Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_058846
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 293897
ACGTcount: A:0.28, C:0.22, G:0.23, T:0.27
Found at i:30248 original size:12 final size:12
Alignment explanation
Indices: 30226--30255 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
30216 CGCCTTTCTA
30226 ATATA-AGAAGT
1 ATATATAGAAGT
30237 ATATATAGAAGT
1 ATATATAGAAGT
30249 ATATATA
1 ATATATA
30256 ATAAGCCGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.28
12 13 0.72
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.33
Consensus pattern (12 bp):
ATATATAGAAGT
Left flanking sequence: Indices 29726 -- 30225
TGCTACTAGGGGAATGCCCCTTAGATTAGTTAGAACTGGGAAAAGTAGTTCTGGCCAAGTCTTTC
TACCAGCTCCTTATTCAAGAAAGTCCCCACTCGCTGATCTCTGCGGATCTATTGACGGAGGGGAT
AACAAAAACGTAAAGGGGCCTGGCTTGGTTCACCCTCTCTGGTACATCCTAGGACATTAGAGTGA
GATGTCGGCCATGAAATCCATCACTATACCGAGCAGATCACGGGCATTCACATCTCGGTCAAAGG
GAACTGTGCGCGATTCTCTCGTGAATCGCCTTCAGCAAGGTATGGCACTCAGGGTCTGAACCCGG
GGATAAATCTTTCTTCATAGATACAAGACATTCGTTGCTGATCTAAAAAAGATCTTCTCCCGTGG
GCGTTAGCGGACGTTTTTCATTCTTCACCCGGTCCTTAGTAGCGTTGACAAAGGTAACCTCCGGT
TTACTTTAGAAACGCGCTAAACAGGCCTATAGGTTCGCCTTTCTA
Right flanking sequence: Indices 30256 -- 30755
ATAAGCCGGATCGTCTGAAGCATGAACAGAATAGCCTTTGTTCCGAAGGCCTAGCGAGTTAAGCG
AGTTCCTTCTTTTTTTTCAAAGGCGGTCCTTTTCTTTCCCCGGACCGATGACTCGCTTGTTCAGT
ACTGCTAACTATTATAGGGGGATGTCGTCCCCTCGGGACTACCAGTCAGTAGCTTCGGTTGTTGA
ATCTCGTGCAAGTTAGGTTGTGGTTGTATTGGCTGCAAGCGGAACGTAGGCGCTTTAGGTGTGTA
TTGACCATGCACTCTCGCGTCGTGTAATGTCGTATGTATTGTATGATAGAGGTGGTGCGGTGATT
GACCTCAATGCTAATGGTTATCCCCAAGGTTCAACGAATGGAGCTATGATCGTACCCAGATAGAG
ATGGTGGTCTTCCTCTGATGTCTCCAAGTCGGCCATAATAGAATAGATAGGCGAAGCAGCCAATA
GCAGTCTGTTCTCGCCTATCGATAGATAGCAGGTTGCTTCCAAGC
Found at i:67874 original size:12 final size:12
Alignment explanation
Indices: 67850--67926 Score: 102
Period size: 12 Copynumber: 6.5 Consensus size: 12
67840 TTGCCCGGTA
*
67850 CCTCCCCTCCAT
1 CCTCCCCTTCAT
*
67862 CCTACCCTTCAT
1 CCTCCCCTTCAT
67874 CCTCCCCTTCAT
1 CCTCCCCTTCAT
*
67886 CTTCCCCTT-AT
1 CCTCCCCTTCAT
67897 CCTCCCCTTCAT
1 CCTCCCCTTCAT
*
67909 CTTCCCCTTCAT
1 CCTCCCCTTCAT
*
67921 CTTCCC
1 CCTCCC
67927 GAGCGCGGAT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
11 10 0.17
12 48 0.83
ACGTcount: A:0.09, C:0.56, G:0.00, T:0.35
Consensus pattern (12 bp):
CCTCCCCTTCAT
Left flanking sequence: Indices 67350 -- 67849
GGTCAATGCAAACACTCTGCCTGAAGGATTCTGTTGATTCTGCTGACCTCCACTGCCACTTCCTC
CACCACCAGTGTTACGCGACACTGTACAATCCTTTGCCCTATGTGCCATACTACCACACAAGAAA
CATGCTCCAGTCTGTCTATAACAAGGCTTCCCCGGATGATGTCCACCACATGTAGCACAAGGAGC
AACTGGAATCATATTAGGATTGCCCCCATACACTGAATAACGGCCTTGCCCCTGTTGACGATTCT
GCCACTGTCTAGGCTGCTGCTGCTGAAACTGCTGATTCTGCCTCTGACCTCCATACTGATTTCGA
CCATAAGCTGACTGACCTCCCCTATTCTGATTCTGTCCACGCCACTGTCCCTGCTGACCTCCATA
CCACTGTCTACCCTGTGCTGAAATCTGCTGGTCATCTCTTCCCCTCATCGCATGCGCTTTGCTTC
GACCAGGGTGCTTTTAAGCTGGCTTCTTTCTTTGATTGCCCGGTA
Right flanking sequence: Indices 67927 -- 68426
GAGCGCGGATTCTTGATTTGTTGTATCGCCGTGCTCGATATGACCACACACCGCATTTATATAGG
TATTGTATGAATGAATTATTTCATTTCTCTTCTTAGTCCAAGTATTCTTTTTACCCCTCAGATCT
GCTGGAATGCAATTATTTAAGAGAGTTTTGAGTTCACCAGAAGGTATAACTCTTTCGAATGATGG
ATATTTTTTGGGTTTTGATAAATTCATATAGATGAACTCGTTAATCACTACAAGAGGTGGACCCA
TTTCCATATAGGCACGAGCATACAAAGAAGGTAATTTCTTGCTACATGACATAAAAATACACTAC
TTTGCGCGTCTACAGGCACTTATTTAAATAAGTTGACGGACTCGCCGTCTAGTGATACTTCTGAT
CAAAGGCAAGCTGCACAATTAGGGCTCCCTGCTCCGCCCGCAGCGCTTGCAGCCTCTCCTCCAAA
CCCTCTATGCGCTCTCTGGCAGCGCGAATGCGTGCTTCTTTCACC
Found at i:67905 original size:35 final size:35
Alignment explanation
Indices: 67860--67926 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
67850 CCTCCCCTCC
67860 ATCCTACCCTTCATCCTCCCCTTCATCTTCCCCTT
1 ATCCTACCCTTCATCCTCCCCTTCATCTTCCCCTT
* *
67895 ATCCTCCCCTTCATCTTCCCCTTCATCTTCCC
1 ATCCTACCCTTCATCCTCCCCTTCATCTTCCC
67927 GAGCGCGGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.10, C:0.52, G:0.00, T:0.37
Consensus pattern (35 bp):
ATCCTACCCTTCATCCTCCCCTTCATCTTCCCCTT
Left flanking sequence: Indices 67360 -- 67859
AACACTCTGCCTGAAGGATTCTGTTGATTCTGCTGACCTCCACTGCCACTTCCTCCACCACCAGT
GTTACGCGACACTGTACAATCCTTTGCCCTATGTGCCATACTACCACACAAGAAACATGCTCCAG
TCTGTCTATAACAAGGCTTCCCCGGATGATGTCCACCACATGTAGCACAAGGAGCAACTGGAATC
ATATTAGGATTGCCCCCATACACTGAATAACGGCCTTGCCCCTGTTGACGATTCTGCCACTGTCT
AGGCTGCTGCTGCTGAAACTGCTGATTCTGCCTCTGACCTCCATACTGATTTCGACCATAAGCTG
ACTGACCTCCCCTATTCTGATTCTGTCCACGCCACTGTCCCTGCTGACCTCCATACCACTGTCTA
CCCTGTGCTGAAATCTGCTGGTCATCTCTTCCCCTCATCGCATGCGCTTTGCTTCGACCAGGGTG
CTTTTAAGCTGGCTTCTTTCTTTGATTGCCCGGTACCTCCCCTCC
Right flanking sequence: Indices 67927 -- 68426
GAGCGCGGATTCTTGATTTGTTGTATCGCCGTGCTCGATATGACCACACACCGCATTTATATAGG
TATTGTATGAATGAATTATTTCATTTCTCTTCTTAGTCCAAGTATTCTTTTTACCCCTCAGATCT
GCTGGAATGCAATTATTTAAGAGAGTTTTGAGTTCACCAGAAGGTATAACTCTTTCGAATGATGG
ATATTTTTTGGGTTTTGATAAATTCATATAGATGAACTCGTTAATCACTACAAGAGGTGGACCCA
TTTCCATATAGGCACGAGCATACAAAGAAGGTAATTTCTTGCTACATGACATAAAAATACACTAC
TTTGCGCGTCTACAGGCACTTATTTAAATAAGTTGACGGACTCGCCGTCTAGTGATACTTCTGAT
CAAAGGCAAGCTGCACAATTAGGGCTCCCTGCTCCGCCCGCAGCGCTTGCAGCCTCTCCTCCAAA
CCCTCTATGCGCTCTCTGGCAGCGCGAATGCGTGCTTCTTTCACC
Found at i:89238 original size:7 final size:7
Alignment explanation
Indices: 89226--89261 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
89216 CAGAGCCCTT
89226 GATTAAG
1 GATTAAG
89233 GATTAAG
1 GATTAAG
89240 GATTAAG
1 GATTAAG
89247 GATTAAG
1 GATTAAG
89254 GATTAAG
1 GATTAAG
89261 G
1 G
89262 CCTTTATAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.42, C:0.00, G:0.31, T:0.28
Consensus pattern (7 bp):
GATTAAG
Left flanking sequence: Indices 88726 -- 89225
GCAAGTGAGTATACCTATATACGGTATACGAGCGATAGAAGACAAAGAAAAGAAATACTAAGTAA
AGGGAAAGAGTTAGCTTGATGTTCTTATGAAGTAGCTACTTTCGTTCCAATGACAGCTTTCTTTA
GCTGATATCCGTAGTTTAGGCATTAATGTAACATAACACCTGTGGAGTCCCTTTTGCGCGATAGA
ATGCTCAATTTTAGCCATAGAATGTATTTCCAAGATCTTAAAAGAAGGATCTTCAAGAGCTCTGC
TACTAACCTAACTTAATGAGTTAGGCTATTTTGTTTGACAGCACAAAAGCCCTAATAGAGCAGGC
CATTCTTACCTGTATCATTGGCTTCATCGATTCCCTTCCTTTTTCCTTCTCTTTCCTTTGAGCTA
AGTCTCTTGCAGTGGCTCGTGCATCTTTGTTTTATTCCTTTCTTTCAGGAATGAGTAGCCTTCTC
TCCTTCCTTTAGTTCTAGAGTGAATTCAGGAGTTACAGAGCCCTT
Right flanking sequence: Indices 89262 -- 89761
CCTTTATAAGTAGCATTCAGGATCTCTTTATAAGTTGCAATGAAAAAATAGAATATAAGAAGTCA
AGGCTGTAAATGACATGAAAGCCGGAGTCAGATGACCGGTCTGTAACTTATATTATATATTATAA
GAGAAAATAAGATGGAATCTAGCCGGACAAGGAGACAAGGAGGCTATGGGAGTTCTAACCTCCCT
CGATCTGTAACTGCTATTCAAAAATCGTAGTTCTCGGCTTTCTGCTTTGATGAAAGAAGGTTTAT
AGTCTAATCTTAAATAAACCTATATACAAAGGCCTTCAGAAGAGACATGAAAGCTGGAGTAAGAC
AGGAGGTTGGACTTGGACAGCTAGAGCTAGGAGAAAGGGGCGTGAGATAGGCTTCTAGTCAACCG
ATTAAGACTACTACTTCTTTCTAGTAGGCATTAGAGCGATGGACTGAGTCTTGAGAGGAAGCAAG
TGAAAGTTACTACACGAGGAAGTAAAGTGAAGGTGCCTTACCTTC
Found at i:99570 original size:9 final size:9
Alignment explanation
Indices: 99556--99592 Score: 74
Period size: 9 Copynumber: 4.1 Consensus size: 9
99546 TCCCCACCTT
99556 TATCTACTA
1 TATCTACTA
99565 TATCTACTA
1 TATCTACTA
99574 TATCTACTA
1 TATCTACTA
99583 TATCTACTA
1 TATCTACTA
99592 T
1 T
99593 GGGCTAGCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.32, C:0.22, G:0.00, T:0.46
Consensus pattern (9 bp):
TATCTACTA
Left flanking sequence: Indices 99056 -- 99555
TATATAATTTTGAGGTGAGAGGTATTTATAATGGACATCAGCGCAGGGTTAGGGGCATTATTTAT
AAGGGAATTTCATGAAGTAGGCCGGGTTTCTATTTACTTCAAAAGGCCTCCGGCAGGAACGGATG
CCACTTCTTATTGGCGTCTTGGTGCTTGGAGCGACAAGCTGGGATATCCTTCCCTCGTCACGAGG
CATCAGGAACGTCTTATTTTTTCGGGCTCCCCTATGGACCCCGAGAGGATCTATTTTTCTTCTTT
AGTAGGAAGTTCAAAACGCAAGTTCAGTTTCACCTCAGAACTAGGGCTGGTCACGCATACGGCAT
CCCTTTCTCTGAGCATTCTTTATGATACCCATAAATCGGTGAAATGGCTTCACAGTTTCAGGGAT
CGTCTTCTGGCGGGTACCGACAAAGGTGAGTGGGAAATCGAAGCGGGGGAAGATGGCGCAGCTAT
ATCACACTGAGGGTTTCTGCAAAACCGATTTCCTGTCCCCACCTT
Right flanking sequence: Indices 99593 -- 100092
GGGCTAGCGTTGCCAGAAAAAGAGGTTGCTAGGTGTGGTCTTGGCTCTGGACTGGATTCAAGAAG
TCATCTCATGGAGTCGGGCATAAAGAGAATGGTCTTTCAGCAAATGCCCTATTCCCTTTTGTGGG
TTGTTTTCAATGACGGAAGTCTTGCCGGGCTCACCTTCAACGACGAGCAGGGAATCATGGCGTGG
CACAGGCACATATTGGGAGGTACCAATGTAAAGGTCAGGGATCTTGCCTCTATGCCTTCGAAGAA
GAGTGATTACGACGAGTTCTTTCTCTTGTCAAGACGAGACAGGGCGGATCATCCGAATGCGATTG
AGGCTTTGGATAGATAGGCACAAGCGGGTGAAGGAAAGAGATCTTCTTTTGGTTAAAGTTTCTTT
TTAGAAGGCCTATGATCGATTGCGATGGAGTTTCATTCATGACACGTTGAAGGCAATGCACCTCT
CCCCGGACTTCAGAAACTTGATTATGATGTATCACCTCCTCTTCC
Found at i:113241 original size:14 final size:14
Alignment explanation
Indices: 113222--113249 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
113212 TTGATTTCTC
113222 ATTTATTTCTTTTT
1 ATTTATTTCTTTTT
113236 ATTTATTTCTTTTT
1 ATTTATTTCTTTTT
113250 CATATTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (14 bp):
ATTTATTTCTTTTT
Left flanking sequence: Indices 112722 -- 113221
AAACAACAACATTATGTTGACTGTAAGCTACAGAATGCGAGGTTAGGAAGAGTTACGGGACGTAA
AACAAAAAATACGCTGATGGGGGTCGAGCATACTATGTGTAATGAAAAAGTTTACGATAAATAAA
AAAAAAGGCCATTCCATTTCGACAAAAGACCCACACCCAAGTTCCATTATCCCGATCATGATTTT
CCTACCCCCAGAGGGAAAGGCACTTCCCTTTTGGGCCGGTTGTGGGCGAGGAGGGATTCGAACCC
CCGACACCGTGGTTCGTAGCCACGTGCTCTAATCCTCTGAGCTACAGGCCCCACCCCGTCTCCAC
TGGATCCGTTCCCGGGAGTACCAGGAACCTTTCCTCTCCCCAGCCATTTCGGGTTAAGAAGATGT
GAAAGCGCCGTTCTCTCTATAAGAACGGAACGGTGCGTTCCGAGGTGTGAAGTGGGAGAGGAGGG
GTGTCATAATTGGGGTTTTGAATAAGACGACCTTTTTGATTTCTC
Right flanking sequence: Indices 113250 -- 113749
CATATTGAAAAAGAAATAAGAATGGGAGGTGTTAAGCTTTTTATCATCCTGGCGTCGAGCTATTT
TTCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAGTTCGGGATGGA
TTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAGAAAGGCATGAGA
GAAAAGCATATTGGCTAGTGATTGTGAGGCCCCAATTCTTGATTGGAGGGGACACCAAAGGCCTC
TGCCCTTCCATCCCTTGGTTTGGATAGGTAGAGAGGGCAGAGCTTTTGGTTTTTTCATGTTGTCA
AAGAGTTGAACAATGGTTTTTTCGTGTTGTCAAAGAGTTGAACAATGAAAATAGACGGCTAGTGC
CTGACCCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCTC
AGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGA
Found at i:113592 original size:32 final size:32
Alignment explanation
Indices: 113556--113621 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
113546 GCAGAGCTTT
113556 TGGTTTTTTCATGTTGTCAAAGAGTTGAACAA
1 TGGTTTTTTCATGTTGTCAAAGAGTTGAACAA
*
113588 TGGTTTTTTCGTGTTGTCAAAGAGTTGAACAA
1 TGGTTTTTTCATGTTGTCAAAGAGTTGAACAA
113620 TG
1 TG
113622 AAAATAGACG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.26, C:0.09, G:0.24, T:0.41
Consensus pattern (32 bp):
TGGTTTTTTCATGTTGTCAAAGAGTTGAACAA
Left flanking sequence: Indices 113056 -- 113555
TCCCGGGAGTACCAGGAACCTTTCCTCTCCCCAGCCATTTCGGGTTAAGAAGATGTGAAAGCGCC
GTTCTCTCTATAAGAACGGAACGGTGCGTTCCGAGGTGTGAAGTGGGAGAGGAGGGGTGTCATAA
TTGGGGTTTTGAATAAGACGACCTTTTTGATTTCTCATTTATTTCTTTTTATTTATTTCTTTTTC
ATATTGAAAAAGAAATAAGAATGGGAGGTGTTAAGCTTTTTATCATCCTGGCGTCGAGCTATTTT
TCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAGTTCGGGATGGAT
TGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAGAAAGGCATGAGAG
AAAAGCATATTGGCTAGTGATTGTGAGGCCCCAATTCTTGATTGGAGGGGACACCAAAGGCCTCT
GCCCTTCCATCCCTTGGTTTGGATAGGTAGAGAGGGCAGAGCTTT
Right flanking sequence: Indices 113622 -- 114121
AAAATAGACGGCTAGTGCCTGACCCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACC
GGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGATA
AACGGCTCGTCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGG
GGCAGAGAACCCGTCGCTGTCTTGGCTGTGCTACCGGAGGCTCCGGGGAAGTCGGAATAGGAGAG
CACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTA
CCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTA
CTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACG
TTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAA
Found at i:118275 original size:20 final size:20
Alignment explanation
Indices: 118250--118290 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
118240 GGAAAAAGAA
118250 TTTCACGCTTTTCCTTTCGG
1 TTTCACGCTTTTCCTTTCGG
118270 TTTCACGCTTTTCCTTTCGG
1 TTTCACGCTTTTCCTTTCGG
118290 T
1 T
118291 AAGGGAGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.05, C:0.29, G:0.15, T:0.51
Consensus pattern (20 bp):
TTTCACGCTTTTCCTTTCGG
Left flanking sequence: Indices 117750 -- 118249
CATGAAGGAGTCAGATGCTTCTTCTATTCTTTTCCCTGGCGCAGCTGGGCCATCCTGGACTTGAA
CCAGAGACCTCGCCCGTGAAGTAAATCATCGCACCTACGGTCCAACCAATTGGGAGAGAATCAAT
AGATTCCTTTTCGGGAGCGATTCATCCTTCCCGAACGCAGCATACAACTCTCCGTTGTACTGCGC
TCTCCAAGTGTGCTTGTTCCCCCCTTCTTCCTTACCATGGCAAGTCTTTGTGAAAGAACTCCGAT
GAGAAGAAAAAAGAAGGCGTTAAGAGGCCCTCCTGGCCCAACCCTAGACACTCTAAGATCCTTTT
TCAAACCTGCTCCCATTTCGAGTCAAGAGATAGATAAATAGACACATCCCATTGCACCGATCGGG
GGCGTTCGTAGTGACTGAGGGGGTCGAAGACCAAGAAGTGAGTTATTTATACCAAGCATTCTTCT
TACGGCTAGATACAATCTCCTGGTCCTTGCGGAAAGGAAAAAGAA
Right flanking sequence: Indices 118291 -- 118790
AAGGGAGGATTAGGGAAATCCTATTGATTGCAGCTTTCTCCAGACCTCCGGGAAAAGCATGAAAA
AAAAAACGGCTCGAATGGTACGATCCCTCCGTCACCCCAGAATGAAAGGGGTGATCTCGTAGTTC
TTGGTCTGTGAAGATGCGTTGTTAGGTGCTCCATTTTTTTTCCCATTGAGGCCGAACCTAAACCT
GTGCTCGAGAGATAGCTGTCCATACACTGATAAGGGATGTATGGATTCTCGAGAAGAGAGGAGCC
ATGGTGGTCCCCCCCGGACCGCCCGGATCCCACGAGTGAATCGAAAGTTGGATCTACATTGGATC
TCACCTGAATCGCCCCATCTATCCTCCTGAGGAGAAGTTTGGTTTCAAACCCCGGTTCGAACAGG
AGGAGTACGCCATGCTAATGTGCCTTGGATGATCCACATCTCAGGGTCAGGCGCCGATGAGCACA
TTGAACTATCCATGTGGCTGAGAGCCCTCACAGCCCAGGCACAAC
Found at i:138793 original size:12 final size:12
Alignment explanation
Indices: 138769--138845 Score: 102
Period size: 12 Copynumber: 6.5 Consensus size: 12
138759 TTGCCCGGTA
*
138769 CCTCCCCTCCAT
1 CCTCCCCTTCAT
*
138781 CCTACCCTTCAT
1 CCTCCCCTTCAT
138793 CCTCCCCTTCAT
1 CCTCCCCTTCAT
*
138805 CTTCCCCTT-AT
1 CCTCCCCTTCAT
138816 CCTCCCCTTCAT
1 CCTCCCCTTCAT
*
138828 CTTCCCCTTCAT
1 CCTCCCCTTCAT
*
138840 CTTCCC
1 CCTCCC
138846 GAGCGCGGAT
Statistics
Matches: 58, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
11 10 0.17
12 48 0.83
ACGTcount: A:0.09, C:0.56, G:0.00, T:0.35
Consensus pattern (12 bp):
CCTCCCCTTCAT
Left flanking sequence: Indices 138269 -- 138768
GGTCAATGCAAACACTCTGCCTGAAGGATTCTGTTGATTCTGCTGACCTCCACTGCCACTTCCTC
CACCACCAGTGTTACGCGACACTGTACAATCCTTTGCCCTATGTGCCATACTACCACACAAGAAA
CATGCTCCAGTCTGTCTATAACAAGGCTTCCCCGGATGATGTCCACCACATGTAGCACAAGGAGC
AACTGGAATCATATTAGGATTGCCCCCATACACTGAATAACGGCCTTGCCCCTGTTGACGATTCT
GCCACTGTCTAGGCTGCTGCTGCTGAAACTGCTGATTCTGCCTCTGACCTCCATACTGATTTCGA
CCATAAGCTGACTGACCTCCCCTATTCTGATTCTGTCCACGCCACTGTCCCTGCTGACCTCCATA
CCACTGTCTACCCTGTGCTGAAATCTGCTGGTCATCTCTTCCCCTCATCGCATGCGCTTTGCTTC
GACCAGGGTGCTTTTAAGCTGGCTTCTTTCTTTGATTGCCCGGTA
Right flanking sequence: Indices 138846 -- 139345
GAGCGCGGATTCTTGATTTGTTGTATCGCCGTGCTCGATATGACCACACACCGCATTTATATAGG
TATTGTATGAATGAATTATTTCATTTCTCTTCTTAGTCCAAGTATTCTTTTTACCCCTCAGATCT
GCTGGAATGCAATTATTTAAGAGAGTTTTGAGTTCACCAGAAGGTATAACTCTTTCGAATGATGG
ATATTTTTTGGGTTTTGATAAATTCATATAGATGAACTCGTTAATCACTACAAGAGGTGGACCCA
TTTCCATATAGGCACGAGCATACAAAGAAGGTAATTTCTTGCTACATGACATAAAAATACACTAC
TTTGCGCGTCTACAGGCACTTATTTAAATAAGTTGACGGACTCGCCGTCTAGTGATACTTCTGAT
CAAAGGCAAGCTGCACAATTAGGGCTCCCTGCTCCGCCCGCAGCGCTTGCAGCCTCTCCTCCAAA
CCCTCTATGCGCTCTCTGGCAGCGCGAATGCGTGCTTCTTTCACC
Found at i:138824 original size:35 final size:35
Alignment explanation
Indices: 138779--138845 Score: 116
Period size: 35 Copynumber: 1.9 Consensus size: 35
138769 CCTCCCCTCC
138779 ATCCTACCCTTCATCCTCCCCTTCATCTTCCCCTT
1 ATCCTACCCTTCATCCTCCCCTTCATCTTCCCCTT
* *
138814 ATCCTCCCCTTCATCTTCCCCTTCATCTTCCC
1 ATCCTACCCTTCATCCTCCCCTTCATCTTCCC
138846 GAGCGCGGAT
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 30 1.00
ACGTcount: A:0.10, C:0.52, G:0.00, T:0.37
Consensus pattern (35 bp):
ATCCTACCCTTCATCCTCCCCTTCATCTTCCCCTT
Left flanking sequence: Indices 138279 -- 138778
AACACTCTGCCTGAAGGATTCTGTTGATTCTGCTGACCTCCACTGCCACTTCCTCCACCACCAGT
GTTACGCGACACTGTACAATCCTTTGCCCTATGTGCCATACTACCACACAAGAAACATGCTCCAG
TCTGTCTATAACAAGGCTTCCCCGGATGATGTCCACCACATGTAGCACAAGGAGCAACTGGAATC
ATATTAGGATTGCCCCCATACACTGAATAACGGCCTTGCCCCTGTTGACGATTCTGCCACTGTCT
AGGCTGCTGCTGCTGAAACTGCTGATTCTGCCTCTGACCTCCATACTGATTTCGACCATAAGCTG
ACTGACCTCCCCTATTCTGATTCTGTCCACGCCACTGTCCCTGCTGACCTCCATACCACTGTCTA
CCCTGTGCTGAAATCTGCTGGTCATCTCTTCCCCTCATCGCATGCGCTTTGCTTCGACCAGGGTG
CTTTTAAGCTGGCTTCTTTCTTTGATTGCCCGGTACCTCCCCTCC
Right flanking sequence: Indices 138846 -- 139345
GAGCGCGGATTCTTGATTTGTTGTATCGCCGTGCTCGATATGACCACACACCGCATTTATATAGG
TATTGTATGAATGAATTATTTCATTTCTCTTCTTAGTCCAAGTATTCTTTTTACCCCTCAGATCT
GCTGGAATGCAATTATTTAAGAGAGTTTTGAGTTCACCAGAAGGTATAACTCTTTCGAATGATGG
ATATTTTTTGGGTTTTGATAAATTCATATAGATGAACTCGTTAATCACTACAAGAGGTGGACCCA
TTTCCATATAGGCACGAGCATACAAAGAAGGTAATTTCTTGCTACATGACATAAAAATACACTAC
TTTGCGCGTCTACAGGCACTTATTTAAATAAGTTGACGGACTCGCCGTCTAGTGATACTTCTGAT
CAAAGGCAAGCTGCACAATTAGGGCTCCCTGCTCCGCCCGCAGCGCTTGCAGCCTCTCCTCCAAA
CCCTCTATGCGCTCTCTGGCAGCGCGAATGCGTGCTTCTTTCACC
Found at i:144557 original size:14 final size:14
Alignment explanation
Indices: 144538--144565 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
144528 TTGATTTCTC
144538 ATTTATTTCTTTTT
1 ATTTATTTCTTTTT
144552 ATTTATTTCTTTTT
1 ATTTATTTCTTTTT
144566 CATATTGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.79
Consensus pattern (14 bp):
ATTTATTTCTTTTT
Left flanking sequence: Indices 144038 -- 144537
AAACAACAACATTATGTTGACTGTAAGCTACAGAATGCGAGGTTAGGAAGAGTTACGGGACGTAA
AACAAAAAATACGCTGATGGGGGTCGAGCATACTATGTGTAATGAAAAAGTTTACGATAAATAAA
AAAAAAGGCCATTCCATTTCGACAAAAGACCCACACCCAAGTTCCATTATCCCGATCATGATTTT
CCTACCCCCAGAGGGAAAGGCACTTCCCTTTTGGGCCGGTTGTGGGCGAGGAGGGATTCGAACCC
CCGACACCGTGGTTCGTAGCCACGTGCTCTAATCCTCTGAGCTACAGGCCCCACCCCGTCTCCAC
TGGATCCGTTCCCGGGAGTACCAGGAACCTTTCCTCTCCCCAGCCATTTCGGGTTAAGAAGATGT
GAAAGCGCCGTTCTCTCTATAAGAACGGAACGGTGCGTTCCGAGGTGTGAAGTGGGAGAGGAGGG
GTGTCATAATTGGGGTTTTGAATAAGACGACCTTTTTGATTTCTC
Right flanking sequence: Indices 144566 -- 145065
CATATTGAAAAAGAAATAAGAATGGGAGGTGTTAAGCTTTTTATCATCCTGGCGTCGAGCTATTT
TTCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAGTTCGGGATGGA
TTGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAGAAAGGCATGAGA
GAAAAGCATATTGGCTAGTGATTGTGAGGCCCCAATTCTTGATTGGAGGGGACACCAAAGGCCTC
TGCCCTTCCATCCCTTGGTTTGGATAGGTAGAGAGGGCAGAGCTTTTGGTTTTTTCATGTTGTCA
AAGAGTTGAACAATGGTTTTTTCGTGTTGTCAAAGAGTTGAACAATGAAAATAGACGGCTAGTGC
CTGACCCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACCGGTCTGTTAGGATGCCTC
AGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGA
Found at i:144908 original size:32 final size:32
Alignment explanation
Indices: 144872--144937 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
144862 GCAGAGCTTT
144872 TGGTTTTTTCATGTTGTCAAAGAGTTGAACAA
1 TGGTTTTTTCATGTTGTCAAAGAGTTGAACAA
*
144904 TGGTTTTTTCGTGTTGTCAAAGAGTTGAACAA
1 TGGTTTTTTCATGTTGTCAAAGAGTTGAACAA
144936 TG
1 TG
144938 AAAATAGACG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.26, C:0.09, G:0.24, T:0.41
Consensus pattern (32 bp):
TGGTTTTTTCATGTTGTCAAAGAGTTGAACAA
Left flanking sequence: Indices 144372 -- 144871
TCCCGGGAGTACCAGGAACCTTTCCTCTCCCCAGCCATTTCGGGTTAAGAAGATGTGAAAGCGCC
GTTCTCTCTATAAGAACGGAACGGTGCGTTCCGAGGTGTGAAGTGGGAGAGGAGGGGTGTCATAA
TTGGGGTTTTGAATAAGACGACCTTTTTGATTTCTCATTTATTTCTTTTTATTTATTTCTTTTTC
ATATTGAAAAAGAAATAAGAATGGGAGGTGTTAAGCTTTTTATCATCCTGGCGTCGAGCTATTTT
TCCGCAGGACCTCCCCTACAGTATCGTCACCGCAGTAGAGTTTAACCACCAAGTTCGGGATGGAT
TGGTGTGGTTCCTCTACGCCTAGGACACCAGAATATCGAACCATGAACGAAGAAAGGCATGAGAG
AAAAGCATATTGGCTAGTGATTGTGAGGCCCCAATTCTTGATTGGAGGGGACACCAAAGGCCTCT
GCCCTTCCATCCCTTGGTTTGGATAGGTAGAGAGGGCAGAGCTTT
Right flanking sequence: Indices 144938 -- 145437
AAAATAGACGGCTAGTGCCTGACCCGAATTGATCGGGTCATGTAGGAACAAGGTTCAAGTCTACC
GGTCTGTTAGGATGCCTCAGCTGCATACATCACTGCACTTCCACTTGACACCTATCGTAATGATA
AACGGCTCGTCTCGCCGTGACCTTCTCTTGAATTCTCAAAACTTCTGTCGCTCCATCCCCGCAGG
GGCAGAGAACCCGTCGCTGTCTTGGCTGTGCTACCGGAGGCTCCGGGGAAGTCGGAATAGGAGAG
CACTCATCTTGGGGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTA
CCCAGCGTTTACCGTGGGCACGATAACTGGTACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTA
CTAGGGAAAGGTCCTCTCAATGCTCTAACGCCCACACCGGATATGGACCGAACTGTCTCACGACG
TTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAA
Found at i:149591 original size:20 final size:20
Alignment explanation
Indices: 149566--149606 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
149556 GGAAAAAGAA
149566 TTTCACGCTTTTCCTTTCGG
1 TTTCACGCTTTTCCTTTCGG
149586 TTTCACGCTTTTCCTTTCGG
1 TTTCACGCTTTTCCTTTCGG
149606 T
1 T
149607 AAGGGAGGAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.05, C:0.29, G:0.15, T:0.51
Consensus pattern (20 bp):
TTTCACGCTTTTCCTTTCGG
Left flanking sequence: Indices 149066 -- 149565
CATGAAGGAGTCAGATGCTTCTTCTATTCTTTTCCCTGGCGCAGCTGGGCCATCCTGGACTTGAA
CCAGAGACCTCGCCCGTGAAGTAAATCATCGCACCTACGGTCCAACCAATTGGGAGAGAATCAAT
AGATTCCTTTTCGGGAGCGATTCATCCTTCCCGAACGCAGCATACAACTCTCCGTTGTACTGCGC
TCTCCAAGTGTGCTTGTTCCCCCCTTCTTCCTTACCATGGCAAGTCTTTGTGAAAGAACTCCGAT
GAGAAGAAAAAAGAAGGCGTTAAGAGGCCCTCCTGGCCCAACCCTAGACACTCTAAGATCCTTTT
TCAAACCTGCTCCCATTTCGAGTCAAGAGATAGATAAATAGACACATCCCATTGCACCGATCGGG
GGCGTTCGTAGTGACTGAGGGGGTCGAAGACCAAGAAGTGAGTTATTTATACCAAGCATTCTTCT
TACGGCTAGATACAATCTCCTGGTCCTTGCGGAAAGGAAAAAGAA
Right flanking sequence: Indices 149607 -- 150106
AAGGGAGGATTAGGGAAATCCTATTGATTGCAGCTTTCTCCAGACCTCCGGGAAAAGCATGAAAA
AAAAAACGGCTCGAATGGTACGATCCCTCCGTCACCCCAGAATGAAAGGGGTGATCTCGTAGTTC
TTGGTCTGTGAAGATGCGTTGTTAGGTGCTCCATTTTTTTTCCCATTGAGGCCGAACCTAAACCT
GTGCTCGAGAGATAGCTGTCCATACACTGATAAGGGATGTATGGATTCTCGAGAAGAGAGGAGCC
ATGGTGGTCCCCCCCGGACCGCCCGGATCCCACGAGTGAATCGAAAGTTGGATCTACATTGGATC
TCACCTGAATCGCCCCATCTATCCTCCTGAGGAGAAGTTTGGTTTCAAACCCCGGTTCGAACAGG
AGGAGTACGCCATGCTAATGTGCCTTGGATGATCCACATCTCAGGGTCAGGCGCCGATGAGCACA
TTGAACTATCCATGTGGCTGAGAGCCCTCACAGCCCAGGCACAAC
Found at i:169029 original size:16 final size:16
Alignment explanation
Indices: 169008--169042 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
168998 AGTCGCTACA
169008 GAGTAGACTTGAAACC
1 GAGTAGACTTGAAACC
169024 GAGTAGACTTGAAACC
1 GAGTAGACTTGAAACC
169040 GAG
1 GAG
169043 CGGGAACATG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.37, C:0.17, G:0.29, T:0.17
Consensus pattern (16 bp):
GAGTAGACTTGAAACC
Left flanking sequence: Indices 168508 -- 169007
GGCCTATGTTTGCTTTGCTTAGCAGCTGCTCTAAGTGAGTATTCCTAAGCAAGATAGCTTTGTTG
CTCTCCTTTTGATGGTTTAGTGATCTGAGTTCTAGCTTTTGAGTTAGCTCTTTGTCCGGTAAGTT
ATATCAGTTATCTTTTAGTTGCAACATAGCTGTAGCTCTCTGCTTCTATTGCATAGTAATTTCTA
TAGGAGAGGTAAAAAAGGGCGATTTCGTCACGTTTTGGTGACCTGTGATACCTCGGCCGGCTGGT
CCGAAGAAGTGGCAGCAGCATGCAACGTATTGGTGTTTCGGGAAGAAGGCTTGGATACGTAGTTC
GTATTGTCTATTGGCTCCCAATTATCATTGCCTATCCGCTCGAAGCCTTAAAGTAAAAGACTGGG
GAAGTCCATCAATACTGATCGTAGACAATTGACATTAAGTGGGAAGAGTAGACTTCAAGTATTGG
ACTTGCGTGAGTTGGTCGGGTCAAGGACCTGGGGCAGTCGCTACA
Right flanking sequence: Indices 169043 -- 169542
CGGGAACATGGCGGGTAGTAGCCTTTAACAGTGCTGGTCTACCCCGATTTTCTTTCCGGGACTGA
AAGACTTGGTTTCGCCACCCCTATTTCATTAGTAGAGCTCTATTGAGAAAGACCTTGGAATTGGC
CAATCACCAAGGGTTAGCATTCTGTTATAACGAATAGAACGAACTCGAGTTCAGTTCACCAGTAC
GGTACAGCCGGGGGAGCGGAGAAGGGTACAGCACAACTAGAATGTTTTTTCGCTTCCGAAAGAAG
TAATGCAATTGGTTGACCCAGGAAAGACCCCTACCGCTAACTTCTCTGTCCTAATCTCCTGTGTC
GAAGCTTTCTTGTTCTACAGGTCCGGACTTTCGAGAATCGAAAGATTGCCCCTTATTTGCTAAGG
ATCAAACAGTCTCAGTCAAGGTCTGCCTAGCGAAATAAATAATGATAGTAGTTGTAGAGATCTAC
CCGCTCATATGAGTTCCGTGAACAACAAAAATAAGGGCAGTAGGG
Found at i:171162 original size:17 final size:17
Alignment explanation
Indices: 171140--171172 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
171130 TCCTAGGGCT
171140 TTAAAAGGCTTTAAAAA
1 TTAAAAGGCTTTAAAAA
171157 TTAAAAGGCTTTAAAA
1 TTAAAAGGCTTTAAAA
171173 GAAGAGTACG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.12, T:0.30
Consensus pattern (17 bp):
TTAAAAGGCTTTAAAAA
Left flanking sequence: Indices 170640 -- 171139
CCAATCTCGTCGGGTAAATATAAATAATGGGCTCTTAGTGGGCAATCCCCTGTTCTCTTTGCTGT
TGCTTGAGAATCCGCAGAAGGGCTTAGACGAGACCTAGCATCTCTCAGCTCAGATTCGGCATATC
CGGTCTTAGCAGCAAATCCTTCCTCCGAAGATGGACAGCATCCGCTCTTTGACACCCGCAATGGG
CATGGTATCCCCATAGTCAAAGCAGAGAGAAAGAGAAGAGTTAGAACAAGAAGGATTAGTTAGCA
CTACCCCAGATCCATATGCATAGTAAAATAAGAGGGTAGACAGAGGTGCAACCTTATTGGCTTAA
GCTTCCTATTTTGTCCATGAGGAGGAAGAATACCGGGTTATCGAATCCCCTGCATGTGAGGGTGG
TAGTTTATGCCAAAAAGAATCCCGAGGTCAAAAGTAAATCAGAATAGGCTTTGAGGGAGAAGGAA
TCCCCAGCTATTGACTCAGCTACTATTGAATCCGATCCTAGGGCT
Right flanking sequence: Indices 171173 -- 171672
GAAGAGTACGAGTTAGCAGGGCTGTCTCACCTTGGGCTTGTTGGCCTAGCTTTTGGCGGAATAAC
CGCAGTAACCTCCTTCACCTAAATAACTATCGTATAGCTAACACGAACGGAATTCATTAATATTT
AGCGATGCACCAGCTTTTTGGCCCAGTCAGCAAGCCAGGCCACGATCGCCACTTTTTTGTACCTT
CTCTATTCCGTGCCCTTAGGGGCAAGCCCTTTGAACAACAGCTGGCAAACAAAATCACTGAGGAA
TCGAACCTCAGCTAATGATTTTTGCGAACTAGATATCCAATTGAGTTACCTCCCGCCCACCCTCG
TAATAGTCACTTAGCTTCTACGGCTAAAGCATCTAGCAAAGAGTCAAACTGAACTAAAGACCAAA
CAGAAGGCGGCTACTCACGTTTTTAATTAATTGAAAGTAGGTATCACCCCCCACTCAACTGAATC
AAGGTTTGTACAGCTTGATGGAACCACTCACTTCCCATTCCTTTC
Found at i:188374 original size:10 final size:10
Alignment explanation
Indices: 188359--188418 Score: 120
Period size: 10 Copynumber: 6.0 Consensus size: 10
188349 ACCTAATCTT
188359 AAAAGCCTAA
1 AAAAGCCTAA
188369 AAAAGCCTAA
1 AAAAGCCTAA
188379 AAAAGCCTAA
1 AAAAGCCTAA
188389 AAAAGCCTAA
1 AAAAGCCTAA
188399 AAAAGCCTAA
1 AAAAGCCTAA
188409 AAAAGCCTAA
1 AAAAGCCTAA
188419 GGCTCCGCTC
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 50 1.00
ACGTcount: A:0.60, C:0.20, G:0.10, T:0.10
Consensus pattern (10 bp):
AAAAGCCTAA
Left flanking sequence: Indices 187859 -- 188358
GTCTCTTTCCCACACGTGCAACTCTAGCCGGTCCAGTCGTTTCCTTATATTCATTCACTAGCATT
TCAAGTTTCTTTGCCGTTTTTTGTTTCATCCGACTTAGATTGAACTCATGCATGCTGTCGAAAGT
CATCTTTTGTTCGAAGGCTTGTCCAGCCTTATAAGCACCAAAAAGTGCCATCTCAATCTCAAGGT
GACTAGATTGAGTGGGTTAGAGGGACCTCAGAGCAAGCAAGCAGTCACTGCAAGGAAAGCAAAGA
GAGAAGCTAGTCCCGAAAGGGCTTAAGACAACTAATCCCAGGTGCGGGAGTCTTGAGTACGCTAA
TGAGTAAGGGGATTCCCACTTCCGTAGTGGAAGGCATAGTATGAGGTACTGCCCGGTTCTCTTCT
ACCCTATCCACACCGCCCATCTATGCTGATCGAGAGCCCGACCCATTCCTTTCCTAAGGGACCTG
GCGACCTTGCCCCTATCTCACTCAGCATTCGGGACACCTAATCTT
Right flanking sequence: Indices 188419 -- 188918
GGCTCCGCTCTTCTTCCAACTTCCGTCGTCTCAGTCCTGTCCCGCCTTGAGTATCAGTGGTTAGA
GTATTGGTGAGCGACTAGTTAGAAGTTTGACGAGAAAGAAGTGAGTGCGCTACGCTAAAGCCGAG
AACACTTTCCGCTGACCAATATCTTACCTTGCTTACTGAACTTGTTAGCTGCGGAAGTCACTCTA
AGAGAACAATTTCATTGCCTCAAGTCAAACAATAACTCTAACTCTTAGCGCAAAGGCATAGATTC
GAGTCTCAATACTATCTTGTCACATTGATCCTAGGGTAACGAATGGACCCAGAGAGGAGAGGCAG
CAAGTAAAGTCTTACTCAAAACTAGCTTTGCCGCACGAAGGGATTTCAAACATCGATGCTCATCA
ACAGTAGGTCTTTTTTCATAGATAGAAAGAGTCGTGAAGTTTTACAACCAGGAATTGAACTGTCT
GCGATTCATCCACCAATACTGAATACGATGGTGAAGTTGATATAT
Found at i:192362 original size:15 final size:15
Alignment explanation
Indices: 192342--192373 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
192332 ATGACAACTA
192342 TAGGATCAATCATGT
1 TAGGATCAATCATGT
192357 TAGGATCAATCATGT
1 TAGGATCAATCATGT
192372 TA
1 TA
192374 TATATTTCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.34
Consensus pattern (15 bp):
TAGGATCAATCATGT
Left flanking sequence: Indices 191842 -- 192341
GACTGAGCACCGGACCAACCCGACTAAATGTTTAGCATGGTTTCCGGGAGTTGCTTGCCTAACCC
TGGCGTTTTGCCATATCGGCGTGGGTCGCCCATATCTTTTTTTTTTTTCCTGACCCTCACTGGTT
CTCCTTTATCTCCTATCTGTCTTGTATGTCCTTACCTACAATCTATTCCCAAAGGGCCTCGTTTC
ATGTAGAATCGTTTTAGATCATCCCCAAGCCCACAAGAGGTGCTTGCTTTATGAAACTTAAATCT
TGAAATAGAAATGAGATCAGAGAGCTTATCCTCATTAATATGGACTTGGCGCACGAACAAAAGTA
AAAGCAACTAGAATGAGAATAGAGGGAATCTTCAGATTCAATAATATTAGTAGTGGAACTTTCTG
ATCAAACTCGAAATTGCATAAGAGAAGAAGATCGTAAGTAACCTTGGCGCAAAAGCAAGCGGCGG
CGTCCGGAGCCTCGCGGGTATATTATAAAACAAAAATGACAACTA
Right flanking sequence: Indices 192374 -- 192873
TATATTTCAAGGGCTAGATCAGTTGCCTCAAGAGGGTTCATGTTTCTATGTGCACGATTTTACTT
TTCTCTATTGCGTGTGGATTTCACTTTCTGGTTTTTTGTTGAGAATCTCGCCAAATGCACGGCGC
ATCCGAATCTAGTTTTATTGCTTGTCAGGCTAGCCCTGTTCCAGGTGCTTTTCTCGCTTGGCATG
CTCCTCATGGACGAGCTTTGGCCAGCTGTTAAGCCATTCCTACCAGGCGCGGGCGAAAGTAGTCA
ACCCGTAGATGGCGGATTCAATCCACTTCCGGGCCCTTCAGGCTCCTCGGACCCCACTTTCTTCG
GAGCGGCGGGGGTGGACATATTAGACCGAGATCAACTCCCGGCGTCTCCAGGCGCTATTTGTTCC
GAAGGATTAGAAGAATTCTGTGATTTCATAGATAGTGATGAAGTAGAGCAACCGGCAGCCCCTGA
GCTCGCTGATGAATTAGAACCGCTCACCGGAGATCTGATGGACAT
Found at i:193960 original size:16 final size:16
Alignment explanation
Indices: 193939--193974 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
193929 GAGGAGTCAG
193939 CCAAAAATAAAGACCA
1 CCAAAAATAAAGACCA
* *
193955 CCAAAAGTAACGACCA
1 CCAAAAATAAAGACCA
193971 CCAA
1 CCAA
193975 GATACGCATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.56, C:0.31, G:0.08, T:0.06
Consensus pattern (16 bp):
CCAAAAATAAAGACCA
Left flanking sequence: Indices 193439 -- 193938
GGAGCGGATTCCCCACCGGCAGGGGGACAGGAGACGGCCATCTCAAGGCACATCACGACCTACAG
GCAACACCGGCGAGACCTGGGAAGGCAACCCGATTGGGAGTCAGAGGATCCATAGTACCCGCAGC
CCCCCGGACTTCATATTCATCATTTTTTAAAGCGGGGGGAAGGGATCTTTTTTCTGCAACGGAAA
AAACGGAGCAGATTTGACTCGGCACAACCTAACGATACATCCGATACCAACGATCTGTGCCTAGA
ATGCCTTGCTAGATCTCTGCTCTAGAGCTAGGCATCAGGTAACATGAGATAGCAGAGAGGACTTC
TTTTTCATTCTATATAGGGGGAGCTGTTGTGAAGCCTAGAAAGGCGGAAGCGGCAAATCGCTTCT
ACCGAGTTCCTCAACAGTAGCTTAGCTTAGGCTTAGCAGATAGCTTAATTCTAAGCCGGCGTGGC
GCTGCTAGACGCTTCTGATCACAATAAAACAGGAAGAGGAGTCAG
Right flanking sequence: Indices 193975 -- 194474
GATACGCATAGTGATTCGATCTTTTGATCACCCATTTTTTGAAAACCCTTTTTGGGGGCTTCCGC
CTTACACACGGAAGATTGGATTGCCTGAATCACGAGTCTTATATACTGTGTTACGATCACCTCAT
ATTGATAAAAAGTCCAGAGAACAATTTGAAATGGAAATAAAGAAACAATTTCTGGTCATAAAAGC
AGAAAGGCATGAATTGCGCAAGAAGTTCTTTCGGTTAAAACGCCGTGCGACTCGTAGGACATAAG
ACTTCTTGGTCAAGCCAAAAAAAGATTTGCCGACTGGATGCTCCTACCCCACCATGCCTGGCCCT
TTACCTTATCTTAAAAGAGGGGGGTATGAAGCGTGGGAAAGAAGTGTATGATACAACGGGTAACC
TTAAGGAGTGGCGGCAACCCTCTTGATTGATCAACGCGAGTGAACTGTGCTTAGACGCTTCGTAA
AACCGCGCCGATCTACGAGAGGAGCTGATAGATGAGTAGGCTTCT
Found at i:205928 original size:15 final size:15
Alignment explanation
Indices: 205908--205939 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
205898 AGAGCTATCA
*
205908 TCACTTCGCTTCGTT
1 TCACTTAGCTTCGTT
205923 TCACTTAGCTTCGTT
1 TCACTTAGCTTCGTT
205938 TC
1 TC
205940 TTTATTCACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.09, C:0.31, G:0.12, T:0.47
Consensus pattern (15 bp):
TCACTTAGCTTCGTT
Left flanking sequence: Indices 205408 -- 205907
ACAAAAACTTAGTTGAGGTTCTAACCCTATTTAATGGGACCTTTGGTCGTTTTTTAATACTAACC
TGTACAGGAAGGCGTAAACTCCTTTAGCGCCGAAAGCATCTTCCGGGAAGGGCTCTCCTATCTTC
TACACTGTCGTCGACCCAATCACCAATACCAAGTAAGAGCAATTAGCCCTATGTTTGTTCCTTTT
GGAAGTGTAGGGAAAGAGCTTGACCATAAGGGAAAGGCTTTGAAGTAGTCGTATCTGTTGAAGTT
GTTGAAGAGCTATCATAAGAAGTGCTAGTTTCAGAGTCATCACTTTGCTTCGTTTTGTTGCCATC
TGAACGAAGAGTTGGATAGATGTTGCCAGAGCTATTGTTATTGCTGTTATGGTTATTGCCAGAGC
TATCGTTTCCGTAGCCGTCTTCACTAGCCTCTCCGTAGCCAGGGCTACTCTGAGATCTTTCTTTC
ACTTCGTTGTCATCCGTAGCATCACTCCCAGAGCTAGAGCTATCA
Right flanking sequence: Indices 205940 -- 206439
TTTATTCACAAATTCTCTTTTCATTTTTTTGACAAGTGCATCCCATCCTGAAGAACTGTTAGTTG
TGGTACTAGTAGTAGAAGAATTGTTGTAGCCTTTGTTATGGCTATCATCAGAATGGTTATCAGAA
GTGCTATTGTTGCTTTCCCGCGCATCACTACTAAAGCTAGAGTCAGAGCTAGTTGAAGAAGTAGT
GCCAGAGCTAGAGCTATCATCTTCTCTGCTCTGAGATCTTTCTTTAGACCTGTTAGTAGTCTTGT
CATCTGTACTAGAAAAAGTGCTATCATAGTAGCTACCATTGCCACCTTTCCCGTTTCTTTCAGAA
CCTTTATTGCTGCTATCGTTGCCATCATAGCTATAAGAAGTGCTAGTTGAAGAGTCACTCCCAGG
AGAATCTTCATGATTGCCTTCTTCACTGTCATGGCTGCTATCATCACTCAGATCAATAGTTTCTT
TCATGTCATACCCAGAGCTGCTAGGTTGTTAACTGCTTATACTAA
Found at i:240032 original size:70 final size:71
Alignment explanation
Indices: 239945--240081 Score: 224
Period size: 71 Copynumber: 1.9 Consensus size: 71
239935 CGCTATTCGA
*
239945 TGAAGAAAACAGACTTTAGTCAA-GTGG-TAAGGTAGTTCAGCTGGTTAGAGCAAAGGACTGAAA
1 TGAAGAAAACAGACTTTAG-CAAGGTGGTTAAGGTAGCTCAGCTGGTTAGAGCAAAGGACTGAAA
240008 ATCTCCT
65 ATCTCCT
* *
240015 TGAAGAAAACAGACTTTAGGAAGGTGGTTCAGGTAGCTCAGCTGGTTAGAGCAAAGGACTGAAAA
1 TGAAGAAAACAGACTTTAGCAAGGTGGTTAAGGTAGCTCAGCTGGTTAGAGCAAAGGACTGAAAA
240080 TC
66 TC
240082 CTTGTGTCAG
Statistics
Matches: 62, Mismatches: 3, Indels: 3
0.91 0.04 0.04
Matches are distributed among these distances:
69 2 0.03
70 23 0.37
71 37 0.60
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.23
Consensus pattern (71 bp):
TGAAGAAAACAGACTTTAGCAAGGTGGTTAAGGTAGCTCAGCTGGTTAGAGCAAAGGACTGAAAA
TCTCCT
Left flanking sequence: Indices 239445 -- 239944
TCAGCGGTGGGGTGTTCATAGAAAAGAAGGCGTCGCCCAACGAATGGCAGATTTGGGTGGAGTCT
CGCTCTATAGATAGAGGAAGAGTACGCGCGCTAGCGCGCTACGGCTTACGCAGTTGATCGGATCA
GATAGCCCTTCGGGCAACCAACCAAACCCGGCACATCAAATTCCATTCCGATCAACAACTTGGAG
GTATGGCTGAGTGGCTTAAGGCATTGGTTTGCTAAATCGACATACAAGAAGATTGTATCATGGGT
TCGAATCCCATTTCCTCCGGCACGGAAGTGAAACGGGCGGGCGAAATTACGTGAGAGAAAGAACC
TCTTGGTGGAGTCCAGTCCCTGGACGGCTCTCGGTTATTGAGCATGGTTGGGGGATTAGGCGGCA
AAGAGCTGCTCGAAAGCTTGACGAACAAGCGAAAAAGCCTATCAATTCTTTTCTTTTTAGTTTAG
GGGTTTTCCCTTACTAGTCAAGTGGTAAGGTAGGGCGCTATTCGA
Right flanking sequence: Indices 240082 -- 240581
CTTGTGTCAGTGGTTCGAATCCACTTCTAAGCGGGCGAAGGGTCCAAAGGCCGGGAGCGAGCCGG
ATTTCAAAATGAAAGTTAAAGAGTAAGCCAAAAAATGTGAGCGCTCCTGCACTATAGGCTTTTTT
TGGCGTCGCCCTATCTTGCTGGAGGCAGATAAAAAGCGGTTGATTACTCAGATTGGTTCTCGCGT
CCCTGTGCCCAAAAGGACGGGCGAGTTCGGTTTGAGTGTTCATCGATCGGGTGGATCTATATGCT
CCGGGGCGGTGAGACGAGGTGTAGCGCAGTCTGGTCAGCGCATCTGTTTTGGGTACAGAGGGCCA
TAGGTTCGAATCCTGTCACCTTGATGTGATGCAAAAGATCATCAGAAAGGATACAACCCATTTCT
CTTTATGATTCCAGCCAAGAAGACTCGTAAAAAGAAGGATCAATCATGTTATATATTTCAGGAGC
TAGATCAGTTGCCGAGAAACAAGTCAGAATTGCCTCAACAAAAAT
Found at i:268594 original size:15 final size:15
Alignment explanation
Indices: 268574--268605 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
268564 AGAGCTATCA
*
268574 TCACTTCGCTTCGTT
1 TCACTTAGCTTCGTT
268589 TCACTTAGCTTCGTT
1 TCACTTAGCTTCGTT
268604 TC
1 TC
268606 TTTATTCACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.09, C:0.31, G:0.12, T:0.47
Consensus pattern (15 bp):
TCACTTAGCTTCGTT
Left flanking sequence: Indices 268074 -- 268573
ACAAAAACTTAGTTGAGGTTCTAACCCTATTTAATGGGACCTTTGGTCGTTTTTTAATACTAACC
TGTACAGGAAGGCGTAAACTCCTTTAGCGCCGAAAGCATCTTCCGGGAAGGGCTCTCCTATCTTC
TACACTGTCGTCGACCCAATCACCAATACCAAGTAAGAGCAATTAGCCCTATGTTTGTTCCTTTT
GGAAGTGTAGGGAAAGAGCTTGACCATAAGGGAAAGGCTTTGAAGTAGTCGTATCTGTTGAAGTT
GTTGAAGAGCTATCATAAGAAGTGCTAGTTTCAGAGTCATCACTTTGCTTCGTTTTGTTGCCATC
TGAACGAAGAGTTGGATAGATGTTGCCAGAGCTATTGTTATTGCTGTTATGGTTATTGCCAGAGC
TATCGTTTCCGTAGCCGTCTTCACTAGCCTCTCCGTAGCCAGGGCTACTCTGAGATCTTTCTTTC
ACTTCGTTGTCATCCGTAGCATCACTCCCAGAGCTAGAGCTATCA
Right flanking sequence: Indices 268606 -- 269105
TTTATTCACAAATTCTCTTTTCATTTTTTTGACAAGTGCATCCCATCCTGAAGAACTGTTAGTTG
TGGTACTAGTAGTAGAAGAATTGTTGTAGCCTTTGTTATGGCTATCATCAGAATGGTTATCAGAA
GTGCTATTGTTGCTTTCCCGCGCATCACTACTAAAGCTAGAGTCAGAGCTAGTTGAAGAAGTAGT
GCCAGAGCTAGAGCTATCATCTTCTCTGCTCTGAGATCTTTCTTTAGACCTGTTAGTAGTCTTGT
CATCTGTACTAGAAAAAGTGCTATCATAGTAGCTACCATTGCCACCTTTCCCGTTTCTTTCAGAA
CCTTTATTGCTGCTATCGTTGCCATCATAGCTATAAGAAGTGCTAGTTGAAGAGTCACTCCCAGG
AGAATCTTCATGATTGCCTTCTTCACTGTCATGGCTGCTATCATCACTCAGATCAATAGTTTCTT
TCATGTCATACCCAGAGCTGCTAGGTTGTTAACTGCTTATACTAA
Found at i:275435 original size:24 final size:24
Alignment explanation
Indices: 275406--275454 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
275396 CACTGATGAG
275406 AGCAATGACAGCGACTACGATAGC
1 AGCAATGACAGCGACTACGATAGC
*
275430 AGCAATGACAGCTACTACGATAGC
1 AGCAATGACAGCGACTACGATAGC
275454 A
1 A
275455 CTGATAGAAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.39, C:0.24, G:0.22, T:0.14
Consensus pattern (24 bp):
AGCAATGACAGCGACTACGATAGC
Left flanking sequence: Indices 274906 -- 275405
AATGCATTGGGACGAAGCATCCTCTATCTACAGTCAACGGTGGCATTATATTCACGAGTAGCTCT
ATTTGTGACCTTTTCTCGTATATAAGAATGGATAAATAGGTATACGAAGCCAGGTTCCCTATGGA
TGGAGACGAAAGATTCGAATCTTTAGCTGACTTCCTACCTTCTTATGATAGCTATCATTATGAGA
GCAATGGCAGCTACTATGATAGCTATGATTATGAGAGCAATGGCAAGAATGATGATTCTAGCTTA
ACTACAAGTGTAAACGATACCACTACAAGCGAAGACAGAGTAACCAACGATTACACTACAAGCTA
TGATTATGATATTGTAAACGATACCACTACAAGCTATGATGATGAGAGCAATGGCAGCTACTATG
ATATATGCAATGATGTAGAGAGCAAGAATGATGATTCTAGCTCAACTACAAGAACCAACGATTAC
ACTACAAGCTCGAGCAATGGCAGCTACTATGATTGCACTGATGAG
Right flanking sequence: Indices 275455 -- 275954
CTGATAGAAGTGCCCTAGTTGATGTTGATAGAAAGACTGATCATACGCAAGATAAAGCACTGGTG
CGGTCGAGCGTCTTTCAGAACGAAGAGCGCAACAAAGAGATCGAGCATCTTGAGAAGAATCTAGA
TGATCCATAGATAAGCGAAAACAAGCCTATACATAGGATATCGGCTGAAAGAGCTTCTATTATAG
AAAAAAACAAGCTAGGTACGGAGTAATCAGCTTTTACTTGATTGAGTACCTTACAGCAGGTATTC
TTTAATAAAGGATACAAGCACCGGCTAGCGGCCTAAACACCAGCGAAGGAGATGAGAGTTAACTC
ACCTTTGTTTAGGACAACCAGCTTTCACATTGGTGTTCATACGAAGGATTTCTCTTAGTAGACGT
GTTGCTAGACAGTCCCGCTTCGCGAAGAACCATATTTAGTTGTACACGACTGTTAAAACAATACT
TCCGGAACAGCGATAGGAAGAGAACAACCAAACTATTCAAGTGAT
Found at i:283880 original size:25 final size:25
Alignment explanation
Indices: 283840--283906 Score: 116
Period size: 25 Copynumber: 2.7 Consensus size: 25
283830 CTAAGACACT
283840 TGATACCCAAGCAGAGGTAGATAAA
1 TGATACCCAAGCAGAGGTAGATAAA
* *
283865 TGATACCCAGGTAGAGGTAGATAAA
1 TGATACCCAAGCAGAGGTAGATAAA
283890 TGATACCCAAGCAGAGG
1 TGATACCCAAGCAGAGG
283907 GAATGTTAGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.40, C:0.16, G:0.27, T:0.16
Consensus pattern (25 bp):
TGATACCCAAGCAGAGGTAGATAAA
Left flanking sequence: Indices 283340 -- 283839
TAATGAAAGTGAATGAGCTTTCTGCTGGACTAAGGAGAAAACACCTTTTTCTATACTTACGGGAA
TGAAAGAAACTTCACTTCATTTTATGATAGTCAATAGAGTATAAAGCCCGTCCTCTACCACCAGT
CAAAAATCTTCCTTTCAAGTCCTTAGAATCATAGGAGCAGGACTTACCTTTTAGGACTAAAAAGA
CTGACAGGAACTCCCCGTTACCTATTCCATCCTAAGGGGCGTCCGGAGACAGTCCGCGCTCAAAA
TAGGACCTCAGAGCCTCTCCTAGCTTCTTTCTTTTCTTTGTCTTCTATCGTTCGTATACTCACTT
GCTAGCTTCTATCGTTCGTATACCGTATATAGGTATACTCACTAGCTTTCTTTGTGCAAGACTTC
TTGTAAGCTTACCCAGAAAAGAAAATATCATACCACAGTTGATACCCAAGCAGAGGTATATAAAT
GATACCCAAGCAGAGGGAATGTTAGGAAAAATCTTCTAAGACACT
Right flanking sequence: Indices 283907 -- 284406
GAATGTTAGGAGTTCCCCTTATGTGAAGAGTGAGAAAGCTCTATCAAAGGTATAAGAGTGGACTT
CTAACTAGTAGCTAGTCTGAGGTAAACGACTGAACGATTGGTAATTGAGTTCAGGACTGGTAATT
GAATCATAGACTAAGCATTGTGAAGAGCTCAACTTATTCTAATGAATGCAATGATTCTGGGCAAT
TTCCGAACTCTAATGAGGAACGGAGAATCACTCATTAAAGCTGTGGAAGTAGGGATTGTTGCATT
CATTAAAGCAAAGTAAACGATACACGTTGATTGCGCGGATAAGCCTTCTTTCCTTCTAACGAAGG
CAAGCCGTTAGTCAAGAGGTTAGTTACCAGTTCTTCGTTCATAGGTACTCCCGGAGGTAGGGAAG
GAACAGATTCGATACTAAAGAGCAATAGGGCACTCCTAAGCGAAGAAGGCAGTGAGCTCGGTTCA
GGAACTTGCCTGCATGAATGAATCTTTCGAGAAAGCACGGTGCTT
Found at i:286411 original size:15 final size:15
Alignment explanation
Indices: 286391--286434 Score: 88
Period size: 15 Copynumber: 2.9 Consensus size: 15
286381 TATCATGACT
286391 ATGCCAATAAAGATG
1 ATGCCAATAAAGATG
286406 ATGCCAATAAAGATG
1 ATGCCAATAAAGATG
286421 ATGCCAATAAAGAT
1 ATGCCAATAAAGAT
286435 AATGACTATG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 29 1.00
ACGTcount: A:0.48, C:0.14, G:0.18, T:0.20
Consensus pattern (15 bp):
ATGCCAATAAAGATG
Left flanking sequence: Indices 285891 -- 286390
ATACTGTACAGGTTATTCGAGTAAGTTTGATTACGATCGATTATATACGCGAATTGTAAGAACAT
CATATGAGACCCCTCATCCGTCTTTGATTCTAGCTGCACATGAGATATACCCGGGCTTTACTGCT
AAGGAAAAAGACTTAATAAGTCTTGCTGTAATGGATCTTCTCATTCGTTTTATCTTCTCATCGGT
AGATGGTTATACCAAATTCCTTATGGTCTTTACTTTTGTTAATAAGGATGGTCAAGATTTTACAT
TTAGTATAAGTAAAGCAATACCATTGACTCTAGAAGATGGTAGCGCGTTCCTTCCTTATAAGGAT
ATCTTTCGTTATATCTATAATGCAGTTATCAAAGCTTTTGAGAACTACGATGGTTTTTTCATTAA
AAAAGTAGCCCTGCGTGTCTTTCTAACTGGTAAGAATCTTGAAAACCATCTATCAAAAGAAGAAA
TCATAAAGATCCTTGATGCCCTTTTAGAGGATCTTTATCATGACT
Right flanking sequence: Indices 286435 -- 286934
AATGACTATGATTATAAAAATGATGGTTACGGCAAGCAGCGTCTTCTTTCTAAGGTCTTTACCGA
CAAAGTTCGAAGAGATGTCAAACCCCCTGTTGCTCAACCTATTTCGAATAAGAAACGTACTTATA
ATAGCAATATCTCGAGAATCCTTTCTTCAAAAGAAAAGGGTGTAACACCTTTTATGGTGGCCGAT
ATTGAGACAATCCTTATGAAGGACGATGCTACGGGTGTGGAAGTGCAGACTCCATACGCGGCAGG
TTTACTGGTGGTTTTACCTGAAAAGGAAGTGGATAAAGCTGATATTAAAATTTTCTCTAGCGAGT
ATTTCTTATACAAAAAATTGTATTCATCCTTCAAAGATAGGAGCAATAGGATCCTATGTGATCTG
GTTACCCATATTGATATATTAGTTACTACACAGTATAAGACAGCTAAGTGTATATACTTACATAA
CTTATCACGATTCGATGGAATAATATTGCTTAAGCACTTAATCTG
Found at i:288694 original size:27 final size:27
Alignment explanation
Indices: 288657--288746 Score: 144
Period size: 27 Copynumber: 3.3 Consensus size: 27
288647 ATGCTGACAG
* * *
288657 AGAATCTGATAGATCAGGCATTCTTTC
1 AGAATCTGATAGCTCAGGCAATCATTC
288684 AGAATCTGATAGCTCAGGCAATCATTC
1 AGAATCTGATAGCTCAGGCAATCATTC
288711 AGAATCTGATAGCTCAGGCAATCATTC
1 AGAATCTGATAGCTCAGGCAATCATTC
*
288738 AGACTCTGA
1 AGAATCTGA
288747 AACTACGCCT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (27 bp):
AGAATCTGATAGCTCAGGCAATCATTC
Left flanking sequence: Indices 288157 -- 288656
TCTATCGTTCTTGGTAACCCACTCTCAGATGAGATGATATCTTCTTCAGTCTTAGGTAAGTTTAA
GCTAGAAGATAAAATAGTTGATGGTATCTTTTTAGCACCTAAAACCTATACCTATACTACTAAGG
TAGAAGAAGTAATAAAACACAAGGGTGCAGCAAAACATTTTGCTGATAGGGCTTGGTTTGAAAAC
CAATATGCTAGAATAAAAAACAATCAAAGTGTACCGTATTCTACTCCTTTTAGTGTTGATTGGAA
TAATCTTCAGATAGTTAATAAAACTACGAGTCTTGAGATGAATGTGGATATCGGTACCAAAAGGC
ATGTGGTATTCAATGAAAATAATGTTTGGGTTGAGACTAAACCCTTTAAAGTGGAAGACTTAAAA
GACTCCTCACATGAGGACTTGCTATACATTATCAAGATAATCACTTCTGAGAAAGATTCGTTTGA
AAGCCTAAATACCACGCTTGAAACATATCAGAGTGATGCTGACAG
Right flanking sequence: Indices 288747 -- 289246
AACTACGCCTCGTTTAGAGACTAGTGATGGTAGTGATTCAGACTGGGACGGCAACGGCAGCTCTG
GGAGTGAAGAAGAGAATAGCAGCCATGACACGCCTACTATTTCTTCGCCTACCAGCTCAGGCAGT
TCTGATGAAACTAGCTATGATGGCAATGATAGCTCAGACTCAGGCAACGATAGCTCTGGCTACGA
TTCAAGTGACAATAAGAGTTGTACCCCTCCTGATAATGATAAAGAAACGAAGGATGGGCCCTCCT
TGAAGTTTCGCCGATGACTTCCTCTTCATTCTTTCCATATCCCTATAAGGTCTTTCACTCTCCTT
TGTTATCTTCTTTCTTTTTGATTTTGACTTGGTTGGCAGGGTCAGGGCCTTTCTCGCTGGGCGAG
CGCATCCGATTCTAAAGTCCTTTCCTAAACCACTTCCCGTTCAGTTGCTGAAAGATAGAGATAAG
GCTTTCTAAATGAGATTGATTTCCACGAATATGCAGGCTAGAAAG
Found at i:293120 original size:7 final size:7
Alignment explanation
Indices: 293108--293143 Score: 72
Period size: 7 Copynumber: 5.1 Consensus size: 7
293098 CAGAGCCCTT
293108 GATTAAG
1 GATTAAG
293115 GATTAAG
1 GATTAAG
293122 GATTAAG
1 GATTAAG
293129 GATTAAG
1 GATTAAG
293136 GATTAAG
1 GATTAAG
293143 G
1 G
293144 CCTTTATAAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 29 1.00
ACGTcount: A:0.42, C:0.00, G:0.31, T:0.28
Consensus pattern (7 bp):
GATTAAG
Left flanking sequence: Indices 292608 -- 293107
GCAAGTGAGTATACCTATATACGGTATACGAGCGATAGAAGACAAAGAAAAGAAATACTAAGTAA
AGGGAAAGAGTTAGCTTGATGTTCTTATGAAGTAGCTACTTTCGTTCCAATGACAGCTTTCTTTA
GCTGATATCCGTAGTTTAGGCATTAATGTAACATAACACCTGTGGAGTCCCTTTTGCGCGATAGA
ATGCTCAATTTTAGCCATAGAATGTATTTCCAAGATCTTAAAAGAAGGATCTTCAAGAGCTCTGC
TACTAACCTAACTTAATGAGTTAGGCTATTTTGTTTGACAGCACAAAAGCCCTAATAGAGCAGGC
CATTCTTACCTGTATCATTGGCTTCATCGATTCCCTTCCTTTTTCCTTCTCTTTCCTTTGAGCTA
AGTCTCTTGCAGTGGCTCGTGCATCTTTGTTTTATTCCTTTCTTTCAGGAATGAGTAGCCTTCTC
TCCTTCCTTTAGTTCTAGAGTGAATTCAGGAGTTACAGAGCCCTT
Right flanking sequence: Indices 293144 -- 293643
CCTTTATAAGTAGCATTCAGGATCTCTTTATAAGTTGCAATGAAAAAATAGAATATAAGAAGTCA
AGGCTGTAAATGACATGAAAGCCGGAGTCAGATGACCGGTCTGTAACTTATATTATATATTATAA
GAGAAAATAAGATGGAATCTAGCCGGACAAGGAGACAAGGAGGCTATGGGAGTTCTAACCTCCCT
CGATCTGTAACTGCTATTCAAAAATCGTAGTTCTCGGCTTTCTGCTTTGATGAAAGAAGGTTTAT
AGTCTAATCTTAAATAAACCTATATACAAAGGCCTTCAGAAGAGACATGAAAGCTGGAGTAAGAC
AGGAGGTTGGACTTGGACAGCTAGAGCTAGGAGAAAGGGGCGTGAGATAGGCTTCTAGTCAACCG
ATTAAGACTACTACTTCTTTCTAGTAGGCATTAGAGCGATGGACTGAGTCTTGAGAGGAAGCAAG
TGAAAGTTACTACACGAGGAAGTAAAGTGAAGGTGCCTTACCTTC
Done.