTTGAACGATCCACTCTACACAGGTGTGGGC
Found at i:205776 original size:20 final size:20
Alignment explanation
Indices: 205751--205791 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
205741 CAATATCAAT
205751 GAATAAAGATAAGTACAAAA
1 GAATAAAGATAAGTACAAAA
205771 GAATAAAGATAAGTACAAAA
1 GAATAAAGATAAGTACAAAA
205791 G
1 G
205792 CAAGAAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.63, C:0.05, G:0.17, T:0.15
Consensus pattern (20 bp):
GAATAAAGATAAGTACAAAA
Left flanking sequence: Indices 205251 -- 205750
GCATTGATGCCAGAAGAGGATGTTGTGCAAGAGTAGCAGTTCCATTCATTTCCAGTCAGTCCGGG
CAAGCGTCTTCCTTCCCCTTCTTCTTCCCTGCTCGGGCATATCGTAACTATTGATTCAATCGTGC
CATAAAACACCGTGATTTTGGTATCAAGTAAATTTCCCTTCCTAGACGTCAATTGAAACAACTTT
ATAAAACAGCGTCTTTTTCCTCATCAAGAGTAAAGATTACTCAGATCATGGGGAAGGGGGTGCTA
TAGCCCTTGTTCAAGAATGGCTTTTGTTCAATCAGACACTCTTAGAAGGCTCTCGTAACCGCTCT
TTCCTGTTGATGCGACGGTAAGAAAGAATATCATAAGAAAGCTCTTTGCCTGGTTCGGATCGTAC
CGTGGAAAGCACTACTTCCGGCTTGAATGATGTAGTTTCTTCGACCTGCTTTTCTCGCGATTATG
TTAGTGTTCAGTCGACCGCACCGTGGATACACTGCCAATATCAAT
Right flanking sequence: Indices 205792 -- 206291
CAAGAAATCAACTGGCATACCGTGGAATAGACTCTACCCTACGCTACAATCCTTTCTTCTCTTAT
GAAATTTAGAGTGTTAGGGACTCCTGCTACTAGGCTACGAACCTCATACCAAAGTCCTTCCCTTA
CTAATGTTCAATCGAGGCAGAATAAAATGGGAGTTCCGGAAATGAAATATCTGCATCTGCCCTTA
ACAATCAAGGTATCTTTGTCCAAGCATTCCCTTTCTCGTCATTTCTTCAAGAGCTTCTTCATGAA
CAGCAGATTAGAGGGCATCTATACCTTGTCTTCTACGCTCCTCTTCCTCATCTTCGGAGATGCCC
AATCAGCCCTTTAGTTCAATTTGTCCAATTCTTCCGGGCATTGGCAAGAAAGGAAAGACGGCGGA
TAGGGCCACGAAGCGCCCAACGAATTGAACTTGAGGATCACAACGCACTATATGCTTATCTGGTG
GATGCGCGTCTTGGGCTCTTTTACCGAAAACTAGAAATCTCGTAA
Found at i:269843 original size:20 final size:21
Alignment explanation
Indices: 269813--269856 Score: 72
Period size: 20 Copynumber: 2.1 Consensus size: 21
269803 AAGACAGGCA
269813 AAGGTAAGGGGAAAAACAGAT
1 AAGGTAAGGGGAAAAACAGAT
*
269834 AAGG-AAGGGGAAAAACAGTT
1 AAGGTAAGGGGAAAAACAGAT
269854 AAG
1 AAG
269857 AATGACTTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.52, C:0.05, G:0.34, T:0.09
Consensus pattern (21 bp):
AAGGTAAGGGGAAAAACAGAT
Left flanking sequence: Indices 269313 -- 269812
TCTAGCAAAGAAGTCAGCTATGGGCAAGACTTGGGGCGGGCCACCAAAGCGGGTTTAGCCGGTTA
GAGCTCAAGAGAATCGCTTCACGCCTTGCTTGCAAGAGCTAGACAGCAAAACCATTCCTAGCCAC
CATTGCTTTCGAAATAGCTTACATTTCAGGGAACATCTACTTGATAATTTTCTATAGTGAAAGCC
TTTTTCCAGGCAAAGACCCCACTCATAGGGTGAAGGCAGCCATCACTGGAGAATAGCTCCTAGCC
TTATTCTAAGAAGGCGCATGCCATCAAACGAAAGGAAGGGCCCAAACCGTTAGGGAGCATATGTT
TCCAATAGCAAGAGTCAGTCCAAGCAGCGGAACACGTTACCCATTTCAACTAGGGAAGTTTCCAA
ACTCAAATTCGAAATGAGATCTTCCATCTTGATTAGCATGGTAGGTAGGCATGAAAGATGAGGCA
AAGAATGTTCCGCATCTCCCCGGCCAGAAGCTTTCAAGACAGGCA
Right flanking sequence: Indices 269857 -- 270356
AATGACTTTGCTAGGAGTTAGGACCTTTCATCCAATACATGTCAGGGGATTTTGATCCCAATAGA
ATGCTATTTTACCTAGGTCAAAACCACGTTAAGGATACCTCTTTATACCCTTTCTATTATAGGCT
TAAAGCATGAGGGTGGACCCTTATTTTAGCTTGCCTATAGCAGGTATTAGAGAAGGATGACCCGC
ATGTGGGTGAAAAGCCTCTCTAATACTAATAGCGGAGAGTGATAGTACGATGGATAGGTCTCATC
AGAGGTTCTGGCTGGTATTGCTGCTATAAGTCCGTTCGGGGAGTCCGTGGCATAAACAAAGAAGG
ATTTGAGTCTGAGAAAGACTGTTTCCCCATTTTCATACGAATAGTGAGAAATCTCAGAGTTTATC
CAGTTGGGGCATAGAAAGAAGACCTGAACTCGGTGTTTCCTCAATCTGAATAGATCAATCTGGAT
TATAGGCCAGCAAGCCCGGAACCAGCAAGTGGGAGCCTGCTGGCA
Found at i:272118 original size:21 final size:21
Alignment explanation
Indices: 272092--272153 Score: 124
Period size: 21 Copynumber: 3.0 Consensus size: 21
272082 GTCAAAAAGG
272092 CTATAAGATGCTAGCTGAAAT
1 CTATAAGATGCTAGCTGAAAT
272113 CTATAAGATGCTAGCTGAAAT
1 CTATAAGATGCTAGCTGAAAT
272134 CTATAAGATGCTAGCTGAAA
1 CTATAAGATGCTAGCTGAAA
272154 GTAGATATGT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (21 bp):
CTATAAGATGCTAGCTGAAAT
Left flanking sequence: Indices 271592 -- 272091
TCATCTAGTGACTAACTAACCCGTTCGCAGCAAGCAAAGTACTCAATAGAGGGTGAGACCCTTTA
GGATATAAATAGATTTCTAAGTCTATTTGTATTCTGCTTCTTGAATAACAGCGCCTGTCTCTAGT
CATTTTTGCTAGAGGGATCAGTCAAGCTTATAATGACAAGGTAATGGCACTATTGGACATGGTCT
CTTATCATGTAAACGGAAGCAAGTCACATGGGTGTGGCCTGAAATTCATCCATGAACCACTACTT
CTCCATAGAAAATCCTTGAATATTCAGCTTCTACCAAATTATCATATTTGCAAAACTGGTATTCG
ATGCCTGTCTCCATCGGGAGTTCCTGGAATGCTGGGAAACCTCTCAATGATGGAGTAGTCCTATA
AGAACTAATTGGTCCAGGGGTATGGCGCCTTCAGAAAACCTTATTTCTAGACTGGCAGAGTGTGT
CTGTTTTCTTCTAGTATTTTATATGCTGTCAGAATGTCAAAAAGG
Right flanking sequence: Indices 272154 -- 272653
GTAGATATGTCAGTTAAAAACAAAATAAGGAATGAAGTCAAATCCTATAGTTATGTCAAGAAATC
AAAAAAGAAAATTTATAATGGCTAAAGATCCTTTACTATGGTTGGAGAATGTTGTTTCTGACTCA
GAAAATAAAAAAGTAATAGTGAATTTCTGGTTAAATTTGTACAATGATTTTAGTCAGAGTAATGG
GGGGAATATTGAGAGTGTCAAGAGCTTGACTAGTCAGTACAAAGATGAAGTAATTGAAATTTTGA
ATAAAAATAGATCTTCCAACCCAAGTGATGAGCATTTACGTGACATACAAACTCAAATAGAAAAA
TTGACAATGCAGTTTGACGAAGAATCAATTTATAAGTCAAATTCTTACTTAATAAAGATGCTAGC
AGAAAATGATGAGAAAGAACCAAGCATAAATGCAAAAGATTTTCTCATTAATGAGCTCATATCAG
ATGATGATAAGAGAATGATAGCAATGTTCGGTCATTATACACTTG
Found at i:277827 original size:30 final size:30
Alignment explanation
Indices: 277793--277909 Score: 204
Period size: 30 Copynumber: 4.0 Consensus size: 30
277783 ATTAGACGAT
277793 GAGATACAGATACCTAACGAGGAGGAGGAG
1 GAGATACAGATACCTAACGAGGAGGAGGAG
277823 GAGATACAGATACCTAAC---GAGGAGGAG
1 GAGATACAGATACCTAACGAGGAGGAGGAG
*
277850 GAGATACAGATACATAACGAGGAGGAGGAG
1 GAGATACAGATACCTAACGAGGAGGAGGAG
277880 GAGATACAGATACCTAACGAGGAGGAGGAG
1 GAGATACAGATACCTAACGAGGAGGAGGAG
277910 ATACATAACG
Statistics
Matches: 82, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
27 26 0.32
30 56 0.68
ACGTcount: A:0.41, C:0.13, G:0.36, T:0.10
Consensus pattern (30 bp):
GAGATACAGATACCTAACGAGGAGGAGGAG
Left flanking sequence: Indices 277293 -- 277792
AGCTGGAAGACCAAATCGTTCAAGGTTTCTTTCTTGCACCGAAAGCTTATAGTTACTACACCTTG
GAAGGAAGCAATGTCAAAAAGTACAAGGGACCAGCTAAAGATAAGGTCACTCCCGAATGGTTTGA
GAAACAGTACGCAGACCCATCGAGAAGGGTGCAGGTCAAGGTGGAAGCTAACTTCAGGATTGATT
GGGGAAGTTTGGAGATCAAAAAGAAAGAAATCTTATACAGTTTAGGTATTAAAGAGGGGTCTAAG
AGGATACCAGTATATGACAGTAATAAGAAATGGGTGGATACTGAGCCTATTGATATACATGACTT
GTCTAACCTAGACTACATTAGTAGAAAAGTGATTTCATCACTAAGTGATAGAGTACTCCATCTTG
AGAATGAGAGACTCAATGAGAAATTAGAAGAGAGGGATAGAGAGATTGCCAAGTTGAAATCACAG
ATAGAAGAAGAACCAACAGATGTCACTAACCCTACATTAGACGAT
Right flanking sequence: Indices 277910 -- 278409
ATACATAACGATAAAACTCATACTGACAATGAGAAAACTAAGACAGACAAGAAAACAAAGACAGA
CAAGAAAACAAAGACTGACGAGAAGAAACCTCCATGAAAAAAGTTAAAAATAGAAAGATGAAGGA
ACAAAACTGATCATGACTTGAGTTAGGCTAGAAGAACAATCTGTCTCATATGCGGTACAGTCTAG
TATCCATATCTTGAATAGGTGTCTGTGTGGAAGGTCAATTCCATCTTTCAGCAGAAGGAGATTCC
TATACCTGTACTCAAATAGTAAGTACTGAGAGTACGATAGTTATTAGCTGTTGAAGGAATAGACT
CAGGTCTTAGAGAAGTAGCTAGCTAGATGTCGCGTAAGAAGGTGTAAGATTGATTCGCGTCTTAG
GTTTCACCCTTCTCTTTCGCTTACTAGTCAAAGCATCGGATAGTGCTACCAACGAATGAGTCAGC
AGCCTGGTTACCTGTCCTTATGAAGGAAGGTGGGCATGAAAGTCT
Found at i:277881 original size:57 final size:57
Alignment explanation
Indices: 277793--277914 Score: 235
Period size: 57 Copynumber: 2.1 Consensus size: 57
277783 ATTAGACGAT
*
277793 GAGATACAGATACCTAACGAGGAGGAGGAGGAGATACAGATACCTAACGAGGAGGAG
1 GAGATACAGATACATAACGAGGAGGAGGAGGAGATACAGATACCTAACGAGGAGGAG
277850 GAGATACAGATACATAACGAGGAGGAGGAGGAGATACAGATACCTAACGAGGAGGAG
1 GAGATACAGATACATAACGAGGAGGAGGAGGAGATACAGATACCTAACGAGGAGGAG
277907 GAGATACA
1 GAGATACA
277915 TAACGATAAA
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 64 1.00
ACGTcount: A:0.42, C:0.13, G:0.34, T:0.11
Consensus pattern (57 bp):
GAGATACAGATACATAACGAGGAGGAGGAGGAGATACAGATACCTAACGAGGAGGAG
Left flanking sequence: Indices 277293 -- 277792
AGCTGGAAGACCAAATCGTTCAAGGTTTCTTTCTTGCACCGAAAGCTTATAGTTACTACACCTTG
GAAGGAAGCAATGTCAAAAAGTACAAGGGACCAGCTAAAGATAAGGTCACTCCCGAATGGTTTGA
GAAACAGTACGCAGACCCATCGAGAAGGGTGCAGGTCAAGGTGGAAGCTAACTTCAGGATTGATT
GGGGAAGTTTGGAGATCAAAAAGAAAGAAATCTTATACAGTTTAGGTATTAAAGAGGGGTCTAAG
AGGATACCAGTATATGACAGTAATAAGAAATGGGTGGATACTGAGCCTATTGATATACATGACTT
GTCTAACCTAGACTACATTAGTAGAAAAGTGATTTCATCACTAAGTGATAGAGTACTCCATCTTG
AGAATGAGAGACTCAATGAGAAATTAGAAGAGAGGGATAGAGAGATTGCCAAGTTGAAATCACAG
ATAGAAGAAGAACCAACAGATGTCACTAACCCTACATTAGACGAT
Right flanking sequence: Indices 277915 -- 278414
TAACGATAAAACTCATACTGACAATGAGAAAACTAAGACAGACAAGAAAACAAAGACAGACAAGA
AAACAAAGACTGACGAGAAGAAACCTCCATGAAAAAAGTTAAAAATAGAAAGATGAAGGAACAAA
ACTGATCATGACTTGAGTTAGGCTAGAAGAACAATCTGTCTCATATGCGGTACAGTCTAGTATCC
ATATCTTGAATAGGTGTCTGTGTGGAAGGTCAATTCCATCTTTCAGCAGAAGGAGATTCCTATAC
CTGTACTCAAATAGTAAGTACTGAGAGTACGATAGTTATTAGCTGTTGAAGGAATAGACTCAGGT
CTTAGAGAAGTAGCTAGCTAGATGTCGCGTAAGAAGGTGTAAGATTGATTCGCGTCTTAGGTTTC
ACCCTTCTCTTTCGCTTACTAGTCAAAGCATCGGATAGTGCTACCAACGAATGAGTCAGCAGCCT
GGTTACCTGTCCTTATGAAGGAAGGTGGGCATGAAAGTCTTTACG
Found at i:277998 original size:18 final size:18
Alignment explanation
Indices: 277941--277989 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
277931 ACTGACAATG
*
277941 AGAAAACTAAGACAGACA
1 AGAAAACAAAGACAGACA
277959 AGAAAACAAAGACAGACA
1 AGAAAACAAAGACAGACA
277977 AGAAAACAAAGAC
1 AGAAAACAAAGAC
277990 TGACGAGAAG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.65, C:0.16, G:0.16, T:0.02
Consensus pattern (18 bp):
AGAAAACAAAGACAGACA
Left flanking sequence: Indices 277441 -- 277940
ATCGAGAAGGGTGCAGGTCAAGGTGGAAGCTAACTTCAGGATTGATTGGGGAAGTTTGGAGATCA
AAAAGAAAGAAATCTTATACAGTTTAGGTATTAAAGAGGGGTCTAAGAGGATACCAGTATATGAC
AGTAATAAGAAATGGGTGGATACTGAGCCTATTGATATACATGACTTGTCTAACCTAGACTACAT
TAGTAGAAAAGTGATTTCATCACTAAGTGATAGAGTACTCCATCTTGAGAATGAGAGACTCAATG
AGAAATTAGAAGAGAGGGATAGAGAGATTGCCAAGTTGAAATCACAGATAGAAGAAGAACCAACA
GATGTCACTAACCCTACATTAGACGATGAGATACAGATACCTAACGAGGAGGAGGAGGAGATACA
GATACCTAACGAGGAGGAGGAGATACAGATACATAACGAGGAGGAGGAGGAGATACAGATACCTA
ACGAGGAGGAGGAGATACATAACGATAAAACTCATACTGACAATG
Right flanking sequence: Indices 277990 -- 278489
TGACGAGAAGAAACCTCCATGAAAAAAGTTAAAAATAGAAAGATGAAGGAACAAAACTGATCATG
ACTTGAGTTAGGCTAGAAGAACAATCTGTCTCATATGCGGTACAGTCTAGTATCCATATCTTGAA
TAGGTGTCTGTGTGGAAGGTCAATTCCATCTTTCAGCAGAAGGAGATTCCTATACCTGTACTCAA
ATAGTAAGTACTGAGAGTACGATAGTTATTAGCTGTTGAAGGAATAGACTCAGGTCTTAGAGAAG
TAGCTAGCTAGATGTCGCGTAAGAAGGTGTAAGATTGATTCGCGTCTTAGGTTTCACCCTTCTCT
TTCGCTTACTAGTCAAAGCATCGGATAGTGCTACCAACGAATGAGTCAGCAGCCTGGTTACCTGT
CCTTATGAAGGAAGGTGGGCATGAAAGTCTTTACGTAAGACCATCAAATTAGTGATTAGGAAGGT
ATTTAAGGAATGAACTTCTATTACTATTACAGGGATTCTTTTATT
Found at i:278600 original size:38 final size:38
Alignment explanation
Indices: 278558--278634 Score: 145
Period size: 38 Copynumber: 2.0 Consensus size: 38
278548 AGCTATCAAC
*
278558 TAACCTGTAAGAAGAGCCTGGAAGAGACCTCTTTCTTG
1 TAACCTGTAAGAAGAGCCAGGAAGAGACCTCTTTCTTG
278596 TAACCTGTAAGAAGAGCCAGGAAGAGACCTCTTTCTTG
1 TAACCTGTAAGAAGAGCCAGGAAGAGACCTCTTTCTTG
278634 T
1 T
278635 TCTGTTGTTA
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (38 bp):
TAACCTGTAAGAAGAGCCAGGAAGAGACCTCTTTCTTG
Left flanking sequence: Indices 278058 -- 278557
TGAGTTAGGCTAGAAGAACAATCTGTCTCATATGCGGTACAGTCTAGTATCCATATCTTGAATAG
GTGTCTGTGTGGAAGGTCAATTCCATCTTTCAGCAGAAGGAGATTCCTATACCTGTACTCAAATA
GTAAGTACTGAGAGTACGATAGTTATTAGCTGTTGAAGGAATAGACTCAGGTCTTAGAGAAGTAG
CTAGCTAGATGTCGCGTAAGAAGGTGTAAGATTGATTCGCGTCTTAGGTTTCACCCTTCTCTTTC
GCTTACTAGTCAAAGCATCGGATAGTGCTACCAACGAATGAGTCAGCAGCCTGGTTACCTGTCCT
TATGAAGGAAGGTGGGCATGAAAGTCTTTACGTAAGACCATCAAATTAGTGATTAGGAAGGTATT
TAAGGAATGAACTTCTATTACTATTACAGGGATTCTTTTATTAAGACCTTTCGGATAGATAGCCC
TATTGAATGAAGGTTGAAGACCAACCCGCATGGAAAGCTATCAAC
Right flanking sequence: Indices 278635 -- 279134
TCTGTTGTTAGAGCCAGGAAGAGAGCTCATTCTTGTTCTGTTGTTCGAGGAATTGCTAGAAGCAT
GCTAGAAAAACCAATTCCTTTCTTCAAGTGCTTTCCTTAGATCTTAAGAGAAGTGATTCCTATTC
CCAGAATCATGGCAAGTGAGGTATGGTTAGCATCATTGGCAATAAGGAATTCTTCTATGACTCAT
AGCCCACCTCACCCTGAGATCTCCGCTATTGATAAGAGAGAGCCTGGTCTGCATGCTACTGATAA
GACAATTGCTGTGGGAGTTGAAGGTCAGGATCGAAGGCATATGCTGGTATGCGGGGGTCACGGAT
TTAGTTCAGGCCTGCCTCGGAGTGCGGTGTGAGAGTGTTATGCTGGAACTTTTCCAGGGATGAAT
CGATCAGGCTATTAAAGAAAGGAAAGAAAGTTGTAACCTAAAATACGGAGTATTGGCAATAGGCA
GGTCACAGGCAGATGTATGCAGCCTAAGATCAGATTGCGGGCCAG
Found at i:278655 original size:36 final size:36
Alignment explanation
Indices: 278570--278679 Score: 132
Period size: 36 Copynumber: 3.0 Consensus size: 36
278560 ACCTGTAAGA
* * * *
278570 AGAGCCTGGAAGAGACCTCTTTCTTGTAACCTGTAAG-A
1 AGAGCCAGGAAGAGACCTCTTTCTTGT--TCTGT-TGTT
278608 AGAGCCAGGAAGAGACCTCTTTCTTGTTCTGTTGTT
1 AGAGCCAGGAAGAGACCTCTTTCTTGTTCTGTTGTT
* *
278644 AGAGCCAGGAAGAGAGCTCATTCTTGTTCTGTTGTT
1 AGAGCCAGGAAGAGACCTCTTTCTTGTTCTGTTGTT
278680 CGAGGAATTG
Statistics
Matches: 65, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
35 1 0.02
36 38 0.58
38 26 0.40
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (36 bp):
AGAGCCAGGAAGAGACCTCTTTCTTGTTCTGTTGTT
Left flanking sequence: Indices 278070 -- 278569
GAAGAACAATCTGTCTCATATGCGGTACAGTCTAGTATCCATATCTTGAATAGGTGTCTGTGTGG
AAGGTCAATTCCATCTTTCAGCAGAAGGAGATTCCTATACCTGTACTCAAATAGTAAGTACTGAG
AGTACGATAGTTATTAGCTGTTGAAGGAATAGACTCAGGTCTTAGAGAAGTAGCTAGCTAGATGT
CGCGTAAGAAGGTGTAAGATTGATTCGCGTCTTAGGTTTCACCCTTCTCTTTCGCTTACTAGTCA
AAGCATCGGATAGTGCTACCAACGAATGAGTCAGCAGCCTGGTTACCTGTCCTTATGAAGGAAGG
TGGGCATGAAAGTCTTTACGTAAGACCATCAAATTAGTGATTAGGAAGGTATTTAAGGAATGAAC
TTCTATTACTATTACAGGGATTCTTTTATTAAGACCTTTCGGATAGATAGCCCTATTGAATGAAG
GTTGAAGACCAACCCGCATGGAAAGCTATCAACTAACCTGTAAGA
Right flanking sequence: Indices 278680 -- 279179
CGAGGAATTGCTAGAAGCATGCTAGAAAAACCAATTCCTTTCTTCAAGTGCTTTCCTTAGATCTT
AAGAGAAGTGATTCCTATTCCCAGAATCATGGCAAGTGAGGTATGGTTAGCATCATTGGCAATAA
GGAATTCTTCTATGACTCATAGCCCACCTCACCCTGAGATCTCCGCTATTGATAAGAGAGAGCCT
GGTCTGCATGCTACTGATAAGACAATTGCTGTGGGAGTTGAAGGTCAGGATCGAAGGCATATGCT
GGTATGCGGGGGTCACGGATTTAGTTCAGGCCTGCCTCGGAGTGCGGTGTGAGAGTGTTATGCTG
GAACTTTTCCAGGGATGAATCGATCAGGCTATTAAAGAAAGGAAAGAAAGTTGTAACCTAAAATA
CGGAGTATTGGCAATAGGCAGGTCACAGGCAGATGTATGCAGCCTAAGATCAGATTGCGGGCCAG
CACTCCAGCGATCAGTGAACAGCAGTCACCACTCAAGCCTGGCTA
Found at i:285844 original size:21 final size:21
Alignment explanation
Indices: 285818--285879 Score: 124
Period size: 21 Copynumber: 3.0 Consensus size: 21
285808 ACATATCTAC
285818 TTTCAGCTAGCATCTTATAGA
1 TTTCAGCTAGCATCTTATAGA
285839 TTTCAGCTAGCATCTTATAGA
1 TTTCAGCTAGCATCTTATAGA
285860 TTTCAGCTAGCATCTTATAG
1 TTTCAGCTAGCATCTTATAG
285880 CCTTTTTGAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 41 1.00
ACGTcount: A:0.27, C:0.19, G:0.15, T:0.39
Consensus pattern (21 bp):
TTTCAGCTAGCATCTTATAGA
Left flanking sequence: Indices 285318 -- 285817
ATATAGTTGAAATGATCAGGTAAAAAGCGGTAACACAGACCCATTAGATCTTCATCATTACAATT
TTCTGGTTGATGTACATTATTTTCTTGTTGTTGCTTAATAGATGACTTTTGAATAATAGGAGAAT
GTGGAGTATTCCGTATGTATTTATCAAAGATACTATGACGATTTCTATGAGATGACAAAGGAGGA
AGACTAAATGATGACATAGGTAAAGAACTTCTACTACTAGATAACATTGGTAATGAAGTTAGACT
CCCAAATAAGTTATTATTCTGACTTCGACGATAAGACAAGGGTTGCGCACTACTACTTCTAGTGT
TCTTCAACGAAGATTCATAATGATCATGACAAATGGGTAATAACCGTAATCTATCAATATCAGGC
ACTGTTCTATTAGTAGTAAATAATGGTTTCACGGTAATAGTTTATTTTTTATTTTTCAAGCAATA
ACTATAAACTTCATTCCTTATTTTGTTTTTAACTGACATATCTAC
Right flanking sequence: Indices 285880 -- 286379
CCTTTTTGACATTCTGACAGCATATAAAATACTAGAAGAAAACAGACACACTCTGCCAGTCTAGA
AATAAGGTTTTCTGAAGGCGCCATACCCCTGGACCAATTAGTTCTTATAGGACTACTCCATCATT
GAGAGGTTTCCCAGCATTCCAGGAACTCCCGATGGAGACAGGCATCGAATACCAGTTTTGCAAAT
ATGATAATTTGGTAGAAGCTGAATATTCAAGGATTTTCTATGGAGAAGTAGTGGTTCATGGATGA
ATTTCAGGCCACACCCATGTGACTTGCTTCCGTTTACATGATAAGAGACCATGTCCAATAGTGCC
ATTACCTTGTCATTATAAGCTTGACTGATCCCTCTAGCAAAAATGACTAGAGACAGGCGCTGTTA
TTCAAGAAGCAGAATACAAATAGACTTAGAAATCTATTTATATCCTAAAGGGTCTCACCCTCTAT
TGAGTACTTTGCTTGCTAGCTAGATTTGGTTGTTGACCAACTACA
Found at i:287559 original size:27 final size:27
Alignment explanation
Indices: 287529--287581 Score: 97
Period size: 27 Copynumber: 2.0 Consensus size: 27
287519 GATTGACAAC
287529 TTTTCTTTCCTAGCAGCTAATGCTATT
1 TTTTCTTTCCTAGCAGCTAATGCTATT
*
287556 TTTTCTTTCCTAGCAGTTAATGCTAT
1 TTTTCTTTCCTAGCAGCTAATGCTAT
287582 AAAGAAAGGA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.19, C:0.21, G:0.11, T:0.49
Consensus pattern (27 bp):
TTTTCTTTCCTAGCAGCTAATGCTATT
Left flanking sequence: Indices 287029 -- 287528
GAATACATACGACTAAAAGAGAGAACAACAACGGACTAACTCGAATCTCGTAGATGACGATGAAG
CGGGACAATCTCGTAGATGATGAACTCTGTTTAGCCCTCACTGGTGAGAAATAGCTCTCTCTACT
GTTAAGGAGATGCAGGCAACTATCCCGACAGCTCTTGTTCCACTTTCACTCTTTGGAGAATCACT
TCGCTACACTCCGACTTAAAGAAGGCTTGATGAACGCCCTATCTTATATAAAATGCTAGCTAGGG
TGGTTAGCCGACTGATAGCCCTGTACTTTGCCAGGCAGGAAAGCCTTTTCAAGCACCCCTTTCCC
TTTGCCTATAGACCTATTATTTAGCCTTTTTGCAAGGTCAATCTCCCTATAACTCAACCTATTCA
ATAGGGCATTAGCGAGGGTTTTAAGCTACTTTTTTTTCTTTCCTAGCTGTTACTATAAAGATATT
ATGAAAGCTATTTCTTATTTTAGATTGACAACTATGATTGACAAC
Right flanking sequence: Indices 287582 -- 288081
AAAGAAAGGAAGCTACCTAGCCTAACCTCAAATCCTAGCATTCATACTTACCTAGCATTCATGCC
TTCCCCTTCATTTCTGATTTCAGATATCATTTCTAATTTCAGATTGACAACAGCCCTAACAGCAG
ATGAAGACTAACTATAGGCCTAACTATTAGACCTATACAGACTTATAGCATGCCTTCAAGACAAA
GAAGAGGGGAATCATTCGCGATACCCACCCGGGCATCGCTCACTGCGAGGACAGAGAGACCTCCT
AAGCCTTGGTCTTAGAATACAAGCCTCCCTCCGGTTGGCTAAAAACGAATGCTTTCAGTATGCCG
CGAGTGGCTTTAAGAAGGTGTTATGCTGGACACATTAAGGACTAAATTCATCCAGGTCCTGGTAG
TTACACGGGAAAGCTTTCAGGCTTACTGCTCTACTGGTTTCAAGCAAGACCTAGCCTCTCCAGCT
TATTCATTAGGGCGAAGAGGACTAACTAGCTGTTGACAGGAGATG
Found at i:287678 original size:19 final size:19
Alignment explanation
Indices: 287654--287690 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
287644 GCCTTCCCCT
*
287654 TCATTTCTGATTTCAGATA
1 TCATTTCTAATTTCAGATA
287673 TCATTTCTAATTTCAGAT
1 TCATTTCTAATTTCAGAT
287691 TGACAACAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.27, C:0.16, G:0.08, T:0.49
Consensus pattern (19 bp):
TCATTTCTAATTTCAGATA
Left flanking sequence: Indices 287154 -- 287653
CTACTGTTAAGGAGATGCAGGCAACTATCCCGACAGCTCTTGTTCCACTTTCACTCTTTGGAGAA
TCACTTCGCTACACTCCGACTTAAAGAAGGCTTGATGAACGCCCTATCTTATATAAAATGCTAGC
TAGGGTGGTTAGCCGACTGATAGCCCTGTACTTTGCCAGGCAGGAAAGCCTTTTCAAGCACCCCT
TTCCCTTTGCCTATAGACCTATTATTTAGCCTTTTTGCAAGGTCAATCTCCCTATAACTCAACCT
ATTCAATAGGGCATTAGCGAGGGTTTTAAGCTACTTTTTTTTCTTTCCTAGCTGTTACTATAAAG
ATATTATGAAAGCTATTTCTTATTTTAGATTGACAACTATGATTGACAACTTTTCTTTCCTAGCA
GCTAATGCTATTTTTTCTTTCCTAGCAGTTAATGCTATAAAGAAAGGAAGCTACCTAGCCTAACC
TCAAATCCTAGCATTCATACTTACCTAGCATTCATGCCTTCCCCT
Right flanking sequence: Indices 287691 -- 288190
TGACAACAGCCCTAACAGCAGATGAAGACTAACTATAGGCCTAACTATTAGACCTATACAGACTT
ATAGCATGCCTTCAAGACAAAGAAGAGGGGAATCATTCGCGATACCCACCCGGGCATCGCTCACT
GCGAGGACAGAGAGACCTCCTAAGCCTTGGTCTTAGAATACAAGCCTCCCTCCGGTTGGCTAAAA
ACGAATGCTTTCAGTATGCCGCGAGTGGCTTTAAGAAGGTGTTATGCTGGACACATTAAGGACTA
AATTCATCCAGGTCCTGGTAGTTACACGGGAAAGCTTTCAGGCTTACTGCTCTACTGGTTTCAAG
CAAGACCTAGCCTCTCCAGCTTATTCATTAGGGCGAAGAGGACTAACTAGCTGTTGACAGGAGAT
GCAGGCAAGGAAGTCACTAGAGAGGTGAAAAAGACATACATAATGTAAAGACATTCCTGGTAGTT
CTTGACTGACTGCTATTAGTATGAATGATCTTTCTTTATCTCCAC
Found at i:293216 original size:25 final size:25
Alignment explanation
Indices: 293167--293217 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
293157 AGTTGATATC
* *
293167 AAGATGAAAGGGAAAGACAATAAGA
1 AAGATGAAAGAGAAAGACAAGAAGA
* *
293192 AAGATGAAAGATAAAGACTAGAAGA
1 AAGATGAAAGAGAAAGACAAGAAGA
293217 A
1 A
293218 GGGGCTTTCT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.61, C:0.04, G:0.25, T:0.10
Consensus pattern (25 bp):
AAGATGAAAGAGAAAGACAAGAAGA
Left flanking sequence: Indices 292667 -- 293166
GGTTACACGCCTGGTCCCGAAACCACATCTGGCAGATGCGATTCCTGGATGTAGTTGGATGTGAT
TATCGGTGAAAGCATAGAAGGATCTCCTGTCAATAGTCACAGGGAATTACACTATAGCTTTAGGA
CCTGACCTGTAATAGGTGGTGTAAATGTCCTTATTTATTATAGGATGAAGATGATTCACTCACCA
AGAAGACCGTCTACTCGAGCAGTAAGAGTTGATTCAATTGCCAACAGAAGACCGTCTGCGACAAC
AAGACCATCAGCAGCAGATGATTGAACAGCGGATGCGTTGAGGAGATCAGCCCTAATTGAAGACC
CGATACTCTCAACCAAGAACTTCTATATATAACACCAACCGCGGAACAGGAGCATGCGTTACACA
CGTCGTCAGCTAGCGGACGCAAGCAGAGTGGGACCTTCTCCGATAGTATCTTTCATCATAATATT
GAAAGCTTCCCCGCCCGATGCTTTGTTAATGTCAGAGTTGATATC
Right flanking sequence: Indices 293218 -- 293717
GGGGCTTTCTTAGAAGAATTCCCACTTGGACTGGTAGTGAGAACCCGATCTCCAGAAGCTAATTG
GCAAGGTTCGACTTGACCGGAGCGGATCGCAACTCAAGCACAACTAGAGTTCACTCACCCACGTG
CCCAATACTTGATGTGATGACTCTAGCCCCATGTCGGCTTCATTGACGAGTCATGATGCTGCGAT
ATAGGATCAAAATCGACTTTCATTTCACTTAACTCATCAAAGCAAGGAGTGGCTACTAGATAGAC
AATTAGTTCCGAGACTAAGAGATTGGGCTATCGGCCGGTATCAGTTGAAGTCAACAAAGAAGGAA
AGCCTTCCCCCAATCCAACATTTTCAGGTGAAAAGAAGATAGATGACTGAGAGTCACGGGATTTT
GAAAGCGCCGCATCTAGCTCAGCAGTTTCTTCAAAAGAGATGACGGATACAGAGCGGTTACCACT
TGTAGGCTCATTCACCAACTAGGCCATGAGTTTGCTTTAACGAGT
Found at i:303120 original size:18 final size:18
Alignment explanation
Indices: 303080--303122 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
303070 ACCGCCCTGC
303080 CATAGTCGCGAGTCTGTTT
1 CATAGTCGCGAG-CTGTTT
303099 -ATAGTCGCGA-CTGTTGT
1 CATAGTCGCGAGCTGTT-T
303116 CATAGTC
1 CATAGTC
303123 AACAAGGTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
16 5 0.23
17 1 0.05
18 16 0.73
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.35
Consensus pattern (18 bp):
CATAGTCGCGAGCTGTTT
Left flanking sequence: Indices 302580 -- 303079
CGTCCGATGGGTACACGAAAGTGACGAAGTTGCTTTGACTACAGAACCATGCCTGTCTGTTGGAG
CGAATTGGATGATCGGGCCGAGGGCTGCCCCCTCTTCCCCTCACTCTCCTTTCCCTAATATGAAC
CTTGAGTCATCAAAGCCTTTCTGACTCGGCCTGGCCCGGTCGCCCTACGCGACTGGCGCTTCAAA
AGGCGAAACTCTCGTCGTAGTTTGGCGACCTAAGGGGCGGACACTTTTTGTTATCTAAAGGCGAA
GACTCTGAAGTGGGCGAACACTCGGCCCAGCGGGCGAACATGCCGGGCTCCGGCTCCGCGCACCT
GCTGACACCTTTCGAAGCACTTTCTAGTGTGCGCTTTAGTTTTCGAATGTCTCGTTCAGCGTCAC
GAGTCTACAAGCCTTTCTCATTTCAGTGCTCGCCCTTTGAATCTTCAGTAGGGGCCTTTAGTCTT
TTGATTAGAGTAGGGGTCGCGAGAGAGCAGAGCGTACCGCCCTGC
Right flanking sequence: Indices 303123 -- 303622
AACAAGGTTGAAACTTCCAGGAAAAAACTTCGAATTGGGAGGGCGATCCTCCCGGTGAACTGACC
GTACCCCAAACCGACACAGGTGAACAAGTAGAGTATACTAGGGCGCTTGAGAGAACCATGTCGAA
GGAACTCGGCAAAATGACCCCGTAACTTCGGGAGAAGGGGTGCTCTCCTATCTTTTGATTAGGAA
AGCGGCACATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACAC
GATGTATAGAGTCTGACACCTGCCCGGTGCTGGAAAGTCGGAAGGAGAAGTGTTATAAGCTTTGA
ATGGAAGCCCCGGTAAACGGCGGCAGTAACTCTAACTGTCCTAAGGTAGCGAAATTCCTTGTCGC
ATAAGTAGCGACCTGCACGAATGGTGTAACGACTGCCCCGCTGTCTCCGACATGGACCCGGTGAA
ATTGAATTCTCCGTGAAGATGCGGAGTACCAACGGCTAGACGGTA
Found at i:304760 original size:21 final size:21
Alignment explanation
Indices: 304734--304777 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
304724 ATATCTAGTT
304734 TGAATTCTAAGACCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
*
304755 TGAATTCTAAGGCCCTCTTTA
1 TGAATTCTAAGACCCTCTTTA
304776 TG
1 TG
304778 CTCTCAAAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.25, C:0.23, G:0.14, T:0.39
Consensus pattern (21 bp):
TGAATTCTAAGACCCTCTTTA
Left flanking sequence: Indices 304234 -- 304733
CCTATGGTGTACCGGTTGTTATGCCAATAGCAGCGCCGGGCAGCTAAGTTGGTATGGAAGAACTG
CTGCGCCGCGGGAAATCCTTCTCTATACAAGTTCTCGGACGAGGTTTTTGAACAGAACTTCGATA
GGCGAGAGGTGTAAGCACCGCGAGGTGTGAAGCGATCTCGTACTAAACGAAAGAACTTTCACTTT
CCATAACCAAAATGAAAGAAAGTCAACCTATTCCTGCAATTGCGGTCAGTCTCGCTACCTCTTTA
GTTGCCGCCCCCTACTTGCTCATTCGCAATGACTACCACAAGAAAGTAGCCCCTATCTCTAAAGG
GGCTTATGCACTCCACGACTTTCTTATGTTATGGCGAAGACTGAATTTAGCTTCCAACCCTAGTC
AGCAAGCTTCAAAAGTCCTTTCTCCTTTCTTTTCCGAAACTCAAATAGAAAACTCTCCCCATGGG
ACCGGGGTTTGAGGTTGTCATACCACTTTCATCCGATATCTAGTT
Right flanking sequence: Indices 304778 -- 305277
CTCTCAAAGACCGGCTTTTACAGAACTGAGATTCCATAGGCCGAAACGAAGCCCTTTAAAGGTAG
AATTAGGAGTCGAAGCCATGCATTTAGCCCGATTGCTATTCGCCCTTTTTAGCACTAGACTGACA
TTCTCATTTCGCTTGTTCAGTTCAACGAAAGCCGGTACTAATCAAGCACAGTTTAGCCCTATGAT
TGAATTGCGATAGTTGGATTCCCTCTTCCTATAGCTATGACTGGCAACCCCTATAAGTCAGTTTT
TACTCCCTCTTTTAAGGTCGAGCCTATAGAAAAGTAAATATGGTCTAGCTAGTTATCACTTCTCC
CCCTATAGTTATAGCAGTACTGGGGAATTCCTCTATCTTCTTTGAATGAGGAGAGAGAGTACTCA
TTCCTCTCCCTCTGGTCGAGTGGCTTCGCTCCTATAAGCTAGTTCTCACTTCCGAGCTCTAACTC
CTTACTTTCTTTCCCACCGTAGAACTCCAATCGAAAGGGGAATCT
Found at i:306383 original size:25 final size:25
Alignment explanation
Indices: 306355--306404 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
306345 AAATTGGGGT
306355 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
306380 AGCTCAGGAACTATAGAATCTCTCA
1 AGCTCAGGAACTATAGAATCTCTCA
306405 GGAGTTGAAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.24, G:0.16, T:0.24
Consensus pattern (25 bp):
AGCTCAGGAACTATAGAATCTCTCA
Left flanking sequence: Indices 305855 -- 306354
GTGCCATTTCTTCTCTTGGAGGCAGGGCAATAGATTCATCTTGTCCTTGGCTTGTGAAGGGAATG
AGGTAGGGTAGCCAAAGCCCCCAACAAAGGGATAGGGCAATCCTTCCCAAGTAATGCATAAGCAA
GATCAGGACTAGAGGGGTGTGAAGAGTAGGGGGATCTCTTGTGCAAAGCAAAGACAGGTACGTGC
TAGCAAAGAAGGGAAGTGGCAAGGGATTTCAAAGAAGAAGAAAGAAGAGAAAGTTAGTACACAGA
GTCTTCCCCTGCCTAATTGATCTAATGATAAAGAAGTAGGCTAAGTAAAATAGAAAGTGTGTGTA
AACAATAAGTAATGACTTGCTTTGTGAGAGCTCAGTTTCTAAGACGAAGGCTAAGAATTCTCTAC
TAGAGGGATTGAAAAGATCGAGGGTAATTTCTGAGTCTTGATGGACCTTTCTTATTATAGGCCAA
AGGAATAGCTAAGGACTTCTTCCCTCATTCTCATCAAATTGGGGT
Right flanking sequence: Indices 306405 -- 306904
GGAGTTGAATAAACTCTTTTATGCTAGTGGAATTGGGAAGCATGATAAGTCCGTACTCCACATTC
TAGCTTCATCCTTGGTTTTCAAAGAAAGGAAACTTCAAAGACTGACAGAAGAGAAAGGTAAGATA
ATCCTTTCTGGCCTTAACTGAAAGCGGGGGAGGCCCAGGTCTACATACAGGTCTTGGATCAATAT
CATCCTCCAATTGCTAGGGAAAGAAGATCGGGATTAGTCTCCTTGCCATTGCTACTGTCTTTGAA
AGTCTAGCTATCCTCTCCTTGTCATGCTTAGTTATTCTGCATTGCTCCTTCTTCTGATCTTGCTT
TCTTGCCTTATAGAACTGACCTTTGTCCCCTCCTTCCGGTTTTAACTCACTTAAAGTCCATTCCT
TGCTCTTGCCTAGTTCTAGGCTTAGACGAAAGAGCTCATTCATAGATTCCATCTTTCTAGCATTT
CATGTCTTTCTTCCTTCAACTCTAATTCATGCCATGAATTGTTAA
Done.