Specifications
==============

Sequence source file: "/mnt/biodata02/home/xyzhang/pmgdraw-test/test_set/outdir_mt3/NC_069586.1/NC_069586/Repetitive_sequence/123.misa.ini"

Definement of microsatellites (unit size / minimum number of repeats):
(1/10) (2/6) (3/5) (4/5) (5/5) (6/5) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           735196
Total number of identified SSRs:                 86
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	77
2	8
3	1

Frequency of identified SSR motifs
----------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A	-	-	-	-	-	25	7	3		1	1	37
C	-	-	-	-	-	2				1		3
G	-	-	-	-	-	1	1					2
T	-	-	-	-	-	26	6	2			1	35
AG	-	1		1								2
AT	-	1										1
CT	-	1										1
TA	-	1										1
TC	-	3										3
TAC		1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	5	6	7	8	9	10	11	12	13	14	15	total
A/T	-	-	-	-	-	51	13	5		1	2	72
C/G	-	-	-	-	-	3	1			1		5
AG/CT	-	5		1								6
AT/AT	-	2										2
ACT/AGT		1										1