123.fas.2.7.7.80.10.50.500.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NC_050850
Parameters: 2 7 7 80 10 50 500
Length:  602121

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7550--7598	21	2.3	21	89	0	80	10	32	20	36	1.86
18532--18563	15	2.1	15	100	0	64	28	12	6	53	1.62
19801--19848	24	2.0	24	100	0	96	33	25	20	20	1.97
21477--21730	127	2.0	127	100	0	508	27	16	19	36	1.93
21720--21978	127	2.0	127	99	0	511	34	16	23	24	1.95
39355--39395	13	3.2	13	96	0	73	31	26	14	26	1.95
47051--47435	127	3.0	127	91	3	589	20	21	24	33	1.97
58560--58940	127	3.0	127	99	0	744	22	16	23	36	1.94
61864--61923	21	2.8	21	94	5	102	18	35	11	35	1.87
65341--65397	30	1.9	30	96	0	105	19	26	19	35	1.95
88789--88838	24	2.1	24	92	0	82	24	36	8	32	1.84
94096--94137	22	1.9	22	95	0	75	38	30	9	21	1.85
124356--124615	127	2.1	127	99	0	513	24	23	16	35	1.95
124605--124863	127	2.0	127	99	0	511	35	19	16	28	1.93
143832--144214	127	3.0	127	97	0	714	36	14	27	21	1.93
144241--144283	21	2.0	21	100	0	86	23	18	23	34	1.96
155262--155297	17	2.1	17	100	0	72	47	27	5	19	1.72
161420--161673	127	2.0	127	100	0	508	36	17	22	24	1.95
161725--161751	13	2.1	13	100	0	54	22	0	37	40	1.54
166070--166325	127	2.0	127	100	0	512	25	18	25	30	1.98
168121--168375	127	2.0	127	100	0	510	25	20	26	27	1.99
168531--168784	127	2.0	127	100	0	508	38	18	19	23	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
169307--169562	127	2.0	127	100	0	512	30	20	25	23	1.98
169658--169911	127	2.0	127	100	0	508	18	20	21	40	1.92
177240--177280	20	2.0	21	90	4	66	19	19	7	53	1.68
180557--180588	16	2.0	16	100	0	64	25	31	18	25	1.98
196892--196945	27	2.0	27	100	0	108	44	11	18	25	1.83
205845--205872	14	2.0	14	100	0	56	7	21	0	71	1.09
216618--216675	28	2.1	28	100	0	116	27	15	20	36	1.93
219773--219804	16	2.0	16	100	0	64	31	6	37	25	1.81
221294--221363	20	3.3	20	74	8	59	25	15	24	34	1.95
228635--228888	127	2.0	127	100	0	508	24	25	17	32	1.97
263247--263501	127	2.0	127	100	0	510	28	25	17	28	1.97
263494--263747	127	2.0	127	100	0	508	31	15	22	30	1.95
265989--266371	127	3.0	127	99	0	748	36	24	16	22	1.94
287299--287361	31	2.0	31	100	0	126	38	33	12	15	1.86
295741--295996	127	2.0	127	100	0	512	21	23	21	32	1.98
295954--296208	127	2.0	127	100	0	510	23	18	26	31	1.97
296441--296481	21	2.0	21	95	0	73	24	7	26	41	1.81
322419--322453	17	2.1	17	100	0	70	57	11	5	25	1.56
324404--324441	19	2.0	19	100	0	76	21	5	36	36	1.76
325931--326184	127	2.0	127	100	0	508	27	21	22	28	1.99
331569--331823	127	2.0	127	100	0	510	29	16	25	28	1.97
331801--332054	127	2.0	127	100	0	508	34	11	18	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333832--333874	18	2.4	18	81	18	54	18	20	25	34	1.96
336578--336634	25	2.3	25	100	0	114	42	22	31	3	1.71
336569--336636	25	2.4	29	76	23	90	42	20	33	2	1.67
347894--348147	127	2.0	127	100	0	508	16	29	14	39	1.88
366549--366802	127	2.0	127	100	0	508	18	20	22	39	1.93
381150--381204	20	2.7	20	97	2	101	21	20	25	32	1.97
383793--383824	15	2.1	15	100	0	64	46	12	6	34	1.67
388171--388425	127	2.0	127	100	0	510	25	18	25	30	1.98
390221--390474	127	2.0	127	100	0	508	25	20	25	27	1.99
390874--390945	36	2.0	36	100	0	144	22	25	41	11	1.86
391508--391888	127	3.0	127	94	2	642	16	25	21	37	1.93
391891--391917	13	2.1	13	100	0	54	33	22	22	22	1.97
407304--407335	12	2.6	13	90	9	50	40	0	21	37	1.54
411032--411153	47	2.6	47	92	0	190	33	10	15	40	1.82
425585--425618	17	2.0	17	100	0	68	47	17	17	17	1.84
426828--427081	127	2.0	127	100	0	508	20	12	36	30	1.90
427024--427277	127	2.0	127	100	0	508	19	22	29	27	1.98
436789--436823	17	2.1	17	100	0	70	40	17	11	31	1.85
437500--437758	127	2.0	127	100	0	518	28	13	18	39	1.89
437705--437960	127	2.0	127	100	0	512	28	17	21	33	1.95
449172--449205	17	2.0	17	100	0	68	23	11	29	35	1.90
451094--451127	15	2.3	15	89	0	50	23	0	50	26	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454029--454282	127	2.0	127	100	0	508	30	20	25	23	1.98
454378--454632	127	2.0	127	100	0	510	18	20	21	40	1.92
470361--470614	127	2.0	127	100	0	508	27	21	22	28	1.99
475999--476253	127	2.0	127	100	0	510	29	16	25	28	1.97
476231--476484	127	2.0	127	100	0	508	34	11	18	35	1.87
478262--478304	18	2.4	18	81	18	54	18	20	25	34	1.96
481008--481064	25	2.3	25	100	0	114	42	22	31	3	1.71
480999--481066	25	2.4	29	76	23	90	42	20	33	2	1.67
492324--492577	127	2.0	127	100	0	508	16	29	14	39	1.88
501164--501188	13	1.9	13	100	0	50	24	8	12	56	1.62
502287--502669	127	3.0	127	97	0	714	21	27	14	36	1.93
504833--504879	24	2.0	24	91	0	76	17	29	8	44	1.78
511180--511435	127	2.0	127	100	0	512	28	25	17	28	1.97
511428--511681	127	2.0	127	100	0	508	31	15	22	30	1.95
518469--518501	13	2.5	13	95	0	57	27	18	18	36	1.94
522838--523091	127	2.0	127	100	0	508	20	28	21	29	1.98
523057--523311	127	2.0	127	100	0	510	24	20	30	24	1.98
535372--535625	127	2.0	127	100	0	508	24	30	20	24	1.98
535591--535845	127	2.0	127	100	0	510	30	21	28	20	1.98
538761--538798	20	2.0	20	85	15	53	26	23	36	13	1.91
547640--548021	127	3.0	127	94	2	644	37	21	25	15	1.93
552035--552080	23	2.0	23	91	0	74	17	23	26	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
583706--583960	127	2.0	127	100	0	510	35	18	10	34	1.86
583938--584191	127	2.0	127	100	0	508	28	25	16	29	1.97
585461--585489	14	2.1	14	100	0	58	34	6	13	44	1.71
585805--586058	127	2.0	127	100	0	508	21	23	22	33	1.98
586016--586269	127	2.0	127	100	0	508	23	18	26	31	1.97
594883--595137	127	2.0	127	100	0	510	36	17	21	24	1.94
595189--595215	13	2.1	13	100	0	54	22	0	37	40	1.54
599534--599789	127	2.0	127	100	0	512	25	18	25	30	1.98
601585--601839	127	2.0	127	100	0	510	25	20	26	27	1.99

Tables:   1

The End!