Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NC_064688
Parameters: 2 7 7 80 10 50 500
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 500
Length: 711456
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Found at i:83224 original size:36 final size:36
Alignment explanation
Indices: 83183--83260 Score: 156
Period size: 36 Copynumber: 2.2 Consensus size: 36
83173 CTTTCTCATA
83183 TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
1 TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
83219 TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
1 TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
83255 TTTCTT
1 TTTCTT
83261 CTTTCTCATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 42 1.00
ACGTcount: A:0.10, C:0.22, G:0.10, T:0.58
Consensus pattern (36 bp):
TTTCTTATTTTTCTGGTTAGAGTCTCACTTCTTCCT
Left flanking sequence: Indices 82683 -- 83182
GAAATCGTTCGGCCGCTTCAAGTGGTGTATTCTCGTACCATACGAGAACTCCACCGGGATGGTTC
TTGTTCGTATATGACATTATGTCGGGTCGGCTAGGCCTTGCCAGATGGGTGCCATAGACAAGAAA
GAAGGAAAGGGAATTGGATTCCTCTTCTCTTTATCTACGTTCTGCAATTAGATAGAACCTGTCGG
TCTGAAACTGAACTCTTAGATTAGTAGGAAAGGCAGTGAGCGGCGCACAGGTTCGATTCCCGGCC
GTGACATCAATGACGAGTACGAATTAAATGTGTTAAACATATTGCTAGCATGATTTGCCCCTCCA
AGCATAGTCCAATATCCCATTCACTCTAGTCAGATAGGATCGTAGGCGATCTGACAGTTACCGAC
TCTCCGGCTCCATTTCGGTGCACGATTGGAGAGTTCATTGGGCCCGCCGCTTTCATGATTCACTC
ACTGACTAAAGTAAAGAAAGAGGCTCTTTTCTCTTCTTTCTCATA
Right flanking sequence: Indices 83261 -- 83760
CTTTCTCATATTCTCCCGGCTTTTCCTGTCGAAATGAAATAGAATAAGATAAGAGGAAGAAGGTG
AGGCTACCAGCTTTGGTAGGAGAGAAAAGTCTCAATTCAATCTAGATATGAATTGAGACGAAAGC
TTGACAAGCCCATTCATTTAAGAAGGAAAGCGAGAAGTTAGTCGAGCACAACCTTCCAATTAAGC
AAGGGGAAAGCCCCGTGAGCAGCCACCAAGAAGAATGGAACCGTTGGTCTAAGGATCTTCACTAT
TGGGCTTTTAGCTTATGAGATCCGGGGTTGGGGAATTCCCCGATCCAGTCCTTTCTTGAGTACTG
GAGTTTAGTTTCACAATCCAGATGCGAGGGAACCATTATTCAAGAAATCCTGCCTTTGATAGTTA
TACTAGTTCCATCCTTGTGCTGGGCGGAGGCAAGGCGGATAGAAAGAAAAGAAAGAGTAGGCCTT
ACCCTTTAGCTAGCCCCTAGGCGAAGGAAAGAAAGAGGGGTAGCT
Found at i:100681 original size:28 final size:28
Alignment explanation
Indices: 100649--100766 Score: 236
Period size: 28 Copynumber: 4.2 Consensus size: 28
100639 CGAGTGACCA
100649 CCCCTCCCCCTATGGTCGAGCTGCTTCG
1 CCCCTCCCCCTATGGTCGAGCTGCTTCG
100677 CCCCTCCCCCTATGGTCGAGCTGCTTCG
1 CCCCTCCCCCTATGGTCGAGCTGCTTCG
100705 CCCCTCCCCCTATGGTCGAGCTGCTTCG
1 CCCCTCCCCCTATGGTCGAGCTGCTTCG
100733 CCCCTCCCCCTATGGTCGAGCTGCTTCG
1 CCCCTCCCCCTATGGTCGAGCTGCTTCG
100761 CCCCTC
1 CCCCTC
100767 TCCTGACAAG
Statistics
Matches: 90, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 90 1.00
ACGTcount: A:0.07, C:0.48, G:0.20, T:0.25
Consensus pattern (28 bp):
CCCCTCCCCCTATGGTCGAGCTGCTTCG
Left flanking sequence: Indices 100149 -- 100648
GTGAAAGTCTTAAAAAAGTGCCCTATCGCGTAAAGCCAAGTATGTGTGGCCCGTCTTCGTGATTT
CCCCCCTACACGCTTACCCTCTCGCGGATGTAACCCTTTCCCTATCGGTCGAGCTATTTCAAAAG
CAGGTTCGCCAGGACCTACTAGTGATAGAAAGACGGATAATGTTTAATGAGGGTTGGAGACAGGT
TTCGAGTCGCCCAATTCAGTTGTCACGGTTTAATGGTGGTAAAGTCCAGAGGTGGGTCTCGACTG
ACTTTCCTTTAAGAGGGTGCCTTTTTTTCGTAGCAGAAAGAGGGCTTGGGCAACTAAATCACGTT
CGTACGAAAACGAGTTGGAATACTATTTCCGATAGGGAAGCCGGGAGCGAAAGCCAACAGGCGAG
GGTTTTGAATTCCAGAGTCTCAGCCGTAAGGGAACGAACTACATAGGATTCTCCAGCTTTTGATC
TTAGAAGGCGACCCAAGGGAGGGCTGTGACTTATACGAGTGACCA
Right flanking sequence: Indices 100767 -- 101266
TCCTGACAAGGTCAGTCTCAAAGACCCAGACTCTTTCGAATCTGTTTACAACCCACTACTCTTAG
AGGTCTGTCGTAAACCCTTATACGAGCAACTCCGTGCCTTGGACTATCGGTCACGCCTCTTGCTA
AAGTAAAGGCCATCTCTATCTACTGATCGGGGCTCTCTCTTTACTACCAAAATGCCCTTTCTAGT
TTTTGATCTTGGCTCATCAGAAGGCTTAGCTATTCTCTCTCTTATTTATGTAAATTCATTAGAAA
GACCCGTACCCTATCCCTCTAGCTGCCGGCTTGGTGTGAAGTGATCATAGCCTGGGCTTAGTGGA
GTCCTTACGATTTTATGAAAGATCGAATGCGACTGGGATCACGGAAGGCTAGCGTTATGCTTTAC
TCTACCTATCGAATCTTCAAAGCGTAAGAACTGAGCTACTTCGTTCCTTTTCATCTTTAATAACG
TGTTCAGTTAGAAGAGCAAATCCCCCTCTCCAACCCCCCAAGGGG
Found at i:102045 original size:30 final size:30
Alignment explanation
Indices: 102009--102069 Score: 122
Period size: 30 Copynumber: 2.0 Consensus size: 30
101999 ACATTTCTTT
102009 TAGATAGAAAGGTGTTCTGACTCTATTGGA
1 TAGATAGAAAGGTGTTCTGACTCTATTGGA
102039 TAGATAGAAAGGTGTTCTGACTCTATTGGA
1 TAGATAGAAAGGTGTTCTGACTCTATTGGA
102069 T
1 T
102070 CAAGTCATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.30, C:0.10, G:0.26, T:0.34
Consensus pattern (30 bp):
TAGATAGAAAGGTGTTCTGACTCTATTGGA
Left flanking sequence: Indices 101509 -- 102008
CTATCTATCCGCGCCGCGAGCTGGCAGGTAGGGGCTTATCTATGTGATTCGCTACGCTTGCTTGC
GCCTATCGGCGGGCTCTATTGCCTGCCGGTTAGCGAAACTTTGACGGTAGCACGAATCGCTACGC
TTCGCTTGTTTCTATATGATAATATGCACCTACCTTGCTGCGCTCCCTGCCCTGCGGAGCAAGAG
AGTGAAGAACGAATGATCCTCCAAACAAAAAGAGTGATCACGTCCGACGTGAGCGAGTGAGTGAA
AGGCGTGGCAAGAGAGCGAGTTCAACTCGCGAACGATCAGCAAGTGAAGTACCGATCCTTTTGCG
CCAGTTGCGAGACTGGTACTTGACGGCTCACGAGCATAGACTAAGGTAAGGTTGTCCATCACTTA
TTTTCTTTCTAACCATAAGAAGACTGAACGCCCAGCTTCGCGGAGCAGCTCTCTCCCCAGCCCAC
AGCATAGTGTGGAATCTGGATCGTTTCATCGAGCAACATTTCTTT
Right flanking sequence: Indices 102070 -- 102569
CAAGTCATAACCTACGCCTTCTACTAGTATACTACTATGGAGAGACTAAGCTCTATTTCAGAGAT
TGGGCTCTCTTACTGTGCTCCGCCCCTACTAGTAAGAAGCTCTTCCCGAGCCAGGTTCCCTGGAT
CTACGTGTTCCGGGGAGGGCCTAAATGGATGAATTAAGAGGCGCGCCCAGGGGCTTCAAGAGCTC
TTGCTCTGCGTATCCTCCTACTTCTTATTCTGAGGATGAGGAATCATACGAACCGCCTACTCGCC
CTACCATTCATTCTAAAAAAAAAAATGAAAGCTGCTCGCCTTCACTAAGAAAACAATCCCTCCCC
TTCTGTTACCTATTTTGACTCATATCTTCGGTATACCGTGATACAAGACAAGCACAGGAAAGGTG
CTTCTTCCAAGCGGTCCCTCGCCCTATTCTCTCTCAATTGCCTATCCTTTCTAGATGAGGGGGAG
TACCTTAGCAGTAGCTTCCAACACTTAAGATTGACCTCCGTGAGT
Found at i:208017 original size:14 final size:14
Alignment explanation
Indices: 207998--208025 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
207988 TCTTATCTTA
207998 TGAGTTAAAGAAAG
1 TGAGTTAAAGAAAG
208012 TGAGTTAAAGAAAG
1 TGAGTTAAAGAAAG
208026 ATGCTAGGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.29, T:0.21
Consensus pattern (14 bp):
TGAGTTAAAGAAAG
Left flanking sequence: Indices 207498 -- 207997
AAATGCGATCTTTTCCGACAAGTCTTTTTTCATTTAGAAGGAGGCCCCTTTTGCTTTAGCACAGG
GCTAGAAAGAAGGCTGTGATCTCGACTCAGATGGCTTTTCACTCACGCGATATTCCTCATATGTC
AAGGGCTGGTAAGGTTTGATGATGGGAAGAGACCTCTCGAGAAATGCAGCTGCGATTGCCACTGT
CTGTGTCGATAGCAGAAAGTACGACTGGAACCTAGACTGCTAACGTTTATAAGACTCCTTCCTAT
GTCGGAGACAGAACCCCTTGTCTTCAGTCGCTATCCCTGGGTGGTACGCAGAAGTCACGGGTCCG
TCCCGCCTCTCGTACACATACAGAAAAGAAAGAGACGGTTTGGAACCGGCCCAGGCCCCAACCCC
AAAGAGAAACAATTCGAAGAAGGGGCCTCGAAAGAAGCGCACTCTCTGGTTTGTATGTGTATGGA
TAGGGAAGATTTGTAAGTAATTTAGACTCTTCTTATCTTATCTTA
Right flanking sequence: Indices 208026 -- 208525
ATGCTAGGTTAATGACTAGGGCCGGTCGTATAAATCCTTGTTCTTTTGTTCTGGGAAAGCGAAAG
CCCGCACCTAAGAAGAGAGAACCTTCCTGTCCTTTAGTTCGGAGATAGAGGGAGCACGTTAGGGC
GGATCAGAAAGAAGGAACTGAAACCTAAGTTCAATGCAGAATTCTTTTTGCGAGTGAAGTGAAAG
TTCAGTTGACTATAGCTTATTGGCAAGCGGGAGGTACAAGTGTCGCAGATCAAATTGTCGGCAAG
CAAGCTCAGAAGAAACCGACTTTCCTTTCCGGCTAGTGGTAGCGGTTGAGAGCGAAGCGAACCTT
TTCTTAATGTAATGTTCATTACCTTCTCCCCCCTTTATTTCCATTCATATTCATTCCTTTCAGGA
TCAGTCGTGGTCTTACAAACTATACCGATGGTATGAACAAATCCCTTTCTTCATACAAATGCGTA
AAAGAAAGATGTTAGCCGCACGCCGTCTACCGTTGAGTTAGCAAC
Found at i:225099 original size:24 final size:24
Alignment explanation
Indices: 225066--225113 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
225056 CCCTCCCCTT
*
225066 AAGATTCCTCACCGCCTGGGTATG
1 AAGATACCTCACCGCCTGGGTATG
* *
225090 AAGATACCTCACTGCCTGGTTATG
1 AAGATACCTCACCGCCTGGGTATG
225114 TTTGCAAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.27
Consensus pattern (24 bp):
AAGATACCTCACCGCCTGGGTATG
Left flanking sequence: Indices 224566 -- 225065
AGACAAGAACTACATTGCTATACCTGAATCAGTTTGACTCAATGCTTGCACTTAGACCTTTCCCC
CAAGCTTCCTTCTATGCTGCCAGAAGCGGAGAGGAGGGTTTTCACAACACTTAAACCGAAAGAAG
AAATGCCCTAGCTCAGCTTCCTAGCATGACACATCAGCTACGCCATCAGAGACTGAATTAGAGCC
TGGAATGATCCTCCACTTGCTAGTCATGAAATATCACCGCTCCGTCTTTCGTTGCTCTCTTAAGC
TGCTTTACGAGTGCAACCAAGTTCAAGAAACTGCTAATTAAGATACGATGCTGGTATCTATCTAA
AAGTCAATATCTGTGAGAAGCTTCTTTCTCATAAACATCCGAAGCAACGAGAGATGCCCAAAATC
CTATTTCCTCTTTCCTCCATAACCTTACCAATACTCCCTCGCCTGGAATTCTCCCAGTAAGCTGA
TCAGACACAGCCCTGGACTTCCCTTCACTACCAACCCCTCCCCTT
Right flanking sequence: Indices 225114 -- 225613
TTTGCAAGTTGCAGAAAGCATTGTATGGTCTTAAACAGGCATCACGCGCTTGGTATGATAAGTTT
TATAGCTTTATAATCAGTAAAGGCTTTCTTATGAGCCGTAGTGATTCCTCGTTATTTATTCAAAC
TAACAGTTTGCGAACTACAATTCTTGCGGTTTATGTGGATGATATTATTATAACTGGCAGTGATA
CCTCTTATATCTCCACTCTAATCACTGAATTAAGTGCTCCGCTATAAAGAACCTCGGGAACTTGA
ACTATTTTCTTGGCATTGAGGTACTCAAGACAAGAATGATCGTGGACTTTTTTTAACACAGCAAA
AATATGCGTTGGATCTCCTCCAGAGAGCTGCTATGCTGAATTGTAAGCCCTGCTCTTCTCCAATT
AACTTTAAAATCAGTCCTCTGCTGCAGTCTCTTCTACTCCATTTCATAATCCATCTCTGTACAGA
AGCATCGTTGGAGCCCTGCAGTATATTACAAGACCTGATTTGGCC
Found at i:239494 original size:19 final size:19
Alignment explanation
Indices: 239443--239495 Score: 51
Period size: 19 Copynumber: 2.9 Consensus size: 19
239433 CATGGATGCG
239443 AACTTTAACAAAGAAC-TT
1 AACTTTAACAAAGAACTTT
* *
239461 -A-GTTAATTAAA-AACTTT
1 AACTTTAA-CAAAGAACTTT
239478 AACTTTAACAAAGAACTT
1 AACTTTAACAAAGAACTT
239496 AGTTAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 9
0.67 0.10 0.23
Matches are distributed among these distances:
16 7 0.27
17 6 0.23
18 4 0.15
19 9 0.35
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.32
Consensus pattern (19 bp):
AACTTTAACAAAGAACTTT
Left flanking sequence: Indices 238943 -- 239442
CAATCCCATCCTTCTCGTTCGATCCGTGCTTTTAACGAATTACCACTTATTCTGTGGCCTCTAGC
CTTCTACCCCTCTCCTGACGTCGAGCCGCTTCGCCCCTTAGTCCAGAGCAGGAGCAGCGGATTCG
CCTACTTCAAAGTCAATAATCCGGATTTCCCCTCTTTCCTTCAAGCAAGGCTGACTTCATTAGCT
ATAGGTAGACTTCACACAAATCCAATCGTACAAGCAAGTAGATCAACATCAACGTTGAATAGTTT
CATTCCATCTAGGGTTCCCTGCAAACTTCTTATATCTACCGGGGCAACAACCTCTTCCTTGAAGA
CCCTGTATTGCTTGTCTTTCTTCTCCTAGTTACTTCTTGGATTCGCCGCAAACAGATGACTAAAA
GCGCTTACTAAGCATAGTCCCGGAAATTCCAATGCAATTAGCAGCGAATCTTGCACTTGAGGAGC
AGATCTCTATCTGTAAGAGCAGATTAGGCGCATGCCATGGATGCG
Right flanking sequence: Indices 239496 -- 239995
AGTTAATTAAAAGGCTCTGCGCAGCAATTTTCCTCGTAGGCAGAGGTTGGACAGAGACTCAAACA
TATAAGGCAAAGGTGTGCAGGAAAGGCACCCGGACTTATTTCCAATCGCATATAGAGTGAGCGAA
GCACGGGTAGATCCCATTACAGATTGAGTAGGGGGAACCCCAACTAAAGTAGCAAAGAGAAAGTC
AGCAGCAATTGCTAATCTCTTGATCTATGCACTTTCAATAGCACGCAGAGGTGAGGATCGACTAA
GCATTTCCCTCGACATAAAGTAGGAGAACTCGCCCAAAGGGAACATTTAGAGTTGTTCCAGAAAG
GTCCGCAGGTGAAAGAAAAGAGACTGGCTCTCTCTATCTATTATACTTATACGCAATATCTTGAA
AGGCGAAGAGTGACTACTTCTTTCTGCTTGTATTGTACTTCCTGTTCCTGTAGTGATACAGGACT
CGTGCAAGAGCGCTTACGGCAGGAGATGAGGCTTAGAATCCAGAT
Found at i:240750 original size:27 final size:27
Alignment explanation
Indices: 240712--240791 Score: 125
Period size: 27 Copynumber: 3.1 Consensus size: 27
240702 ACTAATGTCG
240712 TTCTCTGGCTATGCTATGCTGGAGGGA
1 TTCTCTGGCTATGCTATGCTGGAGGGA
240739 TTCTCT-G----GCTATGCTGGAGGGA
1 TTCTCTGGCTATGCTATGCTGGAGGGA
240761 TTCTCTGGCTATGCTATGCTGGAGGGA
1 TTCTCTGGCTATGCTATGCTGGAGGGA
240788 TTCT
1 TTCT
240792 GAAGTCTTTG
Statistics
Matches: 48, Mismatches: 0, Indels: 10
0.83 0.00 0.17
Matches are distributed among these distances:
22 21 0.44
23 1 0.02
26 1 0.02
27 25 0.52
ACGTcount: A:0.14, C:0.19, G:0.33, T:0.35
Consensus pattern (27 bp):
TTCTCTGGCTATGCTATGCTGGAGGGA
Left flanking sequence: Indices 240212 -- 240711
TGATTACCTCCTTCATGCCCGTGGTCTGCTTTGCTCGTGGCTAGGGGAGCTTTCTTCTCTTCAGA
CCAAGAATATCGTATGTGATGTTAGAGAGCATGCTCAGGCTAGTTGGCTGAGGATTCTCCGATAA
CGAATTCTGCTTCTTTACCTGGAGCGGAAAAATGGTTAAGGAATATCTCAGAGCCGATGCGCGAT
CTCCGTGCTTTCCCACTCCGGGGGAGCGGGGAAGAATCCGCATGGGGGGTGGACCGGTACAACTC
AGAAAGAATAAAAAGAGGAAGCCCTATCGCCCGAGAAAAGGGGGTTTAACAAATGTTGGGCCACT
GACTTCGAAGCAAGAAGGATTTTGAGTCCCTTGCTCCAGAACCAGGATTTTAAGTCCTGTTGCAT
CTTCTCTCGGCGAAAAAAAGGTCCTGTGTTAAGCATATAGCTCAACCATAGTGGATGATGAAGAA
AGTACTATAACAATAAAGATCACCTTTAGAGTAAAACTAATGTCG
Right flanking sequence: Indices 240792 -- 241291
GAAGTCTTTGGGTAATGGCACTAAGCTTAATACACTTAGGAAAATCCCACGATAGAGAATGACCT
TCACAGGAACAAAGCTCTATTCAATCCAAGGATAGAGACCTTAAAAGGAACAAAGCTCTATTAAA
TGCCGGTCTCCTGCTGTATGTTTTTATTTTTATTCTCTTACATAAAATTAAGGACATATTGTCCG
AAAACCTCTCATAGCAGGTGTTAAATAAGACTGATGGTCCAGGGTAGCGACACCTGAAATCTTAT
TAATAAGCTCAGGGTTTCACTCAGATCTTTGTGTGGCAGAACGCCAAGACAAGGGTTGCGACAAC
TGAAATCTTATTAATAACCTCAGGGAAAGCCAGGGTTTTACTCGGAAAAAGTACTATAACAATAA
AGAAAATATGTGCAACAAACAATGGATTACTATGTCATTGATAGATATAGAGAGAAAGGAGGAAG
AAAAAAAGGACCTTTTTTCCGGAACTTAAGGTGCGCCCCGCCCGG
Found at i:240752 original size:22 final size:22
Alignment explanation
Indices: 240724--240775 Score: 104
Period size: 22 Copynumber: 2.4 Consensus size: 22
240714 CTCTGGCTAT
240724 GCTATGCTGGAGGGATTCTCTG
1 GCTATGCTGGAGGGATTCTCTG
240746 GCTATGCTGGAGGGATTCTCTG
1 GCTATGCTGGAGGGATTCTCTG
240768 GCTATGCT
1 GCTATGCT
240776 ATGCTGGAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.13, C:0.19, G:0.35, T:0.33
Consensus pattern (22 bp):
GCTATGCTGGAGGGATTCTCTG
Left flanking sequence: Indices 240224 -- 240723
TCATGCCCGTGGTCTGCTTTGCTCGTGGCTAGGGGAGCTTTCTTCTCTTCAGACCAAGAATATCG
TATGTGATGTTAGAGAGCATGCTCAGGCTAGTTGGCTGAGGATTCTCCGATAACGAATTCTGCTT
CTTTACCTGGAGCGGAAAAATGGTTAAGGAATATCTCAGAGCCGATGCGCGATCTCCGTGCTTTC
CCACTCCGGGGGAGCGGGGAAGAATCCGCATGGGGGGTGGACCGGTACAACTCAGAAAGAATAAA
AAGAGGAAGCCCTATCGCCCGAGAAAAGGGGGTTTAACAAATGTTGGGCCACTGACTTCGAAGCA
AGAAGGATTTTGAGTCCCTTGCTCCAGAACCAGGATTTTAAGTCCTGTTGCATCTTCTCTCGGCG
AAAAAAAGGTCCTGTGTTAAGCATATAGCTCAACCATAGTGGATGATGAAGAAAGTACTATAACA
ATAAAGATCACCTTTAGAGTAAAACTAATGTCGTTCTCTGGCTAT
Right flanking sequence: Indices 240776 -- 241275
ATGCTGGAGGGATTCTGAAGTCTTTGGGTAATGGCACTAAGCTTAATACACTTAGGAAAATCCCA
CGATAGAGAATGACCTTCACAGGAACAAAGCTCTATTCAATCCAAGGATAGAGACCTTAAAAGGA
ACAAAGCTCTATTAAATGCCGGTCTCCTGCTGTATGTTTTTATTTTTATTCTCTTACATAAAATT
AAGGACATATTGTCCGAAAACCTCTCATAGCAGGTGTTAAATAAGACTGATGGTCCAGGGTAGCG
ACACCTGAAATCTTATTAATAAGCTCAGGGTTTCACTCAGATCTTTGTGTGGCAGAACGCCAAGA
CAAGGGTTGCGACAACTGAAATCTTATTAATAACCTCAGGGAAAGCCAGGGTTTTACTCGGAAAA
AGTACTATAACAATAAAGAAAATATGTGCAACAAACAATGGATTACTATGTCATTGATAGATATA
GAGAGAAAGGAGGAAGAAAAAAAGGACCTTTTTTCCGGAACTTAA
Found at i:326085 original size:13 final size:13
Alignment explanation
Indices: 326067--326092 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
326057 TCCTGCGAGC
326067 TTAGTTTATGAAT
1 TTAGTTTATGAAT
326080 TTAGTTTATGAAT
1 TTAGTTTATGAAT
326093 AATGCAGCAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTAGTTTATGAAT
Left flanking sequence: Indices 325567 -- 326066
GGAGACGAGACGTACGATTGAAATCACGTTTATGAAAGCAATGGCTCTTAGCCGACTAAGATGAC
CACATAGTGGTATACTACTTCACGTAATTCACGTAATTTTCCACTTTACCACTATCAGACTAGAC
CGGAGCTTTTGAATAGGGCTTTGAGGATAAAAAGACTAGCCGGAAAGCCATTCCCCTGCTTGCGA
CCGCTGGACCACTTGGAATGATGGAAAAGAGAGTACAGAGAGCATTCCATATGGGGCTTCCCATC
GGGGCTACCATTTTCTCAGGCCCGATCGAGGTTCTCTTCTTTCCCGTTCATATGAAAAAGACCTG
CAATGCTAATCTCGTTAGGCCACCCGAACCCATCGAACCTTTGACAGGAGGAGTTAGATAGGTGA
AAAGATAACAAGACAACACCTGCCTATATCGCTCCTGTCTAAGCGAGCGAGACTTTTTCCATTGA
TATTTCCATATCATGTAGCGAGACTCCACTTTAGATCCTGCGAGC
Right flanking sequence: Indices 326093 -- 326592
AATGCAGCAATCGTAGGGTCGACAGTACCGGTGGGCTTTGAGCTACCAGAGCAAGGAGATAGAGC
TTGAGCTTTTCCTTCATGGACCAAGGCGACTCTCGTTAGCTCTACTTGGGCTTAGTGCGATTCGA
AACTGGGATTTTTTCTAGCCCGAAGAACGAACAAAGACAACAAGGAGCGACTGATAAGGAGCGGT
TCAAGCTTTCTGGCCATTCCAACTGCCTCCATTATTCTACTTTTTTTTTTAAGCGCCATAAGCAG
CCAAGCATAGTGGTTCGCTCAAGCAATGGAGTTTGCGAAACTTCCGTTCCGGTAGTCCTTAACGC
AAGGAAATAGTAAGATCAGACCCTCGAATTCGATTACACACAAGCTGCCAAGTAAGCTCTCGAAA
GAGCTACCTCAGAATGAAAGCTACATCAATCCAAAGGAATTCAATCCGTTATATCTCCACCTCGT
AAAGCCGTAACAGCATCGACTCATTAATGCGCCCTCAAGGGGCAG
Found at i:372960 original size:19 final size:18
Alignment explanation
Indices: 372938--372991 Score: 51
Period size: 19 Copynumber: 3.0 Consensus size: 18
372928 AAAAAAAAAT
372938 GGATTATATTCTAATTATA
1 GGATTATATT-TAATTATA
*
372957 GGATTCTA-TT-ATTATA
1 GGATTATATTTAATTATA
372973 -GATTATATTATATATTATA
1 GGATTATATT-TA-ATTATA
372992 TATATAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
15 6 0.21
16 7 0.24
17 2 0.07
18 1 0.03
19 13 0.45
ACGTcount: A:0.37, C:0.04, G:0.09, T:0.50
Consensus pattern (18 bp):
GGATTATATTTAATTATA
Left flanking sequence: Indices 372438 -- 372937
AAGTAATCAAGCAGCAAGTTCAGTCTTTTCAGGGCGAGCTGACCGCAGAAACCGTAGACTTCCAT
GATGAACCCACCTTAGCCACCTCCGATCAGACAGAAAGATGCGATCGTTAGAGATTCGACGATTC
CCGGTTGGACCTATTCAAGCGATTGAACGAGATACTCGACAACTAGAAAGACGCACTTGAATACT
GAATGCTATGAGGAGAAAGAATGACTATCACCAACCATAAAGACGATAAAAGAAGGCACTCCCGT
TCCCCCGAAATCATCTTCTGTGCGTGGTTATCCAATCATGATGTGGTAGGCTTAGTAGGGCTCGA
ACCTACAATCTAACCGTTATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTACGGATCT
CTACATGCAATTCGCTCACTTCGGGAAGAGCGGACGGAATGCGACGGGGAGGCCTTTGCTCTATC
TGCTTCTTCCTCTTCTCAGGAATGAAGAATTAGATAAAAAAAAAT
Right flanking sequence: Indices 372992 -- 373491
TATATAATATTCTATATCTATTATTAATATAATATTCTATATCTATTATTAGAATTTAGAATTAA
TAATATAATTAAGCAAGCGGCCCTTTTGCGACTCAAACTGCCGGTACGCTTTCCGGCTCGCAACG
ACTCAAACGGGCGGAGGCTCTCTATTTGCTTGCACTGCCGGCTGTTCGCCTTTAGTTAGAAGTAG
AAGTCGCTCTTTGCCCCACACTTCTAAAAAAGTATGGATTAATTCAGTAAGAAAAAAAACTTGGT
TACGGGAACCGAAGGTTAGGCCGACTACTTACTTTCTCCTTACCCTTAACAGGATTGTCTCCTAC
CGATCGAGGAAAGGCTTAGAATCCATGCTTTGACCGGTAATGTCCAATCTAAGAACGTCTTGTGC
CTTTTCCTGGGCCCCCTTCATTCTGACTTAGCTAATTCAATTCTTTCTATTTCTAATGGGCTTAT
ACTTTTTTCTATATCCCCCGAGAAAAGAAAGTCCTGCTATATCTA
Found at i:372981 original size:15 final size:16
Alignment explanation
Indices: 372951--372983 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
372941 TTATATTCTA
*
372951 ATTATAGGATTCTATT
1 ATTATAGGATTATATT
372967 ATTATA-GATTATATT
1 ATTATAGGATTATATT
372982 AT
1 AT
372984 ATATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.36, C:0.03, G:0.09, T:0.52
Consensus pattern (16 bp):
ATTATAGGATTATATT
Left flanking sequence: Indices 372451 -- 372950
GCAAGTTCAGTCTTTTCAGGGCGAGCTGACCGCAGAAACCGTAGACTTCCATGATGAACCCACCT
TAGCCACCTCCGATCAGACAGAAAGATGCGATCGTTAGAGATTCGACGATTCCCGGTTGGACCTA
TTCAAGCGATTGAACGAGATACTCGACAACTAGAAAGACGCACTTGAATACTGAATGCTATGAGG
AGAAAGAATGACTATCACCAACCATAAAGACGATAAAAGAAGGCACTCCCGTTCCCCCGAAATCA
TCTTCTGTGCGTGGTTATCCAATCATGATGTGGTAGGCTTAGTAGGGCTCGAACCTACAATCTAA
CCGTTATGAGCGGTACGTTTCAACCAATTAAACTATAAGCCCCTACGGATCTCTACATGCAATTC
GCTCACTTCGGGAAGAGCGGACGGAATGCGACGGGGAGGCCTTTGCTCTATCTGCTTCTTCCTCT
TCTCAGGAATGAAGAATTAGATAAAAAAAAATGGATTATATTCTA
Right flanking sequence: Indices 372984 -- 373483
ATATTATATATATAATATTCTATATCTATTATTAATATAATATTCTATATCTATTATTAGAATTT
AGAATTAATAATATAATTAAGCAAGCGGCCCTTTTGCGACTCAAACTGCCGGTACGCTTTCCGGC
TCGCAACGACTCAAACGGGCGGAGGCTCTCTATTTGCTTGCACTGCCGGCTGTTCGCCTTTAGTT
AGAAGTAGAAGTCGCTCTTTGCCCCACACTTCTAAAAAAGTATGGATTAATTCAGTAAGAAAAAA
AACTTGGTTACGGGAACCGAAGGTTAGGCCGACTACTTACTTTCTCCTTACCCTTAACAGGATTG
TCTCCTACCGATCGAGGAAAGGCTTAGAATCCATGCTTTGACCGGTAATGTCCAATCTAAGAACG
TCTTGTGCCTTTTCCTGGGCCCCCTTCATTCTGACTTAGCTAATTCAATTCTTTCTATTTCTAAT
GGGCTTATACTTTTTTCTATATCCCCCGAGAAAAGAAAGTCCTGC
Found at i:373013 original size:25 final size:25
Alignment explanation
Indices: 372985--373042 Score: 100
Period size: 25 Copynumber: 2.3 Consensus size: 25
372975 TTATATTATA
372985 TATTA-TATATATAATATTCTATATC
1 TATTATTA-ATATAATATTCTATATC
373010 TATTATTAATATAATATTCTATATC
1 TATTATTAATATAATATTCTATATC
373035 TATTATTA
1 TATTATTA
373043 GAATTTAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
25 30 0.94
26 2 0.06
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (25 bp):
TATTATTAATATAATATTCTATATC
Left flanking sequence: Indices 372485 -- 372984
GAAACCGTAGACTTCCATGATGAACCCACCTTAGCCACCTCCGATCAGACAGAAAGATGCGATCG
TTAGAGATTCGACGATTCCCGGTTGGACCTATTCAAGCGATTGAACGAGATACTCGACAACTAGA
AAGACGCACTTGAATACTGAATGCTATGAGGAGAAAGAATGACTATCACCAACCATAAAGACGAT
AAAAGAAGGCACTCCCGTTCCCCCGAAATCATCTTCTGTGCGTGGTTATCCAATCATGATGTGGT
AGGCTTAGTAGGGCTCGAACCTACAATCTAACCGTTATGAGCGGTACGTTTCAACCAATTAAACT
ATAAGCCCCTACGGATCTCTACATGCAATTCGCTCACTTCGGGAAGAGCGGACGGAATGCGACGG
GGAGGCCTTTGCTCTATCTGCTTCTTCCTCTTCTCAGGAATGAAGAATTAGATAAAAAAAAATGG
ATTATATTCTAATTATAGGATTCTATTATTATAGATTATATTATA
Right flanking sequence: Indices 373043 -- 373542
GAATTTAGAATTAATAATATAATTAAGCAAGCGGCCCTTTTGCGACTCAAACTGCCGGTACGCTT
TCCGGCTCGCAACGACTCAAACGGGCGGAGGCTCTCTATTTGCTTGCACTGCCGGCTGTTCGCCT
TTAGTTAGAAGTAGAAGTCGCTCTTTGCCCCACACTTCTAAAAAAGTATGGATTAATTCAGTAAG
AAAAAAAACTTGGTTACGGGAACCGAAGGTTAGGCCGACTACTTACTTTCTCCTTACCCTTAACA
GGATTGTCTCCTACCGATCGAGGAAAGGCTTAGAATCCATGCTTTGACCGGTAATGTCCAATCTA
AGAACGTCTTGTGCCTTTTCCTGGGCCCCCTTCATTCTGACTTAGCTAATTCAATTCTTTCTATT
TCTAATGGGCTTATACTTTTTTCTATATCCCCCGAGAAAAGAAAGTCCTGCTATATCTAATGTAT
TTTTTCCAGGACCGCTTGCTTCTGATCGCGCTTTAGAGTCTGTGC
Found at i:388766 original size:13 final size:13
Alignment explanation
Indices: 388748--388773 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
388738 AAGGAGCTAA
388748 TACAGAATACGAG
1 TACAGAATACGAG
388761 TACAGAATACGAG
1 TACAGAATACGAG
388774 AAAACTCCTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.23, T:0.15
Consensus pattern (13 bp):
TACAGAATACGAG
Left flanking sequence: Indices 388248 -- 388747
TCGCCTCGGTTCTTGGCTTTGATCCAATTCCGAAGCTCGTTTGCTCACTAGCCGATGTCATTTTC
AATTGACTTAGTTAGAAAAGTATGGGGATACCGTACCACTTTAAATTAAACAAGCGCCAGCAAAA
TGGAGCTTACCGCGCTGAGTTACGTCGTAGGCGAAGCTTTCGATTCGACAAATGAATGGTTGGTG
CTTCCCTTCTTTAGCCTATTTGCCTATTTGGTAGATTCAATTAGGGCTAGCTCAAAGACTGGCTA
ATCCCAATCCGATGGATCAACTCTTTCGCGTCGCTTAACGACTTGTAACTCTGGCGAGTACCGAT
GCTCCAAATTGGATTACCTAGCGCTTGGGTGAGATGTTCGACAAGAGACTAAGGACCTTTTAGGT
GGGAGTTCCATCCGAGACGGACTGGAATCACCGGCTCATACTAGAGCTTCCGGACGAACTCAAAA
GCGAAAGATCGAAGCCTTACCTTATTCATTCGTGGAAGGAGCTAA
Right flanking sequence: Indices 388774 -- 389273
AAAACTCCTTCGAAAACGAAATCGGAAAGAGAGATGCTTTCAATCCAACAATTGTAATTAGTAGC
CGACCTTTAATTGAAATTGACCAATGTTCGTCTATCGGCTCAAGTCTTTCCAGAAGCCGGAAGGA
AGAGCGCTTTTTTGCTTTTCGTGTGATCACTTTCCATAATGGTTTCCTACCGAAGGTAAAAAGGC
AAACAAAGGATACGGGGACCCAAGCTCTTATACGTGAAGTGCTTTCCGGCAAACTTAGTATCGAG
AAAATCCGTTACCGCTCCCGAAGTCAATTTACCCTCAGAGTCAGAGAAAGTAAATGCGTTTACAC
GTACGCATACATAAACAAAGTAGGGCCCAGGAAAGCCATTCCTGCTACAGTACAGAAAAATGCAT
TCGACCACCTGAACTTGAACGCTCTCTTTCTTTTTAACGTTCTAACTGAACACACCTTGAAGAGG
GAATCATCGAGCGTAAAAGCACGCTTCAGAGCATGTGTGCCGCAT
Found at i:392660 original size:19 final size:19
Alignment explanation
Indices: 392636--392674 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
392626 CAAAGAGCTG
392636 TTTTCTTTCTTGCTT-TGTT
1 TTTTC-TTCTTGCTTCTGTT
*
392655 TTTTCTTGTTGCTTCTGTT
1 TTTTCTTCTTGCTTCTGTT
392674 T
1 T
392675 GGGCTTGCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 8 0.44
19 10 0.56
ACGTcount: A:0.00, C:0.15, G:0.13, T:0.72
Consensus pattern (19 bp):
TTTTCTTCTTGCTTCTGTT
Left flanking sequence: Indices 392136 -- 392635
TTCTCCATCCGCCCGCCAGCAGCAGGGGGGTTCGATTCCCGTTATACGCGATGTGGCGAAGAAAA
GCGCTTGTTATTTGCGGAAAGGAAGAAGTCATCCCTCTTGCTGGAGGAAACTACCTTTCTATCCT
TCTCCTGCCCCTCTCAGTTGGAAAAAGGGCTTTCGACTTTCCCTAATCTCCTTTGCTCCCTAATC
CATTCCCGGTGCCATTCAACTATCTGACAATAGAGTATCTAAGTCAAAGCTGTTCCCGGGTTCAG
GTGAAGAATGTTAGAAAGACTCTCATGAAAAAAACCTCTAACTTGGTTCGAGTGGCTGATAGCTG
CTTATCGCTCCTGTCCAGTCATCTTAGTCCATGGCTTCTGTTTCATGCTTGGTTGATGGAAGACA
GCTTTGAGTGCCGTTACTTTCCCCCTCCATGCTTGAAGTTCATTCCTCCGTTGTGCTTTGTCTGT
CATCTTCTTTCTTCCCTTCCTCGGGCACAGTAAGACAAAGAGCTG
Right flanking sequence: Indices 392675 -- 393174
GGGCTTGCTCCTCTGTTATCCCTGACTCCCTAAACTTAATGAATGAAGGAAGGGTCTCCGCTCCT
TACCCTATCGGGCAAGTGGCTTACACTCCTTGCTTGCTTTCATCCTGCTTTTAGTGCCGCTTGCT
TGCTCGAAGGAGGGGCTACCGCTCTTTAACCTCGTCGGTAAAGCGGCTTGAATAGGACTTTCCCT
ATTTTCATTGGCCTTTTCTTCGATGTCAATGTGCTCAGGTCCTTTCTTTGCCCCTTCCCTTGGGT
TGGGCTCTCCCTCAAATGCCCTTTCCCTTCGTTATCTCTACATGAGTGAAACTCAAGCACTCGAA
TATCAGTAGATTAGCGTCACGCCAACGCAACTCTCAAACCATCGGCGAGAGGAGAGTAGGTCCGG
CTATGACTTTCATAGGAACCGTTGGGCCACTATGTCATAGTGAGAGTAGGGACCCATCCCATATG
ACTCAGAGTCAAAGAAAGCTCTTAGCCTCCGACCAGTGAAGATCA
Found at i:435951 original size:12 final size:12
Alignment explanation
Indices: 435936--435961 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
435926 TTTAATCGAT
435936 GCTTTTGTCAAG
1 GCTTTTGTCAAG
435948 GCTTTTGTCAAG
1 GCTTTTGTCAAG
435960 GC
1 GC
435962 GGCTCCTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.19, G:0.27, T:0.38
Consensus pattern (12 bp):
GCTTTTGTCAAG
Left flanking sequence: Indices 435436 -- 435935
GAGAGGTCTTTCGGCTTGGACATGACGGTTGCTTGATATTGGGCGGAGTGGGCTTTGTTTGCTGC
TTTGCAGAGACTAGGCTAGGCCACGTGAATTGACCTCACCCATCACATCATCTTGGGAAGCTCCT
CCCTCCTCAACAAGCTCCACCTCCAGAATATCTAGAACCGTTTGGGATTGGACTAGATTGGTTCA
CTCAATATCCTATATAAAGGAGAAAGGGCCAAATCATATATAATGATATAATTGAAATTAAAGTT
ATGGACTCATTTTATAGATATGTTTATGTCTTATCAAGAAGCCCAAAAACTCTTTGATCTCTATA
CTTTAGAAGAGTTGAGGAATTTCCTGGAGCTCTTTCTTTCCATTTCTTTTCTGGTGTAAAACCCT
CCCTATCAATACTTCCTTGCTATTCATTGACAAGAGTTGTAGGGACAAAAATGAGTAATCGAACC
CCTTAGACCCTTTTGCATACTTCGATCTACAAGGCTTTAATCGAT
Right flanking sequence: Indices 435962 -- 436461
GGCTCCTCATATGAAATCCTGAAAAATGGAAATAGCCCATAAAATGACAGCCATCAAAAGGCCTA
AGTCCATATTCTAGCCTCGGTCTGTCCAAATTCAGCGGTCTCTACCCAAGTAGCTCTGGCCCATG
ATCCAAGGGACCTGCAACCAGTTAATCATTCTTTCTTTATTTTCCAACCACTCGGGCAATCATGC
TTGTTTTATCTTCCAACCAATCCCTTTGATTCCGTTTCTGCAGCAGTATATAATCTCGGTCCCTT
ACCTTGATGCCTACAGCTCAATCTTTTTTTCCAGTGATGGCAATAATATGCGAAATACTGTTTTT
TCTTTTTCTTGGGTTGTTTCTGAATGGCATCATAGCTACACGAGGGAAAGCGATGCTGCCCACTC
TGCCGGGGGCCGCTTTCTTCCCCTCAAAAATGCCAGTTCCACCATCAGGGCCCAGCAAGCAGCAT
AATTCTGTTCCGAGGCTGCGTTTCATTCCAGCACCAGTAGTATAT
Found at i:444607 original size:14 final size:14
Alignment explanation
Indices: 444590--444617 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
444580 GAACCACTAA
444590 CTATAAAGATAAAG
1 CTATAAAGATAAAG
444604 CTATAAAGATAAAG
1 CTATAAAGATAAAG
444618 GAGGTGACTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.14, T:0.21
Consensus pattern (14 bp):
CTATAAAGATAAAG
Left flanking sequence: Indices 444090 -- 444589
AGGAAGAAACTCCATAACATAAGGGGGAAAGCTCCACTCCTACTCCACCTAAGTTGAATCCAGTG
AAGAAGACTGGAACCTGAAAAGGCATCTTTTTCAACACTTTGATTAGTGTAACTACAAACCGCAT
TCTAGCAGCCCTAAAAAAAGAATCTCTAGCGAAGCTGTCAACTCAACCTAAGGAAAGCGATCCGC
TAGTCTAATCTATTCTCTGCTTTCGAGCAGTGAATTCCGGCCAGTCAACTTAGATGTCACTGGAC
TGGGCAAAAGCCCTTCAGTCAGCTTAGATACCGCTCCTGCTGCGTAAGATAATGTTGTAGAGGAG
TTTGTTGTCCTCAACGTTGACCGATTTCAAGAAGAGTCTAATCTAACGGGTCAAATCAAGTCAGT
TTTTCATTGACCTTAGAAGATGATTTCTTTTCCCCGAAATCCAGTACTGTCGAAAAAACAAAATA
AAAATCTAAAAAGAAAATGGAAAGAAACTAAGATAGAACCACTAA
Right flanking sequence: Indices 444618 -- 445117
GAGGTGACTGTAAAGGTCTCCGACCGAGGCTTTCATAGAAAGGAGCTTCGGTGTCACACTGGTCT
GGGCTTGTAGGGGCACCAGAAGCGGGTCTAGAGCCTGCTTCACACCCAAATCTCTTTTTGGACAC
GGACACTCAAATAAATAAAGCGTGCCCAACACCAACGTACAAGACAGATGCCAGGGCAATGAACC
ATAACCCCATTCAATATGGTTCCGACCTGCCTTGAAGCAGGAAGAAGAGCACCCGGGAAGGAGGA
CTAAGGATCTAATCTTCCCCAAGAGGGGAGAATAGGAAAGCAAAGGCTAAGGCAGGGGATCGGAT
TGAGCACTTTCATTCTTCCGGCGGAATCAAAGACATACCTCGATGCCCAGAATAAGGAAATAGAT
TCTTTATCCGCCTTCCTTAATGAAGACGAGGATTTTTAACTACTCGTATCAGCTCAACCAGTTGG
AATATCCCTTGATCTCGTATCCGTTGGTCAAGATTAGGAAAGTTT
Found at i:458678 original size:15 final size:15
Alignment explanation
Indices: 458654--458683 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
458644 AGGTTATAGC
*
458654 CTTTTTTTTTACTTA
1 CTTTTATTTTACTTA
458669 CTTTTATTTTACTTA
1 CTTTTATTTTACTTA
458684 TTCAATTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (15 bp):
CTTTTATTTTACTTA
Left flanking sequence: Indices 458154 -- 458653
ACTCATAAACCCAATAAAAAAAGTTTCACCCAGGTATACATATCCTTAGCTTGCGCCCTATTTGA
GACTAAGGCAGGTTTGGAACCCTGTCCTATCACCTTTATCAAATCCCTAGCTCTATTCCTTAGTG
CAACTGTCCTATTCCTACCATGGAAATATCTATATTTCTTTTGTTCTATAGTTTCGGATAGAAAA
GCGGACGGTATCATATATGAAGAAAGAGATTTTAAAGCCATAAGTCGTGCTAGCAACAGTCTTAC
TGTCTTGGCTCCTTTGCCCCGGTCTTTTATTTTAGTAGCACGTTCCTCTACGAAGGTGCGTTTTA
GGCCACGGTAGCAAGTGTTCTGTAAGGAGCTGTGGGACTAAAAGGCTTATGCTTATCGAGCCCTT
AATTAAGAGGAAGATGTGATTTAGTTTTCCCTGTTTTTCGCAAGTTAATCAGAATCGGCAAGATC
CCCTCTTGTTCTTGCTGCTTGGGAAGAGCAGGAAGAGGTTATAGC
Right flanking sequence: Indices 458684 -- 459183
TTCAATTTAAATCGCAAAAAGATGGATGGGCCAAATTGAACAAATCAATTTGCCTGTGCTATCGG
GCTACTCAGCTTCAAATCCTTCACGCTCCTTGGGATGCCTTACAGTCAGGGAATCTCGAAGATGA
AACTAGACTCCTTTTTTGCAGTACCTTCGGTTGAGGTGCATTTATGATTTAATCCAAAGCCTGAG
CCTCTGAACAACCTGATGAATCGCGTTAAATGTGCTTTTCTGGCGTCTTTGAGTTTATGTTATGA
GTTGATCCTAGTTCATAGTAAGTAGAAGGTGTTACGGGTCGGCCTCGGGAATTCGAGGAGCTACT
GACGTTAAGCGTTAAGATTGGACTGCTCTTGGGGGAACAGCTTAGTCCATCTTCAACTCCTAGCA
TGAAAGTGAAAGTCTCAATCCCAGTTCCATATTAAGAAAGTAGACGGACAGAACTCCCCGACCTT
GTTAGGACCCCTTCGGATTGGTCCTCTTCTAGTCGAGTAAGGTGC
Found at i:460296 original size:20 final size:20
Alignment explanation
Indices: 460271--460309 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
460261 AGGTAACTCG
460271 AGAGTA-GAAAGAACTAGAAT
1 AGAGTATGAAAGAAC-AGAAT
*
460291 AGAGTATGACAGAACAGAA
1 AGAGTATGAAAGAACAGAA
460310 CCAGTAGCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.54, C:0.08, G:0.26, T:0.13
Consensus pattern (20 bp):
AGAGTATGAAAGAACAGAAT
Left flanking sequence: Indices 459771 -- 460270
TCTTCTTTCTCCGTTGTGAAAGGAGTTGGTTCCGTAGTTTTAGAATTCGGCTGATCCCAAGTACT
CCATCTCCATCATTGCATATTTTTATATAGAAAGTAAAGAAGAAAAGGCATAACCAGAAGAATTG
TGTAAAATAAGTGAATTTATCCAGTTGAGGCATGATTGATTTTTTAAAAAGGATTCCCTCCAGAC
AGCTTAACTCCGTCAAGCCTGTACGAGTAAACAATAGATAAGGTTTGCTTGTTGGTTGTTGACCA
ACAGAAAGCATGGGATGCCCCACAACAAATAGATGGGAGCAGGAAATCTTTATCATTCGGCGTAG
TGCAGCTTATATAGAATAGAAGGGGCAAAGCGCTGTTCGTGGCACAGCTTTCTTATATTACGATA
TTTTCATTGATCGTAGCTAATTAGGTGGCAACAACCGAAGAAGCAGAAGAAGTAGCTGCTACCGC
TTCGTGGGCTTCTTCTTTTTCTGAGTCTGCTCGAAAGGTAACTCG
Right flanking sequence: Indices 460310 -- 460809
CCAGTAGCTTTGAGCTTTCACGTGTTTCAGCTCTTGTTCACAATCCAGTTGCTATTGAATCAGCG
TAAGGAGATGCCGATGAGGGTACAAGAAAAGAATGAGCTTTTGTTCAGAGCTTGAATCAGAATAT
CCTTCAGTAACTCCAGGATTCCCCTGGTAGGGCATACAGGACATACCAGGTGAGAAGTTCGGGCG
GAAAGATAGATCGAGTTTACTTTACCCTCTTGATTGACTTTCACTTTAGGACTGAAAGATAGCAA
AGGAAATGGCAGCAGTGCTTTATATATTAGGTCTTCGTTGATCACTTCTGCTTAATTTAAGCACT
TCTCTTTCGAAACCTAGAAAGCGAGAAAGAGAATAGTCAGTTCTTGTGAACGACTCCGATGCTAT
TTCTATTTAAGAAGATGGAGGAATAAGCGATGCTGCTAAGATCTGCAGTCGATTTAGCTCTTGAG
GGAAGGGAAAGGCGGACTTTAATTTGATGGGCTTTTAGGACTGGC
Found at i:516835 original size:51 final size:51
Alignment explanation
Indices: 516759--516861 Score: 206
Period size: 51 Copynumber: 2.0 Consensus size: 51
516749 TGAATGCGCC
516759 TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGGA
1 TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGGA
516810 TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGGA
1 TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGGA
516861 T
1 T
516862 TAGATTCTAG
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 52 1.00
ACGTcount: A:0.19, C:0.31, G:0.23, T:0.26
Consensus pattern (51 bp):
TAGGAACTACGATTCTGAAGAGGCTACGTTCCCGGCCTCCCCTCTTTCGGA
Left flanking sequence: Indices 516259 -- 516758
GTGCTTAAACCAAAAAAGATCCTCAAACTCCGCTCCCCAAATTTAGGATTTAGGATGTGCTTTCT
CTATTTCCGTGTCCTGCTCCAACTCGATTTTTCAGTGGTTACGAAGAGATTCAACCTTCTTTATG
ATCCTCAAAGGGTTCGGGTCTTCTTGTCTTGGTTCAACGCGCTACAGATCTGTATATGGGACTGG
GGCAGGGGTTCTTCATCTATCAAGAGAGGGTTCCCGGTAATCAAGCTAGAACTCCTTCGGACCCT
TGCTTTGTTTTATCTTCGGAAGTCTCTACTCAGACGGAGATGGGTTTTGTTGATCCAGGTCGTAC
TTTATTGACTCAAGGAAAGTAGGTTTAGAAGGTGACACCTCCGCTAATTGTCAAATTGCGTCTAT
CGGATAACTACTGTAATCTAATTTCTCAGGTTCCTCAATGCTGGCAAAAGAGCTTTGAGACGGAG
TCCTTCCCGCCCCAGGATAGAATGTGAATCAATAATGAATGCGCC
Right flanking sequence: Indices 516862 -- 517361
TAGATTCTAGTGGCTTTCTCTCTTTTTTTCTCGCCCTAGCAGCAGAAGGCTACGCTCCTCGGATT
CGTACCTCAGACTTAGAATCTTCGTCCTAAAGTTCTTAGAATTCAGTGGCATGGCTGAGGGGTAT
CTACTAAATCTTACCTTCTGGATTAAGCCTAGCCGACTATCGCTATCGATGCTTTTGGAGATAAA
GTTAGCCCTTAGGTTCAGAATAAGATCCCCTTTTTCCATCTAGACTAAGCCTAGAAAGAGAGTGA
GCCGATCAGAACTAGGAGATGATAGGATAGCTATGCTGGCTGAAACGCGCTTCACCTTAAAAGAG
ATACTTTCTTAAGGTGATCGGTTCATTGGCAACGACAGATAGGCGCGATCAAAACATTGCTAATA
TGAGACCATCCTCTGCCGGAGGGATCAGTTTGACCAGGGCTCAAATCAGACCATGTAGGGCTTAT
TCTTTCTAAGAACAGTAATCCCAGGCTGATTAGAAAGCTTACGGA
Found at i:518885 original size:18 final size:18
Alignment explanation
Indices: 518862--518897 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
518852 TAAGTTTTTT
518862 AAGTGAATGGTAAGAAAA
1 AAGTGAATGGTAAGAAAA
518880 AAGTGAATGGTAAGAAAA
1 AAGTGAATGGTAAGAAAA
518898 GGTTTGGTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.28, T:0.17
Consensus pattern (18 bp):
AAGTGAATGGTAAGAAAA
Left flanking sequence: Indices 518362 -- 518861
ACCTGTGCATCTCAACCCCAGACAGGAGATGACTTTGATTACCCGTTCCGCACCTGTATGACTGA
ATTTCATGCTTCAAAGCAGAGTTGAATCAGGCTTGAAACCCTAGCACCGAACCCTAGAAGTGAAC
TACTCGAATTCAAAATAGGCTAATGAGTCCGCTGCACACTTTCTATATCCGTACCTAATGCCCCA
GGAAATCCAATCATTCGACTGAGAGTTCCGATCCATGTACTGTGCCTCTGAACTAGGACTCCTTA
CTTGACTTCAGAATGAGATGAGGGATCTAATACAGAATTCCTAGCCATCACAGCTTCCGGCTTCC
CTTCCGCACCTGGCTTAGTTCATTTCATTCAAACTAGGCTAACAGAACTAAGTGAAGTCGTTTCA
TTCTCTTCCCCCCTTGCGTATTGCGTACTTACTTAATAAATGAATGAAACACAGTCTAATGCCTT
CCTTCCCCCTCACTCTCCTCGGTCAAGTGCTTAGATAAGTTTTTT
Right flanking sequence: Indices 518898 -- 519397
GGTTTGGTACTCGGCTCATCTTGGTTGAGTTGCTTAGAAAGCTCCCTCCTCTCGTCGGCCAAGCC
GCTTCTCCTTCATCTGTCTTTTTCTTTCCGCCTAAAAGAAAAGGGAAGATTAGCCCCTGCCCCTT
CTCTAAAAGCTTCTCTGATTCTGTTGACATGAATGAAGCCGTAGTAGGTCAAGAATCGGTTTTTC
TAATGAATGAACCGGCCTGAACTGAAAGGGAAGAGTTTGATTTCCAGCCATAGTCATAGCGGGCA
CTCTTTCTTGCTTCTTGTCTACTCCCATGCCTGCTTTCGGTAGGAAGACAAATAGGGGATCAATA
TCAATCAAGATTGTTCGTGATGCTGCTGCTTGATTTTATGTAATCCCGGGGTCAGGCTCAGACTC
GGATTCCTAGTCGGAGCTGTTGTTTTCCCGAATCGAAGGCTTTCTGTGGCCTTTCACTTCTCCCA
CTAAGATCAGACCTTTTCTGATTTGGATTTCCATTTTTTCTCCTT
Found at i:588753 original size:22 final size:22
Alignment explanation
Indices: 588714--588756 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
588704 CTTCATCCGA
*
588714 ATAAGGAAGAGACAGGTACAAT
1 ATAAGGAAGAAACAGGTACAAT
* *
588736 ATAAGGAATAAACTGGTACAA
1 ATAAGGAAGAAACAGGTACAA
588757 GGAGTCCAGC
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.51, C:0.09, G:0.23, T:0.16
Consensus pattern (22 bp):
ATAAGGAAGAAACAGGTACAAT
Left flanking sequence: Indices 588214 -- 588713
GAGAACATGGAACCCCGATCCGGCACCCGGCCGACCCGGATACCTTGAGAAGAAACCACTTGGCT
TGGAATACTAAGAAAGGGGGGACTAAAACAGCAGATGAAGGAACAGAAAAAGAGCTCCTTGCCAT
AGGACGTATTCCCGAAAACCCCTATACTAGAGTTAGGAGCAGCAAAAAAAGAAGAAAAGGGCAAC
AGCAGAAAGAGCTGCAACAACCACCTCGATAACAACCTTCGGAAAAAGAAGGAAGACTATTACGA
ACTCATACGCCTTGAGACAGAGGGGGAATCAACTAAACGGGGCTTAGCTGAAAGCTTCCTTGTTG
GATTCGTTACCGGCTTACTCTTCTATTCGTTACGGACTTACTCGCTTAGCTAACAGCTCTTGGCT
CAGAAAGAATAGCTCCTAGGGCGAAAAAAAAATTTAGAAATTACCCGCTCAATCAGATAGGACGA
CCTACTCCTTAGTTGAACCGGACTTTGCCACTCACCTTCATCCGA
Right flanking sequence: Indices 588757 -- 589256
GGAGTCCAGCTGAACCACCCAGATCCGCTTCTTTCATCAAGCAACACAGCCTAGTCTAACCCGAG
CCCGAGTTCGTATTGGTAAATTTCGGGTCAGCAGGCAAAGGAAAGGGAGCACCCACGTTCTACTT
GCATATAGAAGTCGATCGGCCATTCATATCACTATGGTTAGCTCCGACTCCTTCTTCACTTTACC
CCTTATACGAGGCTTTTTTTTTTGAAACCTATTCTCGACCCTCCTTCCTACCCCACCCACCGCTC
TTCCTTTGAGGCAAAAGTCTCTCTTATTCGACCAGAAGAGCCTTCTTCTTCATTTCACCTATGGA
CTTTTTCCACGTAGCAACTTCCATACTGCACGAAGTCTTCTTCGGGAATGGCTTACCGCTCCGTG
GGAATTGGATTTAGTCCCGCGCGCTCCTGAAATGGGGGCTCTTTCCTCGGTGCGAAGGATCAAAC
CCTACGCCCACTGCCCTTGTTCCAAGATCTCACTTCATTCACGTA
Found at i:602363 original size:34 final size:34
Alignment explanation
Indices: 602320--602389 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
602310 AGCTCTTGGA
602320 AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
1 AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
602354 AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
1 AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
602388 AG
1 AG
602390 AGTCTTTTTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.24, C:0.14, G:0.30, T:0.31
Consensus pattern (34 bp):
AGCTAAGCTCGTGTCGTAATCGAATTGGTTTGAG
Left flanking sequence: Indices 601820 -- 602319
TTTCATAGTAGCTCGGTTCTTAGGTGGCTTCCTATCCTATTAGCTCTTAGCTCGTAGCTCTCTTC
TTGTAGCTAGGTAGCTAGTGGTTAGGTTGTTATAGACGATATGACGATAGTCTTAGTCTTGTTTA
TCGTCTTCCCTTATGAGTGGAATACCTCTTTTTTAATCTGCGTGTGCCGGATCTCATAAATAACT
TACGCTATTTCCCGGTCATCCTTACCCCTTTCACAGCCGTAGAGAAAGGGGTTTCTTTTGTTTGG
AAATCCAGTTTTCGATTGTGAGCGGTTTGTGGTAAATATAGAGTTTACACATTAAGAACAGAACT
AGGTCGTCTGAGCTCGTTCCTCAAGCCATACATGGCTGAATAAATCACCCACAGTGGTCTGAAAC
ATACTTTGAACTGAGTTTTTATACTCTTTTGGGCGACCCACTCCTGTTCTAGTCGAACCAGTCGT
CTTTTTGTTCGTATCCGGGGCCTTTAAGAGCCAGCAGCTCTTGGA
Right flanking sequence: Indices 602390 -- 602889
AGTCTTTTTCTTCGTAATCTGGATGAGTGCGCGTCCTTTGTCTGCTGAAAGCCGGGTTGATATTG
ACGGCTGGAGAACTCTTCGTATCGTACAGAGGTTCCCGAAGACCCCTCACTCAATCGCCGGCTTG
ACCTTTCATTAGGATAGTGAGAGAGAGCAGGAAAGCAAGTAGCAGTCTAGGCTTTCTTTCCGGCT
AGTGCTTTCGATCTAGTATAGTAGGGTTATGCTCTTCGGGTGTCTTATCGGGTTTCCCCAGTACT
TACGGTTAGTTTTGGCTCCAGAATCCATTACATATAGTGAGTGTCTGGGGTGTTATCGGATTGGG
CAGATTGCCCAGTTGGTAATGTTATTTCGGTCACTGAAAATGAAATCAGTCAACATGGGGCCTAC
TCTGATTCGATCATTGCTCTTGTTGGTTTTGCTCCCGACTAACCTTTTCACATTATTGGTGTACC
CAATAGATGGGTCCCCCTCCAGTGCCTAGCGCGCCTCTGAGCCTT
Found at i:628897 original size:25 final size:25
Alignment explanation
Indices: 628852--628899 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
628842 GAAGCGAGAC
*
628852 TCGACTGTTAAGGACCCAGAGGGGA
1 TCGACTGTTAAGGACACAGAGGGGA
* *
628877 TCGACTGTTAAGGAGAGAGAGGG
1 TCGACTGTTAAGGACACAGAGGG
628900 AAGCACAAGG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.29, C:0.15, G:0.40, T:0.17
Consensus pattern (25 bp):
TCGACTGTTAAGGACACAGAGGGGA
Left flanking sequence: Indices 628352 -- 628851
CGCATTCGCTGCATCTGAAGGGACGATTTCAGATAGGTAGGTTGGGTTGCTCGTTGTGGTTGCCC
GGACCTCGATCTAGATCCAAGATAAACCAAAAGCATGGGTCGTGGTCGGCAGATATATATGATTC
TGCCGGGGCTTGGGCTTGACTTCTTTCTTCATGAATGATTTTGGAGAAGCCTGCCTCGAGAGAGA
CATATGGCATATCTGACTGCCTGATTGGCGAGCAGCTGTCCTCATTCATAAGTCCAAAGAACTAG
CAACCAAACTGGTCGCAAGCAGGAGAGTGACCAGGCCTGATACTGATTGAAACGTTTATTTAATT
GGAAGCCGTTCAGATAGCCCTAATTAGTTTTAATTAGTTTAGTCAATGTTGAGCTGTCATATCTA
GCTGCCATATATGTAAACATGCCCTAAAAGTAAAGGGATCATATTTCCTTTAGTAACCACTTTTA
CCCATCCGCTCTTCTCCTGACCGATTGGAGGAAGAGAAGCGAGAC
Right flanking sequence: Indices 628900 -- 629399
AAGCACAAGGTTGGTGACCCGGGGGAAAGCGAATGCAGATCTCACGCAAAGTGAAATCTCAAGAT
TCAGATTGGGTTTGTGTTCGGTGTGGAGTAGATAGGGCTATTCCTTAGCAAGGCTATTCAGTAAA
GGCGAGAAGGGATCTATAGCAAGGGCAGCCCGGGTCTACCCAAAGAAAGGCAGAGTTGAGGAAGA
TAGATCAAACAGCCTTAGCGCTTTAGCTTGAACTGTAACCTTACCCTCGCTACTGACCTGTCGCT
TGGCCCGAAAGACTGGAACTAGAAGTTCCTAGAAGTCAACTGTGCCTAGACCTCAATCAATACGC
TTACTGAGAGTACCGGTACAAGAACAAGAACAAGGATTTCTCTTTGGTCAAAGCCGCCGCACTTG
AACCGTAACCAGCTAATGCATCGCCTTCTATCTGCATTTCTAAGACCTTCTGCTAACCAATTAGG
TTGGTTCATCAGGTGCCAAGGCATCTCTTTCTCCCAGGTCCCATC
Found at i:630781 original size:22 final size:22
Alignment explanation
Indices: 630755--630799 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
630745 TAGTGGAGCC
630755 TTCGTGTACCAATTTCAGTGGT
1 TTCGTGTACCAATTTCAGTGGT
630777 TTCGTGTACCAATTTCAGTGGT
1 TTCGTGTACCAATTTCAGTGGT
630799 T
1 T
630800 GAGTTTCGCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.18, C:0.18, G:0.22, T:0.42
Consensus pattern (22 bp):
TTCGTGTACCAATTTCAGTGGT
Left flanking sequence: Indices 630255 -- 630754
TCCGTTGGGACGGGAACATGTATCCCTCCCAACCAAAAATCTTTTTGTCTAAATCAGCTTTCGGC
CTATCGATTTAACCGGGAGCTGCTGTTGAGCACTCTTTCCATCACCGGATTCCCTATGCGCTGAT
TGATGCTTCCTCTCCGACTCGATGAGACCACACTACTGAGTGAGCTTCTTTCTGGCGCTCTTCCT
AGGATTCCTAATGCCTCTTGCTTCAACACAGAATAAGGTCTTTTCTCGGCCACTTTGTCATGAAA
TGAAAGCACAGTGAGTGAGTCTTCTTTCCGAGTCGAGTACTAGGCAGTCAATGTAGAGTTCACTT
CATTTGTCAGACTCCCGGTACCGAAGCAAAGTACTCATCCGAAAAGACGGTTTGATCATGCCCTT
TGTCCTCAACCCATGGTTCTCCTATATCTCCTAACTTTCGCTTTGCTTTCTCTTGAGCCCGCATT
TCGTGTTTTTTAAGATATTAAGAGGTGAACCCACATAGTGGAGCC
Right flanking sequence: Indices 630800 -- 631299
GAGTTTCGCACTCCCGTCATCTTCCTCTTCTTTTTGGAAAATCCCAAATAGTCATCAGAAACAAG
CTAGCCGAGCATTGATTTGGGTGTGGGTGGGGTATGGTGCCCCAACGGATGGATCTCCATCAACA
TGGGATTTTTCCGAGGGGATCAATGTCTGGTCGAACCAAGCTTCCTTCTCTCTCTCTTGCTTCCC
CACCTGTGACTGAAGCTTCCACATGAACTTGACTTTCCTATCTGAGTAGACCGAAAGTTCTACTT
TTTGGGAGGGACATTAAAAAGGTAGCTTTCTCCCTGGTCGATCAGTCGTTCAATCCTTTCCTCTT
GATCAAATGCATTTCTAAAAGATTCTCACAACACAATGGACTCCAATACTGAACTGAGACGGACC
CAGACCCCCTACCGAAAGGGCTCTGTACCTATATGTTCTTTATCTCAAGCGATAGCTTTCAAGTG
CCCGACCCTCTTCCCTTGATCAATGAGTGAGAAAGCAATAGCCAG
Found at i:634718 original size:20 final size:20
Alignment explanation
Indices: 634693--634733 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
634683 GCTTCCACTC
634693 CTATAAAGAAGATAGTTAGA
1 CTATAAAGAAGATAGTTAGA
634713 CTATAAAGAAGATAGTTAGA
1 CTATAAAGAAGATAGTTAGA
634733 C
1 C
634734 CAAGTTCACT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.49, C:0.07, G:0.20, T:0.24
Consensus pattern (20 bp):
CTATAAAGAAGATAGTTAGA
Left flanking sequence: Indices 634193 -- 634692
CATTTGATAGAGTTTCATCCAAGGCAGCCCCTTCTTTTTAAAGCAAATCGTCTGCTCTCTCTTGG
GGAGAGGAATTCCTTGATGCATCGAATGCTGCTATTAAATGCGCTGTTGTTTCTGAGTGAATAAC
CGGTCTTGTCGTATCCGCTGTGAGCCTATCTGCTGCTGTAAGAAAGCTAACTTCATGCGTAAAAG
CTGGCCGTTCACAAAGCTATAAAATCTTCATTCCGGGTTAGGGGAAAGGCGATTCAGGGATTTCC
TATTGCGAAACTCTTTTACCATATATTGAATTACTACGGGTATAAAAAAAGAAGAAAGAACTATG
ACACGTAGACGGGGCGAAATCTCCCTACGATTACGTTCCTATAGAAAGGGGGTGCTATGGAAAAG
AGGAATCTCAGGTACTTTTAACTTTATGCCCATCTTGCTTCTGGTAATGCAAATGGAAATTCTCA
TTAGGATGCATCTGACTTCAACCCCAAATCTTTTCGCTTCCACTC
Right flanking sequence: Indices 634734 -- 635233
CAAGTTCACTAACATTTCCTTCTAGGCTCTAGCCTCAAGCTAATCTCATTAGGCTCCACATTCCA
ATCTTCACACTCGCATTAAATCGTAAGACTCTCATCAGAAGACAGTCAAACCTAGGATTCAAAAT
CTTTGCTTCCAGTGGCATGAAGTGAGATTGATTCTAATGAATCATAAATTGCAATCTTAATCCTG
ATGATAGAAATCCTCTTGCATTTTTTCACCTTCTTCCACCATACTTTCAATTCTATCTGATCGGG
TATTCTTGATTGGTGCTAAGCTGACTGAAATAGTTTTTCTTTAAGTTTAGTTTAGTCGAAAGTCA
CATGTGGGGGTTGTACACAAAAGTTTAAGTGGCACATCACACTCACATGACCACTTTAATGACTT
GCCTTTTCTTTGCTTAGGATGGTGACACTTGTCAAAGGACTAATGGCTGGTGCTTTTTCTAGCCT
TGGAACTTGCTCTCTTTGCTTTGCTGCCTGCTCTTTAGGCTTTTC
Found at i:641901 original size:17 final size:19
Alignment explanation
Indices: 641865--641902 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
641855 ATTTCTTTTT
*
641865 TTATAATTATATTAATTTG
1 TTATAACTATATTAATTTG
641884 TTATAACTA-ATT-ATTTG
1 TTATAACTATATTAATTTG
641901 TT
1 TT
641903 GTCTCCATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 7 0.39
18 3 0.17
19 8 0.44
ACGTcount: A:0.34, C:0.03, G:0.05, T:0.58
Consensus pattern (19 bp):
TTATAACTATATTAATTTG
Left flanking sequence: Indices 641365 -- 641864
ACGTTTTCGTGTTTGAAATTCCAGGTCTGGTCTTCATTGGTATTTGCTTTTTGCTCACTCACTAC
GTTTTTTTTTATTTTTAGTTCTTCCCCCGCACGGGCGAGCTGTCTGAGGTCGATGGTGCATCCGG
TAAGCTCTATCGGTATTCATCTCCAGAGCCCGGTCAGAGCTGACTTTCACGAATAAACCCCGGTG
ACGGTTACCTGCTTTGCTTAACCTAACCGGCCAGAAGGTTCCTTTACCGATAGCCGACCAGAGAT
CTAAGGGTTGACGGTTAGTTAGTTCTCTTTTCTCCGTCCGGTAATAGAATTTCTTTACCGATAGA
GCAACCCGGAATCCTGTTCTTACTTTACGAGAAGGTTGTACTATTTATTTAGTAGGAGGGGGAAG
TGGATCTCATTTCAAAACTGATCGAACCAGGAAGTGATCTTTACTAGAAGGAAGGAGAGCGAAAT
CAAGTTCTTTTCTTTTATTATTTAGTATTTTTTATATTTCTTTTT
Right flanking sequence: Indices 641903 -- 642402
GTCTCCATCAGTCAAATAAAACGGATCATTTCTGTGGGATCGAAGAATTTCATGAATTTCATTAT
ACCCCTTCCCTTCTAAGATCCTTACTTTGTGTCTGGTATTTCTATAGGAATAGAATAAATGATAC
ACAGATACAGACAGTAGAAAATATTTTCTATTACTCTTATATTAAATATTAAAACATTAATATTA
AATTAAAAGGAATAAAAGATGCCTTTGAATACTTAAATATAGATATTGGGATGTCTCTTAGTAAT
GAATAATTACTTCTCGCCTGATCTGGAATAGAGTAATAGTAATATATTCTATGTAAAACATAAAC
TTGCCCCGTCTAGGAACTTTTAATTAAGATAGGAATACACGGTTGCACAAAAAAATTGTTTTTGC
ATCAGCCCAGAAAGGTCCGTTGAGCGCCTCGTGGCTATGTCATAATAGATCCGAACACTTGCCCT
GGATCGACTTCCAGATCATAATTGCTCTAGTGAATAACTAACGAA
Found at i:650205 original size:23 final size:25
Alignment explanation
Indices: 650166--650214 Score: 84
Period size: 23 Copynumber: 2.0 Consensus size: 25
650156 CTAGCCTTTA
650166 TTATTTATATATAAGGTATGCTCTT
1 TTATTTATATATAAGGTATGCTCTT
650191 TTATTT-T-TATAAGGTATGCTCTT
1 TTATTTATATATAAGGTATGCTCTT
650214 T
1 T
650215 CCATTTTTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 17 0.71
24 1 0.04
25 6 0.25
ACGTcount: A:0.24, C:0.08, G:0.12, T:0.55
Consensus pattern (25 bp):
TTATTTATATATAAGGTATGCTCTT
Left flanking sequence: Indices 649666 -- 650165
CTTGGCGGAAACCGGACTGAATGAAAAGGCTAGCGATGTCACCTATAATCTAAGCTGTCCCGCAT
CTTCTTCACCTGCTTAGTAAAATCCGCCTGAGGAAGCATCTGATTACGCCTTTCTTGCTTCTAGG
CTTGCTTTATTTGGCCAGGCAGCTTCCTACTTTGCACCTACACGTCCGCCGTCTTGTAACTTCAC
TTCCTCTTTCGGAGGAGATCTTTCTTCGAGCCGTTAACCATCTCTGACTTTCCTTCCCCATCTGA
GGGCGTAAGAGTTCCGGCAAAGAAAGGAGGAAAACAGACCCAGAAAAAAGGCGCCCAGCCGGTAA
AAGCCTACTCTGATTGCCTTATCCCTTGTCTCGCCCTACTAAGAAAAGTCAAAGTCTATGCGGCT
AGGAACTGCTCTTATGAATACCCGGCTTACACGAATAGCTCCAGAGAGCTCAGACTGAGACTGAC
GGTTAGGTGCTCCGCTTCCTTCATTGGTAAATGCCCTAGCCTTTA
Right flanking sequence: Indices 650215 -- 650714
CCATTTTTTCTTTCCACGAGTTAGAAGTTCACTCCGCTGTTCTCAAGGCATTTCAGAGTAAGCCT
ACCTTCTTATACACGCGTTATACACGCGAGGCTAGAAGGGCATAATCAAGGGTGTGCGAGTGACA
GGCTAACTGGGTTCTCTCCAACTACCTATCCAGCAGGGCAGAAGGGAGTGTGGGATTGGGTTGAC
CTTACCTTATAGGTATCGATGGCATGGAAATACCCTCCCCGTTTCCATAGACTCGTCGGCGAGGG
GGAAGAAGCTAGAGGGAGTTGTTTTGCGCATTAATTAAGCACCTTGGCATGTATTCTCCTGTGCT
GCCGATCGTGGGAAAGCTCCGCTGGCACAAGCACACGGAAGAGCTGGCATGGGCAATCCGGTGGA
CCAATCCTATTATGGTAGAACTAGCTAAAGAAGCCCGAAGAAAGAGCCTTTTGGATGGGGCTAGG
GCATTTGCTTCAGAAGGCAAGCATCAACTCCATGGCTCACTGATC
Found at i:650221 original size:23 final size:23
Alignment explanation
Indices: 650175--650222 Score: 78
Period size: 23 Copynumber: 2.0 Consensus size: 23
650165 ATTATTTATA
*
650175 TATAAGGTATGCTCTTTTATTTT
1 TATAAGGTATGCTCTTTCATTTT
650198 TATAAGGTATGCTCTTTCCATTTT
1 TATAAGGTATGCTCTTT-CATTTT
650222 T
1 T
650223 TCTTTCCACG
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
23 17 0.74
24 6 0.26
ACGTcount: A:0.21, C:0.12, G:0.12, T:0.54
Consensus pattern (23 bp):
TATAAGGTATGCTCTTTCATTTT
Left flanking sequence: Indices 649675 -- 650174
AACCGGACTGAATGAAAAGGCTAGCGATGTCACCTATAATCTAAGCTGTCCCGCATCTTCTTCAC
CTGCTTAGTAAAATCCGCCTGAGGAAGCATCTGATTACGCCTTTCTTGCTTCTAGGCTTGCTTTA
TTTGGCCAGGCAGCTTCCTACTTTGCACCTACACGTCCGCCGTCTTGTAACTTCACTTCCTCTTT
CGGAGGAGATCTTTCTTCGAGCCGTTAACCATCTCTGACTTTCCTTCCCCATCTGAGGGCGTAAG
AGTTCCGGCAAAGAAAGGAGGAAAACAGACCCAGAAAAAAGGCGCCCAGCCGGTAAAAGCCTACT
CTGATTGCCTTATCCCTTGTCTCGCCCTACTAAGAAAAGTCAAAGTCTATGCGGCTAGGAACTGC
TCTTATGAATACCCGGCTTACACGAATAGCTCCAGAGAGCTCAGACTGAGACTGACGGTTAGGTG
CTCCGCTTCCTTCATTGGTAAATGCCCTAGCCTTTATTATTTATA
Right flanking sequence: Indices 650223 -- 650722
TCTTTCCACGAGTTAGAAGTTCACTCCGCTGTTCTCAAGGCATTTCAGAGTAAGCCTACCTTCTT
ATACACGCGTTATACACGCGAGGCTAGAAGGGCATAATCAAGGGTGTGCGAGTGACAGGCTAACT
GGGTTCTCTCCAACTACCTATCCAGCAGGGCAGAAGGGAGTGTGGGATTGGGTTGACCTTACCTT
ATAGGTATCGATGGCATGGAAATACCCTCCCCGTTTCCATAGACTCGTCGGCGAGGGGGAAGAAG
CTAGAGGGAGTTGTTTTGCGCATTAATTAAGCACCTTGGCATGTATTCTCCTGTGCTGCCGATCG
TGGGAAAGCTCCGCTGGCACAAGCACACGGAAGAGCTGGCATGGGCAATCCGGTGGACCAATCCT
ATTATGGTAGAACTAGCTAAAGAAGCCCGAAGAAAGAGCCTTTTGGATGGGGCTAGGGCATTTGC
TTCAGAAGGCAAGCATCAACTCCATGGCTCACTGATCGAGAGTTT
Found at i:670158 original size:14 final size:14
Alignment explanation
Indices: 670139--670167 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
670129 GGCTTACTGT
670139 TTAGGTAGGATAGA
1 TTAGGTAGGATAGA
670153 TTAGGTAGGATAGA
1 TTAGGTAGGATAGA
670167 T
1 T
670168 GGATGTAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.34, C:0.00, G:0.34, T:0.31
Consensus pattern (14 bp):
TTAGGTAGGATAGA
Left flanking sequence: Indices 669639 -- 670138
GACCCGCAACTCTCGAAGGGGCCACCCACCGCCCGATGTAGCGATGTAGCAAATCCTCCCTTTAC
TCAATGTACCGCGCTTAGCCTCTTTCAATCAAGGGAAAAAAAAAGAGTGACGAACCCGGTCATAG
GTTGGTCCAAAGAACGAGAGTCGGCTTCCTTAACTTAAGGGAGTTCTTCCTCAGTAGCTCAGTGG
TAGAGCGGTCGGCTGTTAACTGACTGGTCGTAGGTTCAAATCCTACTTGGGGAGAATTTTGAGTT
ATCGCTTTTCTGACGCCTGTTTTTCTCTTTAGTTTCTAAACTAGCAGAATCGTGGGACATCAAAA
GTGGGAAGTTGATTGTAGGGTTTTATTCTTCACTCTCGTATAGGTGAACTTGGTTCGTTCAATTC
TTAGGGAAAAGGAAGGATCCACTGTGAATGAATGGGAAGACTGGAGTAGTATCTTCATTAGCCGG
AAGGACTCCACTAGCTCGAAGAACGAACAAGAAAAGGCTTACTGT
Right flanking sequence: Indices 670168 -- 670667
GGATGTAGTCCAATGGCTAAAGCTCTGCCAGCTTCTTGTAGACTGAACTCTCTTCTCTTTAGGTT
CCGAGTTGTTTTTTTGGGGGTAAGATTTTTCTTCGCCACTAGTACCAACGAAGTTCTTGGTTATT
TGAAAGGAGGAAGGAAGATCTCCACTCATTTCATTCATTCAGTGCCTACGGCGAGGCGCGACCCA
CAACAAACAAAGGCAACGAAGTTGCTTGCTGTAGCCCTCTTTTAGTAGACTAGGCTGAGTAAGCG
TAAGCTATTTAAGTAGGCAGGGTAGGCTCGCAGCTTCGCCAGAAGCGACTAGTCGCCTCCTTTCC
TCCGCCGAAAGATGCTTAGCCAGAAGCGACGAAGGGGGGGCGTCGGGAAGGCCGACGACTACATG
ACATGAGGGAGAAGCTGTCGTAGAAGCTTTGCCCCTTGCTTTACAGAGATTGTTATGAACTGACT
AAATGACTAGATTCTCCCGGCTAAGCTAATAAATAGTATTTGTTC
Found at i:687774 original size:28 final size:28
Alignment explanation
Indices: 687743--687799 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
687733 ATTTAACAAC
687743 AACATTATAAGAAAAGATATTAATAGAT
1 AACATTATAAGAAAAGATATTAATAGAT
687771 AACATTATAAGAAAAGATATTAATAGAT
1 AACATTATAAGAAAAGATATTAATAGAT
687799 A
1 A
687800 TCGGTAGTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.58, C:0.04, G:0.11, T:0.28
Consensus pattern (28 bp):
AACATTATAAGAAAAGATATTAATAGAT
Left flanking sequence: Indices 687243 -- 687742
TAACGCAATTCCGGGAGGAGTCGGTAATTGGGCACTGGATCCCTTCGGACCTGGAAAACGTGTAA
CGCTGGGTCGGGGTTTGGTGAACCAACTGGTCGCTCTTCTAGTTGAAGTATCGGGCCCCTTTTTC
GTTGTCTAGGTTACACCTTCGGAATACCCCAGAAAGGGAATTCTTCTCTACTTCCCGTGATCTTC
ACTTTACGCCACACCGACTCCCTTTTCGAAACGTCATAAGGCGTGGAATTAGACCAAGGGGAATC
TCCATAGGAACTAGTCCCTCAGATTTCGCACGTAGGAGATCGAGACACAGCCCCAGGGCTATGGG
GAAAGATGTAGATCGATCGCCCTAGATAGACAACTACATAGAGGGTCTCTACAAGTCTATATATT
CTTAGATTTCGTTCCCCCCGTGACGATCAATATCACAACCAATGAGGTCTGCAAGTTTCACATCT
AAGTAATACCCGATCCGGTAGTTTACGATAAAGATATTTAACAAC
Right flanking sequence: Indices 687800 -- 688299
TCGGTAGTTGTCCGGTCGTACCCAAACAATAAGATTCCAGAGGGAAATGCACCTAAGATCAAATA
TTTCGAGCCGGCTTCCGTGGAAAATTCAGACTTTCTTTTTGATGCTGCGATCACATAAAAACATA
AACTTTGAGGCTCAATAGCTAAATACATGGCAATTGAATCATGAGCCGAGATCATAAAGAGCATA
CTGCGAGTAGGAAGTAGAATTAATACAATGAATTCAAAAGCATCAAACCTCTCTTGTTCGGAAGA
ATCGAAACACATCGAAATGGTACCAGCCGTACTTAATAATAGAAGGATTTGGCAGAAATATGTAA
AATTGTCCCTCCTAAAAAAATTATTCCAGAATAAATGGGCAATAGTTAGGAGAGGTGCGCCAGCG
GCGAGCAGAAGCAAGGTTATTAGATACCTCAGGAAAGCCCGGCCAGAACCACACGTGCAAGTTTC
CCTGCATGTGGCTCGTCCGTGATAACTTCTTCGGATTTGCGTGAA
Done.